RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CD300LB (Mus musculus)

Ensembl gene IDs: ENSMUSG00000063193

Ensembl transcript IDs: ENSMUST00000106581.5, ENSMUST00000149663.4, ENSMUST00000239005.2

Found 163 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GCTACCCTTGGCCTGACTTCCTCTGCAGTGCAGATGTATGCAGTATaGGCCAAGGGGAGTCCAGGTGGGAAGACATGGCTCTCTCTGCCT +
Preference number: 1 (lower is better)
Translates to: ATLGLTSSAVQMYAV*AKGSPGGKTWLSLP
Trigger: AGGCAGAGAGAGCCATGTCTTCCCACCTGGACTCCCCTTGGCCCATACTGCATACATCTGCACTGCAGAGGAAGTCAGGCCAAGGGTAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR GCA 90 bp TCTATGAGCTACCCTTGGCCTGACTTCCTCTGCAGTGCAGATGTATaGAGTATGGGCCAAGGGGAGTCCAGGTGGGAAGACATGGCTCTC +
Preference number: 1 (lower is better)
Translates to: SMSYPWPDFLCSADV*SMGQGESRWEDMAL
Trigger: GAGAGCCATGTCTTCCCACCTGGACTCCCCTTGGCCCATACTGCATACATCTGCACTGCAGAGGAAGTCAGGCCAAGGGTAGCTCATAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR GCA 90 bp GCTGTTGGTAGTTACTCTATGAGCTACCCTTGGCCTGACTTCCTCTaGAGTGCAGATGTATGCAGTATGGGCCAAGGGGAGTCCAGGTGG +
Preference number: 1 (lower is better)
Translates to: AVGSYSMSYPWPDFL*SADVCSMGQGESRW
Trigger: CCACCTGGACTCCCCTTGGCCCATACTGCATACATCTGCACTGCAGAGGAAGTCAGGCCAAGGGTAGCTCATAGAGTAACTACCAACAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR TCA 90 bp TCGTGGCCTCTACCTTCCTGGCTGGTGCTGTTGGTAGTTACTCTATaGGCTACCCTTGGCCTGACTTCCTCTGCAGTGCAGATGTATGCA +
Preference number: 1 (lower is better)
Translates to: SWPLPSWLVLLVVTL*ATLGLTSSAVQMYA
Trigger: TGCATACATCTGCACTGCAGAGGAAGTCAGGCCAAGGGTAGCTCATAGAGTAACTACCAACAGCACCAGCCAGGAAGGTAGAGGCCACGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR TCA 90 bp AAGGAATTCTGTCATCCACTGGAAGGTGGATGGTCCTTGGGGACGTaGCTGATGCTAAGGCAAAGCAACCCCAGAACGATAGACACCTCT +
Preference number: 1 (lower is better)
Translates to: KEFCHPLEGGWSLGT*LMLRQSNPRTIDTS
Trigger: AGAGGTGTCTATCGTTCTGGGGTTGCTTTGCCTTAGCATCAGTCACGTCCCCAAGGACCATCCACCTTCCAGTGGATGACAGAATTCCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR CCA 90 bp TTTCCTCAGAAGTGCACGCTAGGGGCGGGCTCAGTGTCCAGAACATaGAGAATGAACGCTTGCTCTGCTTTCACAGAGTTTCCTATGACA +
Preference number: 1 (lower is better)
Translates to: FPQKCTLGAGSVSRT*RMNACSAFTEFPMT
Trigger: TGTCATAGGAAACTCTGTGAAAGCAGAGCAAGCGTTCATTCTCCATGTTCTGGACACTGAGCCCGCCCCTAGCGTGCACTTCTGAGGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR GCA 90 bp TCTTGCAAGATGAGACTGTTCTGGAGATATGATGTCTTTGCAATGTaGACATCAGCTCTGTGCTGTGCAACGGAAGCACCTCGCAAAAGG +
Preference number: 1 (lower is better)
Translates to: SCKMRLFWRYDVFAM*TSALCCATEAPRKR
Trigger: CCTTTTGCGAGGTGCTTCCGTTGCACAGCACAGAGCTGATGTGCACATTGCAAAGACATCATATCTCCAGAACAGTCTCATCTTGCAAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR TCA 90 bp CTTTCCTCCCTTTTATTCAGTCTGAGATCCCAGGTTATGGGATGGTaGGTGTCCACAATCAGGGTGGGTCATCCTTCCTCAGTTAAACTT +
Preference number: 1 (lower is better)
Translates to: LSSLLFSLRSQVMGW*VSTIRVGHPSSVKL
Trigger: AAGTTTAACTGAGGAAGGATGACCCACCCTGATTGTGGACACTCACCATCCCATAACCTGGGATCTCAGACTGAATAAAAGGGAGGAAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR CCA 90 bp TGCTCAGTAGGCTTAGAGTCTGAGTCTTGCAAGATGAGACTGTTCTaGAGATATGATGTCTTTGCAATGTGCACATCAGCTCTGTGCTGT +
Preference number: 1 (lower is better)
Translates to: CSVGLESESCKMRLF*RYDVFAMCTSALCC
Trigger: ACAGCACAGAGCTGATGTGCACATTGCAAAGACATCATATCTCCAGAACAGTCTCATCTTGCAAGACTCAGACTCTAAGCCTACTGAGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR TCA 90 bp CTCTGTAACATTATCCACAAAGGCCAAGAACAGACAAAACACCTGTaGGTAAATGAGCAGAGGAAGAAAGTGTGGTATATCCACACAGTG +
Preference number: 1 (lower is better)
Translates to: LCNIIHKGQEQTKHL*VNEQRKKVWYIHTV
Trigger: CACTGTGTGGATATACCACACTTTCTTCCTCTGCTCATTTACTCACAGGTGTTTTGTCTGTTCTTGGCCTTTGTGGATAATGTTACAGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR GCA 90 bp TTGTTCTTAGGAAGGAAAGAGAGACGGACCAATGGATGTTCAGTTTaGTTTATCTCTTTCCTCCCTTTTATTCAGTCTGAGATCCCAGGT +
Preference number: 1 (lower is better)
Translates to: LFLGRKERRTNGCSV*FISFLPFIQSEIPG
Trigger: ACCTGGGATCTCAGACTGAATAAAAGGGAGGAAAGAGATAAAGCAAACTGAACATCCATTGGTCCGTCTCTCTTTCCTTCCTAAGAACAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR CCA 90 bp CCAAAAGATTACAATGAGGATTGTCACGTGACCCAGCAATACTCTTaGGTATACATGCTAATTACTTGTGTCACTGCTGTGACAAAACAC +
Preference number: 1 (lower is better)
Translates to: PKDYNEDCHVTQQYS*VYMLITCVTAVTKH
Trigger: GTGTTTTGTCACAGCAGTGACACAAGTAATTAGCATGTATACCCAAGAGTATTGCTGGGTCACGTGACAATCCTCATTGTAATCTTTTGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR TCA 90 bp AGGGTTGTAATCGCAAATAAGCAGACAGAAAACAGTAAATGTAGATaGAGTATGTGGAGAACTTGGAATGTTTACATCCTGTTGGTGGGA +
Preference number: 1 (lower is better)
Translates to: RVVIANKQTENSKCR*SMWRTWNVYILLVG
Trigger: TCCCACCAACAGGATGTAAACATTCCAAGTTCTCCACATACTTCATCTACATTTACTGTTTTCTGTCTGCTTATTTGCGATTACAACCCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR TCA 90 bp AAATCGACAATCAAGATTAACCATCACAATCATAGGCAAGAGAACTaGAGACAGCATCTTAAAGTGAAACCTTCACCTATACACTCATGC +
Preference number: 1 (lower is better)
Translates to: KSTIKINHHNHRQEN*RQHLKVKPSPIHSC
Trigger: GCATGAGTGTATAGGTGAAGGTTTCACTTTAAGATGCTGTCTTCAGTTCTCTTGCCTATGATTGTGATGGTTAATCTTGATTGTCGATTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR CCA 90 bp TGGGCCTGTCGGGCAGGCGTTAGTCTTCTCCTTTCCTCAGAAGTGCACGCTAGGTCCAGGCACCAGCCTTaGTCACCACCCACCGAGGAT +
Preference number: 2 (lower is better)
Translates to: WACRAGVSLLLSSEVHARSRHQP*SPPTED
Trigger: ATCCTCGGTGGGTGGTGACCAAGGCTGGTGCCTGGA...CCTAGCGTGCACTTCTGAGGAAAGGAGAAGACTAACGCCTGCCCGACAGGCCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR CCA 90 bp AGCAGGGGACCATTCTCGTGGCCTCTACCTTCCTGGCTGGTGCTGTTGGTAGTTCAAGGGGAGTCCAGGTaGGAAGACATGGCTCTCTCT +
Preference number: 2 (lower is better)
Translates to: SRGPFSWPLPSWLVLLVVQGESR*EDMALS
Trigger: AGAGAGAGCCATGTCTTCCCACCTGGACTCCCCTTG...AACTACCAACAGCACCAGCCAGGAAGGTAGAGGCCACGAGAATGGTCCCCTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR TCA 90 bp GGTCTAGACACCCCACTGGTCCCTTATGCTTTTCTGTGCTTCTGTTCCAGGCCCGATTCTCACCCTGGTTaGCCATGGTGGGTAGATGGG +
Preference number: 2 (lower is better)
Translates to: GLDTPLVPYAFLCFCSRPDSHPG*PWWVDG
Trigger: CCCATCTACCCACCATGGTCAACCAGGGTGAGAATC...GGGCCTGGAACAGAAGCACAGAAAAGCATAAGGGACCAGTGGGGTGTCTAGACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR CCA 90 bp TGGGCCTGTCGGGCAGGCGTTAGTCTTCTCCTTTCCTCAGAAGTGCACGCTAGGACCATGGTGGGTAGATaGGGTAGGGCTGATGAAGAT +
Preference number: 2 (lower is better)
Translates to: WACRAGVSLLLSSEVHARTMVGR*GRADED
Trigger: ATCTTCATCAGCCCTACCCCATCTACCCACCATGGT...CCTAGCGTGCACTTCTGAGGAAAGGAGAAGACTAACGCCTGCCCGACAGGCCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR TCA 90 bp GGCGTTAGTCTTCTCCTTTCCTCAGAAGTGCACGCTAGGGGCGGGCTCAGTGTCGATGTAAAGAGAGAGTaGGGTGCTGGTCATGCAGTT +
Preference number: 2 (lower is better)
Translates to: GVSLLLSSEVHARGGLSVDVKRE*GAGHAV
Trigger: AACTGCATGACCAGCACCTCACTCTCTCTTTACATC...GACACTGAGCCCGCCCCTAGCGTGCACTTCTGAGGAAAGGAGAAGACTAACGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR GCA 90 bp TTAGTCTTCTCCTTTCCTCAGAAGTGCACGCTAGGGGCGGGCTCAGTGTCCAGAGCACAGCTGTCTTTCTaGAGCTTGGGCTGTGTTCCA +
Preference number: 2 (lower is better)
Translates to: LVFSFPQKCTLGAGSVSRAQLSF*SLGCVP
