RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CD22 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000030577

Ensembl transcript IDs: ENSMUST00000019248.13, ENSMUST00000108125.9, ENSMUST00000186154.7, ENSMUST00000187989.7, ENSMUST00000188157.7, ENSMUST00000189718.7, ENSMUST00000190455.2, ENSMUST00000190617.7, ENSMUST00000190646.7, ENSMUST00000190753.2, ENSMUST00000214289.2

Found 482 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GGTGGTGGGTGCCTGGGGTTGGAGAAGCAGACGTGGCACAATGCGTaGGGGAGGATCACCAGCCAGAGAAGGCCGGTCAGGTCTGGCCAG +
Preference number: 1 (lower is better)
Translates to: GGGCLGLEKQTWHNA*GRITSQRRPVRSGQ
Trigger: CTGGCCAGACCTGACCGGCCTTCTCTGGCTGGTGATCCTCCCTCACGCATTGTGCCACGTCTGCTTCTCCAACCCCAGGCACCCACCACC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
3UTR GCA 90 bp AGATGGTGGTGGGTGCCTGGGGTTGGAGAAGCAGACGTGGCACAATaGGTGAGGGAGGATCACCAGCCAGAGAAGGCCGGTCAGGTCTGG +
Preference number: 1 (lower is better)
Translates to: RWWWVPGVGEADVAQ*VREDHQPEKAGQVW
Trigger: CCAGACCTGACCGGCCTTCTCTGGCTGGTGATCCTCCCTCACGCATTGTGCCACGTCTGCTTCTCCAACCCCAGGCACCCACCACCATCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
3UTR CCA 90 bp CCAGCTGCAGTGAGGCACAGGATGGAGCAGATGGTGGTGGGTGCCTaGGGTTGGAGAAGCAGACGTGGCACAATGCGTGAGGGAGGATCA +
Preference number: 1 (lower is better)
Translates to: PAAVRHRMEQMVVGA*GWRSRRGTMREGGS
Trigger: TGATCCTCCCTCACGCATTGTGCCACGTCTGCTTCTCCAACCCCAGGCACCCACCACCATCTGCTCCATCCTGTGCCTCACTGCAGCTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
3UTR TCA 90 bp AGGACAAGGTGGCCTTCTTCCCCTCCATCACATGGTCCCCAGGGCTaGTGGACACACGCAGCCTCCGAGGAGCATACAGCACTTGGAGGT +
Preference number: 1 (lower is better)
Translates to: RTRWPSSPPSHGPQG*WTHAASEEHTALGG
Trigger: ACCTCCAAGTGCTGTATGCTCCTCGGAGGCTGCGTGTGTCCATCAGCCCTGGGGACCATGTGATGGAGGGGAAGAAGGCCACCTTGTCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000187989.7
ENSMUST00000190646.7
3UTR CCA 90 bp GCATCACTCTCACAGGACAAGGTGGCCTTCTTCCCCTCCATCACATaGTCCCCAGGGCTGATGGACACACGCAGCCTCCGAGGAGCATAC +
Preference number: 1 (lower is better)
Translates to: ASLSQDKVAFFPSIT*SPGLMDTRSLRGAY
Trigger: GTATGCTCCTCGGAGGCTGCGTGTGTCCATCAGCCCTGGGGACCATGTGATGGAGGGGAAGAAGGCCACCTTGTCCTGTGAGAGTGATGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000187989.7
ENSMUST00000190646.7
3UTR TCA 90 bp GCACGCCTGAGTCCGTGCCCAGGGAGCTGCCGGTGCCTTAGCATCTaGGCTGCAGCAGCTGAAGGAGTTGTCTTCTTTAGGCTCAAGAAC +
Preference number: 1 (lower is better)
Translates to: ARLSPCPGSCRCLSI*AAAAEGVVFFRLKN
Trigger: GTTCTTGAGCCTAAAGAAGACAACTCCTTCAGCTGCTGCAGCTCAGATGCTAAGGCACCGGCAGCTCCCTGGGCACGGACTCAGGCGTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000187989.7
ENSMUST00000189718.7
ENSMUST00000190617.7
ENSMUST00000190646.7
3UTR CCA 90 bp GGAATCCTGATGCAGGCTCCCTCCCAGGCAAAGAGGGTTTGGGGATaGTCAACGGTCCAATCATTTGCTGAGCTGTACCGAGCCGAAGCC +
Preference number: 1 (lower is better)
Translates to: GILMQAPSQAKRVWG*STVQSFAELYRAEA
Trigger: GGCTTCGGCTCGGTACAGCTCAGCAAATGATTGGACCGTTGACCATCCCCAAACCCTCTTTGCCTGGGAGGGAGCCTGCATCAGGATTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187989.7
3UTR CCA 90 bp TCCAGGGGTTCCAGTCTCAGTTTCTGGCCTGAGGAGTGGAGGTCTTaGCCACTGGAGTCAAACCAGGTGTACTGTGAGATGGGCGGATTG +
Preference number: 1 (lower is better)
Translates to: SRGSSLSFWPEEWRS*PLESNQVYCEMGGL
Trigger: CAATCCGCCCATCTCACAGTACACCTGGTTTGACTCCAGTGGCCAAGACCTCCACTCCTCAGGCCAGAAACTGAGACTGGAACCCCTGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000187989.7
ENSMUST00000190646.7
3UTR CCA 90 bp AGGCCGCTTCTGTATCACCGAGTAAGTGACCGAGTCGCTGTTGTTTaGAGGAGGAGCCTGTGTTGCTGGGGTCCCTGCATCTCCAGTGTT +
Preference number: 1 (lower is better)
Translates to: RPLLYHRVSDRVAVV*RRSLCCWGPCISSV
Trigger: AACACTGGAGATGCAGGGACCCCAGCAACACAGGCTCCTCCTCCAAACAACAGCGACTCGGTCACTTACTCGGTGATACAGAAGCGGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000187989.7
ENSMUST00000190646.7
3UTR GCA 90 bp GGGGCCGCTTACCAGCCCCAAACTGAACCAGCTCTGAGTAATGGATaGTCTCATCCTCCGGGCAGCTCGGATTCACATTCTCATAATCCC +
Preference number: 1 (lower is better)
Translates to: GAAYQPQTEPALSNG*SHPPGSSDSHSHNP
Trigger: GGGATTATGAGAATGTGAATCCGAGCTGCCCGGAGGATGAGAGCATCCATTACTCAGAGCTGGTTCAGTTTGGGGCTGGTAAGCGGCCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000187989.7
ENSMUST00000190646.7
3UTR CCA 90 bp CTTGGCCACTGGAGTCAAACCAGGTGTACTGTGAGATGGGCGGATTaGCATCACTCTCACAGGACAAGGTGGCCTTCTTCCCCTCCATCA +
Preference number: 1 (lower is better)
Translates to: LGHWSQTRCTVRWAD*HHSHRTRWPSSPPS
Trigger: TGATGGAGGGGAAGAAGGCCACCTTGTCCTGTGAGAGTGATGCCAATCCGCCCATCTCACAGTACACCTGGTTTGACTCCAGTGGCCAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000187989.7
ENSMUST00000190646.7
3UTR CCA 90 bp AGTGGAGGTCTTGGCCACTGGAGTCAAACCAGGTGTACTGTGAGATaGGCGGATTGGCATCACTCTCACAGGACAAGGTGGCCTTCTTCC +
Preference number: 1 (lower is better)
Translates to: SGGLGHWSQTRCTVR*ADWHHSHRTRWPSS
Trigger: GGAAGAAGGCCACCTTGTCCTGTGAGAGTGATGCCAATCCGCCCATCTCACAGTACACCTGGTTTGACTCCAGTGGCCAAGACCTCCACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000187989.7
ENSMUST00000190646.7
3UTR CCA 90 bp TTGCAAGGAATCCTGATGCAGGCTCCCTCCCAGGCAAAGAGGGTTTaGGGATGGTCAACGGTCCAATCATTTGCTGAGCTGTACCGAGCC +
Preference number: 1 (lower is better)
Translates to: LQGILMQAPSQAKRV*GWSTVQSFAELYRA
Trigger: GGCTCGGTACAGCTCAGCAAATGATTGGACCGTTGACCATCCCCAAACCCTCTTTGCCTGGGAGGGAGCCTGCATCAGGATTCCTTGCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187989.7
3UTR TCA 90 bp CCAGACGTGCCTTGGGTAGTGGAGTTTTGTACTTGCAAGGAATCCTaGTGCAGGCTCCCTCCCAGGCAAAGAGGGTTTGGGGATGGTCAA +
Preference number: 1 (lower is better)
Translates to: PDVPWVVEFCTCKES*CRLPPRQRGFGDGQ
Trigger: TTGACCATCCCCAAACCCTCTTTGCCTGGGAGGGAGCCTGCATCAGGATTCCTTGCAAGTACAAAACTCCACTACCCAAGGCACGTCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187989.7
3UTR TCA 90 bp AAGGGTAGATGTGAACCCTGGAGGGTTCTGGAGCATAGTGCACCGTaGGTTCCACTTCTTCCGACTCTCCTGGGCCTATGTCGTTGGAAG +
Preference number: 1 (lower is better)
Translates to: KGRCEPWRVLEHSAP*VPLLPTLLGLCRWK
Trigger: CTTCCAACGACATAGGCCCAGGAGAGTCGGAAGAAGTGGAACTCACGGTGCACTATGCTCCAGAACCCTCCAGGGTTCACATCTACCCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187989.7
3UTR GCA 90 bp CTCCGAGACATTGAGGTGAATGGGCTCCATCCATCGTTCAGTCCCTaGGGTCATCCTCAACCCCAGATTCCCACTGTCATTGGCACGTAT +
Preference number: 1 (lower is better)
Translates to: LRDIEVNGLHPSFSP*GHPQPQIPTVIGTY
Trigger: ATACGTGCCAATGACAGTGGGAATCTGGGGTTGAGGATGACCGCAGGGACTGAACGATGGATGGAGCCCATTCACCTCAATGTCTCGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187989.7
3UTR CCA 90 bp TTCTGGAGCATAGTGCACCGTGAGTTCCACTTCTTCCGACTCTCCTaGGCCTATGTCGTTGGAAGCCTGGCACCGGTATTTCCCTCTCAT +
Preference number: 1 (lower is better)
Translates to: FWSIVHREFHFFRLS*AYVVGSLAPVFPSH
Trigger: ATGAGAGGGAAATACCGGTGCCAGGCTTCCAACGACATAGGCCCAGGAGAGTCGGAAGAAGTGGAACTCACGGTGCACTATGCTCCAGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187989.7
3UTR CCA 90 bp GGAGTTGTACCTACAGACCAGGGTCACACTGTCTCCTTCCAGGATTaGTGTGAAGCTCTGAATCACTGTGGTCACCGCCTTGGGAGCATA +
Preference number: 1 (lower is better)
Translates to: GVVPTDQGHTVSFQD*CEALNHCGHRLGSI
Trigger: TATGCTCCCAAGGCGGTGACCACAGTGATTCAGAGCTTCACACCAATCCTGGAAGGAGACAGTGTGACCCTGGTCTGTAGGTACAACTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000187989.7
ENSMUST00000190455.2
ENSMUST00000190646.7
3UTR CCA 90 bp AGTTCCACTTCTTCCGACTCTCCTGGGCCTATGTCGTTGGAAGCCTaGCACCGGTATTTCCCTCTCATGTCCTTGGTCACTGAATGCAGA +
Preference number: 1 (lower is better)
Translates to: SSTSSDSPGPMSLEA*HRYFPLMSLVTECR
Trigger: TCTGCATTCAGTGACCAAGGACATGAGAGGGAAATACCGGTGCCAGGCTTCCAACGACATAGGCCCAGGAGAGTCGGAAGAAGTGGAACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187989.7
3UTR TCA 90 bp ACGCAGCCTCCGAGGAGCATACAGCACTTGGAGGTTCCAGGCCTGTaGCAAGGTCTCTCCGATGGAGTTGTTGACCATGCAGTTATAATT +
Preference number: 1 (lower is better)
Translates to: TQPPRSIQHLEVPGL*QGLSDGVVDHAVII
Trigger: AATTATAACTGCATGGTCAACAACTCCATCGGAGAGACCTTGTCACAGGCCTGGAACCTCCAAGTGCTGTATGCTCCTCGGAGGCTGCGT
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000187989.7
ENSMUST00000190646.7
3UTR CCA 90 bp TCCGATGGAGTTGTTGACCATGCAGTTATAATTTCCAGAATCTTCTaGGGAGACGGAGCCGAAGCTCAGGTACCTCCCTTCCTGCACGAG +
Preference number: 1 (lower is better)
Translates to: SDGVVDHAVIISRIF*GDGAEAQVPPFLHE
Trigger: CTCGTGCAGGAAGGGAGGTACCTGAGCTTCGGCTCCGTCTCCCCAGAAGATTCTGGAAATTATAACTGCATGGTCAACAACTCCATCGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000187989.7
ENSMUST00000190646.7
3UTR TCA 90 bp CTTGGAGGTTCCAGGCCTGTGACAAGGTCTCTCCGATGGAGTTGTTaGCCATGCAGTTATAATTTCCAGAATCTTCTGGGGAGACGGAGC +
Preference number: 1 (lower is better)
Translates to: LGGSRPVTRSLRWSC*PCSYNFQNLLGRRS
Trigger: GCTCCGTCTCCCCAGAAGATTCTGGAAATTATAACTGCATGGTCAACAACTCCATCGGAGAGACCTTGTCACAGGCCTGGAACCTCCAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000187989.7
ENSMUST00000190646.7
3UTR CCA 90 bp GTTCAGTCCATTATCATCAAGGCAGGAGGATGGCAGCATCCAGGTTaGCATGGTGCAGGAGGAGCTGAGAGTTCTACATCTTCATGTGCT +
Preference number: 1 (lower is better)
Translates to: VQSIIIKAGGWQHPG*HGAGGAESSTSSCA
Trigger: AGCACATGAAGATGTAGAACTCTCAGCTCCTCCTGCACCATGCCAACCTGGATGCTGCCATCCTCCTGCCTTGATGATAATGGACTGAAC
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019248.13
3UTR CCA 90 bp GTTCAGTCCCTGCGGTCATCCTCAACCCCAGATTCCCACTGTCATTaGCACGTATCGGGTGGATTTTCAGGGTACAATTGTCTATTCTGT +
Preference number: 1 (lower is better)
Translates to: VQSLRSSSTPDSHCH*HVSGGFSGYNCLFC
Trigger: ACAGAATAGACAATTGTACCCTGAAAATCCACCCGATACGTGCCAATGACAGTGGGAATCTGGGGTTGAGGATGACCGCAGGGACTGAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187989.7
3UTR CCA 90 bp GGTATTTCCCTCTCATGTCCTTGGTCACTGAATGCAGAATTAGCTTaGACATCTGTTGTTCCTGTTCCAGTTCCTGATCCTCTAGGGGGC +
Preference number: 1 (lower is better)
Translates to: GISLSCPWSLNAELA*TSVVPVPVPDPLGG
Trigger: GCCCCCTAGAGGATCAGGAACTGGAACAGGAACAACAGATGTCCAAGCTAATTCTGCATTCAGTGACCAAGGACATGAGAGGGAAATACC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000187989.7
3UTR TCA 90 bp AGGCCAAGCATATTCAAACCATCACAGCTCGCATGCATGAAACCCTaGGTTCAATACCAACACTGTGAGACAATGGTGCCTCTAGGGACT +
Preference number: 1 (lower is better)
Translates to: RPSIFKPSQLACMKP*VQYQHCETMVPLGT
Trigger: AGTCCCTAGAGGCACCATTGTCTCACAGTGTTGGTATTGAACTCAGGGTTTCATGCATGCGAGCTGTGATGGTTTGAATATGCTTGGCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019248.13
3UTR TCA 90 bp ATTCAGTCCACAGGTCAGAGTGACACTTTGGGATTCCCGGATTTCTaGTGGCATCTGGATGTAAGGTTGGAACGGTTTCTCCGAGACATT +
Preference number: 1 (lower is better)
Translates to: IQSTGQSDTLGFPDF*WHLDVRLERFLRDI
Trigger: AATGTCTCGGAGAAACCGTTCCAACCTTACATCCAGATGCCATCAGAAATCCGGGAATCCCAAAGTGTCACTCTGACCTGTGGACTGAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187989.7
3UTR CCA 90 bp CTATGTCGTTGGAAGCCTGGCACCGGTATTTCCCTCTCATGTCCTTaGTCACTGAATGCAGAATTAGCTTGGACATCTGTTGTTCCTGTT +
Preference number: 1 (lower is better)
Translates to: LCRWKPGTGISLSCP*SLNAELAWTSVVPV
Trigger: AACAGGAACAACAGATGTCCAAGCTAATTCTGCATTCAGTGACCAAGGACATGAGAGGGAAATACCGGTGCCAGGCTTCCAACGACATAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187989.7
3UTR GCA 90 bp AGGGTACAATTGTCTATTCTGTTCCCCAGAAATGTTACTCTCCCTTaGTTAGAAAGGTACAGCTCAGACTCTGGGTCCTTCTCAGTCTTT +
Preference number: 1 (lower is better)
Translates to: RVQLSILFPRNVTLP*LERYSSDSGSFSVF
Trigger: AAAGACTGAGAAGGACCCAGAGTCTGAGCTGTACCTTTCTAAGCAAGGGAGAGTAACATTTCTGGGGAACAGAATAGACAATTGTACCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187989.7
