Pregenerated sensors for CD28 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026012Ensembl transcript IDs: ENSMUST00000027165.3
Found 67 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GGCAAGAATGACCTCATTCCCTTCCTCAGAGGAAGCTTCCTGGAATaGATCCTTACCACCCTGACAAATACTAACACTACCCTTTTTGTT | + |
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Preference number: 1 (lower is better) Translates to: GKNDLIPFLRGSFLE*ILTTLTNTNTTLFV Trigger: AACAAAAAGGGTAGTGTTAGTATTTGTCAGGGTGGTAAGGATGCATTCCAGGAAGCTTCCTCTGAGGAAGGGAATGAGGTCATTCTTGCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| 3UTR CCA 90 bp | CTAAAGACACATTCCAAAATAATTGTTCATGTCAATGTATCCCCATaGTATGAAGCAGCTGAGCCCACAAAGTTCTGGAGTCCTGAGTCC | + |
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Preference number: 1 (lower is better) Translates to: LKTHSKIIVHVNVSP*YEAAEPTKFWSPES Trigger: GGACTCAGGACTCCAGAACTTTGTGGGCTCAGCTGCTTCATACCATGGGGATACATTGACATGAACAATTATTTTGGAATGTGTCTTTAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| 3UTR TCA 90 bp | TCCCCAGCAGTCACATTACAGAGAATACATTGGGTAAACCCAGACTaGAATCTCCAAGAGATAAAACATTGGCCTACTGATAAACTGCTA | + |
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Preference number: 1 (lower is better) Translates to: SPAVTLQRIHWVNPD*NLQEIKHWPTDKLL Trigger: TAGCAGTTTATCAGTAGGCCAATGTTTTATCTCTTGGAGATTTCAGTCTGGGTTTACCCAATGTATTCTCTGTAATGTGACTGCTGGGGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| 3UTR GCA 90 bp | AATGTATTAAGCTTGAGTTTGGGTCAAGCCACACAGACTTTATCCTaGCATAGAAGCTTCTGTCATTCATTCCAGAGTCTCAAGATGATC | + |
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Preference number: 1 (lower is better) Translates to: NVLSLSLGQATQTLS*HRSFCHSFQSLKMI Trigger: GATCATCTTGAGACTCTGGAATGAATGACAGAAGCTTCTATGGCAGGATAAAGTCTGTGTGGCTTGACCCAAACTCAAGCTTAATACATT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| 3UTR TCA 90 bp | CAAACCAACCACAGCTTGTATTTCTTCCATAGAAAAACAACGTTTTaGAAATCTGCAGAGAAAGAGACAGACAGAGAGATACACAGAGAC | + |
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Preference number: 1 (lower is better) Translates to: QTNHSLYFFHRKTTF*KSAEKETDREIHRD Trigger: GTCTCTGTGTATCTCTCTGTCTGTCTCTTTCTCTGCAGATTTTCAAAACGTTGTTTTTCTATGGAAGAAATACAAGCTGTGGTTGGTTTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| 3UTR-3UTR TCA 90 bp | GAACTTATACTGGGGCTCCCAATGGTGCCTTCTGGAAAACATCTATGTCTTTCATCCCATGACCGGGAATaGGGAAAGAAGCACTGGGGG | + |
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Preference number: 2 (lower is better) Translates to: ELILGLPMVPSGKHLCLSSHDRE*GKKHWG Trigger: CCCCCAGTGCTTCTTTCCTCATTCCCGGTCATGGGA...TGAAAGACATAGATGTTTTCCAGAAGGCACCATTGGGAGCCCCAGTATAAGTTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| 3UTR-3UTR TCA 90 bp | GAAGTGAGGGAGGGGAGACATATGCACAGGAGAGAAAGAGAGAGACAGAGACAAGCACTATACAAATGGTaGAGACAGCTGGACAGCCGT | + |
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Preference number: 2 (lower is better) Translates to: EVREGRHMHRRERERQRQALYKW*RQLDSR Trigger: ACGGCTGTCCAGCTGTCTTCACCATTTGTATAGTGC...TTGTCTCTGTCTCTCTCTTTCTCTCCTGTGCATATGTCTCCCCTCCCTCACTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| 3UTR-3UTR CCA 90 bp | CCCCATGGTATGAAGCAGCTGAGCCCACAAAGTTCTGGAGTCCTGAGTCCTAGGCCCAATGGTGCCTTCTaGAAAACATCTATGTCTTTC | + |