Trigger: TGGAACACAGCCCAAGCTGCAGAAAGACAGCTGTGC...TCTGGACACTGAGCCCGCCCCTAGCGTGCACTTCTGAGGAAAGGAGAAGACTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR GCA 90 bp AGCAGGGGACCATTCTCGTGGCCTCTACCTTCCTGGCTGGTGCTGTTGGTAGTTTGGCCTGACTTCCTCTaGAGTGCAGATGTATGCAGT +
Preference number: 2 (lower is better)
Translates to: SRGPFSWPLPSWLVLLVVWPDFL*SADVCS
Trigger: ACTGCATACATCTGCACTGCAGAGGAAGTCAGGCCA...AACTACCAACAGCACCAGCCAGGAAGGTAGAGGCCACGAGAATGGTCCCCTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR CCA 90 bp GGCGTTAGTCTTCTCCTTTCCTCAGAAGTGCACGCTAGGGGCGGGCTCAGTGTCAGGACATTTCTTCCCTaGTCCTGGTCTCCTCTGAAA +
Preference number: 2 (lower is better)
Translates to: GVSLLLSSEVHARGGLSVRTFLP*SWSPLK
Trigger: TTTCAGAGGAGACCAGGACCAGGGAAGAAATGTCCT...GACACTGAGCCCGCCCCTAGCGTGCACTTCTGAGGAAAGGAGAAGACTAACGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR CCA 90 bp AGCAGGGGACCATTCTCGTGGCCTCTACCTTCCTGGCTGGTGCTGTTGGTAGTTACCATGGTGGGTAGATaGGGTAGGGCTGATGAAGAT +
Preference number: 2 (lower is better)
Translates to: SRGPFSWPLPSWLVLLVVTMVGR*GRADED
Trigger: ATCTTCATCAGCCCTACCCCATCTACCCACCATGGT...AACTACCAACAGCACCAGCCAGGAAGGTAGAGGCCACGAGAATGGTCCCCTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR GCA 90 bp GATCCCAGGTTATGGGATGGTGAGTGTCCACAATCAGGGTGGGTCATCCTTCCTGCACAGCTGTCTTTCTaGAGCTTGGGCTGTGTTCCA +
Preference number: 2 (lower is better)
Translates to: DPRLWDGECPQSGWVILPAQLSF*SLGCVP
Trigger: TGGAACACAGCCCAAGCTGCAGAAAGACAGCTGTGC...AGGAAGGATGACCCACCCTGATTGTGGACACTCACCATCCCATAACCTGGGATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR GCA 90 bp GCTGTGCAACGGAAGCACCTCGCAAAAGGCAGAGTTCATGTTAAGTTTCTTCCCTCCTTTCCTCAGAAGTaGACGCTAGGGGCGGGCTCA +
Preference number: 2 (lower is better)
Translates to: AVQRKHLAKGRVHVKFLPSFPQK*TLGAGS
Trigger: TGAGCCCGCCCCTAGCGTGCACTTCTGAGGAAAGGA...GGGAAGAAACTTAACATGAACTCTGCCTTTTGCGAGGTGCTTCCGTTGCACAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR CCA 90 bp AGCAGGGGACCATTCTCGTGGCCTCTACCTTCCTGGCTGGTGCTGTTGGTAGTTAGGACATTTCTTCCCTaGTCCTGGTCTCCTCTGAAA +
Preference number: 2 (lower is better)
Translates to: SRGPFSWPLPSWLVLLVVRTFLP*SWSPLK
Trigger: TTTCAGAGGAGACCAGGACCAGGGAAGAAATGTCCT...AACTACCAACAGCACCAGCCAGGAAGGTAGAGGCCACGAGAATGGTCCCCTGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR CCA 90 bp GGTCTAGACACCCCACTGGTCCCTTATGCTTTTCTGTGCTTCTGTTCCAGGCCCACCATGGTGGGTAGATaGGGTAGGGCTGATGAAGAT +
Preference number: 2 (lower is better)
Translates to: GLDTPLVPYAFLCFCSRPTMVGR*GRADED
Trigger: ATCTTCATCAGCCCTACCCCATCTACCCACCATGGT...GGGCCTGGAACAGAAGCACAGAAAAGCATAAGGGACCAGTGGGGTGTCTAGACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR TCA 90 bp AGCAGGGGACCATTCTCGTGGCCTCTACCTTCCTGGCTGGTGCTGTTGGTAGTTGTCATGCAGTTGAGATaGTACTTCAGGAAGATCCTG +
Preference number: 2 (lower is better)
Translates to: SRGPFSWPLPSWLVLLVVVMQLR*YFRKIL
Trigger: CAGGATCTTCCTGAAGTATCATCTCAACTGCATGAC...AACTACCAACAGCACCAGCCAGGAAGGTAGAGGCCACGAGAATGGTCCCCTGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR TCA 90 bp GATCCCAGGTTATGGGATGGTGAGTGTCCACAATCAGGGTGGGTCATCCTTCCTTCAAAGATAACCCTGTaGGCAGGGGACCATTCTCGT +
Preference number: 2 (lower is better)
Translates to: DPRLWDGECPQSGWVILPSKITL*AGDHSR
Trigger: ACGAGAATGGTCCCCTGCTCACAGGGTTATCTTTGA...AGGAAGGATGACCCACCCTGATTGTGGACACTCACCATCCCATAACCTGGGATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR GCA 90 bp GTTGGTAGTTACTCTATGAGCTACCCTTGGCCTGACTTCCTCTGCAGTGCAGATAGACATGGCTCTCTCTaGCTCCTGAGCTCTCTGCTG +
Preference number: 2 (lower is better)
Translates to: VGSYSMSYPWPDFLCSADRHGSL*LLSSLL
Trigger: CAGCAGAGAGCTCAGGAGGCAGAGAGAGCCATGTCT...ATCTGCACTGCAGAGGAAGTCAGGCCAAGGGTAGCTCATAGAGTAACTACCAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR CCA 90 bp GTTGGTAGTTACTCTATGAGCTACCCTTGGCCTGACTTCCTCTGCAGTGCAGATCAAGGGGAGTCCAGGTaGGAAGACATGGCTCTCTCT +
Preference number: 2 (lower is better)
Translates to: VGSYSMSYPWPDFLCSADQGESR*EDMALS
Trigger: AGAGAGAGCCATGTCTTCCCACCTGGACTCCCCTTG...ATCTGCACTGCAGAGGAAGTCAGGCCAAGGGTAGCTCATAGAGTAACTACCAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR TCA 90 bp TTAGTCTTCTCCTTTCCTCAGAAGTGCACGCTAGGGGCGGGCTCAGTGTCCAGAGTCATGCAGTTGAGATaGTACTTCAGGAAGATCCTG +
Preference number: 2 (lower is better)
Translates to: LVFSFPQKCTLGAGSVSRVMQLR*YFRKIL
Trigger: CAGGATCTTCCTGAAGTATCATCTCAACTGCATGAC...TCTGGACACTGAGCCCGCCCCTAGCGTGCACTTCTGAGGAAAGGAGAAGACTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR TCA 90 bp GATTACAATGAGGATTGTCACGTGACCCAGCAATACTCTTGGGTATACATGCTAGTAGCCAGGGCCTGGTaGGGTGAGGTAGTGTTGGGG +
Preference number: 2 (lower is better)
Translates to: DYNEDCHVTQQYSWVYMLVARAW*GEVVLG
Trigger: CCCCAACACTACCTCACCTCACCAGGCCCTGGCTAC...TAGCATGTATACCCAAGAGTATTGCTGGGTCACGTGACAATCCTCATTGTAATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR GCA 90 bp GAAGGGAGGCATTGCTCAGTAGGCTTAGAGTCTGAGTCTTGCAAGATGAGACTGGCACAGCTGTCTTTCTaGAGCTTGGGCTGTGTTCCA +
Preference number: 2 (lower is better)
Translates to: EGRHCSVGLESESCKMRLAQLSF*SLGCVP
Trigger: TGGAACACAGCCCAAGCTGCAGAAAGACAGCTGTGC...CAGTCTCATCTTGCAAGACTCAGACTCTAAGCCTACTGAGCAATGCCTCCCTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR GCA 90 bp TGGGCCTGTCGGGCAGGCGTTAGTCTTCTCCTTTCCTCAGAAGTGCACGCTAGGAATGAACGCTTGCTCTaGTTTCACAGAGTTTCCTAT +
Preference number: 2 (lower is better)
Translates to: WACRAGVSLLLSSEVHARNERLL*FHRVSY
Trigger: ATAGGAAACTCTGTGAAAGCAGAGCAAGCGTTCATT...CCTAGCGTGCACTTCTGAGGAAAGGAGAAGACTAACGCCTGCCCGACAGGCCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR GCA 90 bp GATCCCAGGTTATGGGATGGTGAGTGTCCACAATCAGGGTGGGTCATCCTTCCTGATCCTCAAGTTCTCTaGAATCTAGATCCTGGGCCT +
Preference number: 2 (lower is better)
Translates to: DPRLWDGECPQSGWVILPDPQVL*NLDPGP
Trigger: AGGCCCAGGATCTAGATTGCAGAGAACTTGAGGATC...AGGAAGGATGACCCACCCTGATTGTGGACACTCACCATCCCATAACCTGGGATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR CCA 90 bp GGTCTAGACACCCCACTGGTCCCTTATGCTTTTCTGTGCTTCTGTTCCAGGCCCAATGAGAGTCCAGAATaGGAAGGCTCTGCTTATCCA +
Preference number: 2 (lower is better)
Translates to: GLDTPLVPYAFLCFCSRPNESPE*EGSAYP
Trigger: TGGATAAGCAGAGCCTTCCCATTCTGGACTCTCATT...GGGCCTGGAACAGAAGCACAGAAAAGCATAAGGGACCAGTGGGGTGTCTAGACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR TCA 90 bp GAAGGAAAGAGAGACGGACCAATGGATGTTCAGTTTGCTTTATCTCTTTCCTCCGAGCTACCCTTGGCCTaGCTTCCTCTGCAGTGCAGA +
Preference number: 2 (lower is better)
Translates to: EGKRDGPMDVQFALSLSSELPLA*LPLQCR
Trigger: TCTGCACTGCAGAGGAAGTCAGGCCAAGGGTAGCTC...GGAGGAAAGAGATAAAGCAAACTGAACATCCATTGGTCCGTCTCTCTTTCCTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR GCA 90 bp GAAGGAAAGAGAGACGGACCAATGGATGTTCAGTTTGCTTTATCTCTTTCCTCCTCCTTTCCTCAGAAGTaGACGCTAGGGGCGGGCTCA +
Preference number: 2 (lower is better)
Translates to: EGKRDGPMDVQFALSLSSSFPQK*TLGAGS
Trigger: TGAGCCCGCCCCTAGCGTGCACTTCTGAGGAAAGGA...GGAGGAAAGAGATAAAGCAAACTGAACATCCATTGGTCCGTCTCTCTTTCCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR GCA 90 bp GAAGGGAGGCATTGCTCAGTAGGCTTAGAGTCTGAGTCTTGCAAGATGAGACTGATCTATTTAAGGCTGTaGAGCCTTCTGCCCCTGACC +
Preference number: 2 (lower is better)
Translates to: EGRHCSVGLESESCKMRLIYLRL*SLLPLT