3UTR GCA 90 bp TTCCAGTGTGATCAATCACCAATACAAAGGAGTTCATGTGACAGCTaGGCCACTTTTAATATGAAGCACTTATTGAATTATATATGTCCA +
Preference number: 1 (lower is better)
Translates to: FQCDQSPIQRSSCDS*ATFNMKHLLNYICP
Trigger: TGGACATATATAATTCAATAAGTGCTTCATATTAAAAGTGGCGCAGCTGTCACATGAACTCCTTTGTATTGGTGATTGATCACACTGGAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019248.13
3UTR-3UTR TCA 90 bp GCTGATGGACACACGCAGCCTCCGAGGAGCATACAGCACTTGGAGGTTCCAGGCCACATCCAGCTGCAGTaGGGCACAGGATGGAGCAGA +
Preference number: 2 (lower is better)
Translates to: ADGHTQPPRSIQHLEVPGHIQLQ*GTGWSR
Trigger: TCTGCTCCATCCTGTGCCTCACTGCAGCTGGATGTG...GCCTGGAACCTCCAAGTGCTGTATGCTCCTCGGAGGCTGCGTGTGTCCATCAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190646.7
3UTR-3UTR TCA 90 bp TCATCAAGGCAGGAGGATGGCAGCATCCAGGTTGGCATGGTGCAGGAGGAGCTGCACATCCAGCTGCAGTaGGGCACAGGATGGAGCAGA +
Preference number: 2 (lower is better)
Translates to: SSRQEDGSIQVGMVQEELHIQLQ*GTGWSR
Trigger: TCTGCTCCATCCTGTGCCTCACTGCAGCTGGATGTG...CAGCTCCTCCTGCACCATGCCAACCTGGATGCTGCCATCCTCCTGCCTTGATGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019248.13
3UTR-3UTR TCA 90 bp ATGGAGCAGATGGTGGTGGGTGCCTGGGGTTGGAGAAGCAGACGTGGCACAATGCACATCCAGCTGCAGTaGGGCACAGGATGGAGCAGA +
Preference number: 2 (lower is better)
Translates to: MEQMVVGAWGWRSRRGTMHIQLQ*GTGWSR
Trigger: TCTGCTCCATCCTGTGCCTCACTGCAGCTGGATGTG...CATTGTGCCACGTCTGCTTCTCCAACCCCAGGCACCCACCACCATCTGCTCCAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
3UTR-3UTR TCA 90 bp TCAGGCAGAAGCCTAGTCCCAAGGCGACCCGCTTGCCGATGGTCTCTGGACTGTTCCCATGTCACTTTCTaGATCCTCAGCACTCCGGGT +
Preference number: 2 (lower is better)
Translates to: SGRSLVPRRPACRWSLDCSHVTF*ILSTPG
Trigger: ACCCGGAGTGCTGAGGATTCAGAAAGTGACATGGGA...ACAGTCCAGAGACCATCGGCAAGCGGGTCGCCTTGGGACTAGGCTTCTGCCTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000187989.7
ENSMUST00000190646.7
3UTR-3UTR TCA 90 bp ATGACAGGGAGGGCCCACGAACACTTGTGGTTGCAGGCAGCACAGCTGACAGGCGTTTCTCCGAGACATTaGGGTGAATGGGCTCCATCC +
Preference number: 2 (lower is better)
Translates to: MTGRAHEHLWLQAAQLTGVSPRH*GEWAPS
Trigger: GGATGGAGCCCATTCACCTCAATGTCTCGGAGAAAC...GCCTGTCAGCTGTGCTGCCTGCAACCACAAGTGTTCGTGGGCCCTCCCTGTCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187989.7
3UTR-3UTR GCA 90 bp TATGTCCATTCCGTTCTGTCTGCTCAGCGTCCAGGACCCCCGAGGGAAGGCACCGCCAACTGGGGACAGTaGCTCTTGCTTCCTTACTTC +
Preference number: 2 (lower is better)
Translates to: YVHSVLSAQRPGPPREGTANWGQ*LLLPYF
Trigger: GAAGTAAGGAAGCAAGAGGCACTGTCCCCAGTTGGC...GGTGCCTTCCCTCGGGGGTCCTGGACGCTGAGCAGACAGAACGGAATGGACATA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
3UTR-3UTR TCA 90 bp TCCAGGACCCCCGAGGGAAGGCACCATCTCCACAGAAGGTCCAACATCTTTGTACGGTGCCTTAGCATCTaGGCTGCAGCAGCTGAAGGA +
Preference number: 2 (lower is better)
Translates to: SRTPEGRHHLHRRSNIFVRCLSI*AAAAEG
Trigger: TCCTTCAGCTGCTGCAGCTCAGATGCTAAGGCACCG...TACAAAGATGTTGGACCTTCTGTGGAGATGGTGCCTTCCCTCGGGGGTCCTGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
3UTR-3UTR TCA 90 bp CAGGATGGAGCAGATGGTGGTGGGTGCCTGGGGTTGGAGAAGCAGACGTGGCACAATACAGGGTTTCCTTaGAAAACCCTGGCTGTCCTG +
Preference number: 2 (lower is better)
Translates to: QDGADGGGCLGLEKQTWHNTGFP*KTLAVL
Trigger: CAGGACAGCCAGGGTTTTTCAAGGAAACCCTGTATT...GTGCCACGTCTGCTTCTCCAACCCCAGGCACCCACCACCATCTGCTCCATCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
3UTR-3UTR TCA 90 bp CCTTTGCCTGGGGCCGCTTACCAGCCCCAAACTGAACCAGCTCTGAGTAATGGAGACTGTAGTAGACAGTaGGGGTGCTGGGTGGTGACT +
Preference number: 2 (lower is better)
Translates to: PLPGAAYQPQTEPALSNGDCSRQ*GCWVVT
Trigger: AGTCACCACCCAGCACCCTCACTGTCTACTACAGTC...TCCATTACTCAGAGCTGGTTCAGTTTGGGGCTGGTAAGCGGCCCCAGGCAAAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000187989.7
ENSMUST00000190646.7
3UTR-3UTR CCA 90 bp CATCCATTGCCGGATTGTAGCATCCCTGGGATTGGGGGCCTTCTGAGAGAGGGGTCTCACAGGACAAGGTaGCCTTCTTCCCCTCCATCA +
Preference number: 2 (lower is better)
Translates to: HPLPDCSIPGIGGLLREGSHRTR*PSSPPS
Trigger: TGATGGAGGGGAAGAAGGCCACCTTGTCCTGTGAGA...CCCCTCTCTCAGAAGGCCCCCAATCCCAGGGATGCTACAATCCGGCAATGGATG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000187989.7
ENSMUST00000190646.7
3UTR-3UTR CCA 90 bp GGAGGTCTTGGCCACTGGAGTCAAACCAGGTGTACTGTGAGATGGGCGGATTGGGCTCTGAGAGCACTTTaGAGGAGTGCTGGACTTGGC +
Preference number: 2 (lower is better)
Translates to: GGLGHWSQTRCTVRWADWALRAL*RSAGLG
Trigger: GCCAAGTCCAGCACTCCTCCAAAGTGCTCTCAGAGC...CCAATCCGCCCATCTCACAGTACACCTGGTTTGACTCCAGTGGCCAAGACCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187989.7
3UTR CAA 90 bp TGCACCGTGAGTTCCACTTCTTCCGACTCTCCTGGGCCTATGTCGTaGGAAGCCTGGCACCGGTATTTCCCTCTCATGTCCTTGGTCACT +
Preference number: 2 (lower is better)
Translates to: CTVSSTSSDSPGPMS*EAWHRYFPLMSLVT
Trigger: AGTGACCAAGGACATGAGAGGGAAATACCGGTGCCAGGCTTCCAACGACATAGGCCCAGGAGAGTCGGAAGAAGTGGAACTCACGGTGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187989.7
3UTR-3UTR TCA 90 bp TCCTTACTTCTGTCCTTCCTGGGGATTTCTCCCCAGGGCCAGAAAGTGGGTAGTCGGTGCCTTAGCATCTaGGCTGCAGCAGCTGAAGGA +
Preference number: 2 (lower is better)
Translates to: SLLLSFLGISPQGQKVGSRCLSI*AAAAEG
Trigger: TCCTTCAGCTGCTGCAGCTCAGATGCTAAGGCACCG...ACTACCCACTTTCTGGCCCTGGGGAGAAATCCCCAGGAAGGACAGAAGTAAGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
3UTR-3UTR GCA 90 bp CCATGTCACTTTCTGAATCCTCAGCACTCCGGGTTTGAGCACACTCCCAGAACCCCATCGTTCAGTCCCTaGGGTCATCCTCAACCCCAG +
Preference number: 2 (lower is better)
Translates to: PCHFLNPQHSGFEHTPRTPSFSP*GHPQPQ
Trigger: CTGGGGTTGAGGATGACCGCAGGGACTGAACGATGG...GGTTCTGGGAGTGTGCTCAAACCCGGAGTGCTGAGGATTCAGAAAGTGACATGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187989.7
3UTR-3UTR CCA 90 bp AGTCAAACCAGGTGTACTGTGAGATGGGCGGATTGGCATCACTCTCACAGGACAGTGGGTGCCTGGGGTTaGAGAAGCAGACGTGGCACA +
Preference number: 2 (lower is better)
Translates to: SQTRCTVRWADWHHSHRTVGAWG*RSRRGT
Trigger: TGTGCCACGTCTGCTTCTCCAACCCCAGGCACCCAC...TGTCCTGTGAGAGTGATGCCAATCCGCCCATCTCACAGTACACCTGGTTTGACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190646.7
3UTR-3UTR CCA 90 bp TCCTTACTTCTGTCCTTCCTGGGGATTTCTCCCCAGGGCCAGAAAGTGGGTAGTTGGAGCAGATGGTGGTaGGTGCCTGGGGTTGGAGAA +
Preference number: 2 (lower is better)
Translates to: SLLLSFLGISPQGQKVGSWSRWW*VPGVGE
Trigger: TTCTCCAACCCCAGGCACCCACCACCATCTGCTCCA...ACTACCCACTTTCTGGCCCTGGGGAGAAATCCCCAGGAAGGACAGAAGTAAGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
3UTR-3UTR CCA 90 bp TCCTTACTTCTGTCCTTCCTGGGGATTTCTCCCCAGGGCCAGAAAGTGGGTAGTACAGGATGGAGCAGATaGTGGTGGGTGCCTGGGGTT +
Preference number: 2 (lower is better)
Translates to: SLLLSFLGISPQGQKVGSTGWSR*WWVPGV
Trigger: AACCCCAGGCACCCACCACCATCTGCTCCATCCTGT...ACTACCCACTTTCTGGCCCTGGGGAGAAATCCCCAGGAAGGACAGAAGTAAGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
3UTR-3UTR CCA 90 bp TATGTCCATTCCGTTCTGTCTGCTCAGCGTCCAGGACCCCCGAGGGAAGGCACCCCCAGGGCCAGAAAGTaGGTAGTAAGATTAGTGAAC +
Preference number: 2 (lower is better)
Translates to: YVHSVLSAQRPGPPREGTPRARK*VVRLVN
Trigger: GTTCACTAATCTTACTACCCACTTTCTGGCCCTGGG...GGTGCCTTCCCTCGGGGGTCCTGGACGCTGAGCAGACAGAACGGAATGGACATA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
3UTR-3UTR CCA 90 bp ATGGAGCAGATGGTGGTGGGTGCCTGGGGTTGGAGAAGCAGACGTGGCACAATGCTGCTAGGAGAAAACTaGCTAAAGCCCATGCCCACA +
Preference number: 2 (lower is better)
Translates to: MEQMVVGAWGWRSRRGTMLLGEN*LKPMPT
Trigger: TGTGGGCATGGGCTTTAGCCAGTTTTCTCCTAGCAG...CATTGTGCCACGTCTGCTTCTCCAACCCCAGGCACCCACCACCATCTGCTCCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019248.13
3UTR-3UTR CCA 90 bp GGCACAGGATGGAGCAGATGGTGGTGGGTGCCTGGGGTTGGAGAAGCAGACGTGTTGTTGCACTTGGACTaGCCAGTGACTCACAAATCA +
Preference number: 2 (lower is better)
Translates to: GTGWSRWWWVPGVGEADVLLHLD*PVTHKS
Trigger: TGATTTGTGAGTCACTGGCCAGTCCAAGTGCAACAA...CACGTCTGCTTCTCCAACCCCAGGCACCCACCACCATCTGCTCCATCCTGTGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190646.7
3UTR-3UTR CCA 90 bp GGATGGAGCAGATGGTGGTGGGTGCCTGGGGTTGGAGAAGCAGACGTGGCACAAGTCTCCTTCCAGGATTaGTGTGAAGCTCTGAATCAC +
Preference number: 2 (lower is better)
Translates to: GWSRWWWVPGVGEADVAQVSFQD*CEALNH
Trigger: GTGATTCAGAGCTTCACACCAATCCTGGAAGGAGAC...TTGTGCCACGTCTGCTTCTCCAACCCCAGGCACCCACCACCATCTGCTCCATCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190646.7
3UTR-3UTR CCA 90 bp GGAGGTCTTGGCCACTGGAGTCAAACCAGGTGTACTGTGAGATGGGCGGATTGGCAGGCAAAGAGGGTTTaGGGATGGTCAACGGTCCAA +
Preference number: 2 (lower is better)
Translates to: GGLGHWSQTRCTVRWADWQAKRV*GWSTVQ
Trigger: TTGGACCGTTGACCATCCCCAAACCCTCTTTGCCTG...CCAATCCGCCCATCTCACAGTACACCTGGTTTGACTCCAGTGGCCAAGACCTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187989.7
3UTR-3UTR CCA 90 bp GCTGATGGACACACGCAGCCTCCGAGGAGCATACAGCACTTGGAGGTTCCAGGCTGTCCAGACGTGCCTTaGGTAGTGGAGTTTTGTACT +
Preference number: 2 (lower is better)
Translates to: ADGHTQPPRSIQHLEVPGCPDVP*VVEFCT
Trigger: AGTACAAAACTCCACTACCCAAGGCACGTCTGGACA...GCCTGGAACCTCCAAGTGCTGTATGCTCCTCGGAGGCTGCGTGTGTCCATCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187989.7
3UTR-3UTR CCA 90 bp CCCAGGGCTGATGGACACACGCAGCCTCCGAGGAGCATACAGCACTTGGAGGTTGTACAGCTCAGACTCTaGGTCCTTCTCAGTCTTTGT +
Preference number: 2 (lower is better)
Translates to: PRADGHTQPPRSIQHLEVVQLRL*VLLSLC
Trigger: ACAAAGACTGAGAAGGACCCAGAGTCTGAGCTGTAC...AACCTCCAAGTGCTGTATGCTCCTCGGAGGCTGCGTGTGTCCATCAGCCCTGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187989.7
3UTR CAA 90 bp GGGGTATACTTAACATCCAGACGCACAGTGCGCTCTGAGAGCACTTaGGAGGAGTGCTGGACTTGGCACTTCACACTCTTTCCGTGGTCC +
Preference number: 2 (lower is better)
Translates to: GVYLTSRRTVRSEST*EECWTWHFTLFPWS
Trigger: GGACCACGGAAAGAGTGTGAAGTGCCAAGTCCAGCACTCCTCCAAAGTGCTCTCAGAGCGCACTGTGCGTCTGGATGTTAAGTATACCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187989.7
3UTR-3UTR TCA 90 bp TCATCAAGGCAGGAGGATGGCAGCATCCAGGTTGGCATGGTGCAGGAGGAGCTGAATACAGGGTTTCCTTaGAAAACCCTGGCTGTCCTG +
Preference number: 2 (lower is better)
Translates to: SSRQEDGSIQVGMVQEELNTGFP*KTLAVL
Trigger: CAGGACAGCCAGGGTTTTTCAAGGAAACCCTGTATT...CAGCTCCTCCTGCACCATGCCAACCTGGATGCTGCCATCCTCCTGCCTTGATGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019248.13
3UTR-3UTR TCA 90 bp GTGGACATTCAGGATGACAGGGAGGGCCCACGAACACTTGTGGTTGCAGGCAGCAATACAGGGTTTCCTTaGAAAACCCTGGCTGTCCTG +
Preference number: 2 (lower is better)
Translates to: VDIQDDREGPRTLVVAGSNTGFP*KTLAVL
Trigger: CAGGACAGCCAGGGTTTTTCAAGGAAACCCTGTATT...GCTGCCTGCAACCACAAGTGTTCGTGGGCCCTCCCTGTCATCCTGAATGTCCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000187989.7
ENSMUST00000190646.7
3UTR-3UTR TCA 90 bp CAGATAGTCAGGCAGAAGCCTAGTCCCAAGGCGACCCGCTTGCCGATGGTCTCTAATACAGGGTTTCCTTaGAAAACCCTGGCTGTCCTG +
Preference number: 2 (lower is better)
Translates to: QIVRQKPSPKATRLPMVSNTGFP*KTLAVL
Trigger: CAGGACAGCCAGGGTTTTTCAAGGAAACCCTGTATT...AGAGACCATCGGCAAGCGGGTCGCCTTGGGACTAGGCTTCTGCCTGACTATCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000187989.7
ENSMUST00000190646.7
3UTR-3UTR CCA 90 bp TTCTGTCCTTCCTGGGGATTTCTCCCCAGGGCCAGAAAGTGGGTAGTAAGATTAGTGGGTGCCTGGGGTTaGAGAAGCAGACGTGGCACA +
Preference number: 2 (lower is better)
Translates to: FCPSWGFLPRARKWVVRLVGAWG*RSRRGT
Trigger: TGTGCCACGTCTGCTTCTCCAACCCCAGGCACCCAC...TAATCTTACTACCCACTTTCTGGCCCTGGGGAGAAATCCCCAGGAAGGACAGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
3UTR-3UTR CCA 90 bp ATTCAGGATGACAGGGAGGGCCCACGAACACTTGTGGTTGCAGGCAGCACAGCTATGCGGAGCTTCTCTTaGGTGTCTCCAGGTATAGGT +
Preference number: 2 (lower is better)
