Pregenerated sensors for CD300LD (Mus musculus)
Ensembl gene IDs: ENSMUSG00000034641Ensembl transcript IDs: ENSMUST00000045075.3
Found 77 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CCTGAGAGAGGGGCACATGAATGGGTTCCAGAACTCAGCTGTCCCTaGTATAGGAGTGGGATTAGTCTGAGTCTGGTTGTGCAGCACATC | + |
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Preference number: 1 (lower is better) Translates to: PERGAHEWVPELSCP*YRSGISLSLVVQHI Trigger: GATGTGCTGCACAACCAGACTCAGACTAATCCCACTCCTATAGCAGGGACAGCTGAGTTCTGGAACCCATTCATGTGCCCCTCTCTCAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| 3UTR CCA 90 bp | CCCCAGATAGGTATTGCAGGATGTCCTGAGAGAGGGGCACATGAATaGGTTCCAGAACTCAGCTGTCCCTGCTATAGGAGTGGGATTAGT | + |
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Preference number: 1 (lower is better) Translates to: PQIGIAGCPERGAHE*VPELSCPCYRSGIS Trigger: ACTAATCCCACTCCTATAGCAGGGACAGCTGAGTTCTGGAACCCATTCATGTGCCCCTCTCTCAGGACATCCTGCAATACCTATCTGGGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| 3UTR TCA 90 bp | GAGTTTAACCATGATTGTTGGTCTGAGCATGAGTGGGAATGTGGCTaGCTGACTGGCAGGTATACCCCTGAAGCAAATGAAAACCATCCT | + |
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Preference number: 1 (lower is better) Translates to: EFNHDCWSEHEWECG*LTGRYTPEANENHP Trigger: AGGATGGTTTTCATTTGCTTCAGGGGTATACCTGCCAGTCAGTCAGCCACATTCCCACTCATGCTCAGACCAACAATCATGGTTAAACTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| 3UTR TCA 90 bp | TTAACCATGATTGTTGGTCTGAGCATGAGTGGGAATGTGGCTGACTaGCTGGCAGGTATACCCCTGAAGCAAATGAAAACCATCCTCTTA | + |
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Preference number: 1 (lower is better) Translates to: LTMIVGLSMSGNVAD*LAGIPLKQMKTILL Trigger: TAAGAGGATGGTTTTCATTTGCTTCAGGGGTATACCTGCCAGTCAGTCAGCCACATTCCCACTCATGCTCAGACCAACAATCATGGTTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| 3UTR-3UTR TCA 90 bp | GTGTGTGTGTGTGTCCCACAGAGTTTAACCATGATTGTTGGTCTGAGCATGAGTGGAAGGGTTTGGGGGTaGTGTGGGTTCGTGACTCCT | + |
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Preference number: 2 (lower is better) Translates to: VCVCVPQSLTMIVGLSMSGRVWG*CGFVTP Trigger: AGGAGTCACGAACCCACATCACCCCCAAACCCTTCC...ACTCATGCTCAGACCAACAATCATGGTTAAACTCTGTGGGACACACACACACAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| 3UTR-3UTR TCA 90 bp | AGAACTCACTCTGTAAAGCAGACTGACCTAGAACTCAGAAATCCACCTGCCTCTCTGAGACTGGTGGGCTaGGACTACTCATTTCCCCTG | + |
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Preference number: 2 (lower is better) Translates to: RTHSVKQTDLELRNPPASLRLVG*DYSFPL Trigger: CAGGGGAAATGAGTAGTCTCAGCCCACCAGTCTCAG...AGAGGCAGGTGGATTTCTGAGTTCTAGGTCAGTCTGCTTTACAGAGTGAGTTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| 3UTR-3UTR GCA 90 bp | GGTTGTGCAGCACATCAGAGCCATGGTACTGCTGATGAGTTGTTCTTTACTAGATCCCACATACACATCTaGCCCGGCAAGGTGCATGCA | + |
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Preference number: 2 (lower is better) Translates to: GCAAHQSHGTADELFFTRSHIHI*PGKVHA Trigger: TGCATGCACCTTGCCGGGGCAGATGTGTATGTGGGA...TCTAGTAAAGAACAACTCATCAGCAGTACCATGGCTCTGATGTGCTGCACAACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| 3UTR-3UTR TCA 90 bp | AGTCCTAGAACTCACTCTGTAAAGCAGACTGACCTAGAACTCAGAAATCCACCTGAGTGGGAATGTGGCTaGCTGACTGGCAGGTATACC | + |
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Preference number: 2 (lower is better) Translates to: SPRTHSVKQTDLELRNPPEWECG*LTGRYT Trigger: GGTATACCTGCCAGTCAGTCAGCCACATTCCCACTC...AGGTGGATTTCTGAGTTCTAGGTCAGTCTGCTTTACAGAGTGAGTTCTAGGACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| 3UTR-3UTR CCA 90 bp | ACCTCCCCATTTGGTCTCACTGAGCAATCTAGATTTCAGGGACCAAGGCTTAACCTTGCAATCTCAGGATaGATGGTAGAGGCAGGGAGA | + |
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Preference number: 2 (lower is better) Translates to: TSPFGLTEQSRFQGPRLNLAISG*MVEAGR Trigger: TCTCCCTGCCTCTACCATCCATCCTGAGATTGCAAG...GTTAAGCCTTGGTCCCTGAAATCTAGATTGCTCAGTGAGACCAAATGGGGAGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| 3UTR-3UTR CCA 90 bp | GGTGTCAGAGCCCCACTCAAGAAGAAGACTGTGTCATGGTGCAGAACTCAGGATCCCGCAGTCTTATATTaGCATGTGTCCTCTAAGGAA | + |
