Pregenerated sensors for CD27 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030336Ensembl transcript IDs: ENSMUST00000032486.13, ENSMUST00000112281.8, ENSMUST00000112282.3
Found 65 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GGAATCAAACTCTGGTCCTCTGGAGGAACACTTCGTGCTCCTCACTaGCAAGCCCCCTCTGGAGCCCTTGGTGAGCCATTTCCACCCCTG | + |
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Preference number: 1 (lower is better) Translates to: GIKLWSSGGTLRAPH*QAPSGALGEPFPPL Trigger: CAGGGGTGGAAATGGCTCACCAAGGGCTCCAGAGGGGGCTTGGCAGTGAGGAGCACGAAGTGTTCCTCCAGAGGACCAGAGTTTGATTCC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032486.13 |
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| 3UTR CCA 90 bp | GGTTTCGATCCATTTGACAGTGCTGGGAATCAAACTCTGGTCCTCTaGAGGAACACTTCGTGCTCCTCACTGCCAAGCCCCCTCTGGAGC | + |
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Preference number: 1 (lower is better) Translates to: GFDPFDSAGNQTLVL*RNTSCSSLPSPLWS Trigger: GCTCCAGAGGGGGCTTGGCAGTGAGGAGCACGAAGTGTTCCTCCAGAGGACCAGAGTTTGATTCCCAGCACTGTCAAATGGATCGAAACC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032486.13 |
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| 3UTR GCA 90 bp | TGTGTGTGTGTGTGTGTGTGTGTGTGTCCGTCCTGTGTTTGTAGATaGCAGAGGAGGTCAAAGGTGTCAGACCCTCTGAAAGTAGAGTTA | + |
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Preference number: 1 (lower is better) Translates to: CVCVCVCVCPSCVCR*QRRSKVSDPLKVEL Trigger: TAACTCTACTTTCAGAGGGTCTGACACCTTTGACCTCCTCTGGCATCTACAAACACAGGACGGACACACACACACACACACACACACACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032486.13 |
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| 3UTR CAA 90 bp | GTGTCAGACCCTCTGAAAGTAGAGTTACAGCTGGTTTCGATCCATTaGACAGTGCTGGGAATCAAACTCTGGTCCTCTGGAGGAACACTT | + |
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Preference number: 2 (lower is better) Translates to: VSDPLKVELQLVSIH*TVLGIKLWSSGGTL Trigger: AAGTGTTCCTCCAGAGGACCAGAGTTTGATTCCCAGCACTGTCAAATGGATCGAAACCAGCTGTAACTCTACTTTCAGAGGGTCTGACAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032486.13 |
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| 3UTR-3UTR CAA 90 bp | GCTCCTCACTGCCAAGCCCCCTCTGGAGCCCTTGGTGAGCCATTTCCACCCCTGACTGGGATCCTGCTCTaGTCCCTGTTGGTCTCAGAA | + |
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Preference number: 3 (lower is better) Translates to: APHCQAPSGALGEPFPPLTGILL*SLLVSE Trigger: TTCTGAGACCAACAGGGACAAGAGCAGGATCCCAGT...CAGGGGTGGAAATGGCTCACCAAGGGCTCCAGAGGGGGCTTGGCAGTGAGGAGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032486.13 |
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| 3UTR TCA 72 bp | GGTTCTGATGACCATGACAGGGGAGCAGGCCACCATTaGGGTCTCTGTGGATGGCCCCTCGTCAGAAAGGGC | + |
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Preference number: 3 (lower is better) Translates to: GSDDHDRGAGHH*GLCGWPLVRKG Trigger: GCCCTTTCTGACGAGGGGCCATCCACAGAGACCTCAATGGTGGCCTGCTCCCCTGTCATGGTCATCAGAACC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032486.13 ENSMUST00000112281.8 |
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| 3UTR GCA 72 bp | CTCTGGTCCTCTGGAGGAACACTTCGTGCTCCTCACTaGCAAGCCCCCTCTGGAGCCCTTGGTGAGCCATTT | + |
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Preference number: 3 (lower is better) Translates to: LWSSGGTLRAPH*QAPSGALGEPF Trigger: AAATGGCTCACCAAGGGCTCCAGAGGGGGCTTGGCAGTGAGGAGCACGAAGTGTTCCTCCAGAGGACCAGAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032486.13 |
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| 3UTR GCA 72 bp | GGGAATCAAACTCTGGTCCTCTGGAGGAACACTTCGTaGTCCTCACTGCCAAGCCCCCTCTGGAGCCCTTGG | + |
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Preference number: 3 (lower is better) Translates to: GNQTLVLWRNTS*SSLPSPLWSPW Trigger: CCAAGGGCTCCAGAGGGGGCTTGGCAGTGAGGAGCACGAAGTGTTCCTCCAGAGGACCAGAGTTTGATTCCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032486.13 |
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| 3UTR GCA 72 bp | AGTCTCCCCAGCTTGCTGGGCCACACACTGGGATCCTaGTCTTGTCCCTGTTGGTCTCAGAAGGGCAGTTTG | + |