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Preference number: 2 (lower is better) Translates to: PHGMKQLSPQSSGVLSPRPNGAF*KTSMSF Trigger: GAAAGACATAGATGTTTTCCAGAAGGCACCATTGGG...CCTAGGACTCAGGACTCCAGAACTTTGTGGGCTCAGCTGCTTCATACCATGGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| 3UTR-3UTR CCA 90 bp | GAAGTGAGGGAGGGGAGACATATGCACAGGAGAGAAAGAGAGAGACAGAGACAATACTGGGGCTCCCAATaGTGCCTTCTGGAAAACATC | + |
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Preference number: 2 (lower is better) Translates to: EVREGRHMHRRERERQRQYWGSQ*CLLENI Trigger: GATGTTTTCCAGAAGGCACCATTGGGAGCCCCAGTA...TTGTCTCTGTCTCTCTCTTTCTCTCCTGTGCATATGTCTCCCCTCCCTCACTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| 3UTR-3UTR TCA 90 bp | GAACTTATACTGGGGCTCCCAATGGTGCCTTCTGGAAAACATCTATGTCTTTCAGGCTATCACACCACATaGCTGAAATGTGCTGGCAAG | + |
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Preference number: 2 (lower is better) Translates to: ELILGLPMVPSGKHLCLSGYHTT*LKCAGK Trigger: CTTGCCAGCACATTTCAGTCATGTGGTGTGATAGCC...TGAAAGACATAGATGTTTTCCAGAAGGCACCATTGGGAGCCCCAGTATAAGTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| 3UTR-3UTR CCA 90 bp | CAACTCACTGCAAAGGGGGTGCATACCTGCCCTAAGAAAAACATTAAAGCACGAATGACTGAAATGTGCTaGCAAGTGAAAACGGGGCAG | + |
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Preference number: 2 (lower is better) Translates to: QLTAKGVHTCPKKNIKARMTEMC*QVKTGQ Trigger: CTGCCCCGTTTTCACTTGCCAGCACATTTCAGTCAT...TCGTGCTTTAATGTTTTTCTTAGGGCAGGTATGCACCCCCTTTGCAGTGAGTTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| 3UTR-3UTR CCA 90 bp | GAACTTATACTGGGGCTCCCAATGGTGCCTTCTGGAAAACATCTATGTCTTTCATCAGAGGAAGCTTCCTaGAATGCATCCTTACCACCC | + |
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Preference number: 2 (lower is better) Translates to: ELILGLPMVPSGKHLCLSSEEAS*NASLPP Trigger: GGGTGGTAAGGATGCATTCCAGGAAGCTTCCTCTGA...TGAAAGACATAGATGTTTTCCAGAAGGCACCATTGGGAGCCCCAGTATAAGTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| 3UTR-3UTR TCA 90 bp | GAAGTGAGGGAGGGGAGACATATGCACAGGAGAGAAAGAGAGAGACAGAGACAACTTCCCAAGGCTGAATaGATGATCTTTTTGATTGCT | + |
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Preference number: 2 (lower is better) Translates to: EVREGRHMHRRERERQRQLPKAE*MIFLIA Trigger: AGCAATCAAAAAGATCATTCATTCAGCCTTGGGAAG...TTGTCTCTGTCTCTCTCTTTCTCTCCTGTGCATATGTCTCCCCTCCCTCACTTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| 3UTR-3UTR TCA 90 bp | TGCAGGCTAAGCATTATTCTAGGCACTGGGGATACAGCAATAAAATCAAAGCAAAAATGTGCTGGCAAGTaGAAACGGGGCAGGGCTCAT | + |
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Preference number: 2 (lower is better) Translates to: CRLSIILGTGDTAIKSKQKCAGK*KRGRAH Trigger: ATGAGCCCTGCCCCGTTTTCACTTGCCAGCACATTT...TTGCTTTGATTTTATTGCTGTATCCCCAGTGCCTAGAATAATGCTTAGCCTGCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| 3UTR-3UTR GCA 90 bp | TATTCTAGGCACTGGGGATACAGCAATAAAATCAAAGCAAATGGAGTTCTTTCCTCTCTCCCAACTCACTaGAAAGGGGGTGCATACCTG | + |
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Preference number: 2 (lower is better) Translates to: YSRHWGYSNKIKANGVLSSLPTH*KGGAYL Trigger: CAGGTATGCACCCCCTTTGCAGTGAGTTGGGAGAGA...GGAAAGAACTCCATTTGCTTTGATTTTATTGCTGTATCCCCAGTGCCTAGAATA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| 3UTR-3UTR TCA 90 bp | CAACTCACTGCAAAGGGGGTGCATACCTGCCCTAAGAAAAACATTAAAGCACGAGAAAACTTTCAGGTGTaGTTCATCTCCAGTAAACCT | + |
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Preference number: 2 (lower is better) Translates to: QLTAKGVHTCPKKNIKARENFQV*FISSKP Trigger: AGGTTTACTGGAGATGAATCACACCTGAAAGTTTTC...TCGTGCTTTAATGTTTTTCTTAGGGCAGGTATGCACCCCCTTTGCAGTGAGTTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| 3UTR-3UTR GCA 90 bp | CAACTCACTGCAAAGGGGGTGCATACCTGCCCTAAGAAAAACATTAAAGCACGAACACAGACTTTATCCTaGCATAGAAGCTTCTGTCAT | + |