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Preference number: 2 (lower is better) Translates to: GVRAPLKKKTVSWCRTQDPAVLY*HVSSKE Trigger: TTCCTTAGAGGACACATGCCAATATAAGACTGCGGG...ATCCTGAGTTCTGCACCATGACACAGTCTTCTTCTTGAGTGGGGCTCTGACACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| 3UTR CAA 90 bp | GCACATCAGAGCCATGGTACTGCTGATGAGTTGTTCTTTACTAGATaGAGTCTTCTCCAGATTGGGGAGATGGCTCAGCAGGTAAATCGC | + |
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Preference number: 2 (lower is better) Translates to: AHQSHGTADELFFTR*SLLQIGEMAQQVNR Trigger: GCGATTTACCTGCTGAGCCATCTCCCCAATCTGGAGAAGACTCAATCTAGTAAAGAACAACTCATCAGCAGTACCATGGCTCTGATGTGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| 3UTR CAA 90 bp | ACTCTTCTTCCACAAAGTTGGAGAACACCCATGTTAGTTGTGAATTaGGCTGTGGGTGTCAGAGCCCCACTCAAGAAGAAGACTGTGTCA | + |
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Preference number: 2 (lower is better) Translates to: TLLPQSWRTPMLVVN*AVGVRAPLKKKTVS Trigger: TGACACAGTCTTCTTCTTGAGTGGGGCTCTGACACCCACAGCCAAATTCACAACTAACATGGGTGTTCTCCAACTTTGTGGAAGAAGAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| 3UTR-3UTR CCA 90 bp | GAGACTGGTGGGCTGAGACTACTCATTTCCCCTGAGTATTTACCTTTGATCCCAACCACACAAAGGTGCTaGTCAATTAGAAACCCTGTC | + |
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Preference number: 2 (lower is better) Translates to: ETGGLRLLISPEYLPLIPTTQRC*SIRNPV Trigger: GACAGGGTTTCTAATTGACCAGCACCTTTGTGTGGT...TGGGATCAAAGGTAAATACTCAGGGGAAATGAGTAGTCTCAGCCCACCAGTCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| 3UTR-3UTR TCA 90 bp | GTGTGTGTGTGTCCCACAGAGTTTAACCATGATTGTTGGTCTGAGCATGAGTGGCTGAGTATTTACCTTTaGTCCCATTGGCCTTCTCTA | + |
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Preference number: 2 (lower is better) Translates to: VCVCPTEFNHDCWSEHEWLSIYL*SHWPSL Trigger: TAGAGAAGGCCAATGGGATCAAAGGTAAATACTCAG...CCACTCATGCTCAGACCAACAATCATGGTTAAACTCTGTGGGACACACACACAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| 3UTR-3UTR TCA 90 bp | AGTCCTAGAACTCACTCTGTAAAGCAGACTGACCTAGAACTCAGAAATCCACCTAACACATGTCATCACTaGGAAGATGCTAACCTGGGG | + |
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Preference number: 2 (lower is better) Translates to: SPRTHSVKQTDLELRNPPNTCHH*EDANLG Trigger: CCCCAGGTTAGCATCTTCTCAGTGATGACATGTGTT...AGGTGGATTTCTGAGTTCTAGGTCAGTCTGCTTTACAGAGTGAGTTCTAGGACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| 3UTR-3UTR GCA 90 bp | TCTGAGACTGGTGGGCTGAGACTACTCATTTCCCCTGAGTATTTACCTTTGATCCAGTGGCAAACTTTATaGTACTTGGTGAGGCCACAT | + |
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Preference number: 2 (lower is better) Translates to: SETGGLRLLISPEYLPLIQWQTL*YLVRPH Trigger: ATGTGGCCTCACCAAGTAGCATAAAGTTTGCCACTG...GATCAAAGGTAAATACTCAGGGGAAATGAGTAGTCTCAGCCCACCAGTCTCAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| 3UTR-3UTR GCA 90 bp | AGTCCTAGAACTCACTCTGTAAAGCAGACTGACCTAGAACTCAGAAATCCACCTGAGATTAAAGGCATGTaGTACCACTGCCTGACCTAC | + |
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Preference number: 2 (lower is better) Translates to: SPRTHSVKQTDLELRNPPEIKGM*YHCLTY Trigger: GTAGGTCAGGCAGTGGTAGCACATGCCTTTAATCTC...AGGTGGATTTCTGAGTTCTAGGTCAGTCTGCTTTACAGAGTGAGTTCTAGGACT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| 3UTR-3UTR CCA 90 bp | AGAACTCACTCTGTAAAGCAGACTGACCTAGAACTCAGAAATCCACCTGCCTCTTTTGGAAGTCATCAGTaGAAGATAGCCCCAGATAGG | + |
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Preference number: 2 (lower is better) Translates to: RTHSVKQTDLELRNPPASFGSHQ*KIAPDR Trigger: CCTATCTGGGGCTATCTTCCACTGATGACTTCCAAA...AGAGGCAGGTGGATTTCTGAGTTCTAGGTCAGTCTGCTTTACAGAGTGAGTTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| 3UTR-3UTR GCA 90 bp | AGTCCTAGAACTCACTCTGTAAAGCAGACTGACCTAGAACTCAGAAATCCACCTCCTACCACACAAAGGTaGTGGTCAATTAGAAACCCT | + |