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Preference number: 3 (lower is better) Translates to: SLPSLLGHTLGS*SCPCWSQKGSL Trigger: CAAACTGCCCTTCTGAGACCAACAGGGACAAGAGCAGGATCCCAGTGTGTGGCCCAGCAAGCTGGGGAGACT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032486.13 |
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| 3UTR CCA 72 bp | CCATTTGACAGTGCTGGGAATCAAACTCTGGTCCTCTaGAGGAACACTTCGTGCTCCTCACTGCCAAGCCCC | + |
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Preference number: 3 (lower is better) Translates to: PFDSAGNQTLVL*RNTSCSSLPSP Trigger: GGGGCTTGGCAGTGAGGAGCACGAAGTGTTCCTCCAGAGGACCAGAGTTTGATTCCCAGCACTGTCAAATGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032486.13 |
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| 3UTR CCA 72 bp | GAGCCATTTCCACCCCTGGCATGTAGTTTTGTCAGCTaGACGGTTTCACTTAGAGTAAGTGTGCTTTATAGC | + |
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Preference number: 3 (lower is better) Translates to: EPFPPLACSFVS*TVSLRVSVLYS Trigger: GCTATAAAGCACACTTACTCTAAGTGAAACCGTCCAGCTGACAAAACTACATGCCAGGGGTGGAAATGGCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032486.13 |
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| CDS-3UTR GCA 90 bp | GGGAGCAGGCCACCATTGAGGTCTCTGTGGATGGCCCCTCGTCAGAAAGGGCCCCCAAGGTCCCCAGCATaGAGAGCCAGTAGGGAGGTG | + |
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Preference number: 4 (lower is better) Translates to: GSRPPLRSLWMAPRQKGPPRSPA*RASREV Trigger: CACCTCCCTACTGGCTCTGCATGCTGGGGACCTTGG...GGGCCCTTTCTGACGAGGGGCCATCCACAGAGACCTCAATGGTGGCCTGCTCCC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000032486.13 ENSMUST00000112281.8 ENSMUST00000112282.3 |
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| CDS-3UTR CCA 90 bp | CCATTGAGGTCTCTGTGGATGGCCCCTCGTCAGAAAGGGCCCCACCAGCACCCGCCGGGTGTGGTAGTCTaGAGAGAAGGAGGTGCCTGG | + |
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Preference number: 4 (lower is better) Translates to: PLRSLWMAPRQKGPHQHPPGVVV*REGGAW Trigger: CCAGGCACCTCCTTCTCTCCAGACTACCACACCCGG...CGGGTGCTGGTGGGGCCCTTTCTGACGAGGGGCCATCCACAGAGACCTCAATGG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032486.13 ENSMUST00000112281.8 |
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| CDS-3UTR GCA 90 bp | CCATTGAGGTCTCTGTGGATGGCCCCTCGTCAGAAAGGGCCCCACCAGCACCCGGTCGAGTTGGGAAGCTaGCTGTGTAGGGGCCAGGAT | + |
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Preference number: 4 (lower is better) Translates to: PLRSLWMAPRQKGPHQHPVELGS*LCRGQD Trigger: ATCCTGGCCCCTACACAGGCAGCTTCCCAACTCGAC...CGGGTGCTGGTGGGGCCCTTTCTGACGAGGGGCCATCCACAGAGACCTCAATGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000032486.13 ENSMUST00000112281.8 ENSMUST00000112282.3 |
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| CDS-3UTR GCA 90 bp | GGGGAGCAGGCCACCATTGAGGTCTCTGTGGATGGCCCCTCGTCAGAAAGGGCCGTCGAGTTGGGAAGCTaGCTGTGTAGGGGCCAGGAT | + |
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Preference number: 4 (lower is better) Translates to: GEQATIEVSVDGPSSERAVELGS*LCRGQD Trigger: ATCCTGGCCCCTACACAGGCAGCTTCCCAACTCGAC...GGCCCTTTCTGACGAGGGGCCATCCACAGAGACCTCAATGGTGGCCTGCTCCCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000032486.13 ENSMUST00000112281.8 ENSMUST00000112282.3 |
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| CDS-3UTR TCA 90 bp | AGCAGGCCACCATTGAGGTCTCTGTGGATGGCCCCTCGTCAGAAAGGGCCCCACGGCTTCTCTGTGCCATaGGGTAAGTGGGTGGGTGGT | + |
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Preference number: 4 (lower is better) Translates to: SRPPLRSLWMAPRQKGPHGFSVP*GKWVGG Trigger: ACCACCCACCCACTTACCTCATGGCACAGAGAAGCC...GTGGGGCCCTTTCTGACGAGGGGCCATCCACAGAGACCTCAATGGTGGCCTGCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032486.13 |
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| CDS-3UTR GCA 90 bp | GAGCAGGCCACCATTGAGGTCTCTGTGGATGGCCCCTCGTCAGAAAGGGCCCCAGTCGAGTTGGGAAGCTaGCTGTGTAGGGGCCAGGAT | + |