Trigger: GGTCAGGGGCAGAAGGCTGCACAGCCTTAAATAGAT...CAGTCTCATCTTGCAAGACTCAGACTCTAAGCCTACTGAGCAATGCCTCCCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR CCA 90 bp GAAGGAAAGAGAGACGGACCAATGGATGTTCAGTTTGCTTTATCTCTTTCCTCCCCAGGTGGGAAGACATaGCTCTCTCTGCCTCCTGAG +
Preference number: 2 (lower is better)
Translates to: EGKRDGPMDVQFALSLSSPGGKT*LSLPPE
Trigger: CTCAGGAGGCAGAGAGAGCCATGTCTTCCCACCTGG...GGAGGAAAGAGATAAAGCAAACTGAACATCCATTGGTCCGTCTCTCTTTCCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR CCA 90 bp GAAGGGAGGCATTGCTCAGTAGGCTTAGAGTCTGAGTCTTGCAAGATGAGACTGTCTATGAGCTACCCTTaGCCTGACTTCCTCTGCAGT +
Preference number: 2 (lower is better)
Translates to: EGRHCSVGLESESCKMRLSMSYP*PDFLCS
Trigger: ACTGCAGAGGAAGTCAGGCCAAGGGTAGCTCATAGA...CAGTCTCATCTTGCAAGACTCAGACTCTAAGCCTACTGAGCAATGCCTCCCTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR CCA 90 bp GATCCCAGGTTATGGGATGGTGAGTGTCCACAATCAGGGTGGGTCATCCTTCCTCAGAGGAAGAAAGTGTaGTATATCCACACAGTGGGA +
Preference number: 2 (lower is better)
Translates to: DPRLWDGECPQSGWVILPQRKKV*YIHTVG
Trigger: TCCCACTGTGTGGATATACCACACTTTCTTCCTCTG...AGGAAGGATGACCCACCCTGATTGTGGACACTCACCATCCCATAACCTGGGATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR CAA 90 bp GTGACAAAACACCTGAGAAAAGAGACTGAAGGGAGGAAGGAAGGTTaGTGTTGGCTCATGGTTGGAAGGGCTACAGTCCATCACGTTGTG +
Preference number: 2 (lower is better)
Translates to: VTKHLRKETEGRKEG*CWLMVGRATVHHVV
Trigger: CACAACGTGATGGACTGTAGCCCTTCCAACCATGAGCCAACACAAACCTTCCTTCCTCCCTTCAGTCTCTTTTCTCAGGTGTTTTGTCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR TCA 90 bp GCTGTGCAACGGAAGCACCTCGCAAAAGGCAGAGTTCATGTTAAGTTTCTTCCCGATGTAAAGAGAGAGTaGGGTGCTGGTCATGCAGTT +
Preference number: 2 (lower is better)
Translates to: AVQRKHLAKGRVHVKFLPDVKRE*GAGHAV
Trigger: AACTGCATGACCAGCACCTCACTCTCTCTTTACATC...GGGAAGAAACTTAACATGAACTCTGCCTTTTGCGAGGTGCTTCCGTTGCACAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR TCA 90 bp GGTGAGTGTCCACAATCAGGGTGGGTCATCCTTCCTCAGTTAAACTTCTTTGGATCAAAGATAACCCTGTaGGCAGGGGACCATTCTCGT +
Preference number: 2 (lower is better)
Translates to: GECPQSGWVILPQLNFFGSKITL*AGDHSR
Trigger: ACGAGAATGGTCCCCTGCTCACAGGGTTATCTTTGA...TCCAAAGAAGTTTAACTGAGGAAGGATGACCCACCCTGATTGTGGACACTCACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR GCA 90 bp GGTGAGTGTCCACAATCAGGGTGGGTCATCCTTCCTCAGTTAAACTTCTTTGGACCTTATGCTTTTCTGTaGTTCTGTTCCAGGCCCTGC +
Preference number: 2 (lower is better)
Translates to: GECPQSGWVILPQLNFFGPYAFL*FCSRPC
Trigger: GCAGGGCCTGGAACAGAAGCACAGAAAAGCATAAGG...TCCAAAGAAGTTTAACTGAGGAAGGATGACCCACCCTGATTGTGGACACTCACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR GCA 90 bp GAAGGGAGGCATTGCTCAGTAGGCTTAGAGTCTGAGTCTTGCAAGATGAGACTGCCCACTGGTCCCTTATaGTTTTCTGTGCTTCTGTTC +
Preference number: 2 (lower is better)
Translates to: EGRHCSVGLESESCKMRLPTGPL*FSVLLF
Trigger: GAACAGAAGCACAGAAAAGCATAAGGGACCAGTGGG...CAGTCTCATCTTGCAAGACTCAGACTCTAAGCCTACTGAGCAATGCCTCCCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR GCA 90 bp AGTGCAGATGTATGCAGTATGGGCCAAGGGGAGTCCAGGTGGGAAGACATGGCTAATGAACGCTTGCTCTaGTTTCACAGAGTTTCCTAT +
Preference number: 2 (lower is better)
Translates to: SADVCSMGQGESRWEDMANERLL*FHRVSY
Trigger: ATAGGAAACTCTGTGAAAGCAGAGCAAGCGTTCATT...AGCCATGTCTTCCCACCTGGACTCCCCTTGGCCCATACTGCATACATCTGCACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR GCA 90 bp GAAGGGAGGCATTGCTCAGTAGGCTTAGAGTCTGAGTCTTGCAAGATGAGACTGGATCCTCAAGTTCTCTaGAATCTAGATCCTGGGCCT +
Preference number: 2 (lower is better)
Translates to: EGRHCSVGLESESCKMRLDPQVL*NLDPGP
Trigger: AGGCCCAGGATCTAGATTGCAGAGAACTTGAGGATC...CAGTCTCATCTTGCAAGACTCAGACTCTAAGCCTACTGAGCAATGCCTCCCTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR GCA 90 bp GGTGAGTGTCCACAATCAGGGTGGGTCATCCTTCCTCAGTTAAACTTCTTTGGAATCTATTTAAGGCTGTaGAGCCTTCTGCCCCTGACC +
Preference number: 2 (lower is better)
Translates to: GECPQSGWVILPQLNFFGIYLRL*SLLPLT
Trigger: GGTCAGGGGCAGAAGGCTGCACAGCCTTAAATAGAT...TCCAAAGAAGTTTAACTGAGGAAGGATGACCCACCCTGATTGTGGACACTCACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR CCA 90 bp GGTGAGTGTCCACAATCAGGGTGGGTCATCCTTCCTCAGTTAAACTTCTTTGGATCTATGAGCTACCCTTaGCCTGACTTCCTCTGCAGT +
Preference number: 2 (lower is better)
Translates to: GECPQSGWVILPQLNFFGSMSYP*PDFLCS
Trigger: ACTGCAGAGGAAGTCAGGCCAAGGGTAGCTCATAGA...TCCAAAGAAGTTTAACTGAGGAAGGATGACCCACCCTGATTGTGGACACTCACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR TCA 90 bp GAAGGGAGGCATTGCTCAGTAGGCTTAGAGTCTGAGTCTTGCAAGATGAGACTGGTCATGCAGTTGAGATaGTACTTCAGGAAGATCCTG +
Preference number: 2 (lower is better)
Translates to: EGRHCSVGLESESCKMRLVMQLR*YFRKIL
Trigger: CAGGATCTTCCTGAAGTATCATCTCAACTGCATGAC...CAGTCTCATCTTGCAAGACTCAGACTCTAAGCCTACTGAGCAATGCCTCCCTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR TCA 90 bp GGTGAGTGTCCACAATCAGGGTGGGTCATCCTTCCTCAGTTAAACTTCTTTGGAGATGTAAAGAGAGAGTaGGGTGCTGGTCATGCAGTT +
Preference number: 2 (lower is better)
Translates to: GECPQSGWVILPQLNFFGDVKRE*GAGHAV
Trigger: AACTGCATGACCAGCACCTCACTCTCTCTTTACATC...TCCAAAGAAGTTTAACTGAGGAAGGATGACCCACCCTGATTGTGGACACTCACC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR TCA 90 bp GATGGTGAGTGTCCACAATCAGGGTGGGTCATCCTTCCTCAGTTAAACTTCTTTTCAAAGATAACCCTGTaGGCAGGGGACCATTCTCGT +
Preference number: 2 (lower is better)
Translates to: DGECPQSGWVILPQLNFFSKITL*AGDHSR
Trigger: ACGAGAATGGTCCCCTGCTCACAGGGTTATCTTTGA...AAAGAAGTTTAACTGAGGAAGGATGACCCACCCTGATTGTGGACACTCACCATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR CCA 90 bp GTGATTCTGAACCCAGCAAAATCGACAATCAAGATTAACCATCACAATCATAGGTCCAGGCACCAGCCTTaGTCACCACCCACCGAGGAT +
Preference number: 2 (lower is better)
Translates to: VILNPAKSTIKINHHNHRSRHQP*SPPTED
Trigger: ATCCTCGGTGGGTGGTGACCAAGGCTGGTGCCTGGA...CCTATGATTGTGATGGTTAATCTTGATTGTCGATTTTGCTGGGTTCAGAATCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR TCA 90 bp GGTGAGTGTCCACAATCAGGGTGGGTCATCCTTCCTCAGTTAAACTTCTTTGGATGCTGGTCATGCAGTTaGGATGATACTTCAGGAAGA +
Preference number: 2 (lower is better)
Translates to: GECPQSGWVILPQLNFFGCWSCS*DDTSGR
Trigger: TCTTCCTGAAGTATCATCTCAACTGCATGACCAGCA...TCCAAAGAAGTTTAACTGAGGAAGGATGACCCACCCTGATTGTGGACACTCACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR TCA 90 bp GTTGGTAGTTACTCTATGAGCTACCCTTGGCCTGACTTCCTCTGCAGTGCAGATTCACAGAGTTTCCTATaGCAGAGTCATAGGATAGGT +
Preference number: 2 (lower is better)
Translates to: VGSYSMSYPWPDFLCSADSQSFL*QSHRIG
Trigger: ACCTATCCTATGACTCTGTCATAGGAAACTCTGTGA...ATCTGCACTGCAGAGGAAGTCAGGCCAAGGGTAGCTCATAGAGTAACTACCAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR GCA 90 bp GAAGGAAAGAGAGACGGACCAATGGATGTTCAGTTTGCTTTATCTCTTTCCTCCCCTTATGCTTTTCTGTaGTTCTGTTCCAGGCCCTGC +
Preference number: 2 (lower is better)
Translates to: EGKRDGPMDVQFALSLSSPYAFL*FCSRPC
Trigger: GCAGGGCCTGGAACAGAAGCACAGAAAAGCATAAGG...GGAGGAAAGAGATAAAGCAAACTGAACATCCATTGGTCCGTCTCTCTTTCCTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR GCA 90 bp GATGGTGAGTGTCCACAATCAGGGTGGGTCATCCTTCCTCAGTTAAACTTCTTTCCCACTGGTCCCTTATaGTTTTCTGTGCTTCTGTTC +
Preference number: 2 (lower is better)
Translates to: DGECPQSGWVILPQLNFFPTGPL*FSVLLF