Translates to: IQDDREGPRTLVVAGSTAMRSFS*VSPGIG
Trigger: ACCTATACCTGGAGACACCCAAGAGAAGCTCCGCAT...AGCTGTGCTGCCTGCAACCACAAGTGTTCGTGGGCCCTCCCTGTCATCCTGAAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000187989.7
ENSMUST00000190646.7
3UTR-3UTR CCA 90 bp CACATAGTCTACGTCTTCCTTTGCCTGGGGCCGCTTACCAGCCCCAAACTGAACAGCTCTGAATCACTGTaGTCACCGCCTTGGGAGCAT +
Preference number: 2 (lower is better)
Translates to: HIVYVFLCLGPLTSPKLNSSESL*SPPWEH
Trigger: ATGCTCCCAAGGCGGTGACCACAGTGATTCAGAGCT...GTTCAGTTTGGGGCTGGTAAGCGGCCCCAGGCAAAGGAAGACGTAGACTATGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000187989.7
ENSMUST00000190646.7
3UTR CAA 90 bp AGGAGGATGTTGTCCAGACGTGCCTTGGGTAGTGGAGTTTTGTACTaGCAAGGAATCCTGATGCAGGCTCCCTCCCAGGCAAAGAGGGTT +
Preference number: 2 (lower is better)
Translates to: RRMLSRRALGSGVLY*QGILMQAPSQAKRV
Trigger: AACCCTCTTTGCCTGGGAGGGAGCCTGCATCAGGATTCCTTGCAAGTACAAAACTCCACTACCCAAGGCACGTCTGGACAACATCCTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187989.7
3UTR CAA 90 bp CGCCCATCCTTGAACCAAGACACCGCCACGGTCCTGAGTTTCGGGTaGCTGCTGTTAACCCGGCATGTCATGGTCACAGAATTGTTCTTT +
Preference number: 2 (lower is better)
Translates to: RPSLNQDTATVLSFG*LLLTRHVMVTELFF
Trigger: AAAGAACAATTCTGTGACCATGACATGCCGGGTTAACAGCAGCAACCCGAAACTCAGGACCGTGGCGGTGTCTTGGTTCAAGGATGGGCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187989.7
3UTR-3UTR TCA 90 bp TTCTTTAGGCTCAAGAACCTGAAACAGCAGCTGCTACCCACCTCAGTGCTTGAGAGTGGACATTCAGGATaGCAGGGAGGGCCCACGAAC +
Preference number: 2 (lower is better)
Translates to: FFRLKNLKQQLLPTSVLESGHSG*QGGPTN
Trigger: GTTCGTGGGCCCTCCCTGTCATCCTGAATGTCCACT...CTCAAGCACTGAGGTGGGTAGCAGCTGCTGTTTCAGGTTCTTGAGCCTAAAGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000187989.7
ENSMUST00000190646.7
3UTR-3UTR TCA 90 bp TTCTGGATTTTCATCCCCCAGATGGCCAGGATGCAGATAGTCAGGCAGAAGCCTGACTGTAGTAGACAGTaGGGGTGCTGGGTGGTGACT +
Preference number: 2 (lower is better)
Translates to: FWIFIPQMARMQIVRQKPDCSRQ*GCWVVT
Trigger: AGTCACCACCCAGCACCCTCACTGTCTACTACAGTC...AGGCTTCTGCCTGACTATCTGCATCCTGGCCATCTGGGGGATGAAAATCCAGAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000187989.7
ENSMUST00000190646.7
3UTR-3UTR GCA 90 bp CACATAGTCTACGTCTTCCTTTGCCTGGGGCCGCTTACCAGCCCCAAACTGAACACCCAGACGGTTCTCTaGCAAGCAAGAGTAATTCCC +
Preference number: 2 (lower is better)
Translates to: HIVYVFLCLGPLTSPKLNTQTVL*QARVIP
Trigger: GGGAATTACTCTTGCTTGGCAGAGAACCGTCTGGGT...GTTCAGTTTGGGGCTGGTAAGCGGCCCCAGGCAAAGGAAGACGTAGACTATGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000187989.7
ENSMUST00000190646.7
3UTR-3UTR GCA 90 bp GCAGCTGAAGGAGTTGTCTTCTTTAGGCTCAAGAACCTGAAACAGCAGCTGCTAAGGAGGAGCCTGTGTTaGTGGGGTCCCTGCATCTCC +
Preference number: 2 (lower is better)
Translates to: AAEGVVFFRLKNLKQQLLRRSLC*WGPCIS
Trigger: GGAGATGCAGGGACCCCAGCAACACAGGCTCCTCCT...TAGCAGCTGCTGTTTCAGGTTCTTGAGCCTAAAGAAGACAACTCCTTCAGCTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000187989.7
ENSMUST00000190646.7
3UTR-3UTR CCA 90 bp GCAGCTGAAGGAGTTGTCTTCTTTAGGCTCAAGAACCTGAAACAGCAGCTGCTAGTGGGTGCCTGGGGTTaGAGAAGCAGACGTGGCACA +
Preference number: 2 (lower is better)
Translates to: AAEGVVFFRLKNLKQQLLVGAWG*RSRRGT
Trigger: TGTGCCACGTCTGCTTCTCCAACCCCAGGCACCCAC...TAGCAGCTGCTGTTTCAGGTTCTTGAGCCTAAAGAAGACAACTCCTTCAGCTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
3UTR-3UTR CCA 90 bp AGTGTTAGTGACGATTACAACAGGAACACATCCAGCTGCAGTGAGGCACAGGATGTGGGTGCCTGGGGTTaGAGAAGCAGACGTGGCACA +
Preference number: 2 (lower is better)
Translates to: SVSDDYNRNTSSCSEAQDVGAWG*RSRRGT
Trigger: TGTGCCACGTCTGCTTCTCCAACCCCAGGCACCCAC...ATCCTGTGCCTCACTGCAGCTGGATGTGTTCCTGTTGTAATCGTCACTAACACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
3UTR-3UTR CCA 90 bp CCTTTGCCTGGGGCCGCTTACCAGCCCCAAACTGAACCAGCTCTGAGTAATGGAGTCTCCTTCCAGGATTaGTGTGAAGCTCTGAATCAC +
Preference number: 2 (lower is better)
Translates to: PLPGAAYQPQTEPALSNGVSFQD*CEALNH
Trigger: GTGATTCAGAGCTTCACACCAATCCTGGAAGGAGAC...TCCATTACTCAGAGCTGGTTCAGTTTGGGGCTGGTAAGCGGCCCCAGGCAAAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000187989.7
ENSMUST00000190646.7
3UTR-3UTR CCA 90 bp GAGCACACTCCCAGAACCTTGAGGGTTCCATCTGTAGGAGGTGACGTCTGGATTTCCAGTCTCAGTTTCTaGCCTGAGGAGTGGAGGTCT +
Preference number: 2 (lower is better)
Translates to: EHTPRTLRVPSVGGDVWISSLSF*PEEWRS
Trigger: AGACCTCCACTCCTCAGGCCAGAAACTGAGACTGGA...AATCCAGACGTCACCTCCTACAGATGGAACCCTCAAGGTTCTGGGAGTGTGCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000187989.7
ENSMUST00000190646.7
3UTR-3UTR TCA 90 bp GGGTTGCTGCTGTTAACCCGGCATGTCATGGTCACAGAATTGTTCTTTTCCACCGTCCACAGGTCAGAGTaGCACTTTGGGATTCCCGGA +
Preference number: 2 (lower is better)
Translates to: GLLLLTRHVMVTELFFSTVHRSE*HFGIPG
Trigger: TCCGGGAATCCCAAAGTGTCACTCTGACCTGTGGAC...GGTGGAAAAGAACAATTCTGTGACCATGACATGCCGGGTTAACAGCAGCAACCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187989.7
3UTR-3UTR CCA 90 bp GCAGTTATAATTTCCAGAATCTTCTGGGGAGACGGAGCCGAAGCTCAGGTACCTGAGGAGTGGAGGTCTTaGCCACTGGAGTCAAACCAG +
Preference number: 2 (lower is better)
Translates to: AVIISRIFWGDGAEAQVPEEWRS*PLESNQ
Trigger: CTGGTTTGACTCCAGTGGCCAAGACCTCCACTCCTC...AGGTACCTGAGCTTCGGCTCCGTCTCCCCAGAAGATTCTGGAAATTATAACTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000187989.7
ENSMUST00000190646.7
3UTR-3UTR CCA 90 bp TCCAGTGTTGTGCGTGTCACTCTCTGGAAAGCGCAAGATGGCATAACTAACGGTGAGGAGTGGAGGTCTTaGCCACTGGAGTCAAACCAG +
Preference number: 2 (lower is better)
Translates to: SSVVRVTLWKAQDGITNGEEWRS*PLESNQ
Trigger: CTGGTTTGACTCCAGTGGCCAAGACCTCCACTCCTC...ACCGTTAGTTATGCCATCTTGCGCTTTCCAGAGAGTGACACGCACAACACTGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000187989.7
ENSMUST00000190646.7
3UTR-3UTR CCA 90 bp GAGCACACTCCCAGAACCTTGAGGGTTCCATCTGTAGGAGGTGACGTCTGGATTCTTGCCGATGGTCTCTaGACTGTAGTAGACAGTGAG +
Preference number: 2 (lower is better)
Translates to: EHTPRTLRVPSVGGDVWILADGL*TVVDSE
Trigger: CTCACTGTCTACTACAGTCCAGAGACCATCGGCAAG...AATCCAGACGTCACCTCCTACAGATGGAACCCTCAAGGTTCTGGGAGTGTGCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000187989.7
ENSMUST00000190646.7
3UTR-3UTR CCA 90 bp TCTGGCCTGAGGAGTGGAGGTCTTGGCCACTGGAGTCAAACCAGGTGTACTGTGGTCAGAGTGACACTTTaGGATTCCCGGATTTCTGAT +
Preference number: 2 (lower is better)
Translates to: SGLRSGGLGHWSQTRCTVVRVTL*DSRISD
Trigger: ATCAGAAATCCGGGAATCCCAAAGTGTCACTCTGAC...CACAGTACACCTGGTTTGACTCCAGTGGCCAAGACCTCCACTCCTCAGGCCAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187989.7
3UTR-3UTR TCA 90 bp CTGTCCTTCCTGGGGATTTCTCCCCAGGGCCAGAAAGTGGGTAGTAAGATTAGTTTAGGCTCAAGAACCTaGAACAGCAGCTGCTACCCA +
Preference number: 2 (lower is better)
Translates to: LSFLGISPQGQKVGSKISLGSRT*NSSCYP
Trigger: TGGGTAGCAGCTGCTGTTTCAGGTTCTTGAGCCTAA...ACTAATCTTACTACCCACTTTCTGGCCCTGGGGAGAAATCCCCAGGAAGGACAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
3UTR-3UTR TCA 90 bp GGATTTCTCCCCAGGGCCAGAAAGTGGGTAGTAAGATTAGTGAACGGGGTAGAGTTAGGCTCAAGAACCTaGAACAGCAGCTGCTACCCA +
Preference number: 2 (lower is better)
Translates to: GFLPRARKWVVRLVNGVELGSRT*NSSCYP
Trigger: TGGGTAGCAGCTGCTGTTTCAGGTTCTTGAGCCTAA...CTCTACCCCGTTCACTAATCTTACTACCCACTTTCTGGCCCTGGGGAGAAATCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
3UTR-3UTR TCA 90 bp CTTTGTAGAAGAAAAGCCAACTGGGGACAGTGCCTCTTGCTTCCTTACTTCTGTCGGTGCCTTAGCATCTaGGCTGCAGCAGCTGAAGGA +
Preference number: 2 (lower is better)
Translates to: LCRRKANWGQCLLLPYFCRCLSI*AAAAEG
Trigger: TCCTTCAGCTGCTGCAGCTCAGATGCTAAGGCACCG...ACAGAAGTAAGGAAGCAAGAGGCACTGTCCCCAGTTGGCTTTTCTTCTACAAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
3UTR-3UTR TCA 90 bp CTTATTGAATTATATATGTCCATTCCGTTCTGTCTGCTCAGCGTCCAGGACCCCCGGTGCCTTAGCATCTaGGCTGCAGCAGCTGAAGGA +
Preference number: 2 (lower is better)
Translates to: LIELYMSIPFCLLSVQDPRCLSI*AAAAEG
Trigger: TCCTTCAGCTGCTGCAGCTCAGATGCTAAGGCACCG...GGGGTCCTGGACGCTGAGCAGACAGAACGGAATGGACATATATAATTCAATAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
3UTR-3UTR TCA 90 bp CTTATTGAATTATATATGTCCATTCCGTTCTGTCTGCTCAGCGTCCAGGACCCCCACATCCAGCTGCAGTaGGGCACAGGATGGAGCAGA +
Preference number: 2 (lower is better)
Translates to: LIELYMSIPFCLLSVQDPHIQLQ*GTGWSR
Trigger: TCTGCTCCATCCTGTGCCTCACTGCAGCTGGATGTG...GGGGTCCTGGACGCTGAGCAGACAGAACGGAATGGACATATATAATTCAATAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
3UTR-3UTR TCA 90 bp TTCTGTCCTTCCTGGGGATTTCTCCCCAGGGCCAGAAAGTGGGTAGTAAGATTATCCCATGTCACTTTCTaGATCCTCAGCACTCCGGGT +
Preference number: 2 (lower is better)
Translates to: FCPSWGFLPRARKWVVRLSHVTF*ILSTPG
Trigger: ACCCGGAGTGCTGAGGATTCAGAAAGTGACATGGGA...TAATCTTACTACCCACTTTCTGGCCCTGGGGAGAAATCCCCAGGAAGGACAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000190646.7
3UTR-3UTR GCA 90 bp ACTTTAGGGATGCGGAGCTTCTCTTGGGTGTCTCCAGGTATAGGTTTCCTGTTGAGGTACCTCCCTTCCTaGACGAGACTCCCATTCTTC +
Preference number: 2 (lower is better)
Translates to: TLGMRSFSWVSPGIGFLLRYLPS*TRLPFF
Trigger: GAAGAATGGGAGTCTCGTGCAGGAAGGGAGGTACCT...CAACAGGAAACCTATACCTGGAGACACCCAAGAGAAGCTCCGCATCCCTAAAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000187989.7
ENSMUST00000190646.7
3UTR-3UTR CCA 90 bp GACCCCCGAGGGAAGGCACCATCTCCACAGAAGGTCCAACATCTTTGTAGAAGACCCAGGGCCAGAAAGTaGGTAGTAAGATTAGTGAAC +
Preference number: 2 (lower is better)
Translates to: DPRGKAPSPQKVQHLCRRPRARK*VVRLVN
Trigger: GTTCACTAATCTTACTACCCACTTTCTGGCCCTGGG...TCTTCTACAAAGATGTTGGACCTTCTGTGGAGATGGTGCCTTCCCTCGGGGGTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
3UTR-3UTR CCA 90 bp TTCTGGATTTTCATCCCCCAGATGGCCAGGATGCAGATAGTCAGGCAGAAGCCTACTTTGGAGGAGTGCTaGACTTGGCACTTCACACTC +
Preference number: 2 (lower is better)
Translates to: FWIFIPQMARMQIVRQKPTLEEC*TWHFTL
Trigger: GAGTGTGAAGTGCCAAGTCCAGCACTCCTCCAAAGT...AGGCTTCTGCCTGACTATCTGCATCCTGGCCATCTGGGGGATGAAAATCCAGAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000187989.7
3UTR-3UTR TCA 90 bp ACTTTAGGGATGCGGAGCTTCTCTTGGGTGTCTCCAGGTATAGGTTTCCTGTTGTTAGGCTCAAGAACCTaGAACAGCAGCTGCTACCCA +
Preference number: 2 (lower is better)
Translates to: TLGMRSFSWVSPGIGFLLLGSRT*NSSCYP
Trigger: TGGGTAGCAGCTGCTGTTTCAGGTTCTTGAGCCTAA...CAACAGGAAACCTATACCTGGAGACACCCAAGAGAAGCTCCGCATCCCTAAAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000187989.7
ENSMUST00000190646.7
3UTR-3UTR CCA 90 bp CTTATTGAATTATATATGTCCATTCCGTTCTGTCTGCTCAGCGTCCAGGACCCCTACTTCTGTCCTTCCTaGGGATTTCTCCCCAGGGCC +
Preference number: 2 (lower is better)
Translates to: LIELYMSIPFCLLSVQDPYFCPS*GFLPRA
Trigger: GGCCCTGGGGAGAAATCCCCAGGAAGGACAGAAGTA...GGGGTCCTGGACGCTGAGCAGACAGAACGGAATGGACATATATAATTCAATAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
3UTR-3UTR CCA 90 bp GGGTTGCTGCTGTTAACCCGGCATGTCATGGTCACAGAATTGTTCTTTTCCACCATGCGGAGCTTCTCTTaGGTGTCTCCAGGTATAGGT +
Preference number: 2 (lower is better)
Translates to: GLLLLTRHVMVTELFFSTMRSFS*VSPGIG
Trigger: ACCTATACCTGGAGACACCCAAGAGAAGCTCCGCAT...GGTGGAAAAGAACAATTCTGTGACCATGACATGCCGGGTTAACAGCAGCAACCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187989.7
3UTR CAA 90 bp GAAAGGTACAGCTCAGACTCTGGGTCCTTCTCAGTCTTTGTGGCGTaGTACAGGACAGTTCCTGTGAATTTCTTGGTGGCCTTGTCAAAC +
Preference number: 2 (lower is better)
Translates to: ERYSSDSGSFSVFVA*YRTVPVNFLVALSN
Trigger: GTTTGACAAGGCCACCAAGAAATTCACAGGAACTGTCCTGTACAACGCCACAAAGACTGAGAAGGACCCAGAGTCTGAGCTGTACCTTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187989.7
3UTR CAA 90 bp CTGGACTTGGCACTTCACACTCTTTCCGTGGTCCGTCCACTTTGGTaGGAAGGTGAGCTTGCTCTCTGTATAGACATTCTTAATGGAGGA +
Preference number: 2 (lower is better)
