Pregenerated sensors for CD24A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000047139Ensembl transcript IDs: ENSMUST00000058714.10, ENSMUST00000214476.2
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTAACTGCACTATGGCCTTATCGGTCAGATGAATCAATGACAAAATaGGTCTCCATTCCGCACCCCGTCCTTATCTCTACATCAAACCTG | + |
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Preference number: 1 (lower is better) Translates to: LTALWPYRSDESMTK*VSIPHPVLISTSNL Trigger: CAGGTTTGATGTAGAGATAAGGACGGGGTGCGGAATGGAGACCCATTTTGTCATTGATTCATCTGACCGATAAGGCCATAGTGCAGTTAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058714.10 |
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| 3UTR TCA 90 bp | AGCTTTCGAATATCACCTAACTGCACTATGGCCTTATCGGTCAGATaGATCAATGACAAAATGGGTCTCCATTCCGCACCCCGTCCTTAT | + |
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Preference number: 1 (lower is better) Translates to: SFRISPNCTMALSVR*INDKMGLHSAPRPY Trigger: ATAAGGACGGGGTGCGGAATGGAGACCCATTTTGTCATTGATTCATCTGACCGATAAGGCCATAGTGCAGTTAGGTGATATTCGAAAGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058714.10 |
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| 3UTR TCA 90 bp | GTGCTTGTGGTGAGTGAGAAACGACAATGGGAAATGTCTACTGTTTaGCTTTTGAAATCAGATTTATTCAGTGGTGGCTGGACTTGGGGA | + |
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Preference number: 1 (lower is better) Translates to: VLVVSEKRQWEMSTV*LLKSDLFSGGWTWG Trigger: TCCCCAAGTCCAGCCACCACTGAATAAATCTGATTTCAAAAGTCAAACAGTAGACATTTCCCATTGTCGTTTCTCACTCACCACAAGCAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058714.10 |
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| 3UTR TCA 90 bp | TCTCTGGAACCAGTGTACTCTAGTGAATTTGGTGCTTGTGGTGAGTaGGAAACGACAATGGGAAATGTCTACTGTTTGACTTTTGAAATC | + |
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Preference number: 1 (lower is better) Translates to: SLEPVYSSEFGACGE*ETTMGNVYCLTFEI Trigger: GATTTCAAAAGTCAAACAGTAGACATTTCCCATTGTCGTTTCTCACTCACCACAAGCACCAAATTCACTAGAGTACACTGGTTCCAGAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058714.10 |
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| 3UTR-3UTR CCA 90 bp | ATCAGATTTATTCAGTGGTGGCTGGACTTGGGGATGGGTTCCAATCCACCATTGATCACATTGGACTTGTaGTTGCCATTTGGGGTAGGT | + |
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Preference number: 2 (lower is better) Translates to: IRFIQWWLDLGMGSNPPLITLDL*LPFGVG Trigger: ACCTACCCCAAATGGCAACCACAAGTCCAATGTGAT...CAATGGTGGATTGGAACCCATCCCCAAGTCCAGCCACCACTGAATAAATCTGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058714.10 |
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| 3UTR CAA 90 bp | GGCCAACATGATTCTGCTCTCTGGAACCAGTGTACTCTAGTGAATTaGGTGCTTGTGGTGAGTGAGAAACGACAATGGGAAATGTCTACT | + |
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Preference number: 2 (lower is better) Translates to: GQHDSALWNQCTLVN*VLVVSEKRQWEMST Trigger: AGTAGACATTTCCCATTGTCGTTTCTCACTCACCACAAGCACCAAATTCACTAGAGTACACTGGTTCCAGAGAGCAGAATCATGTTGGCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058714.10 |
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| 3UTR-3UTR CCA 90 bp | CCAAAGAGAACAGTCAGAGTTCAACAACATGGAACTTTACCTAGAGCTTACGGTACAGCCAATTCGAGGTaGACCTGTTTCTTCCTGATC | + |