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Preference number: 2 (lower is better) Translates to: SPRTHSVKQTDLELRNPPPTTQR*WSIRNP Trigger: AGGGTTTCTAATTGACCAGCACCTTTGTGTGGTAGG...AGGTGGATTTCTGAGTTCTAGGTCAGTCTGCTTTACAGAGTGAGTTCTAGGACT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| 3UTR-3UTR GCA 90 bp | ATACCCCTGAAGCAAATGAAAACCATCCTCTTAACAAGAGGCAAGCTCACTAGAGCACTCGTGTATGCTTaGAATCTCAGGATGGATGGT | + |
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Preference number: 2 (lower is better) Translates to: IPLKQMKTILLTRGKLTRALVYA*NLRMDG Trigger: ACCATCCATCCTGAGATTGCAAGCATACACGAGTGC...TCTAGTGAGCTTGCCTCTTGTTAAGAGGATGGTTTTCATTTGCTTCAGGGGTAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| 3UTR-3UTR GCA 90 bp | ACTCTTCTTCCACAAAGTTGGAGAACACCCATGTTAGTTGTGAATTTGGCTGTGGAACTCAGCTGTCCCTaGTATAGGAGTGGGATTAGT | + |
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Preference number: 2 (lower is better) Translates to: TLLPQSWRTPMLVVNLAVELSCP*YRSGIS Trigger: ACTAATCCCACTCCTATAGCAGGGACAGCTGAGTTC...CACAGCCAAATTCACAACTAACATGGGTGTTCTCCAACTTTGTGGAAGAAGAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| 3UTR CAA 90 bp | GGGCTGAGACTACTCATTTCCCCTGAGTATTTACCTTTGATCCCATaGGCCTTCTCTATGGACTTTAATTGGGTCTGTCTTATTTTGGAG | + |
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Preference number: 2 (lower is better) Translates to: GLRLLISPEYLPLIP*AFSMDFNWVCLILE Trigger: CTCCAAAATAAGACAGACCCAATTAAAGTCCATAGAGAAGGCCAATGGGATCAAAGGTAAATACTCAGGGGAAATGAGTAGTCTCAGCCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| 3UTR-3UTR CCA 90 bp | ATACCCCTGAAGCAAATGAAAACCATCCTCTTAACAAGAGGCAAGCTCACTAGAGGGTCTGTCTTATTTTaGAGCATGTATGTGGAGAGT | + |
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Preference number: 2 (lower is better) Translates to: IPLKQMKTILLTRGKLTRGSVLF*SMYVES Trigger: ACTCTCCACATACATGCTCCAAAATAAGACAGACCC...TCTAGTGAGCTTGCCTCTTGTTAAGAGGATGGTTTTCATTTGCTTCAGGGGTAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| 3UTR TCA 72 bp | GGCAGGGAGATCCCTGGAGTTCCCTGGCCAGCTGTCTaGCCTACCACACAAAGGTGCTGGTCAATTAGAAAC | + |
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Preference number: 3 (lower is better) Translates to: GREIPGVPWPAV*PTTQRCWSIRN Trigger: GTTTCTAATTGACCAGCACCTTTGTGTGGTAGGTCAGACAGCTGGCCAGGGAACTCCAGGGATCTCCCTGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| 3UTR CCA 72 bp | AAGCTAGGGCACTCGTGTATGCTTGCAATCTCAGGATaGATGGTAGAGGCAGGGAGATCCCTGGAGTTCCCT | + |
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Preference number: 3 (lower is better) Translates to: KLGHSCMLAISG*MVEAGRSLEFP Trigger: AGGGAACTCCAGGGATCTCCCTGCCTCTACCATCCATCCTGAGATTGCAAGCATACACGAGTGCCCTAGCTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| 3UTR CCA 72 bp | GGTATTGCAGGATGTCCTGAGAGAGGGGCACATGAATaGGTTCCAGAACTCAGCTGTCCCTGCTATAGGAGT | + |
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Preference number: 3 (lower is better) Translates to: GIAGCPERGAHE*VPELSCPCYRS Trigger: ACTCCTATAGCAGGGACAGCTGAGTTCTGGAACCCATTCATGTGCCCCTCTCTCAGGACATCCTGCAATACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| 3UTR-3UTR CAA 90 bp | GAGACTGGTGGGCTGAGACTACTCATTTCCCCTGAGTATTTACCTTTGATCCCACATTCCTGGAAGGGTTaGGGGGTGATGTGGGTTCGT | + |
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Preference number: 3 (lower is better) Translates to: ETGGLRLLISPEYLPLIPHSWKG*GVMWVR Trigger: ACGAACCCACATCACCCCCAAACCCTTCCAGGAATG...TGGGATCAAAGGTAAATACTCAGGGGAAATGAGTAGTCTCAGCCCACCAGTCTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| 3UTR TCA 72 bp | GACCTAGAACTCAGAAATCCACCTGCCTCTGCCTCCTaGGTGTTGAGATTAAAGGCATGTGCTACCACTGCC | + |
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Preference number: 3 (lower is better) Translates to: DLELRNPPASAS*VLRLKACATTA Trigger: GGCAGTGGTAGCACATGCCTTTAATCTCAACACTCAGGAGGCAGAGGCAGGTGGATTTCTGAGTTCTAGGTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| 3UTR TCA 72 bp | GCCATGGTACTGCTGATGAGTTGTTCTTTACTAGATTaGGTCTTCTCCAGATTGGGGAGATGGCTCAGCAGG | + |