Translates to: LDLALHTLSVVRPLW*EGELALCIDILNGG
Trigger: TCCTCCATTAAGAATGTCTATACAGAGAGCAAGCTCACCTTCCAACCAAAGTGGACGGACCACGGAAAGAGTGTGAAGTGCCAAGTCCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187989.7
3UTR CAA 90 bp CGGCATGTCATGGTCACAGAATTGTTCTTTTCCACCTCTGTGGGATaGACCTTGATCTCCAGCTTCGGGGTATACTTAACATCCAGACGC +
Preference number: 2 (lower is better)
Translates to: RHVMVTELFFSTSVG*TLISSFGVYLTSRR
Trigger: GCGTCTGGATGTTAAGTATACCCCGAAGCTGGAGATCAAGGTCAATCCCACAGAGGTGGAAAAGAACAATTCTGTGACCATGACATGCCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187989.7
3UTR CAA 90 bp AGTTTCGGGTTGCTGCTGTTAACCCGGCATGTCATGGTCACAGAATaGTTCTTTTCCACCTCTGTGGGATTGACCTTGATCTCCAGCTTC +
Preference number: 2 (lower is better)
Translates to: SFGLLLLTRHVMVTE*FFSTSVGLTLISSF
Trigger: GAAGCTGGAGATCAAGGTCAATCCCACAGAGGTGGAAAAGAACAATTCTGTGACCATGACATGCCGGGTTAACAGCAGCAACCCGAAACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187989.7
3UTR CAA 90 bp CCTATGTCGTTGGAAGCCTGGCACCGGTATTTCCCTCTCATGTCCTaGGTCACTGAATGCAGAATTAGCTTGGACATCTGTTGTTCCTGT +
Preference number: 2 (lower is better)
Translates to: PMSLEAWHRYFPLMS*VTECRISLDICCSC
Trigger: ACAGGAACAACAGATGTCCAAGCTAATTCTGCATTCAGTGACCAAGGACATGAGAGGGAAATACCGGTGCCAGGCTTCCAACGACATAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187989.7
3UTR-3UTR TCA 90 bp GCAGCTGAAGGAGTTGTCTTCTTTAGGCTCAAGAACCTGAAACAGCAGCTGCTATTAGGCTCAAGAACCTaGAACAGCAGCTGCTACCCA +
Preference number: 2 (lower is better)
Translates to: AAEGVVFFRLKNLKQQLLLGSRT*NSSCYP
Trigger: TGGGTAGCAGCTGCTGTTTCAGGTTCTTGAGCCTAA...TAGCAGCTGCTGTTTCAGGTTCTTGAGCCTAAAGAAGACAACTCCTTCAGCTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000187989.7
ENSMUST00000189718.7
ENSMUST00000190617.7
ENSMUST00000190646.7
3UTR-3UTR TCA 90 bp GTAGAAGAAAAGCCAACTGGGGACAGTGCCTCTTGCTTCCTTACTTCTGTCCTTTTAGGCTCAAGAACCTaGAACAGCAGCTGCTACCCA +
Preference number: 2 (lower is better)
Translates to: VEEKPTGDSASCFLTSVLLGSRT*NSSCYP
Trigger: TGGGTAGCAGCTGCTGTTTCAGGTTCTTGAGCCTAA...AAGGACAGAAGTAAGGAAGCAAGAGGCACTGTCCCCAGTTGGCTTTTCTTCTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
3UTR-3UTR TCA 90 bp CGGGGTAGAGTATCAAGGGGTCAGAGAAGAAGTGTTAGTGACGATTACAACAGGAATACAGGGTTTCCTTaGAAAACCCTGGCTGTCCTG +
Preference number: 2 (lower is better)
Translates to: RGRVSRGQRRSVSDDYNRNTGFP*KTLAVL
Trigger: CAGGACAGCCAGGGTTTTTCAAGGAAACCCTGTATT...CCTGTTGTAATCGTCACTAACACTTCTTCTCTGACCCCTTGATACTCTACCCCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
3UTR-3UTR GCA 90 bp CTTTGTAGAAGAAAAGCCAACTGGGGACAGTGCCTCTTGCTTCCTTACTTCTGTGGGGACAGTGCCTCTTaGTTCCTTACTTCTGTCCTT +
Preference number: 2 (lower is better)
Translates to: LCRRKANWGQCLLLPYFCGDSAS*FLTSVL
Trigger: AAGGACAGAAGTAAGGAAGCAAGAGGCACTGTCCCC...ACAGAAGTAAGGAAGCAAGAGGCACTGTCCCCAGTTGGCTTTTCTTCTACAAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
3UTR-3UTR GCA 90 bp CTTTGTAGAAGAAAAGCCAACTGGGGACAGTGCCTCTTGCTTCCTTACTTCTGTACCCAGACGGTTCTCTaGCAAGCAAGAGTAATTCCC +
Preference number: 2 (lower is better)
Translates to: LCRRKANWGQCLLLPYFCTQTVL*QARVIP
Trigger: GGGAATTACTCTTGCTTGGCAGAGAACCGTCTGGGT...ACAGAAGTAAGGAAGCAAGAGGCACTGTCCCCAGTTGGCTTTTCTTCTACAAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000190646.7
3UTR-3UTR CCA 90 bp CGGGGTAGAGTATCAAGGGGTCAGAGAAGAAGTGTTAGTGACGATTACAACAGGCCCAGGGCCAGAAAGTaGGTAGTAAGATTAGTGAAC +
Preference number: 2 (lower is better)
Translates to: RGRVSRGQRRSVSDDYNRPRARK*VVRLVN
Trigger: GTTCACTAATCTTACTACCCACTTTCTGGCCCTGGG...CCTGTTGTAATCGTCACTAACACTTCTTCTCTGACCCCTTGATACTCTACCCCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
3UTR-3UTR CCA 90 bp GTAGAAGAAAAGCCAACTGGGGACAGTGCCTCTTGCTTCCTTACTTCTGTCCTTCCCAGGGCCAGAAAGTaGGTAGTAAGATTAGTGAAC +
Preference number: 2 (lower is better)
Translates to: VEEKPTGDSASCFLTSVLPRARK*VVRLVN
Trigger: GTTCACTAATCTTACTACCCACTTTCTGGCCCTGGG...AAGGACAGAAGTAAGGAAGCAAGAGGCACTGTCCCCAGTTGGCTTTTCTTCTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
3UTR-3UTR CCA 90 bp TCCAGTGTTGTGCGTGTCACTCTCTGGAAAGCGCAAGATGGCATAACTAACGGTTTGTTGCACTTGGACTaGCCAGTGACTCACAAATCA +
Preference number: 2 (lower is better)
Translates to: SSVVRVTLWKAQDGITNGLLHLD*PVTHKS
Trigger: TGATTTGTGAGTCACTGGCCAGTCCAAGTGCAACAA...ACCGTTAGTTATGCCATCTTGCGCTTTCCAGAGAGTGACACGCACAACACTGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000187989.7
ENSMUST00000190646.7
3UTR CAA 90 bp TTCCCACTGTCATTGGCACGTATCGGGTGGATTTTCAGGGTACAATaGTCTATTCTGTTCCCCAGAAATGTTACTCTCCCTTGCTTAGAA +
Preference number: 2 (lower is better)
Translates to: FPLSLARIGWIFRVQ*SILFPRNVTLPCLE
Trigger: TTCTAAGCAAGGGAGAGTAACATTTCTGGGGAACAGAATAGACAATTGTACCCTGAAAATCCACCCGATACGTGCCAATGACAGTGGGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187989.7
3UTR-3UTR CAA 90 bp AGCGTCCAGGACCCCCGAGGGAAGGCACCATCTCCACAGAAGGTCCAACATCTTGGTGGGTGCCTGGGGTaGGAGAAGCAGACGTGGCAC +
Preference number: 3 (lower is better)
Translates to: SVQDPRGKAPSPQKVQHLGGCLG*EKQTWH
Trigger: GTGCCACGTCTGCTTCTCCAACCCCAGGCACCCACC...AAGATGTTGGACCTTCTGTGGAGATGGTGCCTTCCCTCGGGGGTCCTGGACGCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
3UTR TCA 72 bp TGCCTGGGGTTGGAGAAGCAGACGTGGCACAATGCGTaGGGGAGGATCACCAGCCAGAGAAGGCCGGTCAGG +
Preference number: 3 (lower is better)
Translates to: CLGLEKQTWHNA*GRITSQRRPVR
Trigger: CCTGACCGGCCTTCTCTGGCTGGTGATCCTCCCTCACGCATTGTGCCACGTCTGCTTCTCCAACCCCAGGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
3UTR TCA 72 bp TGGCCTTCTTCCCCTCCATCACATGGTCCCCAGGGCTaGTGGACACACGCAGCCTCCGAGGAGCATACAGCA +
Preference number: 3 (lower is better)
Translates to: WPSSPPSHGPQG*WTHAASEEHTA
Trigger: TGCTGTATGCTCCTCGGAGGCTGCGTGTGTCCATCAGCCCTGGGGACCATGTGATGGAGGGGAAGAAGGCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000187989.7
ENSMUST00000190646.7
3UTR CCA 72 bp TCACAGGACAAGGTGGCCTTCTTCCCCTCCATCACATaGTCCCCAGGGCTGATGGACACACGCAGCCTCCGA +
Preference number: 3 (lower is better)
Translates to: SQDKVAFFPSIT*SPGLMDTRSLR
Trigger: TCGGAGGCTGCGTGTGTCCATCAGCCCTGGGGACCATGTGATGGAGGGGAAGAAGGCCACCTTGTCCTGTGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000187989.7
ENSMUST00000190646.7
3UTR-3UTR CAA 90 bp GTCAGGCAGAAGCCTAGTCCCAAGGCGACCCGCTTGCCGATGGTCTCTGGACTGCACGAACACTTGTGGTaGCAGGCAGCACAGCTGACA +
Preference number: 3 (lower is better)
Translates to: VRQKPSPKATRLPMVSGLHEHLW*QAAQLT
Trigger: TGTCAGCTGTGCTGCCTGCAACCACAAGTGTTCGTG...CAGTCCAGAGACCATCGGCAAGCGGGTCGCCTTGGGACTAGGCTTCTGCCTGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000187989.7
ENSMUST00000190646.7
3UTR TCA 72 bp CCCGCTTGCCGATGGTCTCTGGACTGTAGTAGACAGTaGGGGTGCTGGGTGGTGACTCTCCTGTGCCTATCC +
Preference number: 3 (lower is better)
Translates to: PACRWSLDCSRQ*GCWVVTLLCLS
Trigger: GGATAGGCACAGGAGAGTCACCACCCAGCACCCTCACTGTCTACTACAGTCCAGAGACCATCGGCAAGCGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000187989.7
ENSMUST00000190646.7
3UTR-3UTR CAA 90 bp GACGATTACAACAGGAACACATCCAGCTGCAGTGAGGCACAGGATGGAGCAGATGGTGGGTGCCTGGGGTaGGAGAAGCAGACGTGGCAC +
Preference number: 3 (lower is better)
Translates to: DDYNRNTSSCSEAQDGADGGCLG*EKQTWH
Trigger: GTGCCACGTCTGCTTCTCCAACCCCAGGCACCCACC...ATCTGCTCCATCCTGTGCCTCACTGCAGCTGGATGTGTTCCTGTTGTAATCGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
3UTR-3UTR CAA 90 bp CGAGGAGCATACAGCACTTGGAGGTTCCAGGCCTGTGACAAGGTCTCTCCGATGCTCAGCACTCCGGGTTaGAGCACACTCCCAGAACCT +
Preference number: 3 (lower is better)
Translates to: RGAYSTWRFQACDKVSPMLSTPG*STLPEP
Trigger: AGGTTCTGGGAGTGTGCTCAAACCCGGAGTGCTGAG...CATCGGAGAGACCTTGTCACAGGCCTGGAACCTCCAAGTGCTGTATGCTCCTCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000187989.7
ENSMUST00000190646.7
3UTR CCA 72 bp ATGGACACACGCAGCCTCCGAGGAGCATACAGCACTTaGAGGTTCCAGGCCTGTGACAAGGTCTCTCCGATG +
Preference number: 3 (lower is better)
Translates to: MDTRSLRGAYST*RFQACDKVSPM
Trigger: CATCGGAGAGACCTTGTCACAGGCCTGGAACCTCCAAGTGCTGTATGCTCCTCGGAGGCTGCGTGTGTCCAT
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000187989.7
ENSMUST00000190646.7
3UTR CCA 72 bp GTGTGTTGGACCTCCAGGGGTTCCAGTCTCAGTTTCTaGCCTGAGGAGTGGAGGTCTTGGCCACTGGAGTCA +
Preference number: 3 (lower is better)
Translates to: VCWTSRGSSLSF*PEEWRSWPLES
Trigger: TGACTCCAGTGGCCAAGACCTCCACTCCTCAGGCCAGAAACTGAGACTGGAACCCCTGGAGGTCCAACACAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000187989.7
ENSMUST00000190646.7
3UTR CCA 72 bp CGAGTCGCTGTTGTTTGGAGGAGGAGCCTGTGTTGCTaGGGTCCCTGCATCTCCAGTGTTGTGCGTGTCACT +
Preference number: 3 (lower is better)
Translates to: RVAVVWRRSLCC*GPCISSVVRVT
Trigger: AGTGACACGCACAACACTGGAGATGCAGGGACCCCAGCAACACAGGCTCCTCCTCCAAACAACAGCGACTCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000187989.7
ENSMUST00000190646.7
3UTR-3UTR CAA 90 bp AGCGTCCAGGACCCCCGAGGGAAGGCACCATCTCCACAGAAGGTCCAACATCTTTGGGGACAGTGCCTCTaGCTTCCTTACTTCTGTCCT +
Preference number: 3 (lower is better)
Translates to: SVQDPRGKAPSPQKVQHLWGQCL*LPYFCP
Trigger: AGGACAGAAGTAAGGAAGCAAGAGGCACTGTCCCCA...AAGATGTTGGACCTTCTGTGGAGATGGTGCCTTCCCTCGGGGGTCCTGGACGCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
3UTR-3UTR CAA 90 bp CCTGGGGTTGGAGAAGCAGACGTGGCACAATGCGTGAGGGAGGATCACCAGCCATGTAGTTTGTTGCACTaGGACTGGCCAGTGACTCAC +
Preference number: 3 (lower is better)
Translates to: PGVGEADVAQCVREDHQPCSLLH*DWPVTH
Trigger: GTGAGTCACTGGCCAGTCCAAGTGCAACAAACTACA...TGGCTGGTGATCCTCCCTCACGCATTGTGCCACGTCTGCTTCTCCAACCCCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190646.7
3UTR TCA 72 bp TTGGACCTCCAGGGGTTCCAGTCTCAGTTTCTGGCCTaGGGAGTGGAGGTCTTGGCCACTGGAGTCAAACCA +
Preference number: 3 (lower is better)
Translates to: LDLQGFQSQFLA*GVEVLATGVKP
Trigger: TGGTTTGACTCCAGTGGCCAAGACCTCCACTCCTCAGGCCAGAAACTGAGACTGGAACCCCTGGAGGTCCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000187989.7
ENSMUST00000190646.7
3UTR GCA 72 bp CATTCTTCTTCCAGAAGAAGCGGACCTCTGCCGGGTTaGTCTCTGCGAAGTCGCATTGGAGGAGGACACGCT +
Preference number: 3 (lower is better)
Translates to: HSSSRRSGPLPG*SLRSRIGGGHA
Trigger: AGCGTGTCCTCCTCCAATGCGACTTCGCAGAGAGCAACCCGGCAGAGGTCCGCTTCTTCTGGAAGAAGAATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000187989.7
ENSMUST00000190646.7
3UTR GCA 72 bp GAGACTCCCATTCTTCTTCCAGAAGAAGCGGACCTCTaGCGGGTTGCTCTCTGCGAAGTCGCATTGGAGGAG +
Preference number: 3 (lower is better)
Translates to: ETPILLPEEADL*RVALCEVALEE
Trigger: CTCCTCCAATGCGACTTCGCAGAGAGCAACCCGGCAGAGGTCCGCTTCTTCTGGAAGAAGAATGGGAGTCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000187989.7
ENSMUST00000190646.7
3UTR CCA 72 bp ACATTCAGGATGACAGGGAGGGCCCACGAACACTTGTaGTTGCAGGCAGCACAGCTGACAGGCATGGAATCC +
Preference number: 3 (lower is better)
Translates to: TFRMTGRAHEHL*LQAAQLTGMES
Trigger: GGATTCCATGCCTGTCAGCTGTGCTGCCTGCAACCACAAGTGTTCGTGGGCCCTCCCTGTCATCCTGAATGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000187989.7
ENSMUST00000190646.7
3UTR TCA 72 bp GGGCCCACGAACACTTGTGGTTGCAGGCAGCACAGCTaGCAGGCATGGAATCCCATGTCACTTTCTGAATCC +
Preference number: 3 (lower is better)
Translates to: GPTNTCGCRQHS*QAWNPMSLSES
Trigger: GGATTCAGAAAGTGACATGGGATTCCATGCCTGTCAGCTGTGCTGCCTGCAACCACAAGTGTTCGTGGGCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000187989.7
ENSMUST00000190646.7
3UTR TCA 72 bp CCGAGGAGCATACAGCACTTGGAGGTTCCAGGCCTGTaGCAAGGTCTCTCCGATGGAGTTGTTGACCATGCA +
Preference number: 3 (lower is better)
Translates to: PRSIQHLEVPGL*QGLSDGVVDHA
Trigger: TGCATGGTCAACAACTCCATCGGAGAGACCTTGTCACAGGCCTGGAACCTCCAAGTGCTGTATGCTCCTCGG