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Preference number: 2 (lower is better) Translates to: PKRTVRVQQHGTLPRAYGTANSR*TCFFLI Trigger: GATCAGGAAGAAACAGGTCCACCTCGAATTGGCTGT...ACCGTAAGCTCTAGGTAAAGTTCCATGTTGTTGAACTCTGACTGTTCTCTTTGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058714.10 |
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| 3UTR-3UTR TCA 90 bp | CCAAAGAGAACAGTCAGAGTTCAACAACATGGAACTTTACCTAGAGCTTACGGTGCCTTATCGGTCAGATaGATCAATGACAAAATGGGT | + |
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Preference number: 2 (lower is better) Translates to: PKRTVRVQQHGTLPRAYGALSVR*INDKMG Trigger: ACCCATTTTGTCATTGATTCATCTGACCGATAAGGC...ACCGTAAGCTCTAGGTAAAGTTCCATGTTGTTGAACTCTGACTGTTCTCTTTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058714.10 |
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| 3UTR-3UTR CCA 90 bp | TACATAAAGAGCATCAAAGAAGCTTTCGAATATCACCTAACTGCACTATGGCCTGAATCAATGACAAAATaGGTCTCCATTCCGCACCCC | + |
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Preference number: 2 (lower is better) Translates to: YIKSIKEAFEYHLTALWPESMTK*VSIPHP Trigger: GGGGTGCGGAATGGAGACCCATTTTGTCATTGATTC...AGGCCATAGTGCAGTTAGGTGATATTCGAAAGCTTCTTTGATGCTCTTTATGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058714.10 |
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| 3UTR-3UTR TCA 90 bp | ATCTCTACATCAAACCTGTGCCCAATTTCAAGTGAGAGTTTTAAGTGTCCACATCTCCGTGTTTTCTGTTaGGATATGGTAACAGCCAAT | + |
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Preference number: 2 (lower is better) Translates to: ISTSNLCPISSESFKCPHLRVFC*DMVTAN Trigger: ATTGGCTGTTACCATATCTCAACAGAAAACACGGAG...ATGTGGACACTTAAAACTCTCACTTGAAATTGGGCACAGGTTTGATGTAGAGAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000058714.10 ENSMUST00000214476.2 |
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| 3UTR-3UTR TCA 90 bp | CATAAAGAGCATCAAAGAAGCTTTCGAATATCACCTAACTGCACTATGGCCTTAGGTCAGATGAATCAATaGCAAAATGGGTCTCCATTC | + |
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Preference number: 2 (lower is better) Translates to: HKEHQRSFRISPNCTMALGQMNQ*QNGSPF Trigger: GAATGGAGACCCATTTTGTCATTGATTCATCTGACC...TAAGGCCATAGTGCAGTTAGGTGATATTCGAAAGCTTCTTTGATGCTCTTTATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058714.10 |
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| 3UTR-3UTR CCA 90 bp | TTCAAGGAAATCACATCAATTCTGAATGCTGTCTTCATCTTGGGATGTAAAACTCTTGTGGTTGCCATTTaGGGTAGGTGTAGAAGATGG | + |
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Preference number: 2 (lower is better) Translates to: FKEITSILNAVFILGCKTLVVAI*GRCRRW Trigger: CCATCTTCTACACCTACCCCAAATGGCAACCACAAG...AGTTTTACATCCCAAGATGAAGACAGCATTCAGAATTGATGTGATTTCCTTGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000058714.10 ENSMUST00000214476.2 |
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| 3UTR-3UTR CCA 90 bp | TTCAAGGAAATCACATCAATTCTGAATGCTGTCTTCATCTTGGGATGTAAAACTACAGCCAATTCGAGGTaGACCTGTTTCTTCCTGATC | + |
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Preference number: 2 (lower is better) Translates to: FKEITSILNAVFILGCKTTANSR*TCFFLI Trigger: GATCAGGAAGAAACAGGTCCACCTCGAATTGGCTGT...AGTTTTACATCCCAAGATGAAGACAGCATTCAGAATTGATGTGATTTCCTTGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000058714.10 ENSMUST00000214476.2 |