Trigger: GAACAGAAGCACAGAAAAGCATAAGGGACCAGTGGG...AAAGAAGTTTAACTGAGGAAGGATGACCCACCCTGATTGTGGACACTCACCATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR GCA 90 bp GAAGGAAAGAGAGACGGACCAATGGATGTTCAGTTTGCTTTATCTCTTTCCTCCTGGCCTGACTTCCTCTaGAGTGCAGATGTATGCAGT +
Preference number: 2 (lower is better)
Translates to: EGKRDGPMDVQFALSLSSWPDFL*SADVCS
Trigger: ACTGCATACATCTGCACTGCAGAGGAAGTCAGGCCA...GGAGGAAAGAGATAAAGCAAACTGAACATCCATTGGTCCGTCTCTCTTTCCTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR CCA 90 bp GGTGAGTGTCCACAATCAGGGTGGGTCATCCTTCCTCAGTTAAACTTCTTTGGAAATGAGAGTCCAGAATaGGAAGGCTCTGCTTATCCA +
Preference number: 2 (lower is better)
Translates to: GECPQSGWVILPQLNFFGNESPE*EGSAYP
Trigger: TGGATAAGCAGAGCCTTCCCATTCTGGACTCTCATT...TCCAAAGAAGTTTAACTGAGGAAGGATGACCCACCCTGATTGTGGACACTCACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR CCA 90 bp GGTGAGTGTCCACAATCAGGGTGGGTCATCCTTCCTCAGTTAAACTTCTTTGGACAGAGGAAGAAAGTGTaGTATATCCACACAGTGGGA +
Preference number: 2 (lower is better)
Translates to: GECPQSGWVILPQLNFFGQRKKV*YIHTVG
Trigger: TCCCACTGTGTGGATATACCACACTTTCTTCCTCTG...TCCAAAGAAGTTTAACTGAGGAAGGATGACCCACCCTGATTGTGGACACTCACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR TCA 90 bp AAAGTGTGGTATATCCACACAGTGGGATGCCTTTCAGCATTTAACATAAAGGAAGATTCTCACCCTGGTTaGCCATGGTGGGTAGATGGG +
Preference number: 2 (lower is better)
Translates to: KVWYIHTVGCLSAFNIKEDSHPG*PWWVDG
Trigger: CCCATCTACCCACCATGGTCAACCAGGGTGAGAATC...TTCCTTTATGTTAAATGCTGAAAGGCATCCCACTGTGTGGATATACCACACTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR TCA 90 bp GAAGGAAAGAGAGACGGACCAATGGATGTTCAGTTTGCTTTATCTCTTTCCTCCCCAGAACATGGAGAATaGACGCTTGCTCTGCTTTCA +
Preference number: 2 (lower is better)
Translates to: EGKRDGPMDVQFALSLSSPEHGE*TLALLS
Trigger: TGAAAGCAGAGCAAGCGTTCATTCTCCATGTTCTGG...GGAGGAAAGAGATAAAGCAAACTGAACATCCATTGGTCCGTCTCTCTTTCCTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR TCA 90 bp GGTGAGTGTCCACAATCAGGGTGGGTCATCCTTCCTCAGTTAAACTTCTTTGGACATAGGCAAGAGAACTaGAGACAGCATCTTAAAGTG +
Preference number: 2 (lower is better)
Translates to: GECPQSGWVILPQLNFFGHRQEN*RQHLKV
Trigger: CACTTTAAGATGCTGTCTTCAGTTCTCTTGCCTATG...TCCAAAGAAGTTTAACTGAGGAAGGATGACCCACCCTGATTGTGGACACTCACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR GCA 90 bp GTTGGTAGTTACTCTATGAGCTACCCTTGGCCTGACTTCCTCTGCAGTGCAGATAATGAACGCTTGCTCTaGTTTCACAGAGTTTCCTAT +
Preference number: 2 (lower is better)
Translates to: VGSYSMSYPWPDFLCSADNERLL*FHRVSY
Trigger: ATAGGAAACTCTGTGAAAGCAGAGCAAGCGTTCATT...ATCTGCACTGCAGAGGAAGTCAGGCCAAGGGTAGCTCATAGAGTAACTACCAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR GCA 90 bp GATTACAATGAGGATTGTCACGTGACCCAGCAATACTCTTGGGTATACATGCTAATCTATTTAAGGCTGTaGAGCCTTCTGCCCCTGACC +
Preference number: 2 (lower is better)
Translates to: DYNEDCHVTQQYSWVYMLIYLRL*SLLPLT
Trigger: GGTCAGGGGCAGAAGGCTGCACAGCCTTAAATAGAT...TAGCATGTATACCCAAGAGTATTGCTGGGTCACGTGACAATCCTCATTGTAATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR GCA 90 bp AAAGTGTGGTATATCCACACAGTGGGATGCCTTTCAGCATTTAACATAAAGGAAAGACATGGCTCTCTCTaGCTCCTGAGCTCTCTGCTG +
Preference number: 2 (lower is better)
Translates to: KVWYIHTVGCLSAFNIKERHGSL*LLSSLL
Trigger: CAGCAGAGAGCTCAGGAGGCAGAGAGAGCCATGTCT...TTCCTTTATGTTAAATGCTGAAAGGCATCCCACTGTGTGGATATACCACACTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR CCA 90 bp GATTACAATGAGGATTGTCACGTGACCCAGCAATACTCTTGGGTATACATGCTAGTGTTGGCTCATGGTTaGAAGGGCTACAGTCCATCA +
Preference number: 2 (lower is better)
Translates to: DYNEDCHVTQQYSWVYMLVLAHG*KGYSPS
Trigger: TGATGGACTGTAGCCCTTCCAACCATGAGCCAACAC...TAGCATGTATACCCAAGAGTATTGCTGGGTCACGTGACAATCCTCATTGTAATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR TCA 90 bp GAAGGAAAGAGAGACGGACCAATGGATGTTCAGTTTGCTTTATCTCTTTCCTCCTGCTGGTCATGCAGTTaGGATGATACTTCAGGAAGA +
Preference number: 2 (lower is better)
Translates to: EGKRDGPMDVQFALSLSSCWSCS*DDTSGR
Trigger: TCTTCCTGAAGTATCATCTCAACTGCATGACCAGCA...GGAGGAAAGAGATAAAGCAAACTGAACATCCATTGGTCCGTCTCTCTTTCCTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR TCA 90 bp GATGGTGAGTGTCCACAATCAGGGTGGGTCATCCTTCCTCAGTTAAACTTCTTTTCACAGAGTTTCCTATaGCAGAGTCATAGGATAGGT +
Preference number: 2 (lower is better)
Translates to: DGECPQSGWVILPQLNFFSQSFL*QSHRIG
Trigger: ACCTATCCTATGACTCTGTCATAGGAAACTCTGTGA...AAAGAAGTTTAACTGAGGAAGGATGACCCACCCTGATTGTGGACACTCACCATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR TCA 90 bp GATGGTGAGTGTCCACAATCAGGGTGGGTCATCCTTCCTCAGTTAAACTTCTTTACTGTTCTGGAGATATaGTGTCTTTGCAATGTGCAC +
Preference number: 2 (lower is better)
Translates to: DGECPQSGWVILPQLNFFTVLEI*CLCNVH
Trigger: GTGCACATTGCAAAGACATCATATCTCCAGAACAGT...AAAGAAGTTTAACTGAGGAAGGATGACCCACCCTGATTGTGGACACTCACCATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR CCA 90 bp GAAGGAAAGAGAGACGGACCAATGGATGTTCAGTTTGCTTTATCTCTTTCCTCCAATGAGAGTCCAGAATaGGAAGGCTCTGCTTATCCA +
Preference number: 2 (lower is better)
Translates to: EGKRDGPMDVQFALSLSSNESPE*EGSAYP
Trigger: TGGATAAGCAGAGCCTTCCCATTCTGGACTCTCATT...GGAGGAAAGAGATAAAGCAAACTGAACATCCATTGGTCCGTCTCTCTTTCCTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR CCA 90 bp GATTACAATGAGGATTGTCACGTGACCCAGCAATACTCTTGGGTATACATGCTAAAGGAAGGTTTGTGTTaGCTCATGGTTGGAAGGGCT +
Preference number: 2 (lower is better)
Translates to: DYNEDCHVTQQYSWVYMLKEGLC*LMVGRA
Trigger: AGCCCTTCCAACCATGAGCCAACACAAACCTTCCTT...TAGCATGTATACCCAAGAGTATTGCTGGGTCACGTGACAATCCTCATTGTAATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR TCA 90 bp GAAGGAAAGAGAGACGGACCAATGGATGTTCAGTTTGCTTTATCTCTTTCCTCCACTGTTCTGGAGATATaGTGTCTTTGCAATGTGCAC +
Preference number: 2 (lower is better)
Translates to: EGKRDGPMDVQFALSLSSTVLEI*CLCNVH
Trigger: GTGCACATTGCAAAGACATCATATCTCCAGAACAGT...GGAGGAAAGAGATAAAGCAAACTGAACATCCATTGGTCCGTCTCTCTTTCCTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR TCA 90 bp GATTACAATGAGGATTGTCACGTGACCCAGCAATACTCTTGGGTATACATGCTACAGACAAAACACCTGTaGGTAAATGAGCAGAGGAAG +
Preference number: 2 (lower is better)
Translates to: DYNEDCHVTQQYSWVYMLQTKHL*VNEQRK
Trigger: CTTCCTCTGCTCATTTACTCACAGGTGTTTTGTCTG...TAGCATGTATACCCAAGAGTATTGCTGGGTCACGTGACAATCCTCATTGTAATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR TCA 90 bp GAAGGAAAGAGAGACGGACCAATGGATGTTCAGTTTGCTTTATCTCTTTCCTCCCATAGGCAAGAGAACTaGAGACAGCATCTTAAAGTG +
Preference number: 2 (lower is better)
Translates to: EGKRDGPMDVQFALSLSSHRQEN*RQHLKV
Trigger: CACTTTAAGATGCTGTCTTCAGTTCTCTTGCCTATG...GGAGGAAAGAGATAAAGCAAACTGAACATCCATTGGTCCGTCTCTCTTTCCTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR CCA 90 bp AAAGTGTGGTATATCCACACAGTGGGATGCCTTTCAGCATTTAACATAAAGGAATCTATGAGCTACCCTTaGCCTGACTTCCTCTGCAGT +
Preference number: 2 (lower is better)
Translates to: KVWYIHTVGCLSAFNIKESMSYP*PDFLCS
Trigger: ACTGCAGAGGAAGTCAGGCCAAGGGTAGCTCATAGA...TTCCTTTATGTTAAATGCTGAAAGGCATCCCACTGTGTGGATATACCACACTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR TCA 90 bp GTGATTCTGAACCCAGCAAAATCGACAATCAAGATTAACCATCACAATCATAGGCCAGAACATGGAGAATaGACGCTTGCTCTGCTTTCA +
Preference number: 2 (lower is better)
Translates to: VILNPAKSTIKINHHNHRPEHGE*TLALLS
Trigger: TGAAAGCAGAGCAAGCGTTCATTCTCCATGTTCTGG...CCTATGATTGTGATGGTTAATCTTGATTGTCGATTTTGCTGGGTTCAGAATCAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR TCA 90 bp GTGATTCTGAACCCAGCAAAATCGACAATCAAGATTAACCATCACAATCATAGGCAGACAAAACACCTGTaGGTAAATGAGCAGAGGAAG +