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Preference number: 3 (lower is better) Translates to: AMVLLMSCSLLD*VFSRLGRWLSR Trigger: CCTGCTGAGCCATCTCCCCAATCTGGAGAAGACTCAATCTAGTAAAGAACAACTCATCAGCAGTACCATGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| 3UTR TCA 72 bp | GAGGCAAGCTCACTAGAGTCCAACACATGTCATCACTaGGAAGATGCTAACCTGGGGACTCTTCTTCCACAA | + |
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Preference number: 3 (lower is better) Translates to: EASSLESNTCHH*EDANLGTLLPQ Trigger: TTGTGGAAGAAGAGTCCCCAGGTTAGCATCTTCTCAGTGATGACATGTGTTGGACTCTAGTGAGCTTGCCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| 3UTR TCA 72 bp | ATTGTTGGTCTGAGCATGAGTGGGAATGTGGCTGACTaGCTGGCAGGTATACCCCTGAAGCAAATGAAAACC | + |
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Preference number: 3 (lower is better) Translates to: IVGLSMSGNVAD*LAGIPLKQMKT Trigger: GGTTTTCATTTGCTTCAGGGGTATACCTGCCAGTCAGTCAGCCACATTCCCACTCATGCTCAGACCAACAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| 3UTR CCA 72 bp | TTATGCTACTTGGTGAGGCCACATCACCGAGATATTTaGTCAATCAACTGGCTGGTGGCCCGCAGTCTTATA | + |
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Preference number: 3 (lower is better) Translates to: LCYLVRPHHRDI*SINWLVARSLI Trigger: TATAAGACTGCGGGCCACCAGCCAGTTGATTGACCAAATATCTCGGTGATGTGGCCTCACCAAGTAGCATAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| 3UTR-3UTR CAA 90 bp | GGTGTCAGAGCCCCACTCAAGAAGAAGACTGTGTCATGGTGCAGAACTCAGGATTTACCTTTGATCCCATaGGCCTTCTCTATGGACTTT | + |
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Preference number: 3 (lower is better) Translates to: GVRAPLKKKTVSWCRTQDLPLIP*AFSMDF Trigger: AAAGTCCATAGAGAAGGCCAATGGGATCAAAGGTAA...ATCCTGAGTTCTGCACCATGACACAGTCTTCTTCTTGAGTGGGGCTCTGACACC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| 3UTR-3UTR CAA 90 bp | TCTGAGACTGGTGGGCTGAGACTACTCATTTCCCCTGAGTATTTACCTTTGATCCAAACTTTATGCTACTaGGTGAGGCCACATCACCGA | + |
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Preference number: 3 (lower is better) Translates to: SETGGLRLLISPEYLPLIQTLCY*VRPHHR Trigger: TCGGTGATGTGGCCTCACCAAGTAGCATAAAGTTTG...GATCAAAGGTAAATACTCAGGGGAAATGAGTAGTCTCAGCCCACCAGTCTCAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| 3UTR-3UTR CAA 90 bp | GTGTGTGTGTGTCCCACAGAGTTTAACCATGATTGTTGGTCTGAGCATGAGTGGTGGGTCTGTCTTATTTaGGAGCATGTATGTGGAGAG | + |
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Preference number: 3 (lower is better) Translates to: VCVCPTEFNHDCWSEHEWWVCLI*EHVCGE Trigger: CTCTCCACATACATGCTCCAAAATAAGACAGACCCA...CCACTCATGCTCAGACCAACAATCATGGTTAAACTCTGTGGGACACACACACAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| 3UTR CCA 72 bp | AGTCCAACACATGTCATCACTGAGAAGATGCTAACCTaGGGACTCTTCTTCCACAAAGTTGGAGAACACCCA | + |
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Preference number: 3 (lower is better) Translates to: SPTHVITEKMLT*GLFFHKVGEHP Trigger: TGGGTGTTCTCCAACTTTGTGGAAGAAGAGTCCCCAGGTTAGCATCTTCTCAGTGATGACATGTGTTGGACT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| 3UTR TCA 72 bp | TTTCAGGGACCAAGGCTTAACTACTACTTGAAGACCTaGGCAGGTGGTACAAAGCTTAGGTCAACTACTCCA | + |
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Preference number: 3 (lower is better) Translates to: FQGPRLNYYLKT*AGGTKLRSTTP Trigger: TGGAGTAGTTGACCTAAGCTTTGTACCACCTGCTCAGGTCTTCAAGTAGTAGTTAAGCCTTGGTCCCTGAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| 3UTR-3UTR CAA 90 bp | GTGTGTGTGTGTGTCCCACAGAGTTTAACCATGATTGTTGGTCTGAGCATGAGTGGTACTGCTGATGAGTaGTTCTTTACTAGATTGAGT | + |
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Preference number: 3 (lower is better) Translates to: VCVCVPQSLTMIVGLSMSGTADE*FFTRLS Trigger: ACTCAATCTAGTAAAGAACAACTCATCAGCAGTACC...ACTCATGCTCAGACCAACAATCATGGTTAAACTCTGTGGGACACACACACACAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| 3UTR-3UTR CAA 90 bp | GTGTGTGTGTGTCCCACAGAGTTTAACCATGATTGTTGGTCTGAGCATGAGTGGCTTGTATTTTCTTCTTaGGAAGTCATCAGTGGAAGA | + |