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| 3UTR-3UTR CCA 90 bp | TTCAAGGAAATCACATCAATTCTGAATGCTGTCTTCATCTTGGGATGTAAAACTATCACATTGGACTTGTaGTTGCCATTTGGGGTAGGT | + |
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Preference number: 2 (lower is better) Translates to: FKEITSILNAVFILGCKTITLDL*LPFGVG Trigger: ACCTACCCCAAATGGCAACCACAAGTCCAATGTGAT...AGTTTTACATCCCAAGATGAAGACAGCATTCAGAATTGATGTGATTTCCTTGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000058714.10 ENSMUST00000214476.2 |
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| 3UTR-3UTR CCA 90 bp | GAAGGTATGTGTATATCAAGGAAATTGGAAAAACTTACGGTAGAACCAAGCCCCAACGAAACAACACATTaGGAATTTAAAGCAACGCCT | + |
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Preference number: 2 (lower is better) Translates to: EGMCISRKLEKLTVEPSPNETTH*EFKATP Trigger: AGGCGTTGCTTTAAATTCCCAATGTGTTGTTTCGTT...GGGGCTTGGTTCTACCGTAAGTTTTTCCAATTTCCTTGATATACACATACCTTC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058714.10 |
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| 3UTR-3UTR TCA 90 bp | ATCTCTACATCAAACCTGTGCCCAATTTCAAGTGAGAGTTTTAAGTGTCCACATAAATCACATCAATTCTaGATGCTGTCTTCATCTTGG | + |
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Preference number: 2 (lower is better) Translates to: ISTSNLCPISSESFKCPHKSHQF*MLSSSW Trigger: CCAAGATGAAGACAGCATTCAGAATTGATGTGATTT...ATGTGGACACTTAAAACTCTCACTTGAAATTGGGCACAGGTTTGATGTAGAGAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000058714.10 ENSMUST00000214476.2 |
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| 3UTR-3UTR GCA 90 bp | GAAGGTATGTGTATATCAAGGAAATTGGAAAAACTTACGGTAGAACCAAGCCCCAAGACTCATAATTTTTaGCTTGCTAACAGAACACAC | + |
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Preference number: 2 (lower is better) Translates to: EGMCISRKLEKLTVEPSPKTHNF*LANRTH Trigger: GTGTGTTCTGTTAGCAAGGCAAAAATTATGAGTCTT...GGGGCTTGGTTCTACCGTAAGTTTTTCCAATTTCCTTGATATACACATACCTTC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000058714.10 |
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| 3UTR CCA 72 bp | CTATGGCCTTATCGGTCAGATGAATCAATGACAAAATaGGTCTCCATTCCGCACCCCGTCCTTATCTCTACA | + |
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Preference number: 3 (lower is better) Translates to: LWPYRSDESMTK*VSIPHPVLIST Trigger: TGTAGAGATAAGGACGGGGTGCGGAATGGAGACCCATTTTGTCATTGATTCATCTGACCGATAAGGCCATAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058714.10 |
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| 3UTR TCA 72 bp | ATATCACCTAACTGCACTATGGCCTTATCGGTCAGATaGATCAATGACAAAATGGGTCTCCATTCCGCACCC | + |
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Preference number: 3 (lower is better) Translates to: ISPNCTMALSVR*INDKMGLHSAP Trigger: GGGTGCGGAATGGAGACCCATTTTGTCATTGATTCATCTGACCGATAAGGCCATAGTGCAGTTAGGTGATAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058714.10 |
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| 3UTR CCA 72 bp | AAATCAGATTTATTCAGTGGTGGCTGGACTTGGGGATaGGTTCCAATCCACCATTGCCTGGCACATGTTAAT | + |