Preference number: 2 (lower is better)
Translates to: VILNPAKSTIKINHHNHRQTKHL*VNEQRK
Trigger: CTTCCTCTGCTCATTTACTCACAGGTGTTTTGTCTG...CCTATGATTGTGATGGTTAATCTTGATTGTCGATTTTGCTGGGTTCAGAATCAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR GCA 90 bp GATTACAATGAGGATTGTCACGTGACCCAGCAATACTCTTGGGTATACATGCTAAATGGATGTTCAGTTTaGTTTATCTCTTTCCTCCCT +
Preference number: 2 (lower is better)
Translates to: DYNEDCHVTQQYSWVYMLNGCSV*FISFLP
Trigger: AGGGAGGAAAGAGATAAAGCAAACTGAACATCCATT...TAGCATGTATACCCAAGAGTATTGCTGGGTCACGTGACAATCCTCATTGTAATC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR CCA 90 bp GATTACAATGAGGATTGTCACGTGACCCAGCAATACTCTTGGGTATACATGCTATCAGTTAAACTTCTTTaGAAGCACCATCATAGAGAG +
Preference number: 2 (lower is better)
Translates to: DYNEDCHVTQQYSWVYMLSVKLL*KHHHRE
Trigger: CTCTCTATGATGGTGCTTCCAAAGAAGTTTAACTGA...TAGCATGTATACCCAAGAGTATTGCTGGGTCACGTGACAATCCTCATTGTAATC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR TCA 90 bp GTGATTCTGAACCCAGCAAAATCGACAATCAAGATTAACCATCACAATCATAGGGACAGCATCTTAAAGTaGAACCTTCACCTATACACT +
Preference number: 2 (lower is better)
Translates to: VILNPAKSTIKINHHNHRDSILK*NLHLYT
Trigger: AGTGTATAGGTGAAGGTTTCACTTTAAGATGCTGTC...CCTATGATTGTGATGGTTAATCTTGATTGTCGATTTTGCTGGGTTCAGAATCAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR CCA 90 bp GTGATTCTGAACCCAGCAAAATCGACAATCAAGATTAACCATCACAATCATAGGAAGATGAGACTGTTCTaGAGATATGATGTCTTTGCA +
Preference number: 2 (lower is better)
Translates to: VILNPAKSTIKINHHNHRKMRLF*RYDVFA
Trigger: TGCAAAGACATCATATCTCCAGAACAGTCTCATCTT...CCTATGATTGTGATGGTTAATCTTGATTGTCGATTTTGCTGGGTTCAGAATCAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR GCA 72 bp GTCGGGCAGGCGTTAGTCTTCTCCTTTCCTCAGAAGTaGACGCTAGGGGCGGGCTCAGTGTCCAGAACATGG +
Preference number: 3 (lower is better)
Translates to: VGQALVFSFPQK*TLGAGSVSRTW
Trigger: CCATGTTCTGGACACTGAGCCCGCCCCTAGCGTGCACTTCTGAGGAAAGGAGAAGACTAACGCCTGCCCGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR GCA 72 bp TACCCTTGGCCTGACTTCCTCTGCAGTGCAGATGTATaGAGTATGGGCCAAGGGGAGTCCAGGTGGGAAGAC +
Preference number: 3 (lower is better)
Translates to: YPWPDFLCSADV*SMGQGESRWED
Trigger: GTCTTCCCACCTGGACTCCCCTTGGCCCATACTGCATACATCTGCACTGCAGAGGAAGTCAGGCCAAGGGTA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR CCA 72 bp TTCCAGCAGGGCACGCACAGCTGTCTTTCTGCAGCTTaGGCTGTGTTCCATCGATTCTCACCCTGGTTGACC +
Preference number: 3 (lower is better)
Translates to: FQQGTHSCLSAA*AVFHRFSPWLT
Trigger: GGTCAACCAGGGTGAGAATCGATGGAACACAGCCCAAGCTGCAGAAAGACAGCTGTGCGTGCCCTGCTGGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR TCA 72 bp CAGCTTGGGCTGTGTTCCATCGATTCTCACCCTGGTTaGCCATGGTGGGTAGATGGGGTAGGGCTGATGAAG +
Preference number: 3 (lower is better)
Translates to: QLGLCSIDSHPG*PWWVDGVGLMK
Trigger: CTTCATCAGCCCTACCCCATCTACCCACCATGGTCAACCAGGGTGAGAATCGATGGAACACAGCCCAAGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR CCA 72 bp TCTGCAGCTTGGGCTGTGTTCCATCGATTCTCACCCTaGTTGACCATGGTGGGTAGATGGGGTAGGGCTGAT +
Preference number: 3 (lower is better)
Translates to: SAAWAVFHRFSP*LTMVGRWGRAD
Trigger: ATCAGCCCTACCCCATCTACCCACCATGGTCAACCAGGGTGAGAATCGATGGAACACAGCCCAAGCTGCAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR TCA 72 bp CTACCTTCCTGGCTGGTGCTGTTGGTAGTTACTCTATaGGCTACCCTTGGCCTGACTTCCTCTGCAGTGCAG +
Preference number: 3 (lower is better)
Translates to: LPSWLVLLVVTL*ATLGLTSSAVQ
Trigger: CTGCACTGCAGAGGAAGTCAGGCCAAGGGTAGCTCATAGAGTAACTACCAACAGCACCAGCCAGGAAGGTAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR GCA 72 bp GTCCCTTATGCTTTTCTGTGCTTCTGTTCCAGGCCCTaGATAAGCTTTTCCAGCAGGGCACGCACAGCTGTC +
Preference number: 3 (lower is better)
Translates to: VPYAFLCFCSRP*ISFSSRARTAV
Trigger: GACAGCTGTGCGTGCCCTGCTGGAAAAGCTTATGCAGGGCCTGGAACAGAAGCACAGAAAAGCATAAGGGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR CAA 90 bp GGTCTAGACACCCCACTGGTCCCTTATGCTTTTCTGTGCTTCTGTTCCAGGCCCCTGTCTTTCTGCAGCTaGGGCTGTGTTCCATCGATT +
Preference number: 3 (lower is better)
Translates to: GLDTPLVPYAFLCFCSRPLSFCS*GCVPSI
Trigger: AATCGATGGAACACAGCCCAAGCTGCAGAAAGACAG...GGGCCTGGAACAGAAGCACAGAAAAGCATAAGGGACCAGTGGGGTGTCTAGACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR CAA 90 bp AGTGCAGATGTATGCAGTATGGGCCAAGGGGAGTCCAGGTGGGAAGACATGGCTCTGTCTTTCTGCAGCTaGGGCTGTGTTCCATCGATT +
Preference number: 3 (lower is better)
Translates to: SADVCSMGQGESRWEDMALSFCS*GCVPSI
Trigger: AATCGATGGAACACAGCCCAAGCTGCAGAAAGACAG...AGCCATGTCTTCCCACCTGGACTCCCCTTGGCCCATACTGCATACATCTGCACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR CAA 90 bp GGCGTTAGTCTTCTCCTTTCCTCAGAAGTGCACGCTAGGGGCGGGCTCAGTGTCATGGAGAATGAACGCTaGCTCTGCTTTCACAGAGTT +
Preference number: 3 (lower is better)
Translates to: GVSLLLSSEVHARGGLSVMENER*LCFHRV
Trigger: AACTCTGTGAAAGCAGAGCAAGCGTTCATTCTCCAT...GACACTGAGCCCGCCCCTAGCGTGCACTTCTGAGGAAAGGAGAAGACTAACGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR CAA 90 bp TGGGCCTGTCGGGCAGGCGTTAGTCTTCTCCTTTCCTCAGAAGTGCACGCTAGGATGGAGAATGAACGCTaGCTCTGCTTTCACAGAGTT +
Preference number: 3 (lower is better)
Translates to: WACRAGVSLLLSSEVHARMENER*LCFHRV
Trigger: AACTCTGTGAAAGCAGAGCAAGCGTTCATTCTCCAT...CCTAGCGTGCACTTCTGAGGAAAGGAGAAGACTAACGCCTGCCCGACAGGCCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR GCA 72 bp AGTTACTCTATGAGCTACCCTTGGCCTGACTTCCTCTaGAGTGCAGATGTATGCAGTATGGGCCAAGGGGAG +
Preference number: 3 (lower is better)
Translates to: SYSMSYPWPDFL*SADVCSMGQGE
Trigger: CTCCCCTTGGCCCATACTGCATACATCTGCACTGCAGAGGAAGTCAGGCCAAGGGTAGCTCATAGAGTAACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR CCA 72 bp AAGTGCACGCTAGGGGCGGGCTCAGTGTCCAGAACATaGAGAATGAACGCTTGCTCTGCTTTCACAGAGTTT +
Preference number: 3 (lower is better)
Translates to: KCTLGAGSVSRT*RMNACSAFTEF
Trigger: AAACTCTGTGAAAGCAGAGCAAGCGTTCATTCTCCATGTTCTGGACACTGAGCCCGCCCCTAGCGTGCACTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR CCA 72 bp AGTCATGGATCCTCAAGTTCTCTGCAATCTAGATCCTaGGCCTGTCGGGCAGGCGTTAGTCTTCTCCTTTCC +
Preference number: 3 (lower is better)
Translates to: SHGSSSSLQSRS*ACRAGVSLLLS
Trigger: GGAAAGGAGAAGACTAACGCCTGCCCGACAGGCCCAGGATCTAGATTGCAGAGAACTTGAGGATCCATGACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR CCA 72 bp AGACTGAAGGGAGGAAGGAAGGTTTGTGTTGGCTCATaGTTGGAAGGGCTACAGTCCATCACGTTGTGGACC +
Preference number: 3 (lower is better)
Translates to: RLKGGRKVCVGS*LEGLQSITLWT
Trigger: GGTCCACAACGTGATGGACTGTAGCCCTTCCAACCATGAGCCAACACAAACCTTCCTTCCTCCCTTCAGTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR CAA 90 bp GCTGTGCAACGGAAGCACCTCGCAAAAGGCAGAGTTCATGTTAAGTTTCTTCCCCTGTCTTTCTGCAGCTaGGGCTGTGTTCCATCGATT +
Preference number: 3 (lower is better)
Translates to: AVQRKHLAKGRVHVKFLPLSFCS*GCVPSI
Trigger: AATCGATGGAACACAGCCCAAGCTGCAGAAAGACAG...GGGAAGAAACTTAACATGAACTCTGCCTTTTGCGAGGTGCTTCCGTTGCACAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR TCA 72 bp AGGACATTTCTTCCCTGGTCCTGGTCTCCTCTGAAATaGGAGTCCAGAATGGGAAGGCTCTGCTTATCCATC +
Preference number: 3 (lower is better)
Translates to: RTFLPWSWSPLK*ESRMGRLCLSI