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Preference number: 3 (lower is better) Translates to: VCVCPTEFNHDCWSEHEWLVFSS*EVISGR Trigger: TCTTCCACTGATGACTTCCAAAGAAGAAAATACAAG...CCACTCATGCTCAGACCAACAATCATGGTTAAACTCTGTGGGACACACACACAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| 3UTR CCA 72 bp | CCTTTGATCCCATTGGCCTTCTCTATGGACTTTAATTaGGTCTGTCTTATTTTGGAGCATGTATGTGGAGAG | + |
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Preference number: 3 (lower is better) Translates to: PLIPLAFSMDFN*VCLILEHVCGE Trigger: CTCTCCACATACATGCTCCAAAATAAGACAGACCCAATTAAAGTCCATAGAGAAGGCCAATGGGATCAAAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| 3UTR-3UTR CAA 90 bp | AATAAGGGACAGATAGCTAGTGTGACAGTGGCAAACTTTATGCTACTTGGTGAGTTGTTCTTTACTAGATaGAGTCTTCTCCAGATTGGG | + |
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Preference number: 3 (lower is better) Translates to: NKGQIASVTVANFMLLGELFFTR*SLLQIG Trigger: CCCAATCTGGAGAAGACTCAATCTAGTAAAGAACAA...CTCACCAAGTAGCATAAAGTTTGCCACTGTCACACTAGCTATCTGTCCCTTATT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| CDS-3UTR TCA 90 bp | ACCTCCCCATTTGGTCTCACTGAGCAATCTAGATTTCAGGGACCAAGGCTTAACCCTGTGACTGAATCCTaGGCCGTGCAGCAGCCTGGG | + |
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Preference number: 4 (lower is better) Translates to: TSPFGLTEQSRFQGPRLNPVTES*AVQQPG Trigger: CCCAGGCTGCTGCACGGCTCAGGATTCAGTCACAGG...GTTAAGCCTTGGTCCCTGAAATCTAGATTGCTCAGTGAGACCAAATGGGGAGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| CDS-3UTR GCA 90 bp | AAAAGGGAGAGAGTGGAAGGGCCTGGTGAAGAGACCATTCCTGGAAGGGTTTGGTCAGCAGGAAGTAGATaGTGCTCAGCAGGGACCTGG | + |
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Preference number: 4 (lower is better) Translates to: KRERVEGPGEETIPGRVWSAGSR*CSAGTW Trigger: CCAGGTCCCTGCTGAGCAGCATCTACTTCCTGCTGA...CCAAACCCTTCCAGGAATGGTCTCTTCACCAGGCCCTTCCACTCTCTCCCTTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| CDS-3UTR TCA 90 bp | GTGTGTGTGTGTCCCACAGAGTTTAACCATGATTGTTGGTCTGAGCATGAGTGGCCTCCTCTGGACCTGTaGCTGAATCCTGAGCCGTGC | + |
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Preference number: 4 (lower is better) Translates to: VCVCPTEFNHDCWSEHEWPPLDL*LNPEPC Trigger: GCACGGCTCAGGATTCAGTCACAGGTCCAGAGGAGG...CCACTCATGCTCAGACCAACAATCATGGTTAAACTCTGTGGGACACACACACAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| CDS-3UTR GCA 90 bp | AGTCCTAGAACTCACTCTGTAAAGCAGACTGACCTAGAACTCAGAAATCCACCTCTGAATCCTGAGCCGTaGAGCAGCCTGGGAGGAAGA | + |
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Preference number: 4 (lower is better) Translates to: SPRTHSVKQTDLELRNPPLNPEP*SSLGGR Trigger: TCTTCCTCCCAGGCTGCTGCACGGCTCAGGATTCAG...AGGTGGATTTCTGAGTTCTAGGTCAGTCTGCTTTACAGAGTGAGTTCTAGGACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| CDS-3UTR GCA 90 bp | AGAACTCACTCTGTAAAGCAGACTGACCTAGAACTCAGAAATCCACCTGCCTCTACCTGGTGTGGGGCCTaGTCTGAGTCACTTCTTTGC | + |
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Preference number: 4 (lower is better) Translates to: RTHSVKQTDLELRNPPASTWCGA*SESLLC Trigger: GCAAAGAAGTGACTCAGAGCAGGCCCCACACCAGGT...AGAGGCAGGTGGATTTCTGAGTTCTAGGTCAGTCTGCTTTACAGAGTGAGTTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| CDS-3UTR GCA 90 bp | AGAACTCACTCTGTAAAGCAGACTGACCTAGAACTCAGAAATCCACCTGCCTCTGCAGGAAGTAGATGCTaGTCAGCAGGGACCTGGTGT | + |
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Preference number: 4 (lower is better) Translates to: RTHSVKQTDLELRNPPASAGSRC*SAGTWC Trigger: ACACCAGGTCCCTGCTGAGCAGCATCTACTTCCTGC...AGAGGCAGGTGGATTTCTGAGTTCTAGGTCAGTCTGCTTTACAGAGTGAGTTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| CDS-3UTR CCA 90 bp | AATAAGGGACAGATAGCTAGTGTGACAGTGGCAAACTTTATGCTACTTGGTGAGAGCATCTCTGAGGCCTaGTCACCCAGAGGACAGCAC | + |