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Preference number: 4 (lower is better) Translates to: EQATIEVSVDGPSSERAPVELGS*LCRGQD Trigger: ATCCTGGCCCCTACACAGGCAGCTTCCCAACTCGAC...TGGGGCCCTTTCTGACGAGGGGCCATCCACAGAGACCTCAATGGTGGCCTGCTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000032486.13 ENSMUST00000112281.8 ENSMUST00000112282.3 |
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| CDS-3UTR GCA 90 bp | GCCACCATTGAGGTCTCTGTGGATGGCCCCTCGTCAGAAAGGGCCCCACCAGCATCACAAAGATCCGGATaGAGTCCGAGCTGCACAGGG | + |
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Preference number: 4 (lower is better) Translates to: ATIEVSVDGPSSERAPPASQRSG*SPSCTG Trigger: CCCTGTGCAGCTCGGACTGCATCCGGATCTTTGTGA...TGCTGGTGGGGCCCTTTCTGACGAGGGGCCATCCACAGAGACCTCAATGGTGGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000032486.13 ENSMUST00000112281.8 ENSMUST00000112282.3 |
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| CDS-3UTR GCA 90 bp | AGGCCACCATTGAGGTCTCTGTGGATGGCCCCTCGTCAGAAAGGGCCCCACCAGCTGGAGAGAAGGAGGTaGCTGGTATACAGGGATCAC | + |
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Preference number: 4 (lower is better) Translates to: RPPLRSLWMAPRQKGPHQLERRR*LVYRDH Trigger: GTGATCCCTGTATACCAGGCACCTCCTTCTCTCCAG...CTGGTGGGGCCCTTTCTGACGAGGGGCCATCCACAGAGACCTCAATGGTGGCCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032486.13 ENSMUST00000112281.8 |
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| CDS-3UTR GCA 90 bp | GTGCTCCTCACTGCCAAGCCCCCTCTGGAGCCCTTGGTGAGCCATTTCCACCCCAAACCAGAGTTACAATaGCTGCAGCTCTCGCAGTGG | + |
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Preference number: 4 (lower is better) Translates to: VLLTAKPPLEPLVSHFHPKPELQ*LQLSQW Trigger: CCACTGCGAGAGCTGCAGGCATTGTAACTCTGGTTT...GGGGTGGAAATGGCTCACCAAGGGCTCCAGAGGGGGCTTGGCAGTGAGGAGCAC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032486.13 |
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| CDS-3UTR GCA 90 bp | ACAGGGGAGCAGGCCACCATTGAGGTCTCTGTGGATGGCCCCTCGTCAGAAAGGTCACAAAGATCCGGATaGAGTCCGAGCTGCACAGGG | + |
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Preference number: 4 (lower is better) Translates to: TGEQATIEVSVDGPSSERSQRSG*SPSCTG Trigger: CCCTGTGCAGCTCGGACTGCATCCGGATCTTTGTGA...CCTTTCTGACGAGGGGCCATCCACAGAGACCTCAATGGTGGCCTGCTCCCCTGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000032486.13 ENSMUST00000112281.8 ENSMUST00000112282.3 |
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| CDS-3UTR CCA 90 bp | GGGAGCAGGCCACCATTGAGGTCTCTGTGGATGGCCCCTCGTCAGAAAGGGCCCCACAAAGAATGTACCTaGCTCACACATCCGGCAGCA | + |
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Preference number: 4 (lower is better) Translates to: GSRPPLRSLWMAPRQKGPHKECT*LTHPAA Trigger: TGCTGCCGGATGTGTGAGCCAGGTACATTCTTTGTG...GGGCCCTTTCTGACGAGGGGCCATCCACAGAGACCTCAATGGTGGCCTGCTCCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032486.13 ENSMUST00000112281.8 |
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| CDS-3UTR CCA 90 bp | CCATTGAGGTCTCTGTGGATGGCCCCTCGTCAGAAAGGGCCCCACCAGCACCCGTATAGACAGTCGAGTTaGGAAGCTGCCTGTGTAGGG | + |
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Preference number: 4 (lower is better) Translates to: PLRSLWMAPRQKGPHQHPYRQSS*EAACVG Trigger: CCCTACACAGGCAGCTTCCCAACTCGACTGTCTATA...CGGGTGCTGGTGGGGCCCTTTCTGACGAGGGGCCATCCACAGAGACCTCAATGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000032486.13 ENSMUST00000112281.8 ENSMUST00000112282.3 |
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| CDS-3UTR CCA 90 bp | GGGGAGCAGGCCACCATTGAGGTCTCTGTGGATGGCCCCTCGTCAGAAAGGGCCTATAGACAGTCGAGTTaGGAAGCTGCCTGTGTAGGG | + |
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Preference number: 4 (lower is better) Translates to: GEQATIEVSVDGPSSERAYRQSS*EAACVG Trigger: CCCTACACAGGCAGCTTCCCAACTCGACTGTCTATA...GGCCCTTTCTGACGAGGGGCCATCCACAGAGACCTCAATGGTGGCCTGCTCCCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000032486.13 ENSMUST00000112281.8 ENSMUST00000112282.3 |