Trigger: GATGGATAAGCAGAGCCTTCCCATTCTGGACTCTCATTTCAGAGGAGACCAGGACCAGGGAAGAAATGTCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR TCA 72 bp CTAAGGCAAAGCAACCCCAGAACGATAGACACCTCTTaGTTCCACTCGGGTGCATTAGCAAAACTCCCAAGG +
Preference number: 3 (lower is better)
Translates to: LRQSNPRTIDTS*FHSGALAKLPR
Trigger: CCTTGGGAGTTTTGCTAATGCACCCGAGTGGAATCAAGAGGTGTCTATCGTTCTGGGGTTGCTTTGCCTTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR CCA 72 bp CCCAGGTTATGGGATGGTGAGTGTCCACAATCAGGGTaGGTCATCCTTCCTCAGTTAAACTTCTTTGGAAGC +
Preference number: 3 (lower is better)
Translates to: PRLWDGECPQSG*VILPQLNFFGS
Trigger: GCTTCCAAAGAAGTTTAACTGAGGAAGGATGACCCACCCTGATTGTGGACACTCACCATCCCATAACCTGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR TCA 72 bp CTTTTATTCAGTCTGAGATCCCAGGTTATGGGATGGTaGGTGTCCACAATCAGGGTGGGTCATCCTTCCTCA +
Preference number: 3 (lower is better)
Translates to: LLFSLRSQVMGW*VSTIRVGHPSS
Trigger: TGAGGAAGGATGACCCACCCTGATTGTGGACACTCACCATCCCATAACCTGGGATCTCAGACTGAATAAAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR GCA 72 bp AGATATGATGTCTTTGCAATGTGCACATCAGCTCTGTaGTGTGCAACGGAAGCACCTCGCAAAAGGCAGAGT +
Preference number: 3 (lower is better)
Translates to: RYDVFAMCTSAL*CATEAPRKRQS
Trigger: ACTCTGCCTTTTGCGAGGTGCTTCCGTTGCACAGCACAGAGCTGATGTGCACATTGCAAAGACATCATATCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR-3UTR CAA 90 bp GATTACAATGAGGATTGTCACGTGACCCAGCAATACTCTTGGGTATACATGCTAGGGAGGAAGGAAGGTTaGTGTTGGCTCATGGTTGGA +
Preference number: 3 (lower is better)
Translates to: DYNEDCHVTQQYSWVYMLGRKEG*CWLMVG
Trigger: TCCAACCATGAGCCAACACAAACCTTCCTTCCTCCC...TAGCATGTATACCCAAGAGTATTGCTGGGTCACGTGACAATCCTCATTGTAATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR GCA 72 bp ATGAGACTGTTCTGGAGATATGATGTCTTTGCAATGTaGACATCAGCTCTGTGCTGTGCAACGGAAGCACCT +
Preference number: 3 (lower is better)
Translates to: MRLFWRYDVFAM*TSALCCATEAP
Trigger: AGGTGCTTCCGTTGCACAGCACAGAGCTGATGTGCACATTGCAAAGACATCATATCTCCAGAACAGTCTCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR GCA 72 bp CTCAGTGTCCAGAACATGGAGAATGAACGCTTGCTCTaGTTTCACAGAGTTTCCTATGACAGAGTCATAGGA +
Preference number: 3 (lower is better)
Translates to: LSVQNMENERLL*FHRVSYDRVIG
Trigger: TCCTATGACTCTGTCATAGGAAACTCTGTGAAAGCAGAGCAAGCGTTCATTCTCCATGTTCTGGACACTGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR CCA 72 bp GGCTTAGAGTCTGAGTCTTGCAAGATGAGACTGTTCTaGAGATATGATGTCTTTGCAATGTGCACATCAGCT +
Preference number: 3 (lower is better)
Translates to: GLESESCKMRLF*RYDVFAMCTSA
Trigger: AGCTGATGTGCACATTGCAAAGACATCATATCTCCAGAACAGTCTCATCTTGCAAGACTCAGACTCTAAGCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR TCA 72 bp CAAAGGCCAAGAACAGACAAAACACCTGTGAGTAAATaGGCAGAGGAAGAAAGTGTGGTATATCCACACAGT +
Preference number: 3 (lower is better)
Translates to: QRPRTDKTPVSK*AEEESVVYPHS
Trigger: ACTGTGTGGATATACCACACTTTCTTCCTCTGCTCATTTACTCACAGGTGTTTTGTCTGTTCTTGGCCTTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR CCA 72 bp CACTTTGTTCTTAGGAAGGAAAGAGAGACGGACCAATaGATGTTCAGTTTGCTTTATCTCTTTCCTCCCTTT +
Preference number: 3 (lower is better)
Translates to: HFVLRKERETDQ*MFSLLYLFPPF
Trigger: AAAGGGAGGAAAGAGATAAAGCAAACTGAACATCCATTGGTCCGTCTCTCTTTCCTTCCTAAGAACAAAGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR TCA 72 bp ATCATAGGCAAGAGAACTGAAGACAGCATCTTAAAGTaGAACCTTCACCTATACACTCATGCTCTCTGTAAC +
Preference number: 3 (lower is better)
Translates to: IIGKRTEDSILK*NLHLYTHALCN
Trigger: GTTACAGAGAGCATGAGTGTATAGGTGAAGGTTTCACTTTAAGATGCTGTCTTCAGTTCTCTTGCCTATGAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR GCA 72 bp CAGAGGAAGAAAGTGTGGTATATCCACACAGTGGGATaGCTTTCAGCATTTAACATAAAGGAATTCTGTCAT +
Preference number: 3 (lower is better)
Translates to: QRKKVWYIHTVG*LSAFNIKEFCH
Trigger: ATGACAGAATTCCTTTATGTTAAATGCTGAAAGGCATCCCACTGTGTGGATATACCACACTTTCTTCCTCTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR TCA 72 bp ATCAAGATTAACCATCACAATCATAGGCAAGAGAACTaGAGACAGCATCTTAAAGTGAAACCTTCACCTATA +
Preference number: 3 (lower is better)
Translates to: IKINHHNHRQEN*RQHLKVKPSPI
Trigger: TATAGGTGAAGGTTTCACTTTAAGATGCTGTCTTCAGTTCTCTTGCCTATGATTGTGATGGTTAATCTTGAT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR TCA 72 bp ATCGCAAATAAGCAGACAGAAAACAGTAAATGTAGATaGAGTATGTGGAGAACTTGGAATGTTTACATCCTG +
Preference number: 3 (lower is better)
Translates to: IANKQTENSKCR*SMWRTWNVYIL
Trigger: CAGGATGTAAACATTCCAAGTTCTCCACATACTTCATCTACATTTACTGTTTTCTGTCTGCTTATTTGCGAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
CDS-3UTR CCA 90 bp AGCAGGGGACCATTCTCGTGGCCTCTACCTTCCTGGCTGGTGCTGTTGGTAGTTACCAATGCTGGGCCTTaGATGGAGAGGCAGCCTGGA +
Preference number: 4 (lower is better)
Translates to: SRGPFSWPLPSWLVLLVVTNAGP*MERQPG
Trigger: TCCAGGCTGCCTCTCCATCCAAGGCCCAGCATTGGT...AACTACCAACAGCACCAGCCAGGAAGGTAGAGGCCACGAGAATGGTCCCCTGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106581.5
ENSMUST00000239005.2
CDS-3UTR TCA 90 bp AGCAGGGGACCATTCTCGTGGCCTCTACCTTCCTGGCTGGTGCTGTTGGTAGTTGGCAGCCTGGAAAACTaGGAAGAAGCAAAGCTGGGG +
Preference number: 4 (lower is better)
Translates to: SRGPFSWPLPSWLVLLVVGSLEN*EEAKLG
Trigger: CCCCAGCTTTGCTTCTTCTCAGTTTTCCAGGCTGCC...AACTACCAACAGCACCAGCCAGGAAGGTAGAGGCCACGAGAATGGTCCCCTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106581.5
ENSMUST00000239005.2
CDS-3UTR TCA 90 bp AGTGCAGATGTATGCAGTATGGGCCAAGGGGAGTCCAGGTGGGAAGACATGGCTTTTTCTGATTGTCCCTaGTGGACAGCCGGCCGCTCT +
Preference number: 4 (lower is better)
Translates to: SADVCSMGQGESRWEDMAFSDCP*WTAGRS
Trigger: AGAGCGGCCGGCTGTCCATCAGGGACAATCAGAAAA...AGCCATGTCTTCCCACCTGGACTCCCCTTGGCCCATACTGCATACATCTGCACT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106581.5
ENSMUST00000239005.2
CDS-3UTR TCA 90 bp GGCGTTAGTCTTCTCCTTTCCTCAGAAGTGCACGCTAGGGGCGGGCTCAGTGTCGTGGGCCAGGGAAGTTaGTTAGAAGTCGACATGGTA +
Preference number: 4 (lower is better)
Translates to: GVSLLLSSEVHARGGLSVVGQGS*LEVDMV
Trigger: TACCATGTCGACTTCTAATCAACTTCCCTGGCCCAC...GACACTGAGCCCGCCCCTAGCGTGCACTTCTGAGGAAAGGAGAAGACTAACGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
CDS-3UTR GCA 90 bp TTAGTCTTCTCCTTTCCTCAGAAGTGCACGCTAGGGGCGGGCTCAGTGTCCAGAACAGTCACTGACCCCTaGTCTGGACCCCTCACCAAT +
Preference number: 4 (lower is better)
Translates to: LVFSFPQKCTLGAGSVSRTVTDP*SGPLTN
Trigger: ATTGGTGAGGGGTCCAGAGCAGGGGTCAGTGACTGT...TCTGGACACTGAGCCCGCCCCTAGCGTGCACTTCTGAGGAAAGGAGAAGACTAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000106581.5
ENSMUST00000239005.2
3UTR CAA 72 bp GCAGCTTGGGCTGTGTTCCATCGATTCTCACCCTGGTaGACCATGGTGGGTAGATGGGGTAGGGCTGATGAA +
Preference number: 4 (lower is better)
Translates to: AAWAVFHRFSPW*TMVGRWGRADE
Trigger: TTCATCAGCCCTACCCCATCTACCCACCATGGTCAACCAGGGTGAGAATCGATGGAACACAGCCCAAGCTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR CAA 72 bp TTTCCAGCAGGGCACGCACAGCTGTCTTTCTGCAGCTaGGGCTGTGTTCCATCGATTCTCACCCTGGTTGAC +
Preference number: 4 (lower is better)
Translates to: FPAGHAQLSFCS*GCVPSILTLVD
Trigger: GTCAACCAGGGTGAGAATCGATGGAACACAGCCCAAGCTGCAGAAAGACAGCTGTGCGTGCCCTGCTGGAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
CDS-3UTR CCA 90 bp GCTGTGCAACGGAAGCACCTCGCAAAAGGCAGAGTTCATGTTAAGTTTCTTCCCCTGGGGACAGCCACATaGTCCTGCCTTCCCACTTTG +