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Preference number: 2 (lower is better) Translates to: QLTAKGVHTCPKKNIKARTQTLS*HRSFCH Trigger: ATGACAGAAGCTTCTATGGCAGGATAAAGTCTGTGT...TCGTGCTTTAATGTTTTTCTTAGGGCAGGTATGCACCCCCTTTGCAGTGAGTTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| 3UTR-3UTR CCA 90 bp | CAACTCACTGCAAAGGGGGTGCATACCTGCCCTAAGAAAAACATTAAAGCACGATGTCCAAAACATCTTTaGCTATCACACCACATGACT | + |
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Preference number: 2 (lower is better) Translates to: QLTAKGVHTCPKKNIKARCPKHL*LSHHMT Trigger: AGTCATGTGGTGTGATAGCCAAAGATGTTTTGGACA...TCGTGCTTTAATGTTTTTCTTAGGGCAGGTATGCACCCCCTTTGCAGTGAGTTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| 3UTR-3UTR TCA 90 bp | TGCAGGCTAAGCATTATTCTAGGCACTGGGGATACAGCAATAAAATCAAAGCAAGTGGCTATATGGACATaGACATTGCAATTTCTGGTC | + |
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Preference number: 2 (lower is better) Translates to: CRLSIILGTGDTAIKSKQVAIWT*TLQFLV Trigger: GACCAGAAATTGCAATGTTCATGTCCATATAGCCAC...TTGCTTTGATTTTATTGCTGTATCCCCAGTGCCTAGAATAATGCTTAGCCTGCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| 3UTR-3UTR CCA 90 bp | AATAAAATCAAAGCAAATGGAGTTCTTTCCCTTTGGAGATCCGGTGTAGATTTAGTCAATGTATCCCCATaGTATGAAGCAGCTGAGCCC | + |
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Preference number: 2 (lower is better) Translates to: NKIKANGVLSLWRSGVDLVNVSP*YEAAEP Trigger: GGGCTCAGCTGCTTCATACCATGGGGATACATTGAC...TAAATCTACACCGGATCTCCAAAGGGAAAGAACTCCATTTGCTTTGATTTTATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| 3UTR CAA 90 bp | GTCCACCTTCATTCCAGTATCAGGTCTTGTAGGTACTTGAGAACTTaGATGTCGTCCCTAAAGACACATTCCAAAATAATTGTTCATGTC | + |
|
Preference number: 2 (lower is better) Translates to: VHLHSSIRSCRYLRT*MSSLKTHSKIIVHV Trigger: GACATGAACAATTATTTTGGAATGTGTCTTTAGGGACGACATCAAAGTTCTCAAGTACCTACAAGACCTGATACTGGAATGAAGGTGGAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| 3UTR-3UTR CCA 90 bp | TGCAGGCTAAGCATTATTCTAGGCACTGGGGATACAGCAATAAAATCAAAGCAACTACTGTGCTTAACTTaGGTTAATGGTGGCTATATG | + |
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Preference number: 2 (lower is better) Translates to: CRLSIILGTGDTAIKSKQLLCLT*VNGGYM Trigger: CATATAGCCACCATTAACCCAAGTTAAGCACAGTAG...TTGCTTTGATTTTATTGCTGTATCCCCAGTGCCTAGAATAATGCTTAGCCTGCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| 3UTR-3UTR TCA 90 bp | AATAAAATCAAAGCAAATGGAGTTCTTTCCCTTTGGAGATCCGGTGTAGATTTAGCAAAAGCTTTACTCTaGCCCAGTGTTTTTAACCCG | + |
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Preference number: 2 (lower is better) Translates to: NKIKANGVLSLWRSGVDLAKALL*PSVFNP Trigger: CGGGTTAAAAACACTGGGTCAGAGTAAAGCTTTTGC...TAAATCTACACCGGATCTCCAAAGGGAAAGAACTCCATTTGCTTTGATTTTATT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| 3UTR-3UTR TCA 90 bp | TATTCTAGGCACTGGGGATACAGCAATAAAATCAAAGCAAATGGAGTTCTTTCCTTGACTTCCCAAGGCTaGATGAATGATCTTTTTGAT | + |
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Preference number: 2 (lower is better) Translates to: YSRHWGYSNKIKANGVLSLTSQG*MNDLFD Trigger: ATCAAAAAGATCATTCATTCAGCCTTGGGAAGTCAA...GGAAAGAACTCCATTTGCTTTGATTTTATTGCTGTATCCCCAGTGCCTAGAATA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| 3UTR-3UTR CCA 90 bp | TGCAGGCTAAGCATTATTCTAGGCACTGGGGATACAGCAATAAAATCAAAGCAAAATGTGTTAAGTCCCTaGTACAGAAACAATCTTGAT | + |