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| CDS-3UTR GCA 90 bp | TCACAGGAAAGGGTTCTGATGACCATGACAGGGGAGCAGGCCACCATTGAGGTCCCAAGGTCCCCAGCATaGAGAGCCAGTAGGGAGGTG | + |
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Preference number: 4 (lower is better) Translates to: SQERVLMTMTGEQATIEVPRSPA*RASREV Trigger: CACCTCCCTACTGGCTCTGCATGCTGGGGACCTTGG...GACCTCAATGGTGGCCTGCTCCCCTGTCATGGTCATCAGAACCCTTTCCTGTGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032486.13 ENSMUST00000112281.8 |
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| CDS-3UTR GCA 90 bp | ACAGGGGAGCAGGCCACCATTGAGGTCTCTGTGGATGGCCCCTCGTCAGAAAGGCTGGAGAGAAGGAGGTaGCTGGTATACAGGGATCAC | + |
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Preference number: 4 (lower is better) Translates to: TGEQATIEVSVDGPSSERLERRR*LVYRDH Trigger: GTGATCCCTGTATACCAGGCACCTCCTTCTCTCCAG...CCTTTCTGACGAGGGGCCATCCACAGAGACCTCAATGGTGGCCTGCTCCCCTGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032486.13 ENSMUST00000112281.8 |
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| CDS-3UTR GCA 90 bp | GAGCAGGCCACCATTGAGGTCTCTGTGGATGGCCCCTCGTCAGAAAGGGCCCCATTCTCAGAGTTACAATaGCTGCAGCTCTCGCAGTGG | + |
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Preference number: 4 (lower is better) Translates to: EQATIEVSVDGPSSERAPFSELQ*LQLSQW Trigger: CCACTGCGAGAGCTGCAGGCATTGTAACTCTGAGAA...TGGGGCCCTTTCTGACGAGGGGCCATCCACAGAGACCTCAATGGTGGCCTGCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000112281.8 |
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| CDS-3UTR CCA 90 bp | CCACCATTGAGGTCTCTGTGGATGGCCCCTCGTCAGAAAGGGCCCCACCAGCACCACAAAGAATGTACCTaGCTCACACATCCGGCAGCA | + |
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Preference number: 4 (lower is better) Translates to: PPLRSLWMAPRQKGPHQHHKECT*LTHPAA Trigger: TGCTGCCGGATGTGTGAGCCAGGTACATTCTTTGTG...GTGCTGGTGGGGCCCTTTCTGACGAGGGGCCATCCACAGAGACCTCAATGGTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032486.13 ENSMUST00000112281.8 |
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| CDS-3UTR CCA 90 bp | AGGCCACCATTGAGGTCTCTGTGGATGGCCCCTCGTCAGAAAGGGCCCCACCAGTGCACTGCCAGTTCTTaGAACAGCTGCACTCAGCAT | + |
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Preference number: 4 (lower is better) Translates to: RPPLRSLWMAPRQKGPHQCTASS*NSCTQH Trigger: ATGCTGAGTGCAGCTGTTCCAAGAACTGGCAGTGCA...CTGGTGGGGCCCTTTCTGACGAGGGGCCATCCACAGAGACCTCAATGGTGGCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032486.13 |
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| CDS-3UTR TCA 90 bp | AGCAGGCCACCATTGAGGTCTCTGTGGATGGCCCCTCGTCAGAAAGGGCCCCACCCGTGGTTTCTTCTTTaGTGGAAGAACAAGATTGCA | + |
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Preference number: 4 (lower is better) Translates to: SRPPLRSLWMAPRQKGPHPWFLL*WKNKIA Trigger: TGCAATCTTGTTCTTCCATCAAAGAAGAAACCACGG...GTGGGGCCCTTTCTGACGAGGGGCCATCCACAGAGACCTCAATGGTGGCCTGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000032486.13 ENSMUST00000112281.8 ENSMUST00000112282.3 |
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| CDS-3UTR TCA 90 bp | GAGCAGGCCACCATTGAGGTCTCTGTGGATGGCCCCTCGTCAGAAAGGGCCCCACCGTGGTTTCTTCTTTaGTGGAAGAACAAGATTGCA | + |
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Preference number: 4 (lower is better) Translates to: EQATIEVSVDGPSSERAPPWFLL*WKNKIA Trigger: TGCAATCTTGTTCTTCCATCAAAGAAGAAACCACGG...TGGGGCCCTTTCTGACGAGGGGCCATCCACAGAGACCTCAATGGTGGCCTGCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000032486.13 ENSMUST00000112281.8 ENSMUST00000112282.3 |
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| CDS-3UTR GCA 90 bp | GGATCCTGCTCTTGTCCCTGTTGGTCTCAGAAGGGCAGTTTGTTGAGTATTCACCCAAGGTCCCCAGCATaGAGAGCCAGTAGGGAGGTG | + |
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Preference number: 4 (lower is better) Translates to: GSCSCPCWSQKGSLLSIHPRSPA*RASREV Trigger: CACCTCCCTACTGGCTCTGCATGCTGGGGACCTTGG...GTGAATACTCAACAAACTGCCCTTCTGAGACCAACAGGGACAAGAGCAGGATCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032486.13 ENSMUST00000112281.8 |