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Preference number: 4 (lower is better) Translates to: NKGQIASVTVANFMLLGESISEA*SPRGQH Trigger: GTGCTGTCCTCTGGGTGACCAGGCCTCAGAGATGCT...CTCACCAAGTAGCATAAAGTTTGCCACTGTCACACTAGCTATCTGTCCCTTATT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| 3UTR CAA 72 bp | TTTATGCTACTTGGTGAGGCCACATCACCGAGATATTaGGTCAATCAACTGGCTGGTGGCCCGCAGTCTTAT | + |
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Preference number: 4 (lower is better) Translates to: FMLLGEATSPRY*VNQLAGGPQSY Trigger: ATAAGACTGCGGGCCACCAGCCAGTTGATTGACCAAATATCTCGGTGATGTGGCCTCACCAAGTAGCATAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| 3UTR CAA 72 bp | CCACAAAGTTGGAGAACACCCATGTTAGTTGTGAATTaGGCTGTGGGTGTCAGAGCCCCACTCAAGAAGAAG | + |
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Preference number: 4 (lower is better) Translates to: PQSWRTPMLVVN*AVGVRAPLKKK Trigger: CTTCTTCTTGAGTGGGGCTCTGACACCCACAGCCAAATTCACAACTAACATGGGTGTTCTCCAACTTTGTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| CDS-3UTR TCA 90 bp | GAGACTGGTGGGCTGAGACTACTCATTTCCCCTGAGTATTTACCTTTGATCCCAGTCACTTCTTTGCTCTaGGTCACTTGTTCCTTGCCA | + |
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Preference number: 4 (lower is better) Translates to: ETGGLRLLISPEYLPLIPVTSLL*VTCSLP Trigger: TGGCAAGGAACAAGTGACTCAGAGCAAAGAAGTGAC...TGGGATCAAAGGTAAATACTCAGGGGAAATGAGTAGTCTCAGCCCACCAGTCTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| CDS-3UTR TCA 90 bp | GTGTGTGTGTGTGTCCCACAGAGTTTAACCATGATTGTTGGTCTGAGCATGAGTGTAACCCTTCCAGTATaGGGAATATCTGCACTGCAC | + |
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Preference number: 4 (lower is better) Translates to: VCVCVPQSLTMIVGLSMSVTLPV*GISALH Trigger: GTGCAGTGCAGATATTCCTCATACTGGAAGGGTTAC...ACTCATGCTCAGACCAACAATCATGGTTAAACTCTGTGGGACACACACACACAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| 3UTR CAA 72 bp | AGCCATGGTACTGCTGATGAGTTGTTCTTTACTAGATaGAGTCTTCTCCAGATTGGGGAGATGGCTCAGCAG | + |
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Preference number: 4 (lower is better) Translates to: SHGTADELFFTR*SLLQIGEMAQQ Trigger: CTGCTGAGCCATCTCCCCAATCTGGAGAAGACTCAATCTAGTAAAGAACAACTCATCAGCAGTACCATGGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| CDS-3UTR GCA 90 bp | AGTCCTAGAACTCACTCTGTAAAGCAGACTGACCTAGAACTCAGAAATCCACCTAGTATGAGGAATATCTaGACTGCACTGTCAAGGAGC | + |
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Preference number: 4 (lower is better) Translates to: SPRTHSVKQTDLELRNPPSMRNI*TALSRS Trigger: GCTCCTTGACAGTGCAGTGCAGATATTCCTCATACT...AGGTGGATTTCTGAGTTCTAGGTCAGTCTGCTTTACAGAGTGAGTTCTAGGACT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| CDS-3UTR CCA 90 bp | GGTTGTGCAGCACATCAGAGCCATGGTACTGCTGATGAGTTGTTCTTTACTAGAGAACTGTGGCTGTGGTaGTCATCATTGAACTTTTTG | + |
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Preference number: 4 (lower is better) Translates to: GCAAHQSHGTADELFFTRELWLW*SSLNFL Trigger: CAAAAAGTTCAATGATGACCACCACAGCCACAGTTC...TCTAGTAAAGAACAACTCATCAGCAGTACCATGGCTCTGATGTGCTGCACAACC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| CDS-3UTR CCA 90 bp | GGTTGTGCAGCACATCAGAGCCATGGTACTGCTGATGAGTTGTTCTTTACTAGATCAGAACTGTGGCTGTaGTGGTCATCATTGAACTTT | + |
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Preference number: 4 (lower is better) Translates to: GCAAHQSHGTADELFFTRSELWL*WSSLNF Trigger: AAAGTTCAATGATGACCACCACAGCCACAGTTCTGA...TCTAGTAAAGAACAACTCATCAGCAGTACCATGGCTCTGATGTGCTGCACAACC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| 3UTR CAA 72 bp | CTACTCATTTCCCCTGAGTATTTACCTTTGATCCCATaGGCCTTCTCTATGGACTTTAATTGGGTCTGTCTT | + |
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Preference number: 4 (lower is better) Translates to: LLISPEYLPLIP*AFSMDFNWVCL Trigger: AAGACAGACCCAATTAAAGTCCATAGAGAAGGCCAATGGGATCAAAGGTAAATACTCAGGGGAAATGAGTAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| CDS-3UTR CCA 90 bp | ATACCCCTGAAGCAAATGAAAACCATCCTCTTAACAAGAGGCAAGCTCACTAGAGAACTTTTTGGGGCTTaGTCAATGTTCACATTAACT | + |