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Preference number: 3 (lower is better) Translates to: KSDLFSGGWTWG*VPIHHCLAHVN Trigger: ATTAACATGTGCCAGGCAATGGTGGATTGGAACCCATCCCCAAGTCCAGCCACCACTGAATAAATCTGATTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058714.10 |
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| 3UTR TCA 72 bp | AATCCCGTCGAATTTCGAATTCTCCGTGTTTTCTGTTaGGATATGGTAACAGCCAATTCGAGGTGGACCTGT | + |
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Preference number: 3 (lower is better) Translates to: NPVEFRILRVFC*DMVTANSRWTC Trigger: ACAGGTCCACCTCGAATTGGCTGTTACCATATCTCAACAGAAAACACGGAGAATTCGAAATTCGACGGGATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000058714.10 ENSMUST00000214476.2 |
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| 3UTR GCA 72 bp | ATTCCGCACCCCGTCCTTATCTCTACATCAAACCTGTaGCCAATTTCAAGTGAGAGTTTTAAGTGTCCACAT | + |
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Preference number: 3 (lower is better) Translates to: IPHPVLISTSNL*PISSESFKCPH Trigger: ATGTGGACACTTAAAACTCTCACTTGAAATTGGGCACAGGTTTGATGTAGAGATAAGGACGGGGTGCGGAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000058714.10 ENSMUST00000214476.2 |
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| 3UTR CCA 72 bp | GCTGGACTTGGGGATGGGTTCCAATCCACCATTGCCTaGCACATGTTAATTACTAGTAAAGGTCAAATACAA | + |
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Preference number: 3 (lower is better) Translates to: AGLGDGFQSTIA*HMLITSKGQIQ Trigger: TTGTATTTGACCTTTACTAGTAATTAACATGTGCCAGGCAATGGTGGATTGGAACCCATCCCCAAGTCCAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058714.10 |
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| 3UTR CCA 72 bp | TTTGAAATTAGCCAAGGCCAACATGATTCTGCTCTCTaGAACCAGTGTACTCTAGTGAATTTGGTGCTTGTG | + |
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Preference number: 3 (lower is better) Translates to: FEISQGQHDSAL*NQCTLVNLVLV Trigger: CACAAGCACCAAATTCACTAGAGTACACTGGTTCCAGAGAGCAGAATCATGTTGGCCTTGGCTAATTTCAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058714.10 |
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| 3UTR-3UTR CAA 90 bp | CATAAAGAGCATCAAAGAAGCTTTCGAATATCACCTAACTGCACTATGGCCTTAACATTGGACTTGTGGTaGCCATTTGGGGTAGGTGTA | + |
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Preference number: 3 (lower is better) Translates to: HKEHQRSFRISPNCTMALTLDLW*PFGVGV Trigger: TACACCTACCCCAAATGGCAACCACAAGTCCAATGT...TAAGGCCATAGTGCAGTTAGGTGATATTCGAAAGCTTCTTTGATGCTCTTTATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058714.10 |
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| 3UTR-3UTR CAA 90 bp | TACATAAAGAGCATCAAAGAAGCTTTCGAATATCACCTAACTGCACTATGGCCTCTGATCACATTGGACTaGTGGTTGCCATTTGGGGTA | + |
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Preference number: 3 (lower is better) Translates to: YIKSIKEAFEYHLTALWPLITLD*WLPFGV Trigger: TACCCCAAATGGCAACCACAAGTCCAATGTGATCAG...AGGCCATAGTGCAGTTAGGTGATATTCGAAAGCTTCTTTGATGCTCTTTATGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058714.10 |
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| 3UTR-3UTR CAA 90 bp | TACATAAAGAGCATCAAAGAAGCTTTCGAATATCACCTAACTGCACTATGGCCTTTCTTCCTGATCACATaGGACTTGTGGTTGCCATTT | + |