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| CDS-3UTR CCA 90 bp | TGCTCTTGTCCCTGTTGGTCTCAGAAGGGCAGTTTGTTGAGTATTCACAGGAAAGGTGGGTGGTGGCTGTaGGCTCGGGGTCTCAGATGG | + |
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Preference number: 4 (lower is better) Translates to: CSCPCWSQKGSLLSIHRKGGWWL*ARGLRW Trigger: CCATCTGAGACCCCGAGCCCACAGCCACCACCCACC...TTTCCTGTGAATACTCAACAAACTGCCCTTCTGAGACCAACAGGGACAAGAGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032486.13 |
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| CDS-3UTR CCA 90 bp | GGGCAGTTTGTTGAGTATTCACAGGAAAGGGTTCTGATGACCATGACAGGGGAGCATGAGGTAAGTGGGTaGGTGGTGGCTGTGGGCTCG | + |
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Preference number: 4 (lower is better) Translates to: GQFVEYSQERVLMTMTGEHEVSG*VVAVGS Trigger: CGAGCCCACAGCCACCACCCACCCACTTACCTCATG...CTCCCCTGTCATGGTCATCAGAACCCTTTCCTGTGAATACTCAACAAACTGCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032486.13 |
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| 3UTR CAA 72 bp | GCTGGGCCACACACTGGGATCCTGCTCTTGTCCCTGTaGGTCTCAGAAGGGCAGTTTGTTGAGTATTCACAG | + |
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Preference number: 4 (lower is better) Translates to: AGPHTGILLLSL*VSEGQFVEYSQ Trigger: CTGTGAATACTCAACAAACTGCCCTTCTGAGACCAACAGGGACAAGAGCAGGATCCCAGTGTGTGGCCCAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032486.13 |
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| CDS-3UTR CCA 90 bp | TGCTCTTGTCCCTGTTGGTCTCAGAAGGGCAGTTTGTTGAGTATTCACAGGAAACCGGGTGTGGTAGTCTaGAGAGAAGGAGGTGCCTGG | + |
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Preference number: 4 (lower is better) Translates to: CSCPCWSQKGSLLSIHRKPGVVV*REGGAW Trigger: CCAGGCACCTCCTTCTCTCCAGACTACCACACCCGG...TTTCCTGTGAATACTCAACAAACTGCCCTTCTGAGACCAACAGGGACAAGAGCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032486.13 ENSMUST00000112281.8 |
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| CDS-3UTR CCA 90 bp | TGCTCTTGTCCCTGTTGGTCTCAGAAGGGCAGTTTGTTGAGTATTCACAGGAAACACTCTGTACATTCCTaGTCCCTGCACTGCCAGTTC | + |
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Preference number: 4 (lower is better) Translates to: CSCPCWSQKGSLLSIHRKHSVHS*SLHCQF Trigger: GAACTGGCAGTGCAGGGACCAGGAATGTACAGAGTG...TTTCCTGTGAATACTCAACAAACTGCCCTTCTGAGACCAACAGGGACAAGAGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032486.13 |
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| CDS-3UTR CCA 90 bp | ATCCATTTGACAGTGCTGGGAATCAAACTCTGGTCCTCTGGAGGAACACTTCGTTATAGACAGTCGAGTTaGGAAGCTGCCTGTGTAGGG | + |
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Preference number: 4 (lower is better) Translates to: IHLTVLGIKLWSSGGTLRYRQSS*EAACVG Trigger: CCCTACACAGGCAGCTTCCCAACTCGACTGTCTATA...ACGAAGTGTTCCTCCAGAGGACCAGAGTTTGATTCCCAGCACTGTCAAATGGAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032486.13 |
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| CDS-3UTR TCA 90 bp | TCCTGCTCTTGTCCCTGTTGGTCTCAGAAGGGCAGTTTGTTGAGTATTCACAGGCCGTGGTTTCTTCTTTaGTGGAAGAACAAGATTGCA | + |
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Preference number: 4 (lower is better) Translates to: SCSCPCWSQKGSLLSIHRPWFLL*WKNKIA Trigger: TGCAATCTTGTTCTTCCATCAAAGAAGAAACCACGG...CCTGTGAATACTCAACAAACTGCCCTTCTGAGACCAACAGGGACAAGAGCAGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032486.13 ENSMUST00000112281.8 |
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| 3UTR CAA 72 bp | CCTCTGAAAGTAGAGTTACAGCTGGTTTCGATCCATTaGACAGTGCTGGGAATCAAACTCTGGTCCTCTGGA | + |
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Preference number: 4 (lower is better) Translates to: PLKVELQLVSIH*TVLGIKLWSSG Trigger: TCCAGAGGACCAGAGTTTGATTCCCAGCACTGTCAAATGGATCGAAACCAGCTGTAACTCTACTTTCAGAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032486.13 |
