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Pregenerated sensors for CD300LD2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000089753

Ensembl transcript IDs: ENSMUST00000092463.7, ENSMUST00000106578.8

Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS CCA 90 bp TGTCCGAACTGTGGATGTCCGAACTGTGGATGGCAGAACTGTGGATaGCAGAACTGTGGATGTCCGAACTGTGGATGGCAGAACTGTGGA +
Preference number: 5 (lower is better)
Translates to: CPNCGCPNCGWQNCG*QNCGCPNCGWQNCG
Trigger: TCCACAGTTCTGCCATCCACAGTTCGGACATCCACAGTTCTGCCATCCACAGTTCTGCCATCCACAGTTCGGACATCCACAGTTCGGACA
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106578.8
CDS CCA 90 bp GGTTGGTGTTGTGGATGTCCGAACTGTGGATGTCCGAACTGTGGATaGCAGAACTGTGGATGGCAGAACTGTGGATGTCCGAACTGTGGA +
Preference number: 5 (lower is better)
Translates to: GWCCGCPNCGCPNCG*QNCGWQNCGCPNCG
Trigger: TCCACAGTTCGGACATCCACAGTTCTGCCATCCACAGTTCTGCCATCCACAGTTCGGACATCCACAGTTCGGACATCCACAACACCAACC
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106578.8
CDS CCA 90 bp CCATGGTTGGTGTTGTGGATGTCCGAACTGTGGATGTCCGAACTGTaGATGGCAGAACTGTGGATGGCAGAACTGTGGATGTCCGAACTG +
Preference number: 5 (lower is better)
Translates to: PWLVLWMSELWMSEL*MAELWMAELWMSEL
Trigger: CAGTTCGGACATCCACAGTTCTGCCATCCACAGTTCTGCCATCCACAGTTCGGACATCCACAGTTCGGACATCCACAACACCAACCATGG
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106578.8
CDS TCA 90 bp CAAAGACCATCAGCAAGAAGGAGATGCTGCTCAACAGGGACCAGATaGAGAGAGTGTTCTGAGTCACCTGGCCAATGTTCTCTGTGCCAA +
Preference number: 5 (lower is better)
Translates to: QRPSARRRCCSTGTR*RECSESPGQCSLCQ
Trigger: TTGGCACAGAGAACATTGGCCAGGTGACTCAGAACACTCTCTTCATCTGGTCCCTGTTGAGCAGCATCTCCTTCTTGCTGATGGTCTTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106578.8
CDS TCA 90 bp AACTGTGGATGGCAGAACTGTGGCGGTCGTCGTCATTATTGTAGTTaGAATTTCTGGGTCAATGTTCACATTAACTTTAAACATGGGATC +
Preference number: 5 (lower is better)
Translates to: NCGWQNCGGRRHYCS*NFWVNVHINFKHGI
Trigger: GATCCCATGTTTAAAGTTAATGTGAACATTGACCCAGAAATTTCAACTACAATAATGACGACGACCGCCACAGTTCTGCCATCCACAGTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106578.8
CDS CCA 72 bp TGTCAAGGAGCCCTGCTCCTGACCGCTCACCTCCTCTaGACCTGTGACTGGATCCTGAGCCGTGCAGCAGCC +
Preference number: 6 (lower is better)
Translates to: CQGALLLTAHLL*TCDWILSRAAA
Trigger: GGCTGCTGCACGGCTCAGGATCCAGTCACAGGTCCAGAGGAGGTGAGCGGTCAGGAGCAGGGCTCCTTGACA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092463.7
ENSMUST00000106578.8
CDS CCA 72 bp TGGACCTGTGACTGGATCCTGAGCCGTGCAGCAGCCTaGGAGGAAGAGGATGAGCAGAGCAGGGAACTGCCA +
Preference number: 6 (lower is better)
Translates to: WTCDWILSRAAA*EEEDEQSRELP
Trigger: TGGCAGTTCCCTGCTCTGCTCATCCTCTTCCTCCCAGGCTGCTGCACGGCTCAGGATCCAGTCACAGGTCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092463.7
ENSMUST00000106578.8
CDS CCA 72 bp TGTGGATGTCCGAACTGTGGATGGCAGAACTGTGGATaGCAGAACTGTGGATGTCCGAACTGTGGATGGCAG +
Preference number: 6 (lower is better)
Translates to: CGCPNCGWQNCG*QNCGCPNCGWQ
Trigger: CTGCCATCCACAGTTCGGACATCCACAGTTCTGCCATCCACAGTTCTGCCATCCACAGTTCGGACATCCACA
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106578.8
CDS CCA 72 bp TGCTCTCCATGGTTGGTGTTGTGGATGTCCGAACTGTaGATGTCCGAACTGTGGATGGCAGAACTGTGGATG +
Preference number: 6 (lower is better)
Translates to: CSPWLVLWMSEL*MSELWMAELWM
Trigger: CATCCACAGTTCTGCCATCCACAGTTCGGACATCCACAGTTCGGACATCCACAACACCAACCATGGAGAGCA
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106578.8
CDS TCA 72 bp ATGCTGCTCAACAGGGACCAGATGAAGAGAGTGTTCTaGGTCACCTGGCCAATGTTCTCTGTGCCAATGCTC +
Preference number: 6 (lower is better)
Translates to: MLLNRDQMKRVF*VTWPMFSVPML
Trigger: GAGCATTGGCACAGAGAACATTGGCCAGGTGACTCAGAACACTCTCTTCATCTGGTCCCTGTTGAGCAGCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106578.8
CDS GCA 72 bp AGAGAGTGTTCTGAGTCACCTGGCCAATGTTCTCTGTaGCAATGCTCTCCATGGTTGGTGTTGTGGATGTCC +
Preference number: 6 (lower is better)
Translates to: RECSESPGQCSL*QCSPWLVLWMS
Trigger: GGACATCCACAACACCAACCATGGAGAGCATTGGCACAGAGAACATTGGCCAGGTGACTCAGAACACTCTCT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106578.8
CDS CCA 72 bp TGTTCTCTGTGCCAATGCTCTCCATGGTTGGTGTTGTaGATGTCCGAACTGTGGATGTCCGAACTGTGGATG +
Preference number: 6 (lower is better)
Translates to: CSLCQCSPWLVL*MSELWMSELWM
Trigger: CATCCACAGTTCGGACATCCACAGTTCGGACATCCACAACACCAACCATGGAGAGCATTGGCACAGAGAACA
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106578.8
CDS TCA 72 bp TCAGCAAGAAGGAGATGCTGCTCAACAGGGACCAGATaGAGAGAGTGTTCTGAGTCACCTGGCCAATGTTCT +
Preference number: 6 (lower is better)
Translates to: SARRRCCSTGTR*RECSESPGQCS
Trigger: AGAACATTGGCCAGGTGACTCAGAACACTCTCTTCATCTGGTCCCTGTTGAGCAGCATCTCCTTCTTGCTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106578.8