Pregenerated sensors for CD300LD4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000069609

Ensembl transcript IDs: ENSMUST00000100240.3

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	CCTGGCCAATGTTCTCTGTGCCAATGCTCTCCGTGGTTGGTGTTGTaGGTGTCAGAACTGTGGATGTCAGAACCGTGGATGTCAGAACTG	+
Preference number: 5 (lower is better) Translates to: PGQCSLCQCSPWLVL*VSELWMSEPWMSEL Trigger: CAGTTCTGACATCCACGGTTCTGACATCCACAGTTCTGACACCCACAACACCAACCACGGAGAGCATTGGCACAGAGAACATTGGCCAGG 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100240.3
CDS CCA 90 bp	CTGAGTCACCTGGCCAATGTTCTCTGTGCCAATGCTCTCCGTGGTTaGTGTTGTGGGTGTCAGAACTGTGGATGTCAGAACCGTGGATGT	+
Preference number: 5 (lower is better) Translates to: LSHLANVLCANALRG*CCGCQNCGCQNRGC Trigger: ACATCCACGGTTCTGACATCCACAGTTCTGACACCCACAACACCAACCACGGAGAGCATTGGCACAGAGAACATTGGCCAGGTGACTCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100240.3
CDS TCA 72 bp	AGCCCTGCTCCTGACCGCTCACCTCCTCTGGACCTGTaGCTGGATCCTGAGCCGTGCAGCAGCCTGGGAGGA	+
Preference number: 6 (lower is better) Translates to: SPAPDRSPPLDL*LDPEPCSSLGG Trigger: TCCTCCCAGGCTGCTGCACGGCTCAGGATCCAGTCACAGGTCCAGAGGAGGTGAGCGGTCAGGAGCAGGGCT 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100240.3
CDS CCA 72 bp	TGTTCTCTGTGCCAATGCTCTCCGTGGTTGGTGTTGTaGGTGTCAGAACTGTGGATGTCAGAACCGTGGATG	+
Preference number: 6 (lower is better) Translates to: CSLCQCSPWLVL*VSELWMSEPWM Trigger: CATCCACGGTTCTGACATCCACAGTTCTGACACCCACAACACCAACCACGGAGAGCATTGGCACAGAGAACA 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100240.3
CDS TCA 72 bp	ATGCTGCTCAACAGGGACCAGATGAAGAGAGAGTTCTaGGTCACCTGGCCAATGTTCTCTGTGCCAATGCTC	+
Preference number: 6 (lower is better) Translates to: MLLNRDQMKREF*VTWPMFSVPML Trigger: GAGCATTGGCACAGAGAACATTGGCCAGGTGACTCAGAACTCTCTCTTCATCTGGTCCCTGTTGAGCAGCAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100240.3
CDS TCA 72 bp	TCAGCAAGAAGGAGATGCTGCTCAACAGGGACCAGATaGAGAGAGAGTTCTGAGTCACCTGGCCAATGTTCT	+
Preference number: 6 (lower is better) Translates to: SARRRCCSTGTR*RESSESPGQCS Trigger: AGAACATTGGCCAGGTGACTCAGAACTCTCTCTTCATCTGGTCCCTGTTGAGCAGCATCTCCTTCTTGCTGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100240.3

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