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Preference number: 3 (lower is better) Translates to: YIKSIKEAFEYHLTALWPFFLIT*DLWLPF Trigger: AAATGGCAACCACAAGTCCAATGTGATCAGGAAGAA...AGGCCATAGTGCAGTTAGGTGATATTCGAAAGCTTCTTTGATGCTCTTTATGTA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058714.10 |
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| 3UTR CCA 72 bp | ATCAAAGAAGCTTTCGAATATCACCTAACTGCACTATaGCCTTATCGGTCAGATGAATCAATGACAAAATGG | + |
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Preference number: 3 (lower is better) Translates to: IKEAFEYHLTAL*PYRSDESMTKW Trigger: CCATTTTGTCATTGATTCATCTGACCGATAAGGCCATAGTGCAGTTAGGTGATATTCGAAAGCTTCTTTGAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058714.10 |
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| CDS-3UTR TCA 90 bp | TCAATAGCGGCATCTCTCTTCTCTCAAACCTTTCACGCGTCCTTTAATCCCGTCGGCTGCTCTCCCAGGTaGGCCCGGACCCTGGATCTC | + |
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Preference number: 4 (lower is better) Translates to: SIAASLFSQTFHASFNPVGCSPR*ARTLDL Trigger: GAGATCCAGGGTCCGGGCTCACCTGGGAGAGCAGCC...GACGGGATTAAAGGACGCGTGAAAGGTTTGAGAGAAGAGAGATGCCGCTATTGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214476.2 |
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| CDS-3UTR CCA 90 bp | GCCAATTCGAGGTGGACCTGTTTCTTCCTGATCACATTGGACTTGTGGTTGCCACCAGGAGACCAGCTGTaGACTGCAGGGAGCTGCCAC | + |
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Preference number: 4 (lower is better) Translates to: ANSRWTCFFLITLDLWLPPGDQL*TAGSCH Trigger: GTGGCAGCTCCCTGCAGTCCACAGCTGGTCTCCTGG...TGGCAACCACAAGTCCAATGTGATCAGGAAGAAACAGGTCCACCTCGAATTGGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000058714.10 ENSMUST00000214476.2 |
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| CDS-3UTR GCA 90 bp | GCCAATTCGAGGTGGACCTGTTTCTTCCTGATCACATTGGACTTGTGGTTGCCAGGTTGCAGTAAATCCTaGCTGAGAAGGGGAAGACGA | + |
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Preference number: 4 (lower is better) Translates to: ANSRWTCFFLITLDLWLPGCSKS*LRRGRR Trigger: TCGTCTTCCCCTTCTCAGGCAGGATTTACTGCAACC...TGGCAACCACAAGTCCAATGTGATCAGGAAGAAACAGGTCCACCTCGAATTGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214476.2 |
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| CDS-3UTR CCA 90 bp | ATCTCTACATCAAACCTGTGCCCAATTTCAAGTGAGAGTTTTAAGTGTCCACATCGCGCCTCAAGCTCTTaGGCTGCTCTCCCAGGTGAG | + |
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Preference number: 4 (lower is better) Translates to: ISTSNLCPISSESFKCPHRASSS*AALPGE Trigger: CTCACCTGGGAGAGCAGCCCAAGAGCTTGAGGCGCG...ATGTGGACACTTAAAACTCTCACTTGAAATTGGGCACAGGTTTGATGTAGAGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214476.2 |
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| 3UTR CAA 72 bp | GCCAATTCGAGGTGGACCTGTTTCTTCCTGATCACATaGGACTTGTGGTTGCCATTTGGGGTAGGTGTAGAA | + |
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Preference number: 4 (lower is better) Translates to: ANSRWTCFFLIT*DLWLPFGVGVE Trigger: TTCTACACCTACCCCAAATGGCAACCACAAGTCCAATGTGATCAGGAAGAAACAGGTCCACCTCGAATTGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000058714.10 ENSMUST00000214476.2 |