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Preference number: 4 (lower is better) Translates to: IPLKQMKTILLTRGKLTRELFGA*SMFTLT Trigger: AGTTAATGTGAACATTGACCAAGCCCCAAAAAGTTC...TCTAGTGAGCTTGCCTCTTGTTAAGAGGATGGTTTTCATTTGCTTCAGGGGTAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| CDS TCA 90 bp | CTGTCAAGGAGCCCTGCTCCTGACCGCTCACCTCCTCTGGACCTGTaGCTGAATCCTGAGCCGTGCAGCAGCCTGGGAGGAAGAATAGGA | + |
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Preference number: 5 (lower is better) Translates to: LSRSPAPDRSPPLDL*LNPEPCSSLGGRIG Trigger: TCCTATTCTTCCTCCCAGGCTGCTGCACGGCTCAGGATTCAGTCACAGGTCCAGAGGAGGTGAGCGGTCAGGAGCAGGGCTCCTTGACAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| CDS-3UTR CAA 90 bp | ACCTCCCCATTTGGTCTCACTGAGCAATCTAGATTTCAGGGACCAAGGCTTAACATGAAGTCTCTCTGGTaGTCCCTGATGGACACACGG | + |
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Preference number: 5 (lower is better) Translates to: TSPFGLTEQSRFQGPRLNMKSLW*SLMDTR Trigger: CCGTGTGTCCATCAGGGACAACCAGAGAGACTTCAT...GTTAAGCCTTGGTCCCTGAAATCTAGATTGCTCAGTGAGACCAAATGGGGAGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| CDS CCA 90 bp | CAGTGTTCTCAGCGCTTGGTTGTATGGATTTCAGAACTGTGGCTGTaGTGGTCATCATTGAACTTTTTGGGGCTTGGTCAATGTTCACAT | + |
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Preference number: 5 (lower is better) Translates to: QCSQRLVVWISELWL*WSSLNFLGLGQCSH Trigger: ATGTGAACATTGACCAAGCCCCAAAAAGTTCAATGATGACCACCACAGCCACAGTTCTGAAATCCATACAACCAAGCGCTGAGAACACTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| CDS CCA 90 bp | TCTGAGTCACTTGTTCCTTGCCAGTGTTCTCAGCGCTTGGTTGTATaGATTTCAGAACTGTGGCTGTGGTGGTCATCATTGAACTTTTTG | + |
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Preference number: 5 (lower is better) Translates to: SESLVPCQCSQRLVV*ISELWLWWSSLNFL Trigger: CAAAAAGTTCAATGATGACCACCACAGCCACAGTTCTGAAATCCATACAACCAAGCGCTGAGAACACTGGCAAGGAACAAGTGACTCAGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| CDS-3UTR CAA 90 bp | GTGTGTGTGTGTCCCACAGAGTTTAACCATGATTGTTGGTCTGAGCATGAGTGGTCATCATTGAACTTTTaGGGGCTTGGTCAATGTTCA | + |
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Preference number: 5 (lower is better) Translates to: VCVCPTEFNHDCWSEHEWSSLNF*GLGQCS Trigger: TGAACATTGACCAAGCCCCAAAAAGTTCAATGATGA...CCACTCATGCTCAGACCAACAATCATGGTTAAACTCTGTGGGACACACACACAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| CDS TCA 90 bp | GCTTGGTTGTATGGATTTCAGAACTGTGGCTGTGGTGGTCATCATTaGACTTTTTGGGGCTTGGTCAATGTTCACATTAACTTTAAACAT | + |
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Preference number: 5 (lower is better) Translates to: AWLYGFQNCGCGGHH*TFWGLVNVHINFKH Trigger: ATGTTTAAAGTTAATGTGAACATTGACCAAGCCCCAAAAAGTTCAATGATGACCACCACAGCCACAGTTCTGAAATCCATACAACCAAGC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| CDS TCA 72 bp | AGCCCTGCTCCTGACCGCTCACCTCCTCTGGACCTGTaGCTGAATCCTGAGCCGTGCAGCAGCCTGGGAGGA | + |
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Preference number: 6 (lower is better) Translates to: SPAPDRSPPLDL*LNPEPCSSLGG Trigger: TCCTCCCAGGCTGCTGCACGGCTCAGGATTCAGTCACAGGTCCAGAGGAGGTGAGCGGTCAGGAGCAGGGCT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| CDS GCA 72 bp | GGGACCTGGTGTGGGGCCTGCTCTGAGTCACTTCTTTaGTCTGAGTCACTTGTTCCTTGCCAGTGTTCTCAG | + |
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Preference number: 6 (lower is better) Translates to: GTWCGACSESLL*SESLVPCQCSQ Trigger: CTGAGAACACTGGCAAGGAACAAGTGACTCAGAGCAAAGAAGTGACTCAGAGCAGGCCCCACACCAGGTCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| CDS CAA 90 bp | CCTGGTGTGGGGCCTGCTCTGAGTCACTTCTTTGCTCTGAGTCACTaGTTCCTTGCCAGTGTTCTCAGCGCTTGGTTGTATGGATTTCAG | + |
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Preference number: 6 (lower is better) Translates to: PGVGPALSHFFALSH*FLASVLSAWLYGFQ Trigger: CTGAAATCCATACAACCAAGCGCTGAGAACACTGGCAAGGAACAAGTGACTCAGAGCAAAGAAGTGACTCAGAGCAGGCCCCACACCAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| CDS CCA 72 bp | CTGAGTCACTTGTTCCTTGCCAGTGTTCTCAGCGCTTaGTTGTATGGATTTCAGAACTGTGGCTGTGGTGGT | + |