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| CDS GCA 90 bp | TCGAGTTGGGAAGCTGCCTGTGTAGGGGCCAGGATGGCTTCTCTGTaGCATGAGGTAAGTGGGTGGGTGGTGGCTGTGGGCTCGGGGTCT | + |
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Preference number: 5 (lower is better) Translates to: SSWEAACVGARMASL*HEVSGWVVAVGSGS Trigger: AGACCCCGAGCCCACAGCCACCACCCACCCACTTACCTCATGGCACAGAGAAGCCATCCTGGCCCCTACACAGGCAGCTTCCCAACTCGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032486.13 |
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| CDS GCA 90 bp | GCTGCCTGTGTAGGGGCCAGGATGGCTTCTCAGAGTTACAATGCCTaGAGCTCTCGCAGTGGGGCCGGGTGTGGTAGTCTGGAGAGAAGG | + |
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Preference number: 5 (lower is better) Translates to: AACVGARMASQSYNA*SSRSGAGCGSLERR Trigger: CCTTCTCTCCAGACTACCACACCCGGCCCCACTGCGAGAGCTGCAGGCATTGTAACTCTGAGAAGCCATCCTGGCCCCTACACAGGCAGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000112281.8 |
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| CDS-3UTR CAA 90 bp | CAGGGGAGCAGGCCACCATTGAGGTCTCTGTGGATGGCCCCTCGTCAGAAAGGGCTGCACTGCCAGTTCTaGGAACAGCTGCACTCAGCA | + |
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Preference number: 5 (lower is better) Translates to: QGSRPPLRSLWMAPRQKGLHCQF*EQLHSA Trigger: TGCTGAGTGCAGCTGTTCCAAGAACTGGCAGTGCAG...CCCTTTCTGACGAGGGGCCATCCACAGAGACCTCAATGGTGGCCTGCTCCCCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032486.13 |
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| CDS CCA 90 bp | GTTACAATGCCTGCAGCTCTCGCAGTGGGGCCGGGTGTGGTAGTCTaGAGAGAAGGAGGTGCCTGGTATACAGGGATCACACTGAGCAGC | + |
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Preference number: 5 (lower is better) Translates to: VTMPAALAVGPGVVV*REGGAWYTGITLSS Trigger: GCTGCTCAGTGTGATCCCTGTATACCAGGCACCTCCTTCTCTCCAGACTACCACACCCGGCCCCACTGCGAGAGCTGCAGGCATTGTAAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032486.13 ENSMUST00000112281.8 |
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| CDS GCA 90 bp | AGCTCTCGCAGTGGGGCCGGGTGTGGTAGTCTGGAGAGAAGGAGGTaGCTGGTATACAGGGATCACACTGAGCAGCTGTTCTGTCTTGTT | + |
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Preference number: 5 (lower is better) Translates to: SSRSGAGCGSLERRR*LVYRDHTEQLFCLV Trigger: AACAAGACAGAACAGCTGCTCAGTGTGATCCCTGTATACCAGGCACCTCCTTCTCTCCAGACTACCACACCCGGCCCCACTGCGAGAGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032486.13 ENSMUST00000112281.8 |
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| CDS CCA 90 bp | CTCGCAGTGGGGCCGGGTGTGGTAGTCTGGAGAGAAGGAGGTGCCTaGTATACAGGGATCACACTGAGCAGCTGTTCTGTCTTGTTCACA | + |
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Preference number: 5 (lower is better) Translates to: LAVGPGVVVWREGGA*YTGITLSSCSVLFT Trigger: TGTGAACAAGACAGAACAGCTGCTCAGTGTGATCCCTGTATACCAGGCACCTCCTTCTCTCCAGACTACCACACCCGGCCCCACTGCGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032486.13 ENSMUST00000112281.8 |
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| CDS-3UTR CAA 90 bp | GAACACTTCGTGCTCCTCACTGCCAAGCCCCCTCTGGAGCCCTTGGTGAGCCATGCAGTGACTGTGCAGTaGCGGATAAGAAAACCAGAG | + |
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Preference number: 5 (lower is better) Translates to: EHFVLLTAKPPLEPLVSHAVTVQ*RIRKPE Trigger: CTCTGGTTTTCTTATCCGCAACTGCACAGTCACTGC...ATGGCTCACCAAGGGCTCCAGAGGGGGCTTGGCAGTGAGGAGCACGAAGTGTTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032486.13 |
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| CDS GCA 90 bp | CTCCTCTTCCCTGGGGCAGCTGTAAGGACAAGGCTCTTCAGGCACTaGCTGCCGGTCTTCATTTGGCCCGTGGTTTCTTCTTTGATGGAA | + |
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Preference number: 5 (lower is better) Translates to: LLFPGAAVRTRLFRH*LPVFIWPVVSSLME Trigger: TTCCATCAAAGAAGAAACCACGGGCCAAATGAAGACCGGCAGGCAGTGCCTGAAGAGCCTTGTCCTTACAGCTGCCCCAGGGAAGAGGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000032486.13 ENSMUST00000112281.8 ENSMUST00000112282.3 |
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| CDS-3UTR CAA 90 bp | GCCACCATTGAGGTCTCTGTGGATGGCCCCTCGTCAGAAAGGGCCCCACCAGCAAGCAGCTGTTCTGTCTaGTTCACAGTCCTTCACAAA | + |