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Preference number: 2 (lower is better) Translates to: CRLSIILGTGDTAIKSKQNVLSP*YRNNLD Trigger: ATCAAGATTGTTTCTGTACCAGGGACTTAACACATT...TTGCTTTGATTTTATTGCTGTATCCCCAGTGCCTAGAATAATGCTTAGCCTGCA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| 3UTR CAA 90 bp | AAAAAGAAAGTCCACCTTCATTCCAGTATCAGGTCTTGTAGGTACTaGAGAACTTTGATGTCGTCCCTAAAGACACATTCCAAAATAATT | + |
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Preference number: 2 (lower is better) Translates to: KKKVHLHSSIRSCRY*RTLMSSLKTHSKII Trigger: AATTATTTTGGAATGTGTCTTTAGGGACGACATCAAAGTTCTCAAGTACCTACAAGACCTGATACTGGAATGAAGGTGGACTTTCTTTTT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| 3UTR-3UTR TCA 90 bp | AATAAAATCAAAGCAAATGGAGTTCTTTCCCTTTGGAGATCCGGTGTAGATTTATGTTCAGAGGAGGTATaGAAACTTTCAGGTGTGATT | + |
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Preference number: 2 (lower is better) Translates to: NKIKANGVLSLWRSGVDLCSEEV*KLSGVI Trigger: AATCACACCTGAAAGTTTTCATACCTCCTCTGAACA...TAAATCTACACCGGATCTCCAAAGGGAAAGAACTCCATTTGCTTTGATTTTATT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| 3UTR-3UTR GCA 90 bp | TATTCTAGGCACTGGGGATACAGCAATAAAATCAAAGCAAATGGAGTTCTTTCCAATGATCTTTTTGATTaGTCTACTCTAACTTCCCCA | + |
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Preference number: 2 (lower is better) Translates to: YSRHWGYSNKIKANGVLSNDLFD*STLTSP Trigger: TGGGGAAGTTAGAGTAGAGCAATCAAAAAGATCATT...GGAAAGAACTCCATTTGCTTTGATTTTATTGCTGTATCCCCAGTGCCTAGAATA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| 3UTR-3UTR CAA 90 bp | CCCCATGGTATGAAGCAGCTGAGCCCACAAAGTTCTGGAGTCCTGAGTCCTAGGCCTCTCACATTCTTCTaGGTGTGGGAGGGCTATCTA | + |
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Preference number: 3 (lower is better) Translates to: PHGMKQLSPQSSGVLSPRPLTFF*VWEGYL Trigger: TAGATAGCCCTCCCACACCAAGAAGAATGTGAGAGG...CCTAGGACTCAGGACTCCAGAACTTTGTGGGCTCAGCTGCTTCATACCATGGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| 3UTR CCA 72 bp | AATAGTTGGCATTGGTGGCCCAGTAGAGGTCCAAAGTaGCCGGCTGAAGATGAGGCTGTCCTTTCCTATCCA | + |
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Preference number: 3 (lower is better) Translates to: NSWHWWPSRGPK*PAEDEAVLSYP Trigger: TGGATAGGAAAGGACAGCCTCATCTTCAGCCGGCCACTTTGGACCTCTACTGGGCCACCAATGCCAACTATT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| 3UTR TCA 72 bp | AGATTATCACGAGTTTGGGTCATGATTGTGCACTCCTaGAATCCCAACTCTTGGGAGGCAGAGGCCAGAGGA | + |
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Preference number: 3 (lower is better) Translates to: RLSRVWVMIVHS*NPNSWEAEARG Trigger: TCCTCTGGCCTCTGCCTCCCAAGAGTTGGGATTTCAGGAGTGCACAATCATGACCCAAACTCGTGATAATCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| 3UTR GCA 72 bp | GACCTCATTCCCTTCCTCAGAGGAAGCTTCCTGGAATaGATCCTTACCACCCTGACAAATACTAACACTACC | + |
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Preference number: 3 (lower is better) Translates to: DLIPFLRGSFLE*ILTTLTNTNTT Trigger: GGTAGTGTTAGTATTTGTCAGGGTGGTAAGGATGCATTCCAGGAAGCTTCCTCTGAGGAAGGGAATGAGGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| 3UTR GCA 72 bp | AGCTTGAGTTTGGGTCAAGCCACACAGACTTTATCCTaGCATAGAAGCTTCTGTCATTCATTCCAGAGTCTC | + |