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000187989.7
ENSMUST00000190646.7
3UTR TCA 72 bp CTCTGGACTGTAGTAGACAGTGAGGGTGCTGGGTGGTaGCTCTCCTGTGCCTATCCCATTGGTCCCTTTGCA +
Preference number: 3 (lower is better)
Translates to: LWTVVDSEGAGW*LSCAYPIGPFA
Trigger: TGCAAAGGGACCAATGGGATAGGCACAGGAGAGTCACCACCCAGCACCCTCACTGTCTACTACAGTCCAGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000187989.7
ENSMUST00000190646.7
3UTR TCA 72 bp TGTGAACCCTGGAGGGTTCTGGAGCATAGTGCACCGTaGGTTCCACTTCTTCCGACTCTCCTGGGCCTATGT +
Preference number: 3 (lower is better)
Translates to: CEPWRVLEHSAP*VPLLPTLLGLC
Trigger: ACATAGGCCCAGGAGAGTCGGAAGAAGTGGAACTCACGGTGCACTATGCTCCAGAACCCTCCAGGGTTCACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187989.7
3UTR CCA 72 bp CTTGGCCACTGGAGTCAAACCAGGTGTACTGTGAGATaGGCGGATTGGCATCACTCTCACAGGACAAGGTGG +
Preference number: 3 (lower is better)
Translates to: LGHWSQTRCTVR*ADWHHSHRTRW
Trigger: CCACCTTGTCCTGTGAGAGTGATGCCAATCCGCCCATCTCACAGTACACCTGGTTTGACTCCAGTGGCCAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000187989.7
ENSMUST00000190646.7
3UTR CCA 72 bp ATGCAGGCTCCCTCCCAGGCAAAGAGGGTTTGGGGATaGTCAACGGTCCAATCATTTGCTGAGCTGTACCGA +
Preference number: 3 (lower is better)
Translates to: MQAPSQAKRVWG*STVQSFAELYR
Trigger: TCGGTACAGCTCAGCAAATGATTGGACCGTTGACCATCCCCAAACCCTCTTTGCCTGGGAGGGAGCCTGCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187989.7
3UTR CCA 72 bp TCTTCCGACTCTCCTGGGCCTATGTCGTTGGAAGCCTaGCACCGGTATTTCCCTCTCATGTCCTTGGTCACT +
Preference number: 3 (lower is better)
Translates to: SSDSPGPMSLEA*HRYFPLMSLVT
Trigger: AGTGACCAAGGACATGAGAGGGAAATACCGGTGCCAGGCTTCCAACGACATAGGCCCAGGAGAGTCGGAAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187989.7
3UTR-3UTR CAA 90 bp ATGGAGCAGATGGTGGTGGGTGCCTGGGGTTGGAGAAGCAGACGTGGCACAATGCAATACAGGGTTTCCTaGAAAAACCCTGGCTGTCCT +
Preference number: 3 (lower is better)
Translates to: MEQMVVGAWGWRSRRGTMQYRVS*KNPGCP
Trigger: AGGACAGCCAGGGTTTTTCAAGGAAACCCTGTATTG...CATTGTGCCACGTCTGCTTCTCCAACCCCAGGCACCCACCACCATCTGCTCCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
3UTR-3UTR CAA 90 bp CTTTGTAGAAGAAAAGCCAACTGGGGACAGTGCCTCTTGCTTCCTTACTTCTGTGGTGGGTGCCTGGGGTaGGAGAAGCAGACGTGGCAC +
Preference number: 3 (lower is better)
Translates to: LCRRKANWGQCLLLPYFCGGCLG*EKQTWH
Trigger: GTGCCACGTCTGCTTCTCCAACCCCAGGCACCCACC...ACAGAAGTAAGGAAGCAAGAGGCACTGTCCCCAGTTGGCTTTTCTTCTACAAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
3UTR TCA 72 bp GAGGTCTTGGCCACTGGAGTCAAACCAGGTGTACTGTaGGATGGGCGGATTGGCATCACTCTCACAGGACAA +
Preference number: 3 (lower is better)
Translates to: EVLATGVKPGVL*DGRIGITLTGQ
Trigger: TTGTCCTGTGAGAGTGATGCCAATCCGCCCATCTCACAGTACACCTGGTTTGACTCCAGTGGCCAAGACCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000187989.7
ENSMUST00000190646.7
3UTR TCA 72 bp GAACCTGAAACAGCAGCTGCTACCCACCTCAGTGCTTaGGGGTCACATAGTCTACGTCTTCCTTTGCCTGGG +
Preference number: 3 (lower is better)
Translates to: EPETAAATHLSA*GSHSLRLPLPG
Trigger: CCCAGGCAAAGGAAGACGTAGACTATGTGACCCTCAAGCACTGAGGTGGGTAGCAGCTGCTGTTTCAGGTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000187989.7
ENSMUST00000190646.7
3UTR TCA 72 bp CCTTGGGTAGTGGAGTTTTGTACTTGCAAGGAATCCTaGTGCAGGCTCCCTCCCAGGCAAAGAGGGTTTGGG +
Preference number: 3 (lower is better)
Translates to: PWVVEFCTCKES*CRLPPRQRGFG
Trigger: CCCAAACCCTCTTTGCCTGGGAGGGAGCCTGCATCAGGATTCCTTGCAAGTACAAAACTCCACTACCCAAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187989.7
3UTR TCA 72 bp CGGGGTATACTTAACATCCAGACGCACAGTGCGCTCTaGGAGCACTTTGGAGGAGTGCTGGACTTGGCACTT +
Preference number: 3 (lower is better)
Translates to: RGILNIQTHSAL*EHFGGVLDLAL
Trigger: AAGTGCCAAGTCCAGCACTCCTCCAAAGTGCTCTCAGAGCGCACTGTGCGTCTGGATGTTAAGTATACCCCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187989.7
3UTR CCA 72 bp TGGAGTCAAACCAGGTGTACTGTGAGATGGGCGGATTaGCATCACTCTCACAGGACAAGGTGGCCTTCTTCC +
Preference number: 3 (lower is better)
Translates to: WSQTRCTVRWAD*HHSHRTRWPSS
Trigger: GGAAGAAGGCCACCTTGTCCTGTGAGAGTGATGCCAATCCGCCCATCTCACAGTACACCTGGTTTGACTCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000187989.7
ENSMUST00000190646.7
3UTR CCA 72 bp TCCAGTCTCAGTTTCTGGCCTGAGGAGTGGAGGTCTTaGCCACTGGAGTCAAACCAGGTGTACTGTGAGATG +
Preference number: 3 (lower is better)
Translates to: SSLSFWPEEWRS*PLESNQVYCEM
Trigger: CATCTCACAGTACACCTGGTTTGACTCCAGTGGCCAAGACCTCCACTCCTCAGGCCAGAAACTGAGACTGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000187989.7
ENSMUST00000190646.7
3UTR-3UTR CAA 90 bp GGTAGTAAGATTAGTGAACGGGGTAGAGTATCAAGGGGTCAGAGAAGAAGTGTTGGTGGGTGCCTGGGGTaGGAGAAGCAGACGTGGCAC +
Preference number: 3 (lower is better)
Translates to: GSKISERGRVSRGQRRSVGGCLG*EKQTWH
Trigger: GTGCCACGTCTGCTTCTCCAACCCCAGGCACCCACC...AACACTTCTTCTCTGACCCCTTGATACTCTACCCCGTTCACTAATCTTACTACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
3UTR-3UTR CAA 90 bp TTATATATGTCCATTCCGTTCTGTCTGCTCAGCGTCCAGGACCCCCGAGGGAAGTGGGGACAGTGCCTCTaGCTTCCTTACTTCTGTCCT +
Preference number: 3 (lower is better)
Translates to: LYMSIPFCLLSVQDPRGKWGQCL*LPYFCP
Trigger: AGGACAGAAGTAAGGAAGCAAGAGGCACTGTCCCCA...CTTCCCTCGGGGGTCCTGGACGCTGAGCAGACAGAACGGAATGGACATATATAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
3UTR TCA 72 bp CACTCCCAGAACCTTGAGGGTTCCATCTGTAGGAGGTaGCGTCTGGATTGCTGGAGTTGTACCTACAGACCA +
Preference number: 3 (lower is better)
Translates to: HSQNLEGSICRR*RLDCWSCTYRP
Trigger: TGGTCTGTAGGTACAACTCCAGCAATCCAGACGTCACCTCCTACAGATGGAACCCTCAAGGTTCTGGGAGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000187989.7
ENSMUST00000190646.7
3UTR TCA 72 bp CCCATGTCACTTTCTGAATCCTCAGCACTCCGGGTTTaGGCACACTCCCAGAACCTTGAGGGTTCCATCTGT +
Preference number: 3 (lower is better)
Translates to: PMSLSESSALRV*AHSQNLEGSIC
Trigger: ACAGATGGAACCCTCAAGGTTCTGGGAGTGTGCTCAAACCCGGAGTGCTGAGGATTCAGAAAGTGACATGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000187989.7
ENSMUST00000190646.7
3UTR GCA 72 bp AAAGCGCAAGATGGCATAACTAACGGTGTCATCCATTaGCGGATTGTAGCATCCCTGGGATTGGGGGCCTTC +
Preference number: 3 (lower is better)
Translates to: KAQDGITNGVIH*RIVASLGLGAF
Trigger: GAAGGCCCCCAATCCCAGGGATGCTACAATCCGGCAATGGATGACACCGTTAGTTATGCCATCTTGCGCTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000187989.7
ENSMUST00000190646.7
3UTR GCA 72 bp TACCAGCCCCAAACTGAACCAGCTCTGAGTAATGGATaGTCTCATCCTCCGGGCAGCTCGGATTCACATTCT +
Preference number: 3 (lower is better)
Translates to: YQPQTEPALSNG*SHPPGSSDSHS
Trigger: AGAATGTGAATCCGAGCTGCCCGGAGGATGAGAGCATCCATTACTCAGAGCTGGTTCAGTTTGGGGCTGGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000187989.7
ENSMUST00000190646.7
3UTR-3UTR CAA 90 bp GTAGAGTATCAAGGGGTCAGAGAAGAAGTGTTAGTGACGATTACAACAGGAACAGGTGGGTGCCTGGGGTaGGAGAAGCAGACGTGGCAC +
Preference number: 3 (lower is better)
Translates to: VEYQGVREEVLVTITTGTGGCLG*EKQTWH
Trigger: GTGCCACGTCTGCTTCTCCAACCCCAGGCACCCACC...TGTTCCTGTTGTAATCGTCACTAACACTTCTTCTCTGACCCCTTGATACTCTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
3UTR-3UTR CAA 90 bp GCAGCTGAAGGAGTTGTCTTCTTTAGGCTCAAGAACCTGAAACAGCAGCTGCTAGTGACCGAGTCGCTGTaGTTTGGAGGAGGAGCCTGT +
Preference number: 3 (lower is better)
Translates to: AAEGVVFFRLKNLKQQLLVTESL*FGGGAC
Trigger: ACAGGCTCCTCCTCCAAACAACAGCGACTCGGTCAC...TAGCAGCTGCTGTTTCAGGTTCTTGAGCCTAAAGAAGACAACTCCTTCAGCTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000187989.7
ENSMUST00000190646.7
3UTR-3UTR CAA 90 bp ATTCAGGATGACAGGGAGGGCCCACGAACACTTGTGGTTGCAGGCAGCACAGCTTTGGGTAGTGGAGTTTaGTACTTGCAAGGAATCCTG +
Preference number: 3 (lower is better)
Translates to: IQDDREGPRTLVVAGSTALGSGV*YLQGIL
Trigger: CAGGATTCCTTGCAAGTACAAAACTCCACTACCCAA...AGCTGTGCTGCCTGCAACCACAAGTGTTCGTGGGCCCTCCCTGTCATCCTGAAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187989.7
3UTR-3UTR CAA 90 bp TCCTTACTTCTGTCCTTCCTGGGGATTTCTCCCCAGGGCCAGAAAGTGGGTAGTCAGCAGCTGAAGGAGTaGTCTTCTTTAGGCTCAAGA +
Preference number: 3 (lower is better)
Translates to: SLLLSFLGISPQGQKVGSQQLKE*SSLGSR
Trigger: TCTTGAGCCTAAAGAAGACAACTCCTTCAGCTGCTG...ACTACCCACTTTCTGGCCCTGGGGAGAAATCCCCAGGAAGGACAGAAGTAAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
3UTR-3UTR CAA 90 bp TCCTTACTTCTGTCCTTCCTGGGGATTTCTCCCCAGGGCCAGAAAGTGGGTAGTCAATACAGGGTTTCCTaGAAAAACCCTGGCTGTCCT +
Preference number: 3 (lower is better)
Translates to: SLLLSFLGISPQGQKVGSQYRVS*KNPGCP
Trigger: AGGACAGCCAGGGTTTTTCAAGGAAACCCTGTATTG...ACTACCCACTTTCTGGCCCTGGGGAGAAATCCCCAGGAAGGACAGAAGTAAGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
3UTR-3UTR CAA 90 bp CCCGAGGGAAGGCACCATCTCCACAGAAGGTCCAACATCTTTGTAGAAGAAAAGTGGGGACAGTGCCTCTaGCTTCCTTACTTCTGTCCT +
Preference number: 3 (lower is better)
Translates to: PEGRHHLHRRSNIFVEEKWGQCL*LPYFCP
Trigger: AGGACAGAAGTAAGGAAGCAAGAGGCACTGTCCCCA...CTTTTCTTCTACAAAGATGTTGGACCTTCTGTGGAGATGGTGCCTTCCCTCGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
3UTR-3UTR CAA 90 bp TCCAGTGTTGTGCGTGTCACTCTCTGGAAAGCGCAAGATGGCATAACTAACGGTACCAGGTGTAGTTTGTaGCACTTGGACTGGCCAGTG +
Preference number: 3 (lower is better)
Translates to: SSVVRVTLWKAQDGITNGTRCSL*HLDWPV
Trigger: CACTGGCCAGTCCAAGTGCAACAAACTACACCTGGT...ACCGTTAGTTATGCCATCTTGCGCTTTCCAGAGAGTGACACGCACAACACTGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000187989.7
ENSMUST00000190646.7
3UTR-3UTR CAA 90 bp GAAGTGTTAGTGACGATTACAACAGGAACACATCCAGCTGCAGTGAGGCACAGGACCAGGTGTAGTTTGTaGCACTTGGACTGGCCAGTG +
Preference number: 3 (lower is better)
Translates to: EVLVTITTGTHPAAVRHRTRCSL*HLDWPV
Trigger: CACTGGCCAGTCCAAGTGCAACAAACTACACCTGGT...CCTGTGCCTCACTGCAGCTGGATGTGTTCCTGTTGTAATCGTCACTAACACTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190646.7
3UTR TCA 72 bp CAGCTGAAGGAGTTGTCTTCTTTAGGCTCAAGAACCTaGAACAGCAGCTGCTACCCACCTCAGTGCTTGAGG +
Preference number: 3 (lower is better)
Translates to: QLKELSSLGSRT*NSSCYPPQCLR
Trigger: CCTCAAGCACTGAGGTGGGTAGCAGCTGCTGTTTCAGGTTCTTGAGCCTAAAGAAGACAACTCCTTCAGCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000187989.7
ENSMUST00000190646.7
3UTR TCA 72 bp TCTGGATGTAAGGTTGGAACGGTTTCTCCGAGACATTaGGGTGAATGGGCTCCATCCATCGTTCAGTCCCTG +
Preference number: 3 (lower is better)
Translates to: SGCKVGTVSPRH*GEWAPSIVQSL
Trigger: CAGGGACTGAACGATGGATGGAGCCCATTCACCTCAATGTCTCGGAGAAACCGTTCCAACCTTACATCCAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187989.7
3UTR TCA 72 bp ATTAGCTTGGACATCTGTTGTTCCTGTTCCAGTTCCTaGTCCTCTAGGGGGCGCCCATCCTTGAACCAAGAC +
Preference number: 3 (lower is better)
Translates to: ISLDICCSCSSS*SSRGRPSLNQD
Trigger: GTCTTGGTTCAAGGATGGGCGCCCCCTAGAGGATCAGGAACTGGAACAGGAACAACAGATGTCCAAGCTAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000187989.7
3UTR CCA 72 bp ATTATCATCAAGGCAGGAGGATGGCAGCATCCAGGTTaGCATGGTGCAGGAGGAGCTGAGAGTTCTACATCT +
Preference number: 3 (lower is better)
Translates to: IIIKAGGWQHPG*HGAGGAESSTS
Trigger: AGATGTAGAACTCTCAGCTCCTCCTGCACCATGCCAACCTGGATGCTGCCATCCTCCTGCCTTGATGATAAT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019248.13
3UTR-3UTR CAA 90 bp GGATTTCTCCCCAGGGCCAGAAAGTGGGTAGTAAGATTAGTGAACGGGGTAGAGCAGCAGCTGAAGGAGTaGTCTTCTTTAGGCTCAAGA +
Preference number: 3 (lower is better)
Translates to: GFLPRARKWVVRLVNGVEQQLKE*SSLGSR
Trigger: TCTTGAGCCTAAAGAAGACAACTCCTTCAGCTGCTG...CTCTACCCCGTTCACTAATCTTACTACCCACTTTCTGGCCCTGGGGAGAAATCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
3UTR-3UTR CAA 90 bp ACTTTAGGGATGCGGAGCTTCTCTTGGGTGTCTCCAGGTATAGGTTTCCTGTTGTGTAGTTTGTTGCACTaGGACTGGCCAGTGACTCAC +