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Preference number: 5 (lower is better) Translates to: ATIEVSVDGPSSERAPPASSCSV*FTVLHK Trigger: TTTGTGAAGGACTGTGAACAAGACAGAACAGCTGCT...TGCTGGTGGGGCCCTTTCTGACGAGGGGCCATCCACAGAGACCTCAATGGTGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032486.13 ENSMUST00000112281.8 |
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| CDS-3UTR CAA 90 bp | GAGCAGGCCACCATTGAGGTCTCTGTGGATGGCCCCTCGTCAGAAAGGGCCCCAAGCAGCTGTTCTGTCTaGTTCACAGTCCTTCACAAA | + |
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Preference number: 5 (lower is better) Translates to: EQATIEVSVDGPSSERAPSSCSV*FTVLHK Trigger: TTTGTGAAGGACTGTGAACAAGACAGAACAGCTGCT...TGGGGCCCTTTCTGACGAGGGGCCATCCACAGAGACCTCAATGGTGGCCTGCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032486.13 ENSMUST00000112281.8 |
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| CDS CCA 90 bp | CTGGTCAGTGCAGGGTTTAGAGGAGGGTCACACTCTGTACATTCCTaGTCCCTGCACTGCCAGTTCTTGGAACAGCTGCACTCAGCATTG | + |
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Preference number: 5 (lower is better) Translates to: LVSAGFRGGSHSVHS*SLHCQFLEQLHSAL Trigger: CAATGCTGAGTGCAGCTGTTCCAAGAACTGGCAGTGCAGGGACCAGGAATGTACAGAGTGTGACCCTCCTCTAAACCCTGCACTGACCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032486.13 |
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| CDS-3UTR CAA 90 bp | ACAGGGGAGCAGGCCACCATTGAGGTCTCTGTGGATGGCCCCTCGTCAGAAAGGCCCGTGGTTTCTTCTTaGATGGAAGAACAAGATTGC | + |
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Preference number: 5 (lower is better) Translates to: TGEQATIEVSVDGPSSERPVVSS*MEEQDC Trigger: GCAATCTTGTTCTTCCATCAAAGAAGAAACCACGGG...CCTTTCTGACGAGGGGCCATCCACAGAGACCTCAATGGTGGCCTGCTCCCCTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000032486.13 ENSMUST00000112281.8 ENSMUST00000112282.3 |
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| CDS CCA 72 bp | GCCAGGATGGCTTCTCTGTGCCATGAGGTAAGTGGGTaGGTGGTGGCTGTGGGCTCGGGGTCTCAGATGGCT | + |
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Preference number: 6 (lower is better) Translates to: ARMASLCHEVSG*VVAVGSGSQMA Trigger: AGCCATCTGAGACCCCGAGCCCACAGCCACCACCCACCCACTTACCTCATGGCACAGAGAAGCCATCCTGGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032486.13 |
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| CDS GCA 72 bp | GTAGGGGCCAGGATGGCTTCTCAGAGTTACAATGCCTaGAGCTCTCGCAGTGGGGCCGGGTGTGGTAGTCTG | + |
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Preference number: 6 (lower is better) Translates to: VGARMASQSYNA*SSRSGAGCGSL Trigger: CAGACTACCACACCCGGCCCCACTGCGAGAGCTGCAGGCATTGTAACTCTGAGAAGCCATCCTGGCCCCTAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000112281.8 |
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| CDS CCA 72 bp | GTGGTGGCTGTGGGCTCGGGGTCTCAGATGGCTGTCTaGTCAGTGCAGGGTTTAGAGGAGGGTCACACTCTG | + |
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Preference number: 6 (lower is better) Translates to: VVAVGSGSQMAV*SVQGLEEGHTL Trigger: CAGAGTGTGACCCTCCTCTAAACCCTGCACTGACCAGACAGCCATCTGAGACCCCGAGCCCACAGCCACCAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032486.13 |
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| CDS GCA 72 bp | CCTGGGGCAGCTGTAAGGACAAGGCTCTTCAGGCACTaGCTGCCGGTCTTCATTTGGCCCGTGGTTTCTTCT | + |
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Preference number: 6 (lower is better) Translates to: PGAAVRTRLFRH*LPVFIWPVVSS Trigger: AGAAGAAACCACGGGCCAAATGAAGACCGGCAGGCAGTGCCTGAAGAGCCTTGTCCTTACAGCTGCCCCAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000032486.13 ENSMUST00000112281.8 ENSMUST00000112282.3 |
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| CDS CAA 90 bp | GGAGGGTCACACTCTGTACATTCCTGGTCCCTGCACTGCCAGTTCTaGGAACAGCTGCACTCAGCATTGGCAGTGACTGTGCAGTTGCGG | + |
