RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CD300E (Mus musculus)

Ensembl gene IDs: ENSMUSG00000048498

Ensembl transcript IDs: ENSMUST00000062787.8

Found 46 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CCCCTCCCCACCTTTGAGACACAGAACAATGAAGTCCAGTCTGCATaGAGGGCTGAGTTCCTCCCAGGGCATTCCTGGGATGCTTCACTT +
Preference number: 1 (lower is better)
Translates to: PLPTFETQNNEVQSA*RAEFLPGHSWDASL
Trigger: AAGTGAAGCATCCCAGGAATGCCCTGGGAGGAACTCAGCCCTGCATGCAGACTGGACTTCATTGTTCTGTGTCTCAAAGGTGGGGAGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062787.8
3UTR CCA 90 bp GAAGTCCAGTCTGCATGCAGGGCTGAGTTCCTCCCAGGGCATTCCTaGGATGCTTCACTTCATAGTTCTTGGATGGGTCACTCTACATTG +
Preference number: 1 (lower is better)
Translates to: EVQSACRAEFLPGHS*DASLHSSWMGHSTL
Trigger: CAATGTAGAGTGACCCATCCAAGAACTATGAAGTGAAGCATCCCAGGAATGCCCTGGGAGGAACTCAGCCCTGCATGCAGACTGGACTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062787.8
3UTR CCA 90 bp AGACCTCTAACAGAGGGCCCCGGGAGAGTCTTGTTCCCGCTTTTGTaGGTGTCTTTGAGACAGAGTCTATTATTTATCCCTGGCTGTCCA +
Preference number: 1 (lower is better)
Translates to: RPLTEGPGRVLFPLL*VSLRQSLLFIPGCP
Trigger: TGGACAGCCAGGGATAAATAATAGACTCTGTCTCAAAGACACCCACAAAAGCGGGAACAAGACTCTCCCGGGGCCCTCTGTTAGAGGTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062787.8
3UTR CCA 90 bp ATTATTTATCCCTGGCTGTCCAGGAACTCAGTATATAGACTAGGCTaGCCTTTAACTCAGAGACTTACTAGGTTCTTCCTCTCCAGTGCT +
Preference number: 1 (lower is better)
Translates to: IIYPWLSRNSVYRLG*PLTQRLTRFFLSSA
Trigger: AGCACTGGAGAGGAAGAACCTAGTAAGTCTCTGAGTTAAAGGCCAGCCTAGTCTATATACTGAGTTCCTGGACAGCCAGGGATAAATAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062787.8
3UTR TCA 90 bp CTGTTCAAGAAACTTCTAGAAGATTCTTATCCTTTGGAGCTGACATaGGAGCAGAATCCAGGAAATTTGGAGAAGGGAAAGGCAGACCTC +
Preference number: 1 (lower is better)
Translates to: LFKKLLEDSYPLELT*EQNPGNLEKGKADL
Trigger: GAGGTCTGCCTTTCCCTTCTCCAAATTTCCTGGATTCTGCTCTCATGTCAGCTCCAAAGGATAAGAATCTTCTAGAAGTTTCTTGAACAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062787.8
3UTR TCA 90 bp GATTGTTGCCATCGGAGACAATGTCCTGGGATGTTTTTATGGCACTaGGAAGATCAAGGAGCTAGACTTCTGTTCAAGAAACTTCTAGAA +
Preference number: 1 (lower is better)
Translates to: DCCHRRQCPGMFLWH*EDQGARLLFKKLLE
Trigger: TTCTAGAAGTTTCTTGAACAGAAGTCTAGCTCCTTGATCTTCTCAGTGCCATAAAAACATCCCAGGACATTGTCTCCGATGGCAACAATC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062787.8
3UTR TCA 90 bp ATTTCCAAGAACATCTGCTTGTGTGGATCCCAGAGGCCTTGTACTTaGCATACCACTGAAATGCTTCTCTTTCTAGAACATTCTCAAAGT +
Preference number: 1 (lower is better)
Translates to: ISKNICLCGSQRPCT*HTTEMLLFLEHSQS
Trigger: ACTTTGAGAATGTTCTAGAAAGAGAAGCATTTCAGTGGTATGTCAAGTACAAGGCCTCTGGGATCCACACAAGCAGATGTTCTTGGAAAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062787.8