Preference number: 3 (lower is better)
Translates to: TLGMRSFSWVSPGIGFLLCSLLH*DWPVTH
Trigger: GTGAGTCACTGGCCAGTCCAAGTGCAACAAACTACA...CAACAGGAAACCTATACCTGGAGACACCCAAGAGAAGCTCCGCATCCCTAAAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000187989.7
ENSMUST00000190646.7
3UTR TCA 72 bp GTGCCTCTAGGGACTGATTTGATAATGAGATTACCCTaGGTCTTTTCCCCTCCCTCTAGGCACCAAGAAGCC +
Preference number: 3 (lower is better)
Translates to: VPLGTDLIMRLP*VFSPPSRHQEA
Trigger: GGCTTCTTGGTGCCTAGAGGGAGGGGAAAAGACTCAGGGTAATCTCATTATCAAATCAGTCCCTAGAGGCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019248.13
3UTR GCA 72 bp CACTTATTGAATTATATATGTCCATTCCGTTCTGTCTaGTCAGCGTCCAGGACCCCCGAGGGAAGGCACCAT +
Preference number: 3 (lower is better)
Translates to: HLLNYICPFRSV*SASRTPEGRHH
Trigger: ATGGTGCCTTCCCTCGGGGGTCCTGGACGCTGAGCAGACAGAACGGAATGGACATATATAATTCAATAAGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
3UTR-3UTR CAA 90 bp CGAGGGAAGGCACCATCTCCACAGAAGGTCCAACATCTTTGTAGAAGAAAAGCCCAGCAGCTGAAGGAGTaGTCTTCTTTAGGCTCAAGA +
Preference number: 3 (lower is better)
Translates to: RGKAPSPQKVQHLCRRKAQQLKE*SSLGSR
Trigger: TCTTGAGCCTAAAGAAGACAACTCCTTCAGCTGCTG...GGCTTTTCTTCTACAAAGATGTTGGACCTTCTGTGGAGATGGTGCCTTCCCTCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
3UTR-3UTR CAA 90 bp CTTAGCTTCCTGGTCTATCTTTCCATGACCCAGACGGTTCTCTGCCAAGCAAGACAGCAGCTGAAGGAGTaGTCTTCTTTAGGCTCAAGA +
Preference number: 3 (lower is better)
Translates to: LSFLVYLSMTQTVLCQARQQLKE*SSLGSR
Trigger: TCTTGAGCCTAAAGAAGACAACTCCTTCAGCTGCTG...TCTTGCTTGGCAGAGAACCGTCTGGGTCATGGAAAGATAGACCAGGAAGCTAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000187989.7
ENSMUST00000190646.7
3UTR TCA 72 bp ACAGGTCAGAGTGACACTTTGGGATTCCCGGATTTCTaGTGGCATCTGGATGTAAGGTTGGAACGGTTTCTC +
Preference number: 3 (lower is better)
Translates to: TGQSDTLGFPDF*WHLDVRLERFL
Trigger: GAGAAACCGTTCCAACCTTACATCCAGATGCCATCAGAAATCCGGGAATCCCAAAGTGTCACTCTGACCTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187989.7
3UTR CCA 72 bp AACCCCAGATTCCCACTGTCATTGGCACGTATCGGGTaGATTTTCAGGGTACAATTGTCTATTCTGTTCCCC +
Preference number: 3 (lower is better)
Translates to: NPRFPLSLARIG*IFRVQLSILFP
Trigger: GGGGAACAGAATAGACAATTGTACCCTGAAAATCCACCCGATACGTGCCAATGACAGTGGGAATCTGGGGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187989.7
3UTR CCA 72 bp TTGGCACTTCACACTCTTTCCGTGGTCCGTCCACTTTaGTTGGAAGGTGAGCTTGCTCTCTGTATAGACATT +
Preference number: 3 (lower is better)
Translates to: LALHTLSVVRPL*LEGELALCIDI
Trigger: AATGTCTATACAGAGAGCAAGCTCACCTTCCAACCAAAGTGGACGGACCACGGAAAGAGTGTGAAGTGCCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187989.7
3UTR CCA 72 bp TGGAAGCCTGGCACCGGTATTTCCCTCTCATGTCCTTaGTCACTGAATGCAGAATTAGCTTGGACATCTGTT +
Preference number: 3 (lower is better)
Translates to: WKPGTGISLSCP*SLNAELAWTSV
Trigger: AACAGATGTCCAAGCTAATTCTGCATTCAGTGACCAAGGACATGAGAGGGAAATACCGGTGCCAGGCTTCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187989.7
3UTR-3UTR CAA 90 bp GCAGCTGAAGGAGTTGTCTTCTTTAGGCTCAAGAACCTGAAACAGCAGCTGCTACAGCAGCTGAAGGAGTaGTCTTCTTTAGGCTCAAGA +
Preference number: 3 (lower is better)
Translates to: AAEGVVFFRLKNLKQQLLQQLKE*SSLGSR
Trigger: TCTTGAGCCTAAAGAAGACAACTCCTTCAGCTGCTG...TAGCAGCTGCTGTTTCAGGTTCTTGAGCCTAAAGAAGACAACTCCTTCAGCTGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000187989.7
ENSMUST00000189718.7
ENSMUST00000190617.7
ENSMUST00000190646.7
3UTR-3UTR CAA 90 bp ATTTCTCCCCAGGGCCAGAAAGTGGGTAGTAAGATTAGTGAACGGGGTAGAGTACAATACAGGGTTTCCTaGAAAAACCCTGGCTGTCCT +
Preference number: 3 (lower is better)
Translates to: ISPQGQKVGSKISERGRVQYRVS*KNPGCP
Trigger: AGGACAGCCAGGGTTTTTCAAGGAAACCCTGTATTG...TACTCTACCCCGTTCACTAATCTTACTACCCACTTTCTGGCCCTGGGGAGAAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
3UTR-3UTR CAA 90 bp CGGGGTAGAGTATCAAGGGGTCAGAGAAGAAGTGTTAGTGACGATTACAACAGGCAATACAGGGTTTCCTaGAAAAACCCTGGCTGTCCT +
Preference number: 3 (lower is better)
Translates to: RGRVSRGQRRSVSDDYNRQYRVS*KNPGCP
Trigger: AGGACAGCCAGGGTTTTTCAAGGAAACCCTGTATTG...CCTGTTGTAATCGTCACTAACACTTCTTCTCTGACCCCTTGATACTCTACCCCG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
3UTR-3UTR CAA 90 bp TCCAGTGTTGTGCGTGTCACTCTCTGGAAAGCGCAAGATGGCATAACTAACGGTTTCCCTCTCATGTCCTaGGTCACTGAATGCAGAATT +
Preference number: 3 (lower is better)
Translates to: SSVVRVTLWKAQDGITNGFPLMS*VTECRI
Trigger: AATTCTGCATTCAGTGACCAAGGACATGAGAGGGAA...ACCGTTAGTTATGCCATCTTGCGCTTTCCAGAGAGTGACACGCACAACACTGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187989.7
3UTR GCA 72 bp CACCGGTATTTCCCTCTCATGTCCTTGGTCACTGAATaGAGAATTAGCTTGGACATCTGTTGTTCCTGTTCC +
Preference number: 3 (lower is better)
Translates to: HRYFPLMSLVTE*RISLDICCSCS
Trigger: GGAACAGGAACAACAGATGTCCAAGCTAATTCTGCATTCAGTGACCAAGGACATGAGAGGGAAATACCGGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187989.7
3UTR CCA 72 bp CAGAAGGTCCAACATCTTTGTAGAAGAAAAGCCAACTaGGGACAGTGCCTCTTGCTTCCTTACTTCTGTCCT +
Preference number: 3 (lower is better)
Translates to: QKVQHLCRRKAN*GQCLLLPYFCP
Trigger: AGGACAGAAGTAAGGAAGCAAGAGGCACTGTCCCCAGTTGGCTTTTCTTCTACAAAGATGTTGGACCTTCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
3UTR CCA 72 bp TGTTGTGATACCAGGTGTAGTTTGTTGCACTTGGACTaGCCAGTGACTCACAAATCAGCTCTACTGACTGTC +
Preference number: 3 (lower is better)
Translates to: CCDTRCSLLHLD*PVTHKSALLTV
Trigger: GACAGTCAGTAGAGCTGATTTGTGAGTCACTGGCCAGTCCAAGTGCAACAAACTACACCTGGTATCACAACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000187989.7
ENSMUST00000190646.7
3UTR-3UTR CAA 90 bp TCCAGTGTTGTGCGTGTCACTCTCTGGAAAGCGCAAGATGGCATAACTAACGGTATTTTCAGGGTACAATaGTCTATTCTGTTCCCCAGA +
Preference number: 3 (lower is better)
Translates to: SSVVRVTLWKAQDGITNGIFRVQ*SILFPR
Trigger: TCTGGGGAACAGAATAGACAATTGTACCCTGAAAAT...ACCGTTAGTTATGCCATCTTGCGCTTTCCAGAGAGTGACACGCACAACACTGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187989.7
3UTR GCA 72 bp TTGTCTATTCTGTTCCCCAGAAATGTTACTCTCCCTTaGTTAGAAAGGTACAGCTCAGACTCTGGGTCCTTC +
Preference number: 3 (lower is better)
Translates to: LSILFPRNVTLP*LERYSSDSGSF
Trigger: GAAGGACCCAGAGTCTGAGCTGTACCTTTCTAAGCAAGGGAGAGTAACATTTCTGGGGAACAGAATAGACAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187989.7
3UTR CCA 72 bp CTCTCATGTCCTTGGTCACTGAATGCAGAATTAGCTTaGACATCTGTTGTTCCTGTTCCAGTTCCTGATCCT +
Preference number: 3 (lower is better)
Translates to: LSCPWSLNAELA*TSVVPVPVPDP
Trigger: AGGATCAGGAACTGGAACAGGAACAACAGATGTCCAAGCTAATTCTGCATTCAGTGACCAAGGACATGAGAG
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187989.7
3UTR-3UTR CAA 90 bp GTAGAGTATCAAGGGGTCAGAGAAGAAGTGTTAGTGACGATTACAACAGGAACACAATACAGGGTTTCCTaGAAAAACCCTGGCTGTCCT +
Preference number: 3 (lower is better)
Translates to: VEYQGVREEVLVTITTGTQYRVS*KNPGCP
Trigger: AGGACAGCCAGGGTTTTTCAAGGAAACCCTGTATTG...TGTTCCTGTTGTAATCGTCACTAACACTTCTTCTCTGACCCCTTGATACTCTAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
3UTR TCA 72 bp ATATTCAAACCATCACAGCTCGCATGCATGAAACCCTaGGTTCAATACCAACACTGTGAGACAATGGTGCCT +
Preference number: 3 (lower is better)
Translates to: IFKPSQLACMKP*VQYQHCETMVP
Trigger: AGGCACCATTGTCTCACAGTGTTGGTATTGAACTCAGGGTTTCATGCATGCGAGCTGTGATGGTTTGAATAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019248.13
3UTR GCA 72 bp GATCAATCACCAATACAAAGGAGTTCATGTGACAGCTaGGCCACTTTTAATATGAAGCACTTATTGAATTAT +
Preference number: 3 (lower is better)
Translates to: DQSPIQRSSCDS*ATFNMKHLLNY
Trigger: ATAATTCAATAAGTGCTTCATATTAAAAGTGGCGCAGCTGTCACATGAACTCCTTTGTATTGGTGATTGATC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019248.13
CDS-3UTR TCA 90 bp AGCAGGCTGGCCTCGAACTCAGAAATCCGCCCGCCTCTGCCTCCTGAGTGCTGGCATGGTCCCCAGGGCTaGTGGACACACGCAGCCTCC +
Preference number: 4 (lower is better)
Translates to: SRLASNSEIRPPLPPECWHGPQG*WTHAAS
Trigger: GGAGGCTGCGTGTGTCCATCAGCCCTGGGGACCATG...CCAGCACTCAGGAGGCAGAGGCGGGCGGATTTCTGAGTTCGAGGCCAGCCTGCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
CDS-3UTR TCA 90 bp AGCAGACGTGGCACAATGCGTGAGGGAGGATCACCAGCCAGAGAAGGCCGGTCACATGGTCCCCAGGGCTaGTGGACACACGCAGCCTCC +
Preference number: 4 (lower is better)
Translates to: SRRGTMREGGSPAREGRSHGPQG*WTHAAS
Trigger: GGAGGCTGCGTGTGTCCATCAGCCCTGGGGACCATG...TGACCGGCCTTCTCTGGCTGGTGATCCTCCCTCACGCATTGTGCCACGTCTGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR TCA 90 bp GTCCGTGCCCAGGGAGCTGCCGGTGCCTTAGCATCTGAGCTGCAGCAGCTGAAGACGCACAGTGCGCTCTaGGAGCACTTTGGAGGAGTG +
Preference number: 4 (lower is better)
Translates to: VRAQGAAGALASELQQLKTHSAL*EHFGGV
Trigger: CACTCCTCCAAAGTGCTCTCAGAGCGCACTGTGCGT...CTTCAGCTGCTGCAGCTCAGATGCTAAGGCACCGGCAGCTCCCTGGGCACGGAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
ENSMUST00000190646.7
CDS-3UTR TCA 90 bp GGCACAGGATGGAGCAGATGGTGGTGGGTGCCTGGGGTTGGAGAAGCAGACGTGTCCTGTTCCAGTTCCTaGTCCTCTAGGGGGCGCCCA +
Preference number: 4 (lower is better)
Translates to: GTGWSRWWWVPGVGEADVSCSSS*SSRGRP
Trigger: TGGGCGCCCCCTAGAGGATCAGGAACTGGAACAGGA...CACGTCTGCTTCTCCAACCCCAGGCACCCACCACCATCTGCTCCATCCTGTGCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR TCA 90 bp CGTGCCCAGGGAGCTGCCGGTGCCTTAGCATCTGAGCTGCAGCAGCTGAAGGAGAGTGGACATTCAGGATaGCAGGGAGGGCCCACGAAC +
Preference number: 4 (lower is better)
Translates to: RAQGAAGALASELQQLKESGHSG*QGGPTN
Trigger: GTTCGTGGGCCCTCCCTGTCATCCTGAATGTCCACT...CTCCTTCAGCTGCTGCAGCTCAGATGCTAAGGCACCGGCAGCTCCCTGGGCACG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
CDS-3UTR TCA 90 bp GTCCGTGCCCAGGGAGCTGCCGGTGCCTTAGCATCTGAGCTGCAGCAGCTGAAGTCTCAGTTTCTGGCCTaGGGAGTGGAGGTCTTGGCC +
Preference number: 4 (lower is better)
Translates to: VRAQGAAGALASELQQLKSQFLA*GVEVLA
Trigger: GGCCAAGACCTCCACTCCTCAGGCCAGAAACTGAGA...CTTCAGCTGCTGCAGCTCAGATGCTAAGGCACCGGCAGCTCCCTGGGCACGGAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
CDS-3UTR GCA 90 bp GTCCGTGCCCAGGGAGCTGCCGGTGCCTTAGCATCTGAGCTGCAGCAGCTGAAGCCATCGTTCAGTCCCTaGGGTCATCCTCAACCCCAG +
Preference number: 4 (lower is better)
Translates to: VRAQGAAGALASELQQLKPSFSP*GHPQPQ
Trigger: CTGGGGTTGAGGATGACCGCAGGGACTGAACGATGG...CTTCAGCTGCTGCAGCTCAGATGCTAAGGCACCGGCAGCTCCCTGGGCACGGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
ENSMUST00000190646.7
CDS-3UTR TCA 90 bp CGTGCCCAGGGAGCTGCCGGTGCCTTAGCATCTGAGCTGCAGCAGCTGAAGGAGGTCCACAGGTCAGAGTaGCACTTTGGGATTCCCGGA +
Preference number: 4 (lower is better)
Translates to: RAQGAAGALASELQQLKEVHRSE*HFGIPG
Trigger: TCCGGGAATCCCAAAGTGTCACTCTGACCTGTGGAC...CTCCTTCAGCTGCTGCAGCTCAGATGCTAAGGCACCGGCAGCTCCCTGGGCACG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
ENSMUST00000190646.7
CDS-3UTR TCA 90 bp AGCAGGCTGGCCTCGAACTCAGAAATCCGCCCGCCTCTGCCTCCTGAGTGCTGGGTCCACAGGTCAGAGTaGCACTTTGGGATTCCCGGA +
Preference number: 4 (lower is better)
Translates to: SRLASNSEIRPPLPPECWVHRSE*HFGIPG
Trigger: TCCGGGAATCCCAAAGTGTCACTCTGACCTGTGGAC...CCAGCACTCAGGAGGCAGAGGCGGGCGGATTTCTGAGTTCGAGGCCAGCCTGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
ENSMUST00000190646.7
CDS-3UTR TCA 90 bp GGCACAGGATGGAGCAGATGGTGGTGGGTGCCTGGGGTTGGAGAAGCAGACGTGACGCACAGTGCGCTCTaGGAGCACTTTGGAGGAGTG +
Preference number: 4 (lower is better)
Translates to: GTGWSRWWWVPGVGEADVTHSAL*EHFGGV
Trigger: CACTCCTCCAAAGTGCTCTCAGAGCGCACTGTGCGT...CACGTCTGCTTCTCCAACCCCAGGCACCCACCACCATCTGCTCCATCCTGTGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR TCA 90 bp GGCACAGGATGGAGCAGATGGTGGTGGGTGCCTGGGGTTGGAGAAGCAGACGTGAGTGGACATTCAGGATaGCAGGGAGGGCCCACGAAC +
Preference number: 4 (lower is better)