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Preference number: 6 (lower is better) Translates to: GGSHSVHSWSLHCQF*EQLHSALAVTVQLR Trigger: CCGCAACTGCACAGTCACTGCCAATGCTGAGTGCAGCTGTTCCAAGAACTGGCAGTGCAGGGACCAGGAATGTACAGAGTGTGACCCTCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032486.13 |
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| CDS CCA 72 bp | GTCTATGGGATGACCGCTGGCTATAGACAGTCGAGTTaGGAAGCTGCCTGTGTAGGGGCCAGGATGGCTTCT | + |
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Preference number: 6 (lower is better) Translates to: VYGMTAGYRQSS*EAACVGARMAS Trigger: AGAAGCCATCCTGGCCCCTACACAGGCAGCTTCCCAACTCGACTGTCTATAGCCAGCGGTCATCCCATAGAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000032486.13 ENSMUST00000112281.8 ENSMUST00000112282.3 |
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| CDS CCA 72 bp | GCAGGGTTTAGAGGAGGGTCACACTCTGTACATTCCTaGTCCCTGCACTGCCAGTTCTTGGAACAGCTGCAC | + |
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Preference number: 6 (lower is better) Translates to: AGFRGGSHSVHS*SLHCQFLEQLH Trigger: GTGCAGCTGTTCCAAGAACTGGCAGTGCAGGGACCAGGAATGTACAGAGTGTGACCCTCCTCTAAACCCTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032486.13 |
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| CDS GCA 72 bp | TTAGAGGAGGGTCACACTCTGTACATTCCTGGTCCCTaGACTGCCAGTTCTTGGAACAGCTGCACTCAGCAT | + |
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Preference number: 6 (lower is better) Translates to: LEEGHTLYIPGP*TASSWNSCTQH Trigger: ATGCTGAGTGCAGCTGTTCCAAGAACTGGCAGTGCAGGGACCAGGAATGTACAGAGTGTGACCCTCCTCTAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032486.13 |
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| CDS CAA 90 bp | TCCTGGTCCCTGCACTGCCAGTTCTTGGAACAGCTGCACTCAGCATaGGCAGTGACTGTGCAGTTGCGGATAAGAAAACCAGAGTTACAA | + |
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Preference number: 6 (lower is better) Translates to: SWSLHCQFLEQLHSA*AVTVQLRIRKPELQ Trigger: TTGTAACTCTGGTTTTCTTATCCGCAACTGCACAGTCACTGCCAATGCTGAGTGCAGCTGTTCCAAGAACTGGCAGTGCAGGGACCAGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032486.13 |
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| CDS CAA 90 bp | AGCTGTAAGGACAAGGCTCTTCAGGCACTGCCTGCCGGTCTTCATTaGGCCCGTGGTTTCTTCTTTGATGGAAGAACAAGATTGCACCCA | + |
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Preference number: 6 (lower is better) Translates to: SCKDKALQALPAGLH*ARGFFFDGRTRLHP Trigger: TGGGTGCAATCTTGTTCTTCCATCAAAGAAGAAACCACGGGCCAAATGAAGACCGGCAGGCAGTGCCTGAAGAGCCTTGTCCTTACAGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032486.13 ENSMUST00000112281.8 ENSMUST00000112282.3 |
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| CDS TCA 72 bp | GCCTGCCGGTCTTCATTTGGCCCGTGGTTTCTTCTTTaGTGGAAGAACAAGATTGCACCCAGGACGAAGATA | + |
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Preference number: 6 (lower is better) Translates to: ACRSSFGPWFLL*WKNKIAPRTKI Trigger: TATCTTCGTCCTGGGTGCAATCTTGTTCTTCCATCAAAGAAGAAACCACGGGCCAAATGAAGACCGGCAGGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032486.13 ENSMUST00000112281.8 ENSMUST00000112282.3 |
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| CDS CAA 72 bp | GAACAGCTGCACTCAGCATTGGCAGTGACTGTGCAGTaGCGGATAAGAAAACCAGAGTTACAATGCCTGCAG | + |
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Preference number: 6 (lower is better) Translates to: EQLHSALAVTVQ*RIRKPELQCLQ Trigger: CTGCAGGCATTGTAACTCTGGTTTTCTTATCCGCAACTGCACAGTCACTGCCAATGCTGAGTGCAGCTGTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032486.13 |
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| CDS GCA 72 bp | TGGCCCGTGGTTTCTTCTTTGATGGAAGAACAAGATTaGACCCAGGACGAAGATAAGAAACATGCTGGAGAA | + |
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Preference number: 6 (lower is better) Translates to: WPVVSSLMEEQD*TQDEDKKHAGE Trigger: TTCTCCAGCATGTTTCTTATCTTCGTCCTGGGTGCAATCTTGTTCTTCCATCAAAGAAGAAACCACGGGCCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032486.13 ENSMUST00000112281.8 ENSMUST00000112282.3 |
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