Preference number: 4 (lower is better)
Translates to: AVQRKHLAKGRVHVKFLPLGTAT*SCLPTL
Trigger: CAAAGTGGGAAGGCAGGACCATGTGGCTGTCCCCAG...GGGAAGAAACTTAACATGAACTCTGCCTTTTGCGAGGTGCTTCCGTTGCACAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000106581.5
CDS-3UTR TCA 90 bp GAAGGGAGGCATTGCTCAGTAGGCTTAGAGTCTGAGTCTTGCAAGATGAGACTGGGCAGCCTGGAAAACTaGGAAGAAGCAAAGCTGGGG +
Preference number: 4 (lower is better)
Translates to: EGRHCSVGLESESCKMRLGSLEN*EEAKLG
Trigger: CCCCAGCTTTGCTTCTTCTCAGTTTTCCAGGCTGCC...CAGTCTCATCTTGCAAGACTCAGACTCTAAGCCTACTGAGCAATGCCTCCCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106581.5
ENSMUST00000239005.2
CDS-3UTR TCA 90 bp GGTCTAGACACCCCACTGGTCCCTTATGCTTTTCTGTGCTTCTGTTCCAGGCCCGTTGGTTTGCCATCTTaGGCTATAGCGACATTGCAC +
Preference number: 4 (lower is better)
Translates to: GLDTPLVPYAFLCFCSRPVGLPS*AIATLH
Trigger: GTGCAATGTCGCTATAGCTCAAGATGGCAAACCAAC...GGGCCTGGAACAGAAGCACAGAAAAGCATAAGGGACCAGTGGGGTGTCTAGACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106581.5
ENSMUST00000239005.2
CDS-3UTR TCA 90 bp GAAGGGAGGCATTGCTCAGTAGGCTTAGAGTCTGAGTCTTGCAAGATGAGACTGTTTTCTGATTGTCCCTaGTGGACAGCCGGCCGCTCT +
Preference number: 4 (lower is better)
Translates to: EGRHCSVGLESESCKMRLFSDCP*WTAGRS
Trigger: AGAGCGGCCGGCTGTCCATCAGGGACAATCAGAAAA...CAGTCTCATCTTGCAAGACTCAGACTCTAAGCCTACTGAGCAATGCCTCCCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106581.5
ENSMUST00000239005.2
CDS-3UTR CCA 90 bp GTTGGTAGTTACTCTATGAGCTACCCTTGGCCTGACTTCCTCTGCAGTGCAGATGGATACCCAAAGCCCTaGAGATCTCAGCTGACTCGT +
Preference number: 4 (lower is better)
Translates to: VGSYSMSYPWPDFLCSADGYPKP*RSQLTR
Trigger: ACGAGTCAGCTGAGATCTCCAGGGCTTTGGGTATCC...ATCTGCACTGCAGAGGAAGTCAGGCCAAGGGTAGCTCATAGAGTAACTACCAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106581.5
CDS-3UTR CCA 90 bp GATCCCAGGTTATGGGATGGTGAGTGTCCACAATCAGGGTGGGTCATCCTTCCTGATGGAGAGGCAGCCTaGAAAACTGAGAAGAAGCAA +
Preference number: 4 (lower is better)
Translates to: DPRLWDGECPQSGWVILPDGEAA*KTEKKQ
Trigger: TTGCTTCTTCTCAGTTTTCCAGGCTGCCTCTCCATC...AGGAAGGATGACCCACCCTGATTGTGGACACTCACCATCCCATAACCTGGGATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106581.5
ENSMUST00000239005.2
3UTR CAA 72 bp GGCGGGCTCAGTGTCCAGAACATGGAGAATGAACGCTaGCTCTGCTTTCACAGAGTTTCCTATGACAGAGTC +
Preference number: 4 (lower is better)
Translates to: GGLSVQNMENER*LCFHRVSYDRV
Trigger: GACTCTGTCATAGGAAACTCTGTGAAAGCAGAGCAAGCGTTCATTCTCCATGTTCTGGACACTGAGCCCGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
CDS-3UTR TCA 90 bp GGTGAGTGTCCACAATCAGGGTGGGTCATCCTTCCTCAGTTAAACTTCTTTGGACCTGGAGATCTCAGCTaGCTCGTTCTGTTTGTCCAG +
Preference number: 4 (lower is better)
Translates to: GECPQSGWVILPQLNFFGPGDLS*LVLFVQ
Trigger: CTGGACAAACAGAACGAGTCAGCTGAGATCTCCAGG...TCCAAAGAAGTTTAACTGAGGAAGGATGACCCACCCTGATTGTGGACACTCACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106581.5
CDS-3UTR TCA 90 bp GCTGTGCAACGGAAGCACCTCGCAAAAGGCAGAGTTCATGTTAAGTTTCTTCCCCTTCGTTTCTTTCTCTaGCCCAGTGGATCGGATGAG +
Preference number: 4 (lower is better)
Translates to: AVQRKHLAKGRVHVKFLPLRFFL*PSGSDE
Trigger: CTCATCCGATCCACTGGGTCAGAGAAAGAAACGAAG...GGGAAGAAACTTAACATGAACTCTGCCTTTTGCGAGGTGCTTCCGTTGCACAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106581.5
ENSMUST00000239005.2
3UTR CAA 72 bp GCTAAGGCAAAGCAACCCCAGAACGATAGACACCTCTaGATTCCACTCGGGTGCATTAGCAAAACTCCCAAG +
Preference number: 4 (lower is better)
Translates to: AKAKQPQNDRHL*IPLGCISKTPK
Trigger: CTTGGGAGTTTTGCTAATGCACCCGAGTGGAATCAAGAGGTGTCTATCGTTCTGGGGTTGCTTTGCCTTAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
3UTR CAA 72 bp CACCTGAGAAAAGAGACTGAAGGGAGGAAGGAAGGTTaGTGTTGGCTCATGGTTGGAAGGGCTACAGTCCAT +
Preference number: 4 (lower is better)
Translates to: HLRKETEGRKEG*CWLMVGRATVH
Trigger: ATGGACTGTAGCCCTTCCAACCATGAGCCAACACAAACCTTCCTTCCTCCCTTCAGTCTCTTTTCTCAGGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
CDS-3UTR CCA 90 bp GCTGTGCAACGGAAGCACCTCGCAAAAGGCAGAGTTCATGTTAAGTTTCTTCCCGATGGAGAGGCAGCCTaGAAAACTGAGAAGAAGCAA +
Preference number: 4 (lower is better)
Translates to: AVQRKHLAKGRVHVKFLPDGEAA*KTEKKQ
Trigger: TTGCTTCTTCTCAGTTTTCCAGGCTGCCTCTCCATC...GGGAAGAAACTTAACATGAACTCTGCCTTTTGCGAGGTGCTTCCGTTGCACAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106581.5
ENSMUST00000239005.2
CDS-3UTR TCA 90 bp GATGGTGAGTGTCCACAATCAGGGTGGGTCATCCTTCCTCAGTTAAACTTCTTTCTTCGTTTCTTTCTCTaGCCCAGTGGATCGGATGAG +
Preference number: 4 (lower is better)
Translates to: DGECPQSGWVILPQLNFFLRFFL*PSGSDE
Trigger: CTCATCCGATCCACTGGGTCAGAGAAAGAAACGAAG...AAAGAAGTTTAACTGAGGAAGGATGACCCACCCTGATTGTGGACACTCACCATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106581.5
ENSMUST00000239005.2
CDS-3UTR TCA 90 bp GATGGTGAGTGTCCACAATCAGGGTGGGTCATCCTTCCTCAGTTAAACTTCTTTGTGGGCCAGGGAAGTTaGTTAGAAGTCGACATGGTA +
Preference number: 4 (lower is better)
Translates to: DGECPQSGWVILPQLNFFVGQGS*LEVDMV
Trigger: TACCATGTCGACTTCTAATCAACTTCCCTGGCCCAC...AAAGAAGTTTAACTGAGGAAGGATGACCCACCCTGATTGTGGACACTCACCATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
CDS-3UTR GCA 90 bp AAAGTGTGGTATATCCACACAGTGGGATGCCTTTCAGCATTTAACATAAAGGAAACAGTCACTGACCCCTaGTCTGGACCCCTCACCAAT +
Preference number: 4 (lower is better)
Translates to: KVWYIHTVGCLSAFNIKETVTDP*SGPLTN
Trigger: ATTGGTGAGGGGTCCAGAGCAGGGGTCAGTGACTGT...TTCCTTTATGTTAAATGCTGAAAGGCATCCCACTGTGTGGATATACCACACTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000106581.5
ENSMUST00000239005.2
CDS-3UTR TCA 90 bp GTGATTCTGAACCCAGCAAAATCGACAATCAAGATTAACCATCACAATCATAGGGTTGGTTTGCCATCTTaGGCTATAGCGACATTGCAC +
Preference number: 4 (lower is better)
Translates to: VILNPAKSTIKINHHNHRVGLPS*AIATLH
Trigger: GTGCAATGTCGCTATAGCTCAAGATGGCAAACCAAC...CCTATGATTGTGATGGTTAATCTTGATTGTCGATTTTGCTGGGTTCAGAATCAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106581.5
ENSMUST00000239005.2
3UTR CAA 72 bp GACCCAGCAATACTCTTGGGTATACATGCTAATTACTaGTGTCACTGCTGTGACAAAACACCTGAGAAAAGA +
Preference number: 4 (lower is better)
Translates to: DPAILLGIHANY*CHCCDKTPEKR
Trigger: TCTTTTCTCAGGTGTTTTGTCACAGCAGTGACACAAGTAATTAGCATGTATACCCAAGAGTATTGCTGGGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
CDS TCA 90 bp ACAGCCGGCCGCTCTTCGTTTCTTTCTCTGACCCAGTGGATCGGATaGGGACCCTGCAAGTGCTCCAGCTTGCTCCCCGGCACCACCACT +
Preference number: 5 (lower is better)
Translates to: TAGRSSFLSLTQWIG*GPCKCSSLLPGTTT
Trigger: AGTGGTGGTGCCGGGGAGCAAGCTGGAGCACTTGCAGGGTCCTCATCCGATCCACTGGGTCAGAGAAAGAAACGAAGAGCGGCCGGCTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106581.5
ENSMUST00000239005.2
CDS-3UTR CAA 90 bp TGGGCCTGTCGGGCAGGCGTTAGTCTTCTCCTTTCCTCAGAAGTGCACGCTAGGCAGGGACCTTCTGAGTaGACCTCTTCAGCCAGAGGA +
Preference number: 5 (lower is better)
Translates to: WACRAGVSLLLSSEVHARQGPSE*TSSARG
Trigger: TCCTCTGGCTGAAGAGGTCAACTCAGAAGGTCCCTG...CCTAGCGTGCACTTCTGAGGAAAGGAGAAGACTAACGCCTGCCCGACAGGCCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
CDS-3UTR CAA 90 bp TGGGCCTGTCGGGCAGGCGTTAGTCTTCTCCTTTCCTCAGAAGTGCACGCTAGGACTTTGCTGCACTCCTaGATGAACAGCCAGCAGCAA +
Preference number: 5 (lower is better)
Translates to: WACRAGVSLLLSSEVHARTLLHS*MNSQQQ