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Preference number: 6 (lower is better) Translates to: LSHLFLASVLSA*LYGFQNCGCGG Trigger: ACCACCACAGCCACAGTTCTGAAATCCATACAACCAAGCGCTGAGAACACTGGCAAGGAACAAGTGACTCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| CDS CAA 72 bp | TCTGAGTCACTTGTTCCTTGCCAGTGTTCTCAGCGCTaGGTTGTATGGATTTCAGAACTGTGGCTGTGGTGG | + |
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Preference number: 6 (lower is better) Translates to: SESLVPCQCSQR*VVWISELWLWW Trigger: CCACCACAGCCACAGTTCTGAAATCCATACAACCAAGCGCTGAGAACACTGGCAAGGAACAAGTGACTCAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| CDS CCA 72 bp | CTTGTTCCTTGCCAGTGTTCTCAGCGCTTGGTTGTATaGATTTCAGAACTGTGGCTGTGGTGGTCATCATTG | + |
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Preference number: 6 (lower is better) Translates to: LVPCQCSQRLVV*ISELWLWWSSL Trigger: CAATGATGACCACCACAGCCACAGTTCTGAAATCCATACAACCAAGCGCTGAGAACACTGGCAAGGAACAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| CDS CAA 72 bp | AGTCACTTGTTCCTTGCCAGTGTTCTCAGCGCTTGGTaGTATGGATTTCAGAACTGTGGCTGTGGTGGTCAT | + |
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Preference number: 6 (lower is better) Translates to: SHLFLASVLSAW*YGFQNCGCGGH Trigger: ATGACCACCACAGCCACAGTTCTGAAATCCATACAACCAAGCGCTGAGAACACTGGCAAGGAACAAGTGACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| CDS CAA 90 bp | CTTCTTTGCTCTGAGTCACTTGTTCCTTGCCAGTGTTCTCAGCGCTaGGTTGTATGGATTTCAGAACTGTGGCTGTGGTGGTCATCATTG | + |
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Preference number: 6 (lower is better) Translates to: LLCSESLVPCQCSQR*VVWISELWLWWSSL Trigger: CAATGATGACCACCACAGCCACAGTTCTGAAATCCATACAACCAAGCGCTGAGAACACTGGCAAGGAACAAGTGACTCAGAGCAAAGAAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| CDS CCA 72 bp | CAGCGCTTGGTTGTATGGATTTCAGAACTGTGGCTGTaGTGGTCATCATTGAACTTTTTGGGGCTTGGTCAA | + |
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Preference number: 6 (lower is better) Translates to: QRLVVWISELWL*WSSLNFLGLGQ Trigger: TTGACCAAGCCCCAAAAAGTTCAATGATGACCACCACAGCCACAGTTCTGAAATCCATACAACCAAGCGCTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| CDS CCA 72 bp | CGCTTGGTTGTATGGATTTCAGAACTGTGGCTGTGGTaGTCATCATTGAACTTTTTGGGGCTTGGTCAATGT | + |
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Preference number: 6 (lower is better) Translates to: RLVVWISELWLW*SSLNFLGLGQC Trigger: ACATTGACCAAGCCCCAAAAAGTTCAATGATGACCACCACAGCCACAGTTCTGAAATCCATACAACCAAGCG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| CDS CCA 72 bp | TGTTCTCAGCGCTTGGTTGTATGGATTTCAGAACTGTaGCTGTGGTGGTCATCATTGAACTTTTTGGGGCTT | + |
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Preference number: 6 (lower is better) Translates to: CSQRLVVWISEL*LWWSSLNFLGL Trigger: AAGCCCCAAAAAGTTCAATGATGACCACCACAGCCACAGTTCTGAAATCCATACAACCAAGCGCTGAGAACA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| CDS TCA 72 bp | TATGGATTTCAGAACTGTGGCTGTGGTGGTCATCATTaGACTTTTTGGGGCTTGGTCAATGTTCACATTAAC | + |
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Preference number: 6 (lower is better) Translates to: YGFQNCGCGGHH*TFWGLVNVHIN Trigger: GTTAATGTGAACATTGACCAAGCCCCAAAAAGTTCAATGATGACCACCACAGCCACAGTTCTGAAATCCATA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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| CDS CCA 72 bp | GTGGCTGTGGTGGTCATCATTGAACTTTTTGGGGCTTaGTCAATGTTCACATTAACTTTAAACATGGGATCA | + |
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Preference number: 6 (lower is better) Translates to: VAVVVIIELFGA*SMFTLTLNMGS Trigger: TGATCCCATGTTTAAAGTTAATGTGAACATTGACCAAGCCCCAAAAAGTTCAATGATGACCACCACAGCCAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000045075.3 |
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