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Preference number: 3 (lower is better) Translates to: SLSLGQATQTLS*HRSFCHSFQSL Trigger: GAGACTCTGGAATGAATGACAGAAGCTTCTATGGCAGGATAAAGTCTGTGTGGCTTGACCCAAACTCAAGCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| 3UTR-3UTR CAA 90 bp | AATAAAATCAAAGCAAATGGAGTTCTTTCCCTTTGGAGATCCGGTGTAGATTTACTGAAATCCCAACTCTaGGGAGGCAGAGGCCAGAGG | + |
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Preference number: 3 (lower is better) Translates to: NKIKANGVLSLWRSGVDLLKSQL*GGRGQR Trigger: CCTCTGGCCTCTGCCTCCCAAGAGTTGGGATTTCAG...TAAATCTACACCGGATCTCCAAAGGGAAAGAACTCCATTTGCTTTGATTTTATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| 3UTR TCA 72 bp | TCAGAGGAAGCTTCCTGGAATGCATCCTTACCACCCTaGCAAATACTAACACTACCCTTTTTGTTCACAGTA | + |
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Preference number: 3 (lower is better) Translates to: SEEASWNASLPP*QILTLPFLFTV Trigger: TACTGTGAACAAAAAGGGTAGTGTTAGTATTTGTCAGGGTGGTAAGGATGCATTCCAGGAAGCTTCCTCTGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| 3UTR CCA 72 bp | AATAATTCAAAGCACTATACAAATGGTGAAGACAGCTaGACAGCCGTTCTTCAAGGTCCCCAGATACATTCC | + |
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Preference number: 3 (lower is better) Translates to: NNSKHYTNGEDS*TAVLQGPQIHS Trigger: GGAATGTATCTGGGGACCTTGAAGAACGGCTGTCCAGCTGTCTTCACCATTTGTATAGTGCTTTGAATTATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| 3UTR-3UTR CAA 90 bp | TGCAGGCTAAGCATTATTCTAGGCACTGGGGATACAGCAATAAAATCAAAGCAAAGGTCTTGTAGGTACTaGAGAACTTTGATGTCGTCC | + |
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Preference number: 3 (lower is better) Translates to: CRLSIILGTGDTAIKSKQRSCRY*RTLMSS Trigger: GGACGACATCAAAGTTCTCAAGTACCTACAAGACCT...TTGCTTTGATTTTATTGCTGTATCCCCAGTGCCTAGAATAATGCTTAGCCTGCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| 3UTR TCA 72 bp | GGTTGTGTTCAGAGGAGGTATGAAAACTTTCAGGTGTaGTTCATCTCCAGTAAACCTCCTTTTCCAGTTAGA | + |
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Preference number: 3 (lower is better) Translates to: GCVQRRYENFQV*FISSKPPFPVR Trigger: TCTAACTGGAAAAGGAGGTTTACTGGAGATGAATCACACCTGAAAGTTTTCATACCTCCTCTGAACACAACC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| 3UTR TCA 72 bp | ATACACACTACATCTGAAACTGCAAAAGCTTTACTCTaGCCCAGTGTTTTTAACCCGCCTGTTGGTTCATAC | + |
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Preference number: 3 (lower is better) Translates to: IHTTSETAKALL*PSVFNPPVGSY Trigger: GTATGAACCAACAGGCGGGTTAAAAACACTGGGTCAGAGTAAAGCTTTTGCAGTTTCAGATGTAGTGTGTAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| 3UTR GCA 72 bp | CTTAGATTCAAGAACTCTATGTGTCAAGAGGCTGACTaGAATCACAAGGGCCAGCATTCTTTTATCACACAA | + |
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Preference number: 3 (lower is better) Translates to: LRFKNSMCQEAD*NHKGQHSFITQ Trigger: TTGTGTGATAAAAGAATGCTGGCCCTTGTGATTGCAGTCAGCCTCTTGACACATAGAGTTCTTGAATCTAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| 3UTR CCA 72 bp | AAAGGAACTTATACTGGGGCTCCCAATGGTGCCTTCTaGAAAACATCTATGTCTTTCATACATGGCAAGAAT | + |
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Preference number: 3 (lower is better) Translates to: KGTYTGAPNGAF*KTSMSFIHGKN Trigger: ATTCTTGCCATGTATGAAAGACATAGATGTTTTCCAGAAGGCACCATTGGGAGCCCCAGTATAAGTTCCTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| 3UTR-3UTR CAA 90 bp | TGCAGGCTAAGCATTATTCTAGGCACTGGGGATACAGCAATAAAATCAAAGCAAGGAAATGCCTCATGTTaGATTACAGGATATTCCAAT | + |
