Pregenerated sensors for CD300C (Mus musculus)
Ensembl gene IDs: ENSMUSG00000058728Ensembl transcript IDs: ENSMUST00000061637.4, ENSMUST00000092466.13
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | ATGCTCAGGAACAGGGGCAACTTCAGAGACACCAGGATCCAGAAGTaGGGGCTGCTCAGAAGAGACCGAAGCTCAGGGCTGGGAGCAGGA | + |
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Preference number: 5 (lower is better) Translates to: MLRNRGNFRDTRIQK*GLLRRDRSSGLGAG Trigger: TCCTGCTCCCAGCCCTGAGCTTCGGTCTCTTCTGAGCAGCCCCCACTTCTGGATCCTGGTGTCTCTGAAGTTGCCCCTGTTCCTGAGCAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000061637.4 ENSMUST00000092466.13 |
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| CDS CCA 90 bp | TCCCCCACAGTGCCTGTGACAGTGCTGGGACCACGCACAGGGAAATaGCCTGAAACCAAGGAGAGTAGCACAGCTGAAGGCAGCCACAAT | + |
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Preference number: 5 (lower is better) Translates to: SPTVPVTVLGPRTGK*PETKESSTAEGSHN Trigger: ATTGTGGCTGCCTTCAGCTGTGCTACTCTCCTTGGTTTCAGGCCATTTCCCTGTGCGTGGTCCCAGCACTGTCACAGGCACTGTGGGGGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061637.4 |
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| CDS GCA 90 bp | GTGCCTGTGACAGTGCTGGGACCACGCACAGGGAAATGGCCTCCATaGATATCTGAAACCAAGGAGAGTAGCACAGCTGAAGGCAGCCAC | + |
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Preference number: 5 (lower is better) Translates to: VPVTVLGPRTGKWPP*ISETKESSTAEGSH Trigger: GTGGCTGCCTTCAGCTGTGCTACTCTCCTTGGTTTCAGATATGCATGGAGGCCATTTCCCTGTGCGTGGTCCCAGCACTGTCACAGGCAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092466.13 |
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| CDS CCA 90 bp | TCCCCCACAGTGCCTGTGACAGTGCTGGGACCACGCACAGGGAAATaGCCTCCATGCATATCTGAAACCAAGGAGAGTAGCACAGCTGAA | + |
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Preference number: 5 (lower is better) Translates to: SPTVPVTVLGPRTGK*PPCISETKESSTAE Trigger: TTCAGCTGTGCTACTCTCCTTGGTTTCAGATATGCATGGAGGCCATTTCCCTGTGCGTGGTCCCAGCACTGTCACAGGCACTGTGGGGGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000092466.13 |
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| CDS CCA 72 bp | GAAGCTCAGGGCTGGGAGCAGGAATTGTGTCGTCTGTaGTCACGTTGGGCTGAGTGTGCACCGCTGAGGATG | + |
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Preference number: 6 (lower is better) Translates to: EAQGWEQELCRL*SRWAECAPLRM Trigger: CATCCTCAGCGGTGCACACTCAGCCCAACGTGACCACAGACGACACAATTCCTGCTCCCAGCCCTGAGCTTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000061637.4 ENSMUST00000092466.13 |
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| CDS CCA 72 bp | AGTGGGGGCTGCTCAGAAGAGACCGAAGCTCAGGGCTaGGAGCAGGAATTGTGTCGTCTGTGGTCACGTTGG | + |
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Preference number: 6 (lower is better) Translates to: SGGCSEETEAQG*EQELCRLWSRW Trigger: CCAACGTGACCACAGACGACACAATTCCTGCTCCCAGCCCTGAGCTTCGGTCTCTTCTGAGCAGCCCCCACT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000061637.4 ENSMUST00000092466.13 |
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| CDS CCA 72 bp | GTGCCTGTGACAGTGCTGGGACCACGCACAGGGAAATaGCCTGAAACCAAGGAGAGTAGCACAGCTGAAGGC | + |
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Preference number: 6 (lower is better) Translates to: VPVTVLGPRTGK*PETKESSTAEG Trigger: GCCTTCAGCTGTGCTACTCTCCTTGGTTTCAGGCCATTTCCCTGTGCGTGGTCCCAGCACTGTCACAGGCAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061637.4 |
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| CDS CAA 72 bp | TCAGAAGAGACCGAAGCTCAGGGCTGGGAGCAGGAATaGTGTCGTCTGTGGTCACGTTGGGCTGAGTGTGCA | + |
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Preference number: 6 (lower is better) Translates to: SEETEAQGWEQE*CRLWSRWAECA Trigger: TGCACACTCAGCCCAACGTGACCACAGACGACACAATTCCTGCTCCCAGCCCTGAGCTTCGGTCTCTTCTGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000061637.4 ENSMUST00000092466.13 |
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| CDS CCA 72 bp | GTGCCTGTGACAGTGCTGGGACCACGCACAGGGAAATaGCCTCCATGCATATCTGAAACCAAGGAGAGTAGC | + |
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Preference number: 6 (lower is better) Translates to: VPVTVLGPRTGK*PPCISETKESS Trigger: GCTACTCTCCTTGGTTTCAGATATGCATGGAGGCCATTTCCCTGTGCGTGGTCCCAGCACTGTCACAGGCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092466.13 |
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| CDS GCA 72 bp | ACAGTGCTGGGACCACGCACAGGGAAATGGCCTCCATaGATATCTGAAACCAAGGAGAGTAGCACAGCTGAA | + |
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Preference number: 6 (lower is better) Translates to: TVLGPRTGKWPP*ISETKESSTAE Trigger: TTCAGCTGTGCTACTCTCCTTGGTTTCAGATATGCATGGAGGCCATTTCCCTGTGCGTGGTCCCAGCACTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092466.13 |
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| CDS TCA 72 bp | TTTCAATTTCTTCTCATACTGACAGGACACACTGAGTaGCTCCCCCACAGTGCCTGTGACAGTGCTGGGACC | + |
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Preference number: 6 (lower is better) Translates to: FQFLLILTGHTE*LPHSACDSAGT Trigger: GGTCCCAGCACTGTCACAGGCACTGTGGGGGAGTCACTCAGTGTGTCCTGTCAGTATGAGAAGAAATTGAAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000061637.4 ENSMUST00000092466.13 |
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| CDS GCA 72 bp | AAAGAATCCTATATCCACCATACACATGTAGGTGCCTaGATCCTCCAGGGTGAGGTTCTCCAAGGTCACTGT | + |
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Preference number: 6 (lower is better) Translates to: KESYIHHTHVGA*ILQGEVLQGHC Trigger: ACAGTGACCTTGGAGAACCTCACCCTGGAGGATGCAGGCACCTACATGTGTATGGTGGATATAGGATTCTTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000061637.4 ENSMUST00000092466.13 |
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| CDS CAA 72 bp | ACTCGGCCATTCCTAGCTTCTTCTGAGGCACTGGTCTaGACAATATCTTTACACAGTACATTAGATTTCCAT | + |
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Preference number: 6 (lower is better) Translates to: TRPFLASSEALV*TISLHSTLDFH Trigger: ATGGAAATCTAATGTACTGTGTAAAGATATTGTCAAGACCAGTGCCTCAGAAGAAGCTAGGAATGGCCGAGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000061637.4 ENSMUST00000092466.13 |
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