Translates to: GTGWSRWWWVPGVGEADVSGHSG*QGGPTN
Trigger: GTTCGTGGGCCCTCCCTGTCATCCTGAATGTCCACT...CACGTCTGCTTCTCCAACCCCAGGCACCCACCACCATCTGCTCCATCCTGTGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR TCA 90 bp TCTGCTCAGCGTCCAGGACCCCCGAGGGAAGGCACCATCTCCACAGAAGGTCCATCTCAGTTTCTGGCCTaGGGAGTGGAGGTCTTGGCC +
Preference number: 4 (lower is better)
Translates to: SAQRPGPPREGTISTEGPSQFLA*GVEVLA
Trigger: GGCCAAGACCTCCACTCCTCAGGCCAGAAACTGAGA...TGGACCTTCTGTGGAGATGGTGCCTTCCCTCGGGGGTCCTGGACGCTGAGCAGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR GCA 90 bp CAGGATGGAGCAGATGGTGGTGGGTGCCTGGGGTTGGAGAAGCAGACGTGGCACCCATCGTTCAGTCCCTaGGGTCATCCTCAACCCCAG +
Preference number: 4 (lower is better)
Translates to: QDGADGGGCLGLEKQTWHPSFSP*GHPQPQ
Trigger: CTGGGGTTGAGGATGACCGCAGGGACTGAACGATGG...GTGCCACGTCTGCTTCTCCAACCCCAGGCACCCACCACCATCTGCTCCATCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR GCA 90 bp CGTGCCCAGGGAGCTGCCGGTGCCTTAGCATCTGAGCTGCAGCAGCTGAAGGAGGCTCTGAGTAATGGATaGTCTCATCCTCCGGGCAGC +
Preference number: 4 (lower is better)
Translates to: RAQGAAGALASELQQLKEALSNG*SHPPGS
Trigger: GCTGCCCGGAGGATGAGAGCATCCATTACTCAGAGC...CTCCTTCAGCTGCTGCAGCTCAGATGCTAAGGCACCGGCAGCTCCCTGGGCACG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
CDS-3UTR CCA 90 bp GTCCGTGCCCAGGGAGCTGCCGGTGCCTTAGCATCTGAGCTGCAGCAGCTGAAGGCTCTGAGAGCACTTTaGAGGAGTGCTGGACTTGGC +
Preference number: 4 (lower is better)
Translates to: VRAQGAAGALASELQQLKALRAL*RSAGLG
Trigger: GCCAAGTCCAGCACTCCTCCAAAGTGCTCTCAGAGC...CTTCAGCTGCTGCAGCTCAGATGCTAAGGCACCGGCAGCTCCCTGGGCACGGAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
ENSMUST00000190646.7
CDS-3UTR CCA 90 bp GTCCGTGCCCAGGGAGCTGCCGGTGCCTTAGCATCTGAGCTGCAGCAGCTGAAGCTGGGCCTATGTCGTTaGAAGCCTGGCACCGGTATT +
Preference number: 4 (lower is better)
Translates to: VRAQGAAGALASELQQLKLGLCR*KPGTGI
Trigger: AATACCGGTGCCAGGCTTCCAACGACATAGGCCCAG...CTTCAGCTGCTGCAGCTCAGATGCTAAGGCACCGGCAGCTCCCTGGGCACGGAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
ENSMUST00000190646.7
CDS-3UTR CCA 90 bp GTCCGTGCCCAGGGAGCTGCCGGTGCCTTAGCATCTGAGCTGCAGCAGCTGAAGCTGTGCCTATCCCATTaGTCCCTTTGCAGCGGTAGG +
Preference number: 4 (lower is better)
Translates to: VRAQGAAGALASELQQLKLCLSH*SLCSGR
Trigger: CCTACCGCTGCAAAGGGACCAATGGGATAGGCACAG...CTTCAGCTGCTGCAGCTCAGATGCTAAGGCACCGGCAGCTCCCTGGGCACGGAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
CDS-3UTR TCA 90 bp GTCCGTGCCCAGGGAGCTGCCGGTGCCTTAGCATCTGAGCTGCAGCAGCTGAAGTCCGAGACATTGAGGTaGATGGGCTCCATCCATCGT +
Preference number: 4 (lower is better)
Translates to: VRAQGAAGALASELQQLKSETLR*MGSIHR
Trigger: ACGATGGATGGAGCCCATTCACCTCAATGTCTCGGA...CTTCAGCTGCTGCAGCTCAGATGCTAAGGCACCGGCAGCTCCCTGGGCACGGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
ENSMUST00000190646.7
CDS-3UTR TCA 90 bp CGTGCCCAGGGAGCTGCCGGTGCCTTAGCATCTGAGCTGCAGCAGCTGAAGGAGTCCGAGACATTGAGGTaGATGGGCTCCATCCATCGT +
Preference number: 4 (lower is better)
Translates to: RAQGAAGALASELQQLKESETLR*MGSIHR
Trigger: ACGATGGATGGAGCCCATTCACCTCAATGTCTCGGA...CTCCTTCAGCTGCTGCAGCTCAGATGCTAAGGCACCGGCAGCTCCCTGGGCACG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
ENSMUST00000190646.7
CDS-3UTR TCA 90 bp TATGTCCATTCCGTTCTGTCTGCTCAGCGTCCAGGACCCCCGAGGGAAGGCACCTGCAGGCAGCACAGCTaGCAGGCATGGAATCCCATG +
Preference number: 4 (lower is better)
Translates to: YVHSVLSAQRPGPPREGTCRQHS*QAWNPM
Trigger: CATGGGATTCCATGCCTGTCAGCTGTGCTGCCTGCA...GGTGCCTTCCCTCGGGGGTCCTGGACGCTGAGCAGACAGAACGGAATGGACATA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR GCA 90 bp GGATGGAGCAGATGGTGGTGGGTGCCTGGGGTTGGAGAAGCAGACGTGGCACAACCATCGTTCAGTCCCTaGGGTCATCCTCAACCCCAG +
Preference number: 4 (lower is better)
Translates to: GWSRWWWVPGVGEADVAQPSFSP*GHPQPQ
Trigger: CTGGGGTTGAGGATGACCGCAGGGACTGAACGATGG...TTGTGCCACGTCTGCTTCTCCAACCCCAGGCACCCACCACCATCTGCTCCATCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR GCA 90 bp CGTGCCCAGGGAGCTGCCGGTGCCTTAGCATCTGAGCTGCAGCAGCTGAAGGAGAGGTACCTCCCTTCCTaGACGAGACTCCCATTCTTC +
Preference number: 4 (lower is better)
Translates to: RAQGAAGALASELQQLKERYLPS*TRLPFF
Trigger: GAAGAATGGGAGTCTCGTGCAGGAAGGGAGGTACCT...CTCCTTCAGCTGCTGCAGCTCAGATGCTAAGGCACCGGCAGCTCCCTGGGCACG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
CDS-3UTR GCA 90 bp AGCGTCCAGGACCCCCGAGGGAAGGCACCATCTCCACAGAAGGTCCAACATCTTCCAAGGCGACCCGCTTaGCGATGGTCTCTGGACTGT +
Preference number: 4 (lower is better)
Translates to: SVQDPRGKAPSPQKVQHLPRRPA*RWSLDC
Trigger: ACAGTCCAGAGACCATCGGCAAGCGGGTCGCCTTGG...AAGATGTTGGACCTTCTGTGGAGATGGTGCCTTCCCTCGGGGGTCCTGGACGCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR CCA 90 bp CGTGCCCAGGGAGCTGCCGGTGCCTTAGCATCTGAGCTGCAGCAGCTGAAGGAGCAGGCAAAGAGGGTTTaGGGATGGTCAACGGTCCAA +
Preference number: 4 (lower is better)
Translates to: RAQGAAGALASELQQLKEQAKRV*GWSTVQ
Trigger: TTGGACCGTTGACCATCCCCAAACCCTCTTTGCCTG...CTCCTTCAGCTGCTGCAGCTCAGATGCTAAGGCACCGGCAGCTCCCTGGGCACG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
ENSMUST00000190646.7
CDS-3UTR CCA 90 bp GGCACAGGATGGAGCAGATGGTGGTGGGTGCCTGGGGTTGGAGAAGCAGACGTGCTGGGCCTATGTCGTTaGAAGCCTGGCACCGGTATT +
Preference number: 4 (lower is better)
Translates to: GTGWSRWWWVPGVGEADVLGLCR*KPGTGI
Trigger: AATACCGGTGCCAGGCTTCCAACGACATAGGCCCAG...CACGTCTGCTTCTCCAACCCCAGGCACCCACCACCATCTGCTCCATCCTGTGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR CCA 90 bp CGTGCCCAGGGAGCTGCCGGTGCCTTAGCATCTGAGCTGCAGCAGCTGAAGGAGTCTCACAGGACAAGGTaGCCTTCTTCCCCTCCATCA +
Preference number: 4 (lower is better)
Translates to: RAQGAAGALASELQQLKESHRTR*PSSPPS
Trigger: TGATGGAGGGGAAGAAGGCCACCTTGTCCTGTGAGA...CTCCTTCAGCTGCTGCAGCTCAGATGCTAAGGCACCGGCAGCTCCCTGGGCACG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
CDS-3UTR CCA 90 bp CAGGATGGAGCAGATGGTGGTGGGTGCCTGGGGTTGGAGAAGCAGACGTGGCACGAGGAGTGGAGGTCTTaGCCACTGGAGTCAAACCAG +
Preference number: 4 (lower is better)
Translates to: QDGADGGGCLGLEKQTWHEEWRS*PLESNQ
Trigger: CTGGTTTGACTCCAGTGGCCAAGACCTCCACTCCTC...GTGCCACGTCTGCTTCTCCAACCCCAGGCACCCACCACCATCTGCTCCATCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR CCA 90 bp CGTGCCCAGGGAGCTGCCGGTGCCTTAGCATCTGAGCTGCAGCAGCTGAAGGAGTCCAGTCTCAGTTTCTaGCCTGAGGAGTGGAGGTCT +
Preference number: 4 (lower is better)
Translates to: RAQGAAGALASELQQLKESSLSF*PEEWRS
Trigger: AGACCTCCACTCCTCAGGCCAGAAACTGAGACTGGA...CTCCTTCAGCTGCTGCAGCTCAGATGCTAAGGCACCGGCAGCTCCCTGGGCACG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
CDS-3UTR CCA 90 bp AGCAGGCTGGCCTCGAACTCAGAAATCCGCCCGCCTCTGCCTCCTGAGTGCTGGTCCAGTCTCAGTTTCTaGCCTGAGGAGTGGAGGTCT +
Preference number: 4 (lower is better)
Translates to: SRLASNSEIRPPLPPECWSSLSF*PEEWRS
Trigger: AGACCTCCACTCCTCAGGCCAGAAACTGAGACTGGA...CCAGCACTCAGGAGGCAGAGGCGGGCGGATTTCTGAGTTCGAGGCCAGCCTGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
CDS-3UTR TCA 90 bp CAGGATGGAGCAGATGGTGGTGGGTGCCTGGGGTTGGAGAAGCAGACGTGGCACGTTTCTCCGAGACATTaGGGTGAATGGGCTCCATCC +
Preference number: 4 (lower is better)
Translates to: QDGADGGGCLGLEKQTWHVSPRH*GEWAPS
Trigger: GGATGGAGCCCATTCACCTCAATGTCTCGGAGAAAC...GTGCCACGTCTGCTTCTCCAACCCCAGGCACCCACCACCATCTGCTCCATCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR TCA 90 bp CAGGATGGAGCAGATGGTGGTGGGTGCCTGGGGTTGGAGAAGCAGACGTGGCACTCCCATGTCACTTTCTaGATCCTCAGCACTCCGGGT +
Preference number: 4 (lower is better)
Translates to: QDGADGGGCLGLEKQTWHSHVTF*ILSTPG
Trigger: ACCCGGAGTGCTGAGGATTCAGAAAGTGACATGGGA...GTGCCACGTCTGCTTCTCCAACCCCAGGCACCCACCACCATCTGCTCCATCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR TCA 90 bp GACGTGGCACAATGCGTGAGGGAGGATCACCAGCCAGAGAAGGCCGGTCAGGTCTCCCATGTCACTTTCTaGATCCTCAGCACTCCGGGT +
Preference number: 4 (lower is better)
Translates to: DVAQCVREDHQPEKAGQVSHVTF*ILSTPG
Trigger: ACCCGGAGTGCTGAGGATTCAGAAAGTGACATGGGA...GACCTGACCGGCCTTCTCTGGCTGGTGATCCTCCCTCACGCATTGTGCCACGTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR TCA 90 bp CAGGGAGCTGCCGGTGCCTTAGCATCTGAGCTGCAGCAGCTGAAGGAGTTGTCTTGCAGGCAGCACAGCTaGCAGGCATGGAATCCCATG +
Preference number: 4 (lower is better)
Translates to: QGAAGALASELQQLKELSCRQHS*QAWNPM
Trigger: CATGGGATTCCATGCCTGTCAGCTGTGCTGCCTGCA...AGACAACTCCTTCAGCTGCTGCAGCTCAGATGCTAAGGCACCGGCAGCTCCCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
CDS-3UTR GCA 90 bp ATGGAGCAGATGGTGGTGGGTGCCTGGGGTTGGAGAAGCAGACGTGGCACAATGCCATCGTTCAGTCCCTaGGGTCATCCTCAACCCCAG +
Preference number: 4 (lower is better)
Translates to: MEQMVVGAWGWRSRRGTMPSFSP*GHPQPQ
Trigger: CTGGGGTTGAGGATGACCGCAGGGACTGAACGATGG...CATTGTGCCACGTCTGCTTCTCCAACCCCAGGCACCCACCACCATCTGCTCCAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR GCA 90 bp AGCAGGCTGGCCTCGAACTCAGAAATCCGCCCGCCTCTGCCTCCTGAGTGCTGGACCCAGACGGTTCTCTaGCAAGCAAGAGTAATTCCC +
Preference number: 4 (lower is better)
Translates to: SRLASNSEIRPPLPPECWTQTVL*QARVIP
Trigger: GGGAATTACTCTTGCTTGGCAGAGAACCGTCTGGGT...CCAGCACTCAGGAGGCAGAGGCGGGCGGATTTCTGAGTTCGAGGCCAGCCTGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
CDS-3UTR GCA 90 bp CAGGATGGAGCAGATGGTGGTGGGTGCCTGGGGTTGGAGAAGCAGACGTGGCACAGGTACCTCCCTTCCTaGACGAGACTCCCATTCTTC +
Preference number: 4 (lower is better)
Translates to: QDGADGGGCLGLEKQTWHRYLPS*TRLPFF
Trigger: GAAGAATGGGAGTCTCGTGCAGGAAGGGAGGTACCT...GTGCCACGTCTGCTTCTCCAACCCCAGGCACCCACCACCATCTGCTCCATCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR GCA 90 bp AGCAGATGGTGGTGGGTGCCTGGGGTTGGAGAAGCAGACGTGGCACAATGCGTGGCTCTGAGTAATGGATaGTCTCATCCTCCGGGCAGC +
Preference number: 4 (lower is better)
Translates to: SRWWWVPGVGEADVAQCVALSNG*SHPPGS
Trigger: GCTGCCCGGAGGATGAGAGCATCCATTACTCAGAGC...CACGCATTGTGCCACGTCTGCTTCTCCAACCCCAGGCACCCACCACCATCTGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR CCA 90 bp GTCCGTGCCCAGGGAGCTGCCGGTGCCTTAGCATCTGAGCTGCAGCAGCTGAAGACTTTGGAGGAGTGCTaGACTTGGCACTTCACACTC +
Preference number: 4 (lower is better)
Translates to: VRAQGAAGALASELQQLKTLEEC*TWHFTL
Trigger: GAGTGTGAAGTGCCAAGTCCAGCACTCCTCCAAAGT...CTTCAGCTGCTGCAGCTCAGATGCTAAGGCACCGGCAGCTCCCTGGGCACGGAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
ENSMUST00000190646.7
CDS-3UTR CCA 90 bp AGCAGATGGTGGTGGGTGCCTGGGGTTGGAGAAGCAGACGTGGCACAATGCGTGGCTCTGAGAGCACTTTaGAGGAGTGCTGGACTTGGC +
Preference number: 4 (lower is better)
Translates to: SRWWWVPGVGEADVAQCVALRAL*RSAGLG
Trigger: GCCAAGTCCAGCACTCCTCCAAAGTGCTCTCAGAGC...CACGCATTGTGCCACGTCTGCTTCTCCAACCCCAGGCACCCACCACCATCTGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR CCA 90 bp TATGTCCATTCCGTTCTGTCTGCTCAGCGTCCAGGACCCCCGAGGGAAGGCACCCTGGGCCTATGTCGTTaGAAGCCTGGCACCGGTATT +
Preference number: 4 (lower is better)
Translates to: YVHSVLSAQRPGPPREGTLGLCR*KPGTGI
Trigger: AATACCGGTGCCAGGCTTCCAACGACATAGGCCCAG...GGTGCCTTCCCTCGGGGGTCCTGGACGCTGAGCAGACAGAACGGAATGGACATA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR TCA 90 bp CCTGGGGTTGGAGAAGCAGACGTGGCACAATGCGTGAGGGAGGATCACCAGCCAGTTTCTCCGAGACATTaGGGTGAATGGGCTCCATCC +
Preference number: 4 (lower is better)
Translates to: PGVGEADVAQCVREDHQPVSPRH*GEWAPS
Trigger: GGATGGAGCCCATTCACCTCAATGTCTCGGAGAAAC...TGGCTGGTGATCCTCCCTCACGCATTGTGCCACGTCTGCTTCTCCAACCCCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR TCA 90 bp GCCGGTGCCTTAGCATCTGAGCTGCAGCAGCTGAAGGAGTTGTCTTCTTTAGGCTCCTGTTCCAGTTCCTaGTCCTCTAGGGGGCGCCCA +
Preference number: 4 (lower is better)
Translates to: AGALASELQQLKELSSLGSCSSS*SSRGRP