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Preference number: 3 (lower is better) Translates to: CRLSIILGTGDTAIKSKQGNASC*ITGYSN Trigger: ATTGGAATATCCTGTAATCAAACATGAGGCATTTCC...TTGCTTTGATTTTATTGCTGTATCCCCAGTGCCTAGAATAATGCTTAGCCTGCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| 3UTR-3UTR CAA 90 bp | TGCAGGCTAAGCATTATTCTAGGCACTGGGGATACAGCAATAAAATCAAAGCAACAAACCAACCACAGCTaGTATTTCTTCCATAGAAAA | + |
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Preference number: 3 (lower is better) Translates to: CRLSIILGTGDTAIKSKQQTNHS*YFFHRK Trigger: TTTTCTATGGAAGAAATACAAGCTGTGGTTGGTTTG...TTGCTTTGATTTTATTGCTGTATCCCCAGTGCCTAGAATAATGCTTAGCCTGCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| 3UTR TCA 72 bp | GTCACATTACAGAGAATACATTGGGTAAACCCAGACTaGAATCTCCAAGAGATAAAACATTGGCCTACTGAT | + |
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Preference number: 3 (lower is better) Translates to: VTLQRIHWVNPD*NLQEIKHWPTD Trigger: ATCAGTAGGCCAATGTTTTATCTCTTGGAGATTTCAGTCTGGGTTTACCCAATGTATTCTCTGTAATGTGAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| 3UTR-3UTR CAA 90 bp | AATAAAATCAAAGCAAATGGAGTTCTTTCCCTTTGGAGATCCGGTGTAGATTTAATTACAGAGAATACATaGGGTAAACCCAGACTGAAA | + |
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Preference number: 3 (lower is better) Translates to: NKIKANGVLSLWRSGVDLITENT*GKPRLK Trigger: TTTCAGTCTGGGTTTACCCAATGTATTCTCTGTAAT...TAAATCTACACCGGATCTCCAAAGGGAAAGAACTCCATTTGCTTTGATTTTATT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| 3UTR GCA 72 bp | GTGTTAAGTCCCTGGTACAGAAACAATCTTGATATTTaGATAAACATAGCAGTGCAAGAGAGATTTAAGCTT | + |
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Preference number: 3 (lower is better) Translates to: VLSPWYRNNLDI*INIAVQERFKL Trigger: AAGCTTAAATCTCTCTTGCACTGCTATGTTTATGCAAATATCAAGATTGTTTCTGTACCAGGGACTTAACAC 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| 3UTR CCA 72 bp | CACAATTTCAGATATCCATCCACAAAGGACAACAAGTaGCCCAACTGTAAGAAGTTGAAACTTAAAATGATT | + |
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Preference number: 3 (lower is better) Translates to: HNFRYPSTKDNK*PNCKKLKLKMI Trigger: AATCATTTTAAGTTTCAACTTCTTACAGTTGGGCCACTTGTTGTCCTTTGTGGATGGATATCTGAAATTGTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| 3UTR TCA 72 bp | ATAGAATGTGTTAAGTCCCTGGTACAGAAACAATCTTaGTATTTGCATAAACATAGCAGTGCAAGAGAGATT | + |
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Preference number: 3 (lower is better) Translates to: IECVKSLVQKQS*YLHKHSSAREI Trigger: AATCTCTCTTGCACTGCTATGTTTATGCAAATATCAAGATTGTTTCTGTACCAGGGACTTAACACATTCTAT 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| CDS-3UTR GCA 90 bp | GAAGTGAGGGAGGGGAGACATATGCACAGGAGAGAAAGAGAGAGACAGAGACAAGCCCTTGTACAGGGATaGCCGGAATTCCTTTGCGAG | + |
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Preference number: 4 (lower is better) Translates to: EVREGRHMHRRERERQRQALVQG*PEFLCE Trigger: CTCGCAAAGGAATTCCGGGCATCCCTGTACAAGGGC...TTGTCTCTGTCTCTCTCTTTCTCTCCTGTGCATATGTCTCCCCTCCCTCACTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| CDS-3UTR GCA 90 bp | TGCAGGCTAAGCATTATTCTAGGCACTGGGGATACAGCAATAAAATCAAAGCAATCAGGGGCGGTACGCTaGAAAGTCTCTGGCAGGGGC | + |
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Preference number: 4 (lower is better) Translates to: CRLSIILGTGDTAIKSKQSGAVR*KVSGRG Trigger: GCCCCTGCCAGAGACTTTGCAGCGTACCGCCCCTGA...TTGCTTTGATTTTATTGCTGTATCCCCAGTGCCTAGAATAATGCTTAGCCTGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| 3UTR CAA 72 bp | TTGGGTCATGATTGTGCACTCCTGAAATCCCAACTCTaGGGAGGCAGAGGCCAGAGGATCTTAGCAAGTTTC | + |