Trigger: TTGCTGCTGGCTGTTCATCAAGGAGTGCAGCAAAGT...CCTAGCGTGCACTTCTGAGGAAAGGAGAAGACTAACGCCTGCCCGACAGGCCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106581.5
CDS TCA 90 bp GCTACAGAGAGTGTGTCTCCACTGTTCCTCAGGGACCTTCTGAGTTaGCCTCTTCAGCCAGAGGACAGCACCAACCAAGATGAGCAAGGC +
Preference number: 5 (lower is better)
Translates to: ATESVSPLFLRDLLS*PLQPEDSTNQDEQG
Trigger: GCCTTGCTCATCTTGGTTGGTGCTGTCCTCTGGCTGAAGAGGTCAACTCAGAAGGTCCCTGAGGAACAGTGGAGACACACTCTCTGTAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
CDS-3UTR CAA 90 bp TGGGCCTGTCGGGCAGGCGTTAGTCTTCTCCTTTCCTCAGAAGTGCACGCTAGGTTCTGTTTGTCCAGGTaGCCTCTGAGTGTCTTACTC +
Preference number: 5 (lower is better)
Translates to: WACRAGVSLLLSSEVHARFCLSR*PLSVLL
Trigger: GAGTAAGACACTCAGAGGCAACCTGGACAAACAGAA...CCTAGCGTGCACTTCTGAGGAAAGGAGAAGACTAACGCCTGCCCGACAGGCCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106581.5
CDS-3UTR CAA 90 bp GGCGTTAGTCTTCTCCTTTCCTCAGAAGTGCACGCTAGGGGCGGGCTCAGTGTCCACCACCACTTCTTGTaGGTTTGCCATCTTGAGCTA +
Preference number: 5 (lower is better)
Translates to: GVSLLLSSEVHARGGLSVHHHFL*VCHLEL
Trigger: TAGCTCAAGATGGCAAACCAACAAGAAGTGGTGGTG...GACACTGAGCCCGCCCCTAGCGTGCACTTCTGAGGAAAGGAGAAGACTAACGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106581.5
ENSMUST00000239005.2
CDS-3UTR CAA 90 bp GATCCCAGGTTATGGGATGGTGAGTGTCCACAATCAGGGTGGGTCATCCTTCCTCAGGGACCTTCTGAGTaGACCTCTTCAGCCAGAGGA +
Preference number: 5 (lower is better)
Translates to: DPRLWDGECPQSGWVILPQGPSE*TSSARG
Trigger: TCCTCTGGCTGAAGAGGTCAACTCAGAAGGTCCCTG...AGGAAGGATGACCCACCCTGATTGTGGACACTCACCATCCCATAACCTGGGATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
CDS TCA 90 bp CCTTCTGAGTTGACCTCTTCAGCCAGAGGACAGCACCAACCAAGATaGGCAAGGCAGGCACCTTCACAAATACCAGGAGCATGTAATAGG +
Preference number: 5 (lower is better)
Translates to: PSELTSSARGQHQPR*ARQAPSQIPGACNR
Trigger: CCTATTACATGCTCCTGGTATTTGTGAAGGTGCCTGCCTTGCTCATCTTGGTTGGTGCTGTCCTCTGGCTGAAGAGGTCAACTCAGAAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
CDS-3UTR CAA 90 bp GAAGGGAGGCATTGCTCAGTAGGCTTAGAGTCTGAGTCTTGCAAGATGAGACTGAGTGGGCCAGGGAAGTaGATTAGAAGTCGACATGGT +
Preference number: 5 (lower is better)
Translates to: EGRHCSVGLESESCKMRLSGPGK*IRSRHG
Trigger: ACCATGTCGACTTCTAATCAACTTCCCTGGCCCACT...CAGTCTCATCTTGCAAGACTCAGACTCTAAGCCTACTGAGCAATGCCTCCCTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
CDS-3UTR CAA 90 bp GATTACAATGAGGATTGTCACGTGACCCAGCAATACTCTTGGGTATACATGCTATCCTGCCTTCCCACTTaGCTGCACTCCTTGATGAAC +
Preference number: 5 (lower is better)
Translates to: DYNEDCHVTQQYSWVYMLSCLPT*LHSLMN
Trigger: GTTCATCAAGGAGTGCAGCAAAGTGGGAAGGCAGGA...TAGCATGTATACCCAAGAGTATTGCTGGGTCACGTGACAATCCTCATTGTAATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106581.5
CDS-3UTR CAA 90 bp GAAGGAAAGAGAGACGGACCAATGGATGTTCAGTTTGCTTTATCTCTTTCCTCCAGTGGGCCAGGGAAGTaGATTAGAAGTCGACATGGT +
Preference number: 5 (lower is better)
Translates to: EGKRDGPMDVQFALSLSSSGPGK*IRSRHG
Trigger: ACCATGTCGACTTCTAATCAACTTCCCTGGCCCACT...GGAGGAAAGAGATAAAGCAAACTGAACATCCATTGGTCCGTCTCTCTTTCCTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
CDS-3UTR CAA 90 bp GATTACAATGAGGATTGTCACGTGACCCAGCAATACTCTTGGGTATACATGCTAAGTGGGCCAGGGAAGTaGATTAGAAGTCGACATGGT +
Preference number: 5 (lower is better)
Translates to: DYNEDCHVTQQYSWVYMLSGPGK*IRSRHG
Trigger: ACCATGTCGACTTCTAATCAACTTCCCTGGCCCACT...TAGCATGTATACCCAAGAGTATTGCTGGGTCACGTGACAATCCTCATTGTAATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
CDS-3UTR CAA 90 bp AAAGTGTGGTATATCCACACAGTGGGATGCCTTTCAGCATTTAACATAAAGGAACAGGGACCTTCTGAGTaGACCTCTTCAGCCAGAGGA +
Preference number: 5 (lower is better)
Translates to: KVWYIHTVGCLSAFNIKEQGPSE*TSSARG
Trigger: TCCTCTGGCTGAAGAGGTCAACTCAGAAGGTCCCTG...TTCCTTTATGTTAAATGCTGAAAGGCATCCCACTGTGTGGATATACCACACTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
CDS-3UTR CAA 90 bp AAAGTGTGGTATATCCACACAGTGGGATGCCTTTCAGCATTTAACATAAAGGAACACCACCACTTCTTGTaGGTTTGCCATCTTGAGCTA +
Preference number: 5 (lower is better)
Translates to: KVWYIHTVGCLSAFNIKEHHHFL*VCHLEL
Trigger: TAGCTCAAGATGGCAAACCAACAAGAAGTGGTGGTG...TTCCTTTATGTTAAATGCTGAAAGGCATCCCACTGTGTGGATATACCACACTTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106581.5
ENSMUST00000239005.2
CDS GCA 72 bp AGTGGATCGGATGAGGACCCTGCAAGTGCTCCAGCTTaGTCCCCGGCACCACCACTTCTTGTTGGTTTGCCA +
Preference number: 6 (lower is better)
Translates to: SGSDEDPASAPA*SPAPPLLVGLP
Trigger: TGGCAAACCAACAAGAAGTGGTGGTGCCGGGGAGCAAGCTGGAGCACTTGCAGGGTCCTCATCCGATCCACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106581.5
ENSMUST00000239005.2
CDS CAA 90 bp CTGGGGACAGCCACATGGTCCTGCCTTCCCACTTTGCTGCACTCCTaGATGAACAGCCAGCAGCAAATCCAAATCTCAGCGGGATACCCA +
Preference number: 6 (lower is better)
Translates to: LGTATWSCLPTLLHS*MNSQQQIQISAGYP
Trigger: TGGGTATCCCGCTGAGATTTGGATTTGCTGCTGGCTGTTCATCAAGGAGTGCAGCAAAGTGGGAAGGCAGGACCATGTGGCTGTCCCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106581.5
CDS TCA 72 bp CAGAGAGTGTGTCTCCACTGTTCCTCAGGGACCTTCTaGGTTGACCTCTTCAGCCAGAGGACAGCACCAACC +
Preference number: 6 (lower is better)
Translates to: QRVCLHCSSGTF*VDLFSQRTAPT
Trigger: GGTTGGTGCTGTCCTCTGGCTGAAGAGGTCAACTCAGAAGGTCCCTGAGGAACAGTGGAGACACACTCTCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
CDS TCA 72 bp TCTCAGCGGGATACCCAAAGCCCTGGAGATCTCAGCTaGCTCGTTCTGTTTGTCCAGGTTGCCTCTGAGTGT +
Preference number: 6 (lower is better)
Translates to: SQRDTQSPGDLS*LVLFVQVASEC
Trigger: ACACTCAGAGGCAACCTGGACAAACAGAACGAGTCAGCTGAGATCTCCAGGGCTTTGGGTATCCCGCTGAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106581.5
CDS CCA 72 bp TGCTCCAGCTTGCTCCCCGGCACCACCACTTCTTGTTaGTTTGCCATCTTGAGCTATAGCGACATTGCACAG +
Preference number: 6 (lower is better)
Translates to: CSSLLPGTTTSC*FAILSYSDIAQ
Trigger: CTGTGCAATGTCGCTATAGCTCAAGATGGCAAACCAACAAGAAGTGGTGGTGCCGGGGAGCAAGCTGGAGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106581.5
ENSMUST00000239005.2
CDS CAA 72 bp GCCACATGGTCCTGCCTTCCCACTTTGCTGCACTCCTaGATGAACAGCCAGCAGCAAATCCAAATCTCAGCG +
Preference number: 6 (lower is better)
Translates to: ATWSCLPTLLHS*MNSQQQIQISA
Trigger: CGCTGAGATTTGGATTTGCTGCTGGCTGTTCATCAAGGAGTGCAGCAAAGTGGGAAGGCAGGACCATGTGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106581.5
CDS TCA 72 bp TTGACCTCTTCAGCCAGAGGACAGCACCAACCAAGATaGGCAAGGCAGGCACCTTCACAAATACCAGGAGCA +
Preference number: 6 (lower is better)
Translates to: LTSSARGQHQPR*ARQAPSQIPGA
Trigger: TGCTCCTGGTATTTGTGAAGGTGCCTGCCTTGCTCATCTTGGTTGGTGCTGTCCTCTGGCTGAAGAGGTCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
CDS TCA 72 bp AGTGTGTCTCCACTGTTCCTCAGGGACCTTCTGAGTTaGCCTCTTCAGCCAGAGGACAGCACCAACCAAGAT +
Preference number: 6 (lower is better)
Translates to: SVSPLFLRDLLS*PLQPEDSTNQD
Trigger: ATCTTGGTTGGTGCTGTCCTCTGGCTGAAGAGGTCAACTCAGAAGGTCCCTGAGGAACAGTGGAGACACACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106581.5
ENSMUST00000149663.4
ENSMUST00000239005.2
CDS CCA 72 bp CAGCAAATCCAAATCTCAGCGGGATACCCAAAGCCCTaGAGATCTCAGCTGACTCGTTCTGTTTGTCCAGGT +
Preference number: 6 (lower is better)
Translates to: QQIQISAGYPKP*RSQLTRSVCPG
Trigger: ACCTGGACAAACAGAACGAGTCAGCTGAGATCTCCAGGGCTTTGGGTATCCCGCTGAGATTTGGATTTGCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106581.5