Trigger: TGGGCGCCCCCTAGAGGATCAGGAACTGGAACAGGA...GCCTAAAGAAGACAACTCCTTCAGCTGCTGCAGCTCAGATGCTAAGGCACCGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
ENSMUST00000190646.7
CDS-3UTR TCA 90 bp TCATCAAGGCAGGAGGATGGCAGCATCCAGGTTGGCATGGTGCAGGAGGAGCTGGACTGTAGTAGACAGTaGGGGTGCTGGGTGGTGACT +
Preference number: 4 (lower is better)
Translates to: SSRQEDGSIQVGMVQEELDCSRQ*GCWVVT
Trigger: AGTCACCACCCAGCACCCTCACTGTCTACTACAGTC...CAGCTCCTCCTGCACCATGCCAACCTGGATGCTGCCATCCTCCTGCCTTGATGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019248.13
CDS-3UTR GCA 90 bp GGCACAGGATGGAGCAGATGGTGGTGGGTGCCTGGGGTTGGAGAAGCAGACGTGAGCACTTTGGAGGAGTaGTGGACTTGGCACTTCACA +
Preference number: 4 (lower is better)
Translates to: GTGWSRWWWVPGVGEADVSTLEE*WTWHFT
Trigger: TGTGAAGTGCCAAGTCCAGCACTCCTCCAAAGTGCT...CACGTCTGCTTCTCCAACCCCAGGCACCCACCACCATCTGCTCCATCCTGTGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR GCA 90 bp TCTGCTCAGCGTCCAGGACCCCCGAGGGAAGGCACCATCTCCACAGAAGGTCCAGAAGCCCCTGCTGGCTaGGGTTTTGCTTCCATTTTT +
Preference number: 4 (lower is better)
Translates to: SAQRPGPPREGTISTEGPEAPAG*GFASIF
Trigger: AAAAATGGAAGCAAAACCGCAGCCAGCAGGGGCTTC...TGGACCTTCTGTGGAGATGGTGCCTTCCCTCGGGGGTCCTGGACGCTGAGCAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR GCA 90 bp GCCGGTGCCTTAGCATCTGAGCTGCAGCAGCTGAAGGAGTTGTCTTCTTTAGGCAGGAGGAGCCTGTGTTaGTGGGGTCCCTGCATCTCC +
Preference number: 4 (lower is better)
Translates to: AGALASELQQLKELSSLGRRSLC*WGPCIS
Trigger: GGAGATGCAGGGACCCCAGCAACACAGGCTCCTCCT...GCCTAAAGAAGACAACTCCTTCAGCTGCTGCAGCTCAGATGCTAAGGCACCGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
CDS-3UTR GCA 90 bp AGCGTCCAGGACCCCCGAGGGAAGGCACCATCTCCACAGAAGGTCCAACATCTTGCTCTGAGTAATGGATaGTCTCATCCTCCGGGCAGC +
Preference number: 4 (lower is better)
Translates to: SVQDPRGKAPSPQKVQHLALSNG*SHPPGS
Trigger: GCTGCCCGGAGGATGAGAGCATCCATTACTCAGAGC...AAGATGTTGGACCTTCTGTGGAGATGGTGCCTTCCCTCGGGGGTCCTGGACGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR CCA 90 bp CGTGCCCAGGGAGCTGCCGGTGCCTTAGCATCTGAGCTGCAGCAGCTGAAGGAGTGTCCAGACGTGCCTTaGGTAGTGGAGTTTTGTACT +
Preference number: 4 (lower is better)
Translates to: RAQGAAGALASELQQLKECPDVP*VVEFCT
Trigger: AGTACAAAACTCCACTACCCAAGGCACGTCTGGACA...CTCCTTCAGCTGCTGCAGCTCAGATGCTAAGGCACCGGCAGCTCCCTGGGCACG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
ENSMUST00000190646.7
CDS-3UTR CCA 90 bp GTCCGTGCCCAGGGAGCTGCCGGTGCCTTAGCATCTGAGCTGCAGCAGCTGAAGGTACAGCTCAGACTCTaGGTCCTTCTCAGTCTTTGT +
Preference number: 4 (lower is better)
Translates to: VRAQGAAGALASELQQLKVQLRL*VLLSLC
Trigger: ACAAAGACTGAGAAGGACCCAGAGTCTGAGCTGTAC...CTTCAGCTGCTGCAGCTCAGATGCTAAGGCACCGGCAGCTCCCTGGGCACGGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
ENSMUST00000190646.7
CDS-3UTR CCA 90 bp AGCGTCCAGGACCCCCGAGGGAAGGCACCATCTCCACAGAAGGTCCAACATCTTGCTCTGAGAGCACTTTaGAGGAGTGCTGGACTTGGC +
Preference number: 4 (lower is better)
Translates to: SVQDPRGKAPSPQKVQHLALRAL*RSAGLG
Trigger: GCCAAGTCCAGCACTCCTCCAAAGTGCTCTCAGAGC...AAGATGTTGGACCTTCTGTGGAGATGGTGCCTTCCCTCGGGGGTCCTGGACGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR CCA 90 bp GTCCGTGCCCAGGGAGCTGCCGGTGCCTTAGCATCTGAGCTGCAGCAGCTGAAGGTCTCCTTCCAGGATTaGTGTGAAGCTCTGAATCAC +
Preference number: 4 (lower is better)
Translates to: VRAQGAAGALASELQQLKVSFQD*CEALNH
Trigger: GTGATTCAGAGCTTCACACCAATCCTGGAAGGAGAC...CTTCAGCTGCTGCAGCTCAGATGCTAAGGCACCGGCAGCTCCCTGGGCACGGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
CDS-3UTR CCA 90 bp CAGGGAGCTGCCGGTGCCTTAGCATCTGAGCTGCAGCAGCTGAAGGAGTTGTCTCTGTGCCTATCCCATTaGTCCCTTTGCAGCGGTAGG +
Preference number: 4 (lower is better)
Translates to: QGAAGALASELQQLKELSLCLSH*SLCSGR
Trigger: CCTACCGCTGCAAAGGGACCAATGGGATAGGCACAG...AGACAACTCCTTCAGCTGCTGCAGCTCAGATGCTAAGGCACCGGCAGCTCCCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
3UTR CAA 72 bp CCATTCTTCTTCCAGAAGAAGCGGACCTCTGCCGGGTaGCTCTCTGCGAAGTCGCATTGGAGGAGGACACGC +
Preference number: 4 (lower is better)
Translates to: PFFFQKKRTSAG*LSAKSHWRRTR
Trigger: GCGTGTCCTCCTCCAATGCGACTTCGCAGAGAGCAACCCGGCAGAGGTCCGCTTCTTCTGGAAGAAGAATGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000187989.7
ENSMUST00000190646.7
CDS-3UTR TCA 90 bp AGCGTCCAGGACCCCCGAGGGAAGGCACCATCTCCACAGAAGGTCCAACATCTTTCCCATGTCACTTTCTaGATCCTCAGCACTCCGGGT +
Preference number: 4 (lower is better)
Translates to: SVQDPRGKAPSPQKVQHLSHVTF*ILSTPG
Trigger: ACCCGGAGTGCTGAGGATTCAGAAAGTGACATGGGA...AAGATGTTGGACCTTCTGTGGAGATGGTGCCTTCCCTCGGGGGTCCTGGACGCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR TCA 90 bp GCCGGTGCCTTAGCATCTGAGCTGCAGCAGCTGAAGGAGTTGTCTTCTTTAGGCTGCAGGCAGCACAGCTaGCAGGCATGGAATCCCATG +
Preference number: 4 (lower is better)
Translates to: AGALASELQQLKELSSLGCRQHS*QAWNPM
Trigger: CATGGGATTCCATGCCTGTCAGCTGTGCTGCCTGCA...GCCTAAAGAAGACAACTCCTTCAGCTGCTGCAGCTCAGATGCTAAGGCACCGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
CDS-3UTR TCA 90 bp CCCGAGGGAAGGCACCATCTCCACAGAAGGTCCAACATCTTTGTAGAAGAAAAGCATGGTCCCCAGGGCTaGTGGACACACGCAGCCTCC +
Preference number: 4 (lower is better)
Translates to: PEGRHHLHRRSNIFVEEKHGPQG*WTHAAS
Trigger: GGAGGCTGCGTGTGTCCATCAGCCCTGGGGACCATG...CTTTTCTTCTACAAAGATGTTGGACCTTCTGTGGAGATGGTGCCTTCCCTCGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR CCA 90 bp AGCAGGCTGGCCTCGAACTCAGAAATCCGCCCGCCTCTGCCTCCTGAGTGCTGGGTCAGAGTGACACTTTaGGATTCCCGGATTTCTGAT +
Preference number: 4 (lower is better)
Translates to: SRLASNSEIRPPLPPECWVRVTL*DSRISD
Trigger: ATCAGAAATCCGGGAATCCCAAAGTGTCACTCTGAC...CCAGCACTCAGGAGGCAGAGGCGGGCGGATTTCTGAGTTCGAGGCCAGCCTGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
ENSMUST00000190646.7
CDS-3UTR CCA 90 bp AGCAGATGGTGGTGGGTGCCTGGGGTTGGAGAAGCAGACGTGGCACAATGCGTGACTTTGGAGGAGTGCTaGACTTGGCACTTCACACTC +
Preference number: 4 (lower is better)
Translates to: SRWWWVPGVGEADVAQCVTLEEC*TWHFTL
Trigger: GAGTGTGAAGTGCCAAGTCCAGCACTCCTCCAAAGT...CACGCATTGTGCCACGTCTGCTTCTCCAACCCCAGGCACCCACCACCATCTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR CCA 90 bp CCTGGGGTTGGAGAAGCAGACGTGGCACAATGCGTGAGGGAGGATCACCAGCCAACTTTGGAGGAGTGCTaGACTTGGCACTTCACACTC +
Preference number: 4 (lower is better)
Translates to: PGVGEADVAQCVREDHQPTLEEC*TWHFTL
Trigger: GAGTGTGAAGTGCCAAGTCCAGCACTCCTCCAAAGT...TGGCTGGTGATCCTCCCTCACGCATTGTGCCACGTCTGCTTCTCCAACCCCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR CCA 90 bp AGCAGGCTGGCCTCGAACTCAGAAATCCGCCCGCCTCTGCCTCCTGAGTGCTGGTTGTTGCACTTGGACTaGCCAGTGACTCACAAATCA +
Preference number: 4 (lower is better)
Translates to: SRLASNSEIRPPLPPECWLLHLD*PVTHKS
Trigger: TGATTTGTGAGTCACTGGCCAGTCCAAGTGCAACAA...CCAGCACTCAGGAGGCAGAGGCGGGCGGATTTCTGAGTTCGAGGCCAGCCTGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
CDS-3UTR CCA 90 bp CCTGGGGTTGGAGAAGCAGACGTGGCACAATGCGTGAGGGAGGATCACCAGCCAATGCGGAGCTTCTCTTaGGTGTCTCCAGGTATAGGT +
Preference number: 4 (lower is better)
Translates to: PGVGEADVAQCVREDHQPMRSFS*VSPGIG
Trigger: ACCTATACCTGGAGACACCCAAGAGAAGCTCCGCAT...TGGCTGGTGATCCTCCCTCACGCATTGTGCCACGTCTGCTTCTCCAACCCCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR CCA 90 bp CAGGGAGCTGCCGGTGCCTTAGCATCTGAGCTGCAGCAGCTGAAGGAGTTGTCTAGCTCTGAATCACTGTaGTCACCGCCTTGGGAGCAT +
Preference number: 4 (lower is better)
Translates to: QGAAGALASELQQLKELSSSESL*SPPWEH
Trigger: ATGCTCCCAAGGCGGTGACCACAGTGATTCAGAGCT...AGACAACTCCTTCAGCTGCTGCAGCTCAGATGCTAAGGCACCGGCAGCTCCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
CDS-3UTR CCA 90 bp GACGTGGCACAATGCGTGAGGGAGGATCACCAGCCAGAGAAGGCCGGTCAGGTCGTCTCCTTCCAGGATTaGTGTGAAGCTCTGAATCAC +
Preference number: 4 (lower is better)
Translates to: DVAQCVREDHQPEKAGQVVSFQD*CEALNH
Trigger: GTGATTCAGAGCTTCACACCAATCCTGGAAGGAGAC...GACCTGACCGGCCTTCTCTGGCTGGTGATCCTCCCTCACGCATTGTGCCACGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR CCA 90 bp CAGGGAGCTGCCGGTGCCTTAGCATCTGAGCTGCAGCAGCTGAAGGAGTTGTCTTCTCACAGGACAAGGTaGCCTTCTTCCCCTCCATCA +
Preference number: 4 (lower is better)
Translates to: QGAAGALASELQQLKELSSHRTR*PSSPPS
Trigger: TGATGGAGGGGAAGAAGGCCACCTTGTCCTGTGAGA...AGACAACTCCTTCAGCTGCTGCAGCTCAGATGCTAAGGCACCGGCAGCTCCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
CDS-3UTR CCA 90 bp AGCAGACGTGGCACAATGCGTGAGGGAGGATCACCAGCCAGAGAAGGCCGGTCACTTGCCGATGGTCTCTaGACTGTAGTAGACAGTGAG +
Preference number: 4 (lower is better)
Translates to: SRRGTMREGGSPAREGRSLADGL*TVVDSE
Trigger: CTCACTGTCTACTACAGTCCAGAGACCATCGGCAAG...TGACCGGCCTTCTCTGGCTGGTGATCCTCCCTCACGCATTGTGCCACGTCTGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
3UTR CAA 72 bp TTCAGGATGACAGGGAGGGCCCACGAACACTTGTGGTaGCAGGCAGCACAGCTGACAGGCATGGAATCCCAT +
Preference number: 4 (lower is better)
Translates to: FRMTGRAHEHLW*QAAQLTGMESH
Trigger: ATGGGATTCCATGCCTGTCAGCTGTGCTGCCTGCAACCACAAGTGTTCGTGGGCCCTCCCTGTCATCCTGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000187989.7
ENSMUST00000190646.7
CDS-3UTR TCA 90 bp CTTCTGTCCTTCCTGGGGATTTCTCCCCAGGGCCAGAAAGTGGGTAGTAAGATTTCCTGTTCCAGTTCCTaGTCCTCTAGGGGGCGCCCA +
Preference number: 4 (lower is better)
Translates to: LLSFLGISPQGQKVGSKISCSSS*SSRGRP
Trigger: TGGGCGCCCCCTAGAGGATCAGGAACTGGAACAGGA...AATCTTACTACCCACTTTCTGGCCCTGGGGAGAAATCCCCAGGAAGGACAGAAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR TCA 90 bp TTTCTCCCCAGGGCCAGAAAGTGGGTAGTAAGATTAGTGAACGGGGTAGAGTATCATGGTCCCCAGGGCTaGTGGACACACGCAGCCTCC +
Preference number: 4 (lower is better)
Translates to: FLPRARKWVVRLVNGVEYHGPQG*WTHAAS
Trigger: GGAGGCTGCGTGTGTCCATCAGCCCTGGGGACCATG...ATACTCTACCCCGTTCACTAATCTTACTACCCACTTTCTGGCCCTGGGGAGAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR GCA 90 bp CAGGGAGCTGCCGGTGCCTTAGCATCTGAGCTGCAGCAGCTGAAGGAGTTGTCTACCCAGACGGTTCTCTaGCAAGCAAGAGTAATTCCC +
Preference number: 4 (lower is better)
Translates to: QGAAGALASELQQLKELSTQTVL*QARVIP
Trigger: GGGAATTACTCTTGCTTGGCAGAGAACCGTCTGGGT...AGACAACTCCTTCAGCTGCTGCAGCTCAGATGCTAAGGCACCGGCAGCTCCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
CDS-3UTR GCA 90 bp CTTCTGTCCTTCCTGGGGATTTCTCCCCAGGGCCAGAAAGTGGGTAGTAAGATTCCAAGGCGACCCGCTTaGCGATGGTCTCTGGACTGT +
Preference number: 4 (lower is better)
Translates to: LLSFLGISPQGQKVGSKIPRRPA*RWSLDC
Trigger: ACAGTCCAGAGACCATCGGCAAGCGGGTCGCCTTGG...AATCTTACTACCCACTTTCTGGCCCTGGGGAGAAATCCCCAGGAAGGACAGAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR GCA 90 bp CAGGGAGCTGCCGGTGCCTTAGCATCTGAGCTGCAGCAGCTGAAGGAGTTGTCTGAAGCCCCTGCTGGCTaGGGTTTTGCTTCCATTTTT +
Preference number: 4 (lower is better)
Translates to: QGAAGALASELQQLKELSEAPAG*GFASIF
Trigger: AAAAATGGAAGCAAAACCGCAGCCAGCAGGGGCTTC...AGACAACTCCTTCAGCTGCTGCAGCTCAGATGCTAAGGCACCGGCAGCTCCCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
CDS-3UTR GCA 90 bp ACCCCCGAGGGAAGGCACCATCTCCACAGAAGGTCCAACATCTTTGTAGAAGAAAGGAGGAGCCTGTGTTaGTGGGGTCCCTGCATCTCC +
Preference number: 4 (lower is better)
Translates to: TPEGRHHLHRRSNIFVEERRSLC*WGPCIS
Trigger: GGAGATGCAGGGACCCCAGCAACACAGGCTCCTCCT...TTCTTCTACAAAGATGTTGGACCTTCTGTGGAGATGGTGCCTTCCCTCGGGGGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR GCA 90 bp GGATTTCTCCCCAGGGCCAGAAAGTGGGTAGTAAGATTAGTGAACGGGGTAGAGAGGAGGAGCCTGTGTTaGTGGGGTCCCTGCATCTCC +
Preference number: 4 (lower is better)
Translates to: GFLPRARKWVVRLVNGVERRSLC*WGPCIS
Trigger: GGAGATGCAGGGACCCCAGCAACACAGGCTCCTCCT...CTCTACCCCGTTCACTAATCTTACTACCCACTTTCTGGCCCTGGGGAGAAATCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR CCA 90 bp GGATGGAGCAGATGGTGGTGGGTGCCTGGGGTTGGAGAAGCAGACGTGGCