Pregenerated sensors for CD300LD5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000089722Ensembl transcript IDs: ENSMUST00000100239.3
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CAAAGACCATCAGCAAGAAGGAGATGCTGCTCAACAGGGACCAGATaGAGAGAGAGTTCTGAGTCACCTGGCCAATGTTCTCTGTGCCAA | + |
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Preference number: 5 (lower is better) Translates to: QRPSARRRCCSTGTR*RESSESPGQCSLCQ Trigger: TTGGCACAGAGAACATTGGCCAGGTGACTCAGAACTCTCTCTTCATCTGGTCCCTGTTGAGCAGCATCTCCTTCTTGCTGATGGTCTTTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100239.3 |
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| CDS TCA 90 bp | AACTGTGGATGGCAGAACTGTGGCTGTCGTCGTCATGATTGTAGTTaGAATTTCTGGGTCAATGTTCACGTTAACTTTAAACATGGGATC | + |
|
Preference number: 5 (lower is better) Translates to: NCGWQNCGCRRHDCS*NFWVNVHVNFKHGI Trigger: GATCCCATGTTTAAAGTTAACGTGAACATTGACCCAGAAATTTCAACTACAATCATGACGACGACAGCCACAGTTCTGCCATCCACAGTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100239.3 |
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| CDS CAA 72 bp | CCTGGCCAATGTTCTCTGTGCCAATGCTCTCCGTGGTaGGTGTTGTGGGTGTCAGAACTGTGGATGTCAGAA | + |
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Preference number: 6 (lower is better) Translates to: PGQCSLCQCSPW*VLWVSELWMSE Trigger: TTCTGACATCCACAGTTCTGACACCCACAACACCAACCACGGAGAGCATTGGCACAGAGAACATTGGCCAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100239.3 |
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| CDS CCA 72 bp | TGTTCTCTGTGCCAATGCTCTCCGTGGTTGGTGTTGTaGGTGTCAGAACTGTGGATGTCAGAACTGTGGATG | + |
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Preference number: 6 (lower is better) Translates to: CSLCQCSPWLVL*VSELWMSELWM Trigger: CATCCACAGTTCTGACATCCACAGTTCTGACACCCACAACACCAACCACGGAGAGCATTGGCACAGAGAACA 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100239.3 |
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| CDS CAA 72 bp | CAATGTTCTCTGTGCCAATGCTCTCCGTGGTTGGTGTaGTGGGTGTCAGAACTGTGGATGTCAGAACTGTGG | + |
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Preference number: 6 (lower is better) Translates to: QCSLCQCSPWLV*WVSELWMSELW Trigger: CCACAGTTCTGACATCCACAGTTCTGACACCCACAACACCAACCACGGAGAGCATTGGCACAGAGAACATTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100239.3 |
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