3UTR CAA 90 bp ACAGAGGGCCCCGGGAGAGTCTTGTTCCCGCTTTTGTGGGTGTCTTaGAGACAGAGTCTATTATTTATCCCTGGCTGTCCAGGAACTCAG +
Preference number: 2 (lower is better)
Translates to: TEGPGRVLFPLLWVS*RQSLLFIPGCPGTQ
Trigger: CTGAGTTCCTGGACAGCCAGGGATAAATAATAGACTCTGTCTCAAAGACACCCACAAAAGCGGGAACAAGACTCTCCCGGGGCCCTCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062787.8
3UTR CAA 90 bp GGCAGACCTCTAACAGAGGGCCCCGGGAGAGTCTTGTTCCCGCTTTaGTGGGTGTCTTTGAGACAGAGTCTATTATTTATCCCTGGCTGT +
Preference number: 2 (lower is better)
Translates to: GRPLTEGPGRVLFPL*WVSLRQSLLFIPGC
Trigger: ACAGCCAGGGATAAATAATAGACTCTGTCTCAAAGACACCCACAAAAGCGGGAACAAGACTCTCCCGGGGCCCTCTGTTAGAGGTCTGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062787.8
3UTR CAA 90 bp GGAGAAGGGAAAGGCAGACCTCTAACAGAGGGCCCCGGGAGAGTCTaGTTCCCGCTTTTGTGGGTGTCTTTGAGACAGAGTCTATTATTT +
Preference number: 2 (lower is better)
Translates to: GEGKGRPLTEGPGRV*FPLLWVSLRQSLLF
Trigger: AAATAATAGACTCTGTCTCAAAGACACCCACAAAAGCGGGAACAAGACTCTCCCGGGGCCCTCTGTTAGAGGTCTGCCTTTCCCTTCTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062787.8
3UTR-3UTR TCA 90 bp AGGGGGCAACAGCCTGCAAGCCAAGTGTGTGAGGGACATGTTTCTCAGGAAACTCTTATCCTTTGGAGCTaGCATGAGAGCAGAATCCAG +
Preference number: 2 (lower is better)
Translates to: RGQQPASQVCEGHVSQETLILWS*HESRIQ
Trigger: CTGGATTCTGCTCTCATGTCAGCTCCAAAGGATAAG...AGTTTCCTGAGAAACATGTCCCTCACACACTTGGCTTGCAGGCTGTTGCCCCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062787.8
3UTR-3UTR GCA 90 bp GAATGGATGATTTCCAAGAACATCTGCTTGTGTGGATCCCAGAGGCCTTGTACTGAGAACAGCAGTGGCTaGTGTGCTGCTGAAACGGGC +
Preference number: 2 (lower is better)
Translates to: EWMISKNICLCGSQRPCTENSSG*CAAETG
Trigger: GCCCGTTTCAGCAGCACAGCAGCCACTGCTGTTCTC...AGTACAAGGCCTCTGGGATCCACACAAGCAGATGTTCTTGGAAATCATCCATTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062787.8
3UTR-3UTR CCA 90 bp GTGGGCAGTAATGAGGCAGACTGGCATGAAGGAGGACTTGTGATGGTGGAACAACTCCCAGGGCATTCCTaGGATGCTTCACTTCATAGT +
Preference number: 2 (lower is better)
Translates to: VGSNEADWHEGGLVMVEQLPGHS*DASLHS
Trigger: ACTATGAAGTGAAGCATCCCAGGAATGCCCTGGGAG...TTGTTCCACCATCACAAGTCCTCCTTCATGCCAGTCTGCCTCATTACTGCCCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062787.8
3UTR-3UTR GCA 90 bp TGTGTGGATCCCAGAGGCCTTGTACTTGACATACCACTGAAATGCTTCTCTTTCGAAGTCCAGTCTGCATaGAGGGCTGAGTTCCTCCCA +
Preference number: 2 (lower is better)
Translates to: CVDPRGLVLDIPLKCFSFEVQSA*RAEFLP
Trigger: TGGGAGGAACTCAGCCCTGCATGCAGACTGGACTTC...GAAAGAGAAGCATTTCAGTGGTATGTCAAGTACAAGGCCTCTGGGATCCACACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062787.8
3UTR-3UTR CCA 90 bp GGGCAACAGCCTGCAAGCCAAGTGTGTGAGGGACATGTTTCTCAGGAAACTCGTTCTATTATTTATCCCTaGCTGTCCAGGAACTCAGTA +
Preference number: 2 (lower is better)