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Preference number: 4 (lower is better) Translates to: LGHDCALLKSQL*GGRGQRILASF Trigger: GAAACTTGCTAAGATCCTCTGGCCTCTGCCTCCCAAGAGTTGGGATTTCAGGAGTGCACAATCATGACCCAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| CDS-3UTR TCA 90 bp | GAAGTGAGGGAGGGGAGACATATGCACAGGAGAGAAAGAGAGAGACAGAGACAAAAGGCGGAGGGTACATaGACTCAATTTTGCAGAAGT | + |
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Preference number: 4 (lower is better) Translates to: EVREGRHMHRRERERQRQKAEGT*TQFCRS Trigger: ACTTCTGCAAAATTGAGTTCATGTACCCTCCGCCTT...TTGTCTCTGTCTCTCTCTTTCTCTCCTGTGCATATGTCTCCCCTCCCTCACTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| CDS-3UTR TCA 90 bp | GAACTTATACTGGGGCTCCCAATGGTGCCTTCTGGAAAACATCTATGTCTTTCAGAACTGAGAAGAAGTTaGGAGCCAAGAACAGCAGCC | + |
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Preference number: 4 (lower is better) Translates to: ELILGLPMVPSGKHLCLSELRRS*EPRTAA Trigger: GGCTGCTGTTCTTGGCTCTCAACTTCTTCTCAGTTC...TGAAAGACATAGATGTTTTCCAGAAGGCACCATTGGGAGCCCCAGTATAAGTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| 3UTR CAA 72 bp | GTCCACCTTCATTCCAGTATCAGGTCTTGTAGGTACTaGAGAACTTTGATGTCGTCCCTAAAGACACATTCC | + |
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Preference number: 4 (lower is better) Translates to: VHLHSSIRSCRY*RTLMSSLKTHS Trigger: GGAATGTGTCTTTAGGGACGACATCAAAGTTCTCAAGTACCTACAAGACCTGATACTGGAATGAAGGTGGAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| CDS-3UTR TCA 90 bp | TGCAGGCTAAGCATTATTCTAGGCACTGGGGATACAGCAATAAAATCAAAGCAATTCTGTTACTTGAACTaGGAAGAAGTTGAGAGCCAA | + |
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Preference number: 4 (lower is better) Translates to: CRLSIILGTGDTAIKSKQFCYLN*EEVESQ Trigger: TTGGCTCTCAACTTCTTCTCAGTTCAAGTAACAGAA...TTGCTTTGATTTTATTGCTGTATCCCCAGTGCCTAGAATAATGCTTAGCCTGCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| CDS-3UTR GCA 90 bp | TCAATAAATGTATTAAGCTTGAGTTTGGGTCAAGCCACACAGACTTTATCCTGCACAAGCAGGGGCGACTaGTTTACCAAAATCTTGTTT | + |
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Preference number: 4 (lower is better) Translates to: SINVLSLSLGQATQTLSCTSRGD*FTKILF Trigger: AAACAAGATTTTGGTAAAGCAGTCGCCCCTGCTTGT...GCAGGATAAAGTCTGTGTGGCTTGACCCAAACTCAAGCTTAATACATTTATTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| CDS-3UTR GCA 90 bp | AATAAAATCAAAGCAAATGGAGTTCTTTCCCTTTGGAGATCCGGTGTAGATTTATGCCCGGAATTCCTTTaGGAGAAGGTTGTAGGAATA | + |
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Preference number: 4 (lower is better) Translates to: NKIKANGVLSLWRSGVDLCPEFL*EKVVGI Trigger: TATTCCTACAACCTTCTCGCAAAGGAATTCCGGGCA...TAAATCTACACCGGATCTCCAAAGGGAAAGAACTCCATTTGCTTTGATTTTATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| CDS TCA 90 bp | CTGCAAAGTCTCTGGCAGGGGCGTAGGGCTGGTAAGGCTTTCGAGTaGGCCCAGGCCTCCGGGGAGTCATGTTCATGTAGTCACTTTGAA | + |
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Preference number: 5 (lower is better) Translates to: LQSLWQGRRAGKAFE*AQASGESCSCSHFE Trigger: TTCAAAGTGACTACATGAACATGACTCCCCGGAGGCCTGGGCTCACTCGAAAGCCTTACCAGCCCTACGCCCCTGCCAGAGACTTTGCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| CDS GCA 90 bp | CACGTCGCTGTTCACGCCCTTGTACAGGGATGCCCGGAATTCCTTTaGGAGAAGGTTGTAGGAATACCTGCAGCTGAGGCTGACCTCGTT | + |
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Preference number: 5 (lower is better) Translates to: HVAVHALVQGCPEFL*EKVVGIPAAEADLV Trigger: AACGAGGTCAGCCTCAGCTGCAGGTATTCCTACAACCTTCTCGCAAAGGAATTCCGGGCATCCCTGTACAAGGGCGTGAACAGCGACGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| CDS GCA 90 bp | CCCGACACAGACTTCCACGTCGCTGTTCACGCCCTTGTACAGGGATaGCCGGAATTCCTTTGCGAGAAGGTTGTAGGAATACCTGCAGCT | + |
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Preference number: 5 (lower is better) Translates to: PDTDFHVAVHALVQG*PEFLCEKVVGIPAA Trigger: AGCTGCAGGTATTCCTACAACCTTCTCGCAAAGGAATTCCGGGCATCCCTGTACAAGGGCGTGAACAGCGACGTGGAAGTCTGTGTCGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| CDS-3UTR CAA 90 bp | TATTCTAGGCACTGGGGATACAGCAATAAAATCAAAGCAAATGGAGTTCTTTCCGTTCATGTAGTCACTTaGAAGGAGTCTGTTCCTTCT | + |
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Preference number: 5 (lower is better) Translates to: YSRHWGYSNKIKANGVLSVHVVT*KESVPS Trigger: AGAAGGAACAGACTCCTTCAAAGTGACTACATGAAC...GGAAAGAACTCCATTTGCTTTGATTTTATTGCTGTATCCCCAGTGCCTAGAATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| CDS TCA 72 bp | CTCTGGCAGGGGCGTAGGGCTGGTAAGGCTTTCGAGTaGGCCCAGGCCTCCGGGGAGTCATGTTCATGTAGT | + |
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Preference number: 6 (lower is better) Translates to: LWQGRRAGKAFE*AQASGESCSCS Trigger: ACTACATGAACATGACTCCCCGGAGGCCTGGGCTCACTCGAAAGCCTTACCAGCCCTACGCCCCTGCCAGAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| CDS CAA 72 bp | TTCCCGACACAGACTTCCACGTCGCTGTTCACGCCCTaGTACAGGGATGCCCGGAATTCCTTTGCGAGAAGG | + |
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Preference number: 6 (lower is better) Translates to: FPTQTSTSLFTP*YRDARNSFARR Trigger: CCTTCTCGCAAAGGAATTCCGGGCATCCCTGTACAAGGGCGTGAACAGCGACGTGGAAGTCTGTGTCGGGAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| CDS GCA 72 bp | GTTCACGCCCTTGTACAGGGATGCCCGGAATTCCTTTaGGAGAAGGTTGTAGGAATACCTGCAGCTGAGGCT | + |
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Preference number: 6 (lower is better) Translates to: VHALVQGCPEFL*EKVVGIPAAEA Trigger: AGCCTCAGCTGCAGGTATTCCTACAACCTTCTCGCAAAGGAATTCCGGGCATCCCTGTACAAGGGCGTGAAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| CDS CAA 72 bp | CCCAGGCCTCCGGGGAGTCATGTTCATGTAGTCACTTaGAAGGAGTCTGTTCCTTCTACTATTTGTCCAGAT | + |
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Preference number: 6 (lower is better) Translates to: PRPPGSHVHVVT*KESVPSTICPD Trigger: ATCTGGACAAATAGTAGAAGGAACAGACTCCTTCAAAGTGACTACATGAACATGACTCCCCGGAGGCCTGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| CDS CAA 90 bp | TCGAGTGAGCCCAGGCCTCCGGGGAGTCATGTTCATGTAGTCACTTaGAAGGAGTCTGTTCCTTCTACTATTTGTCCAGATAACACAAAG | + |
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Preference number: 6 (lower is better) Translates to: SSEPRPPGSHVHVVT*KESVPSTICPDNTK Trigger: CTTTGTGTTATCTGGACAAATAGTAGAAGGAACAGACTCCTTCAAAGTGACTACATGAACATGACTCCCCGGAGGCCTGGGCTCACTCGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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| CDS TCA 72 bp | TGCTCCTCTCGTTGTCTAGGTAAGGCGGAGGGTACATaGACTCAATTTTGCAGAAGTAAATATCTGTGTGAT | + |
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Preference number: 6 (lower is better) Translates to: CSSRCLGKAEGT*TQFCRSKYLCD Trigger: ATCACACAGATATTTACTTCTGCAAAATTGAGTTCATGTACCCTCCGCCTTACCTAGACAACGAGAGGAGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027165.3 |
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