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| CDS-3UTR CCA 90 bp | TCAATAGCGGCATCTCTCTTCTCTCAAACCTTTCACGCGTCCTTTAATCCCGTCGGTGGTAGCGTTACTTaGATTTGGGGAAGCAGAAAT | + |
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Preference number: 4 (lower is better) Translates to: SIAASLFSQTFHASFNPVGGSVT*IWGSRN Trigger: ATTTCTGCTTCCCCAAATCCAAGTAACGCTACCACC...GACGGGATTAAAGGACGCGTGAAAGGTTTGAGAGAAGAGAGATGCCGCTATTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000058714.10 ENSMUST00000214476.2 |
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| 3UTR CAA 72 bp | ACTTTTGAAATCAGATTTATTCAGTGGTGGCTGGACTaGGGGATGGGTTCCAATCCACCATTGCCTGGCACA | + |
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Preference number: 4 (lower is better) Translates to: TFEIRFIQWWLD*GMGSNPPLPGT Trigger: TGTGCCAGGCAATGGTGGATTGGAACCCATCCCCAAGTCCAGCCACCACTGAATAAATCTGATTTCAAAAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058714.10 |
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| CDS-3UTR TCA 90 bp | ATCTCTACATCAAACCTGTGCCCAATTTCAAGTGAGAGTTTTAAGTGTCCACATGCAGTAAATCCTGCCTaGGAAGGGGAAGACGAAGCG | + |
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Preference number: 4 (lower is better) Translates to: ISTSNLCPISSESFKCPHAVNPA*EGEDEA Trigger: CGCTTCGTCTTCCCCTTCTCAGGCAGGATTTACTGC...ATGTGGACACTTAAAACTCTCACTTGAAATTGGGCACAGGTTTGATGTAGAGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000214476.2 |
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| CDS-3UTR GCA 90 bp | TCAATAGCGGCATCTCTCTTCTCTCAAACCTTTCACGCGTCCTTTAATCCCGTCCAACAGATGTTTGGTTaGAGTAAATCTGCGTGGGTA | + |
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Preference number: 4 (lower is better) Translates to: SIAASLFSQTFHASFNPVQQMFG*SKSAWV Trigger: TACCCACGCAGATTTACTGCAACCAAACATCTGTTG...GACGGGATTAAAGGACGCGTGAAAGGTTTGAGAGAAGAGAGATGCCGCTATTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058714.10 |
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| CDS-3UTR GCA 90 bp | AATTCGAGGTGGACCTGTTTCTTCCTGATCACATTGGACTTGTGGTTGCCATTTGTTACCGGGAAACGGTaGAACAGATGTTTGGTTGCA | + |
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Preference number: 4 (lower is better) Translates to: NSRWTCFFLITLDLWLPFVTGKR*NRCLVA Trigger: TGCAACCAAACATCTGTTGCACCGTTTCCCGGTAAC...AAATGGCAACCACAAGTCCAATGTGATCAGGAAGAAACAGGTCCACCTCGAATT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000058714.10 ENSMUST00000214476.2 |
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| CDS-3UTR CCA 90 bp | TACATAAAGAGCATCAAAGAAGCTTTCGAATATCACCTAACTGCACTATGGCCTGGTGGTAGCGTTACTTaGATTTGGGGAAGCAGAAAT | + |
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Preference number: 4 (lower is better) Translates to: YIKSIKEAFEYHLTALWPGGSVT*IWGSRN Trigger: ATTTCTGCTTCCCCAAATCCAAGTAACGCTACCACC...AGGCCATAGTGCAGTTAGGTGATATTCGAAAGCTTCTTTGATGCTCTTTATGTA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058714.10 |
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| CDS-3UTR GCA 90 bp | TTCAAGGAAATCACATCAATTCTGAATGCTGTCTTCATCTTGGGATGTAAAACTGTTACCGGGAAACGGTaGAACAGATGTTTGGTTGCA | + |
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Preference number: 4 (lower is better) Translates to: FKEITSILNAVFILGCKTVTGKR*NRCLVA Trigger: TGCAACCAAACATCTGTTGCACCGTTTCCCGGTAAC...AGTTTTACATCCCAAGATGAAGACAGCATTCAGAATTGATGTGATTTCCTTGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000058714.10 ENSMUST00000214476.2 |
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| 3UTR CAA 72 bp | AAGGAAATCACATCAATTCTGAATGCTGTCTTCATCTaGGGATGTAAAACTCCAGCAGATTCAATAGCGGCA | + |
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Preference number: 4 (lower is better) Translates to: KEITSILNAVFI*GCKTPADSIAA Trigger: TGCCGCTATTGAATCTGCTGGAGTTTTACATCCCAAGATGAAGACAGCATTCAGAATTGATGTGATTTCCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000058714.10 ENSMUST00000214476.2 |
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| CDS-3UTR CCA 90 bp | TACATAAAGAGCATCAAAGAAGCTTTCGAATATCACCTAACTGCACTATGGCCTAGCGTTACTTGGATTTaGGGAAGCAGAAATATTCTG | + |
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Preference number: 4 (lower is better) Translates to: YIKSIKEAFEYHLTALWPSVTWI*GSRNIL Trigger: CAGAATATTTCTGCTTCCCCAAATCCAAGTAACGCT...AGGCCATAGTGCAGTTAGGTGATATTCGAAAGCTTCTTTGATGCTCTTTATGTA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058714.10 |
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| CDS-3UTR CCA 90 bp | ATCTCTACATCAAACCTGTGCCCAATTTCAAGTGAGAGTTTTAAGTGTCCACATAGCGTTACTTGGATTTaGGGAAGCAGAAATATTCTG | + |
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Preference number: 4 (lower is better) Translates to: ISTSNLCPISSESFKCPHSVTWI*GSRNIL Trigger: CAGAATATTTCTGCTTCCCCAAATCCAAGTAACGCT...ATGTGGACACTTAAAACTCTCACTTGAAATTGGGCACAGGTTTGATGTAGAGAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000058714.10 ENSMUST00000214476.2 |
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| CDS-3UTR GCA 90 bp | TTCAAGGAAATCACATCAATTCTGAATGCTGTCTTCATCTTGGGATGTAAAACTCAACAGATGTTTGGTTaGAGTAAATCCTGCCTGAGA | + |
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Preference number: 4 (lower is better) Translates to: FKEITSILNAVFILGCKTQQMFG*SKSCLR Trigger: TCTCAGGCAGGATTTACTGCAACCAAACATCTGTTG...AGTTTTACATCCCAAGATGAAGACAGCATTCAGAATTGATGTGATTTCCTTGAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214476.2 |
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| CDS TCA 90 bp | ACCGGGAAACGGTGCAACAGATGTTTGGTTGCAGTAAATCCTGCCTaGGAAGGGGAAGACGAAGCGCGCCTCAAGCTCTTGGGCTGCTCT | + |
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Preference number: 5 (lower is better) Translates to: TGKRCNRCLVAVNPA*EGEDEARLKLLGCS Trigger: AGAGCAGCCCAAGAGCTTGAGGCGCGCTTCGTCTTCCCCTTCTCAGGCAGGATTTACTGCAACCAAACATCTGTTGCACCGTTTCCCGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214476.2 |
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| CDS CCA 90 bp | CTGCAGGGAGCTGCCACCCCCTCTGGTGGTAGCGTTACTTGGATTTaGGGAAGCAGAAATATTCTGGTTACCGGGAAACGGTGCAACAGA | + |
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Preference number: 5 (lower is better) Translates to: LQGAATPSGGSVTWI*GSRNILVTGKRCNR Trigger: TCTGTTGCACCGTTTCCCGGTAACCAGAATATTTCTGCTTCCCCAAATCCAAGTAACGCTACCACCAGAGGGGGTGGCAGCTCCCTGCAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000058714.10 ENSMUST00000214476.2 |