Translates to: GQQPASQVCEGHVSQETRSIIYP*LSRNSV
Trigger: TACTGAGTTCCTGGACAGCCAGGGATAAATAATAGA...ACGAGTTTCCTGAGAAACATGTCCCTCACACACTTGGCTTGCAGGCTGTTGCCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062787.8
3UTR-3UTR CCA 90 bp GAATGGATGATTTCCAAGAACATCTGCTTGTGTGGATCCCAGAGGCCTTGTACTTTGTTCCCGCTTTTGTaGGTGTCTTTGAGACAGAGT +
Preference number: 2 (lower is better)
Translates to: EWMISKNICLCGSQRPCTLFPLL*VSLRQS
Trigger: ACTCTGTCTCAAAGACACCCACAAAAGCGGGAACAA...AGTACAAGGCCTCTGGGATCCACACAAGCAGATGTTCTTGGAAATCATCCATTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062787.8
3UTR-3UTR CCA 90 bp AGAGGAATGGATGATTTCCAAGAACATCTGCTTGTGTGGATCCCAGAGGCCTTGGTATATAGACTAGGCTaGCCTTTAACTCAGAGACTT +
Preference number: 2 (lower is better)
Translates to: RGMDDFQEHLLVWIPEALVYRLG*PLTQRL
Trigger: AAGTCTCTGAGTTAAAGGCCAGCCTAGTCTATATAC...CAAGGCCTCTGGGATCCACACAAGCAGATGTTCTTGGAAATCATCCATTCCTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062787.8
3UTR CCA 72 bp TCTGCATGCAGGGCTGAGTTCCTCCCAGGGCATTCCTaGGATGCTTCACTTCATAGTTCTTGGATGGGTCAC +
Preference number: 3 (lower is better)
Translates to: SACRAEFLPGHS*DASLHSSWMGH
Trigger: GTGACCCATCCAAGAACTATGAAGTGAAGCATCCCAGGAATGCCCTGGGAGGAACTCAGCCCTGCATGCAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062787.8
3UTR GCA 72 bp GCCCACACCTCTAGACTCCTAGTTGACCTCTCTGTGTaGTTGGGAGAGTTGGCAGTTGAAATGCTCTACCAG +
Preference number: 3 (lower is better)
Translates to: AHTSRLLVDLSV*LGELAVEMLYQ
Trigger: CTGGTAGAGCATTTCAACTGCCAACTCTCCCAAGCACACAGAGAGGTCAACTAGGAGTCTAGAGGTGTGGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062787.8
3UTR-3UTR CAA 90 bp AGAGGAATGGATGATTTCCAAGAACATCTGCTTGTGTGGATCCCAGAGGCCTTGGTGTGCTTGGGAGAGTaGGCAGTTGAAATGCTCTAC +
Preference number: 3 (lower is better)
Translates to: RGMDDFQEHLLVWIPEALVCLGE*AVEMLY
Trigger: GTAGAGCATTTCAACTGCCAACTCTCCCAAGCACAC...CAAGGCCTCTGGGATCCACACAAGCAGATGTTCTTGGAAATCATCCATTCCTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062787.8
3UTR CCA 72 bp CCCTGGCTGTCCAGGAACTCAGTATATAGACTAGGCTaGCCTTTAACTCAGAGACTTACTAGGTTCTTCCTC +
Preference number: 3 (lower is better)
Translates to: PWLSRNSVYRLG*PLTQRLTRFFL
Trigger: GAGGAAGAACCTAGTAAGTCTCTGAGTTAAAGGCCAGCCTAGTCTATATACTGAGTTCCTGGACAGCCAGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062787.8
3UTR-3UTR CAA 90 bp GGGGGCAACAGCCTGCAAGCCAAGTGTGTGAGGGACATGTTTCTCAGGAAACTCCTTTTGTGGGTGTCTTaGAGACAGAGTCTATTATTT +
Preference number: 3 (lower is better)
Translates to: GGNSLQAKCVRDMFLRKLLLWVS*RQSLLF
Trigger: AAATAATAGACTCTGTCTCAAAGACACCCACAAAAG...GAGTTTCCTGAGAAACATGTCCCTCACACACTTGGCTTGCAGGCTGTTGCCCCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000062787.8
3UTR-3UTR CAA 90 bp GAATGGATGATTTCCAAGAACATCTGCTTGTGTGGATCCCAGAGGCCTTGTACTCAGAATCCAGGAAATTaGGAGAAGGGAAAGGCAGAC +
Preference number: 3 (lower is better)
Translates to: EWMISKNICLCGSQRPCTQNPGN*EKGKAD
Trigger: GTCTGCCTTTCCCTTCTCCAAATTTCCTGGATTCTG...AGTACAAGGCCTCTGGGATCCACACAAGCAGATGTTCTTGGAAATCATCCATTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062787.8
3UTR-3UTR CAA 90 bp TGTGTGGATCCCAGAGGCCTTGTACTTGACATACCACTGAAATGCTTCTCTTTCGAACAATCCTCTGTTTaGACTGTGATGGTCGTTACC +
Preference number: 3 (lower is better)
Translates to: CVDPRGLVLDIPLKCFSFEQSSV*TVMVVT
Trigger: GGTAACGACCATCACAGTCAAAACAGAGGATTGTTC...GAAAGAGAAGCATTTCAGTGGTATGTCAAGTACAAGGCCTCTGGGATCCACACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062787.8
3UTR CCA 72 bp GTGGGTGTCTTTGAGACAGAGTCTATTATTTATCCCTaGCTGTCCAGGAACTCAGTATATAGACTAGGCTGG +
Preference number: 3 (lower is better)
Translates to: VGVFETESIIYP*LSRNSVYRLGW
Trigger: CCAGCCTAGTCTATATACTGAGTTCCTGGACAGCCAGGGATAAATAATAGACTCTGTCTCAAAGACACCCAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062787.8
3UTR TCA 72 bp CATCGGAGACAATGTCCTGGGATGTTTTTATGGCACTaGGAAGATCAAGGAGCTAGACTTCTGTTCAAGAAA +
Preference number: 3 (lower is better)
Translates to: HRRQCPGMFLWH*EDQGARLLFKK
Trigger: TTTCTTGAACAGAAGTCTAGCTCCTTGATCTTCTCAGTGCCATAAAAACATCCCAGGACATTGTCTCCGATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062787.8
3UTR TCA 72 bp AACATCTGCTTGTGTGGATCCCAGAGGCCTTGTACTTaGCATACCACTGAAATGCTTCTCTTTCTAGAACAT +
Preference number: 3 (lower is better)
Translates to: NICLCGSQRPCT*HTTEMLLFLEH
Trigger: ATGTTCTAGAAAGAGAAGCATTTCAGTGGTATGTCAAGTACAAGGCCTCTGGGATCCACACAAGCAGATGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062787.8
CDS-3UTR CCA 90 bp GGTTCTTCCTCTCCAGTGCTGGGATTAACTCCCAGTGCCTTTACTCCCAGTCTTACCAGGACCTGGAACTaGATGCTGCTGAGCAGGGAC +
Preference number: 4 (lower is better)
Translates to: GSSSPVLGLTPSAFTPSLTRTWN*MLLSRD
Trigger: GTCCCTGCTCAGCAGCATCCAGTTCCAGGTCCTGGT...AAGACTGGGAGTAAAGGCACTGGGAGTTAATCCCAGCACTGGAGAGGAAGAACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062787.8
3UTR CAA 72 bp AAAGGCAGACCTCTAACAGAGGGCCCCGGGAGAGTCTaGTTCCCGCTTTTGTGGGTGTCTTTGAGACAGAGT +
Preference number: 4 (lower is better)
Translates to: KGRPLTEGPGRV*FPLLWVSLRQS
Trigger: ACTCTGTCTCAAAGACACCCACAAAAGCGGGAACAAGACTCTCCCGGGGCCCTCTGTTAGAGGTCTGCCTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062787.8
CDS-3UTR TCA 90 bp GGGCATTCCTGGGATGCTTCACTTCATAGTTCTTGGATGGGTCACTCTACATTGGGAACTGGATGCTGCTaGGCAGGGACCACAGTTGGA +
Preference number: 4 (lower is better)
Translates to: GHSWDASLHSSWMGHSTLGTGCC*AGTTVG
Trigger: TCCAACTGTGGTCCCTGCTCAGCAGCATCCAGTTCC...CAATGTAGAGTGACCCATCCAAGAACTATGAAGTGAAGCATCCCAGGAATGCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062787.8
CDS-3UTR CCA 90 bp GTGGGCAGTAATGAGGCAGACTGGCATGAAGGAGGACTTGTGATGGTGGAACAAGATAGCAGTTGTGGCTaGGAGTGTAGGAGTTGTGGC +
Preference number: 4 (lower is better)
Translates to: VGSNEADWHEGGLVMVEQDSSCG*ECRSCG
Trigger: GCCACAACTCCTACACTCCCAGCCACAACTGCTATC...TTGTTCCACCATCACAAGTCCTCCTTCATGCCAGTCTGCCTCATTACTGCCCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062787.8
CDS-3UTR CCA 90 bp GGGCATTCCTGGGATGCTTCACTTCATAGTTCTTGGATGGGTCACTCTACATTGAGGAAGACCAGGACCTaGAACTGGATGCTGCTGAGC +
Preference number: 4 (lower is better)
Translates to: GHSWDASLHSSWMGHSTLRKTRT*NWMLLS
Trigger: GCTCAGCAGCATCCAGTTCCAGGTCCTGGTCTTCCT...CAATGTAGAGTGACCCATCCAAGAACTATGAAGTGAAGCATCCCAGGAATGCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062787.8
3UTR CAA 72 bp CCCGGGAGAGTCTTGTTCCCGCTTTTGTGGGTGTCTTaGAGACAGAGTCTATTATTTATCCCTGGCTGTCCA +
Preference number: 4 (lower is better)
Translates to: PGRVLFPLLWVS*RQSLLFIPGCP
Trigger: TGGACAGCCAGGGATAAATAATAGACTCTGTCTCAAAGACACCCACAAAAGCGGGAACAAGACTCTCCCGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062787.8
3UTR CAA 72 bp CTAACAGAGGGCCCCGGGAGAGTCTTGTTCCCGCTTTaGTGGGTGTCTTTGAGACAGAGTCTATTATTTATC +
Preference number: 4 (lower is better)
Translates to: LTEGPGRVLFPL*WVSLRQSLLFI
Trigger: GATAAATAATAGACTCTGTCTCAAAGACACCCACAAAAGCGGGAACAAGACTCTCCCGGGGCCCTCTGTTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062787.8
3UTR CAA 72 bp AGACTCCTAGTTGACCTCTCTGTGTGCTTGGGAGAGTaGGCAGTTGAAATGCTCTACCAGAAGCCAAATCCT +
Preference number: 4 (lower is better)
Translates to: RLLVDLSVCLGE*AVEMLYQKPNP
Trigger: AGGATTTGGCTTCTGGTAGAGCATTTCAACTGCCAACTCTCCCAAGCACACAGAGAGGTCAACTAGGAGTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062787.8
CDS-3UTR GCA 90 bp AGTGCTGGGATTAACTCCCAGTGCCTTTACTCCCAGTCTTGTTCTCTCTGTTATTTACATGTCGTGTCATaGGGTCCTCGGCACCAGTAT +
Preference number: 4 (lower is better)
Translates to: SAGINSQCLYSQSCSLCYLHVVS*GPRHQY
Trigger: ATACTGGTGCCGAGGACCGCATGACACGACATGTAA...ATAACAGAGAGAACAAGACTGGGAGTAAAGGCACTGGGAGTTAATCCCAGCACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062787.8
CDS-3UTR CCA 90 bp GGGCATTCCTGGGATGCTTCACTTCATAGTTCTTGGATGGGTCACTCTACATTGAGAGACAAACAACCTTaGAAGCAGAGAAGGAGCAGA +
Preference number: 4 (lower is better)
Translates to: GHSWDASLHSSWMGHSTLRDKQP*KQRRSR
Trigger: TCTGCTCCTTCTCTGCTTCCAAGGTTGTTTGTCTCT...CAATGTAGAGTGACCCATCCAAGAACTATGAAGTGAAGCATCCCAGGAATGCCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062787.8
CDS-3UTR CCA 90 bp CCAGTGCTGGGATTAACTCCCAGTGCCTTTACTCCCAGTCTTGTTCTCTCTGTTTGTAGGAGTTGTGGCTaGAAAAACATTCACCCTTAC +
Preference number: 4 (lower is better)
Translates to: PVLGLTPSAFTPSLVLSVCRSCG*KNIHPY
Trigger: GTAAGGGTGAATGTTTTTCCAGCCACAACTCCTACA...AACAGAGAGAACAAGACTGGGAGTAAAGGCACTGGGAGTTAATCCCAGCACTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062787.8
CDS-3UTR CAA 90 bp AGGGGGCAACAGCCTGCAAGCCAAGTGTGTGAGGGACATGTTTCTCAGGAAACTCAGAGACAAACAACCTaGGAAGCAGAGAAGGAGCAG +
Preference number: 5 (lower is better)
Translates to: RGQQPASQVCEGHVSQETQRQTT*EAEKEQ
Trigger: CTGCTCCTTCTCTGCTTCCAAGGTTGTTTGTCTCTG...AGTTTCCTGAGAAACATGTCCCTCACACACTTGGCTTGCAGGCTGTTGCCCCCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062787.8
CDS-3UTR CAA 90 bp AGGGGGCAACAGCCTGCAAGCCAAGTGTGTGAGGGACATGTTTCTCAGGAAACTGAGCAGGGACCACAGTaGGAAGATGAACATCACATT +
Preference number: 5 (lower is better)
Translates to: RGQQPASQVCEGHVSQETEQGPQ*EDEHHI
Trigger: AATGTGATGTTCATCTTCCAACTGTGGTCCCTGCTC...AGTTTCCTGAGAAACATGTCCCTCACACACTTGGCTTGCAGGCTGTTGCCCCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062787.8
CDS TCA 90 bp CGTGTCATGCGGTCCTCGGCACCAGTATTTCATATAGCCCTTATATaGTGGACTATATTGACACTGCACACGGAGAGAGCCTCCTACGTA +
Preference number: 5 (lower is better)
Translates to: RVMRSSAPVFHIALI*WTILTLHTERASYV
Trigger: TACGTAGGAGGCTCTCTCCGTGTGCAGTGTCAATATAGTCCATCATATAAGGGCTATATGAAATACTGGTGCCGAGGACCGCATGACACG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062787.8
CDS TCA 90 bp TGTGGCTGGAAAAACATTCACCCTTACACTGACCGATGGATCACGTaGCCACGAATCCCAGATAAAGGAAGTCTGAATCTTGCACCAGTA +
Preference number: 5 (lower is better)
Translates to: CGWKNIHPYTDRWIT*PRIPDKGSLNLAPV
Trigger: TACTGGTGCAAGATTCAGACTTCCTTTATCTGGGATTCGTGGTCACGTGATCCATCGGTCAGTGTAAGGGTGAATGTTTTTCCAGCCACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062787.8
CDS CAA 90 bp GAAGACCAGGACCTGGAACTGGATGCTGCTGAGCAGGGACCACAGTaGGAAGATGAACATCACATTAGTACTAATCCTCAGGTTCTGCCC +
Preference number: 6 (lower is better)
Translates to: EDQDLELDAAEQGPQ*EDEHHISTNPQVLP
Trigger: GGGCAGAACCTGAGGATTAGTACTAATGTGATGTTCATCTTCCAACTGTGGTCCCTGCTCAGCAGCATCCAGTTCCAGGTCCTGGTCTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062787.8
CDS CCA 72 bp GATAGCAGTTGTGGCTGGGAGTGTAGGAGTTGTGGCTaGAAAAACATTCACCCTTACACTGACCGATGGATC +
Preference number: 6 (lower is better)
Translates to: DSSCGWECRSCG*KNIHPYTDRWI
Trigger: GATCCATCGGTCAGTGTAAGGGTGAATGTTTTTCCAGCCACAACTCCTACACTCCCAGCCACAACTGCTATC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062787.8
CDS TCA 72 bp CGGTCCTCGGCACCAGTATTTCATATAGCCCTTATATaGTGGACTATATTGACACTGCACACGGAGAGAGCC +
Preference number: 6 (lower is better)
Translates to: RSSAPVFHIALI*WTILTLHTERA
Trigger: GGCTCTCTCCGTGTGCAGTGTCAATATAGTCCATCATATAAGGGCTATATGAAATACTGGTGCCGAGGACCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062787.8
CDS CAA 72 bp GACCTGGAACTGGATGCTGCTGAGCAGGGACCACAGTaGGAAGATGAACATCACATTAGTACTAATCCTCAG +
Preference number: 6 (lower is better)
Translates to: DLELDAAEQGPQ*EDEHHISTNPQ
Trigger: CTGAGGATTAGTACTAATGTGATGTTCATCTTCCAACTGTGGTCCCTGCTCAGCAGCATCCAGTTCCAGGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062787.8