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| CDS GCA 90 bp | CAGAAATATTCTGGTTACCGGGAAACGGTGCAACAGATGTTTGGTTaGAGTAAATCCTGCCTGAGAAGGGGAAGACGAAGCGCGCCTCAA | + |
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Preference number: 5 (lower is better) Translates to: QKYSGYRETVQQMFG*SKSCLRRGRRSAPQ Trigger: TTGAGGCGCGCTTCGTCTTCCCCTTCTCAGGCAGGATTTACTGCAACCAAACATCTGTTGCACCGTTTCCCGGTAACCAGAATATTTCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214476.2 |
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| CDS CCA 72 bp | CCTGAGAAGGGGAAGACGAAGCGCGCCTCAAGCTCTTaGGCTGCTCTCCCAGGTGAGCCCGGACCCTGGATC | + |
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Preference number: 6 (lower is better) Translates to: PEKGKTKRASSS*AALPGEPGPWI Trigger: GATCCAGGGTCCGGGCTCACCTGGGAGAGCAGCCCAAGAGCTTGAGGCGCGCTTCGTCTTCCCCTTCTCAGG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214476.2 |
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| CDS TCA 72 bp | CGGTGCAACAGATGTTTGGTTGCAGTAAATCCTGCCTaGGAAGGGGAAGACGAAGCGCGCCTCAAGCTCTTG | + |
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Preference number: 6 (lower is better) Translates to: RCNRCLVAVNPA*EGEDEARLKLL Trigger: CAAGAGCTTGAGGCGCGCTTCGTCTTCCCCTTCTCAGGCAGGATTTACTGCAACCAAACATCTGTTGCACCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214476.2 |
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| CDS GCA 72 bp | GAAACGGTGCAACAGATGTTTGGTTGCAGTAAATCCTaGCTGAGAAGGGGAAGACGAAGCGCGCCTCAAGCT | + |
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Preference number: 6 (lower is better) Translates to: ETVQQMFGCSKS*LRRGRRSAPQA Trigger: AGCTTGAGGCGCGCTTCGTCTTCCCCTTCTCAGGCAGGATTTACTGCAACCAAACATCTGTTGCACCGTTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214476.2 |
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| CDS GCA 72 bp | TCTGGTTACCGGGAAACGGTGCAACAGATGTTTGGTTaGAGTAAATCCTGCCTGAGAAGGGGAAGACGAAGC | + |
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Preference number: 6 (lower is better) Translates to: SGYRETVQQMFG*SKSCLRRGRRS Trigger: GCTTCGTCTTCCCCTTCTCAGGCAGGATTTACTGCAACCAAACATCTGTTGCACCGTTTCCCGGTAACCAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214476.2 |
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| CDS GCA 72 bp | TGGGGAAGCAGAAATATTCTGGTTACCGGGAAACGGTaGAACAGATGTTTGGTTGCAGTAAATCTGCGTGGG | + |
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Preference number: 6 (lower is better) Translates to: WGSRNILVTGKR*NRCLVAVNLRG Trigger: CCCACGCAGATTTACTGCAACCAAACATCTGTTGCACCGTTTCCCGGTAACCAGAATATTTCTGCTTCCCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058714.10 |
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| CDS CCA 72 bp | GTAGCGTTACTTGGATTTGGGGAAGCAGAAATATTCTaGTTACCGGGAAACGGTGCAACAGATGTTTGGTTG | + |
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Preference number: 6 (lower is better) Translates to: VALLGFGEAEIF*LPGNGATDVWL Trigger: CAACCAAACATCTGTTGCACCGTTTCCCGGTAACCAGAATATTTCTGCTTCCCCAAATCCAAGTAACGCTAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000058714.10 ENSMUST00000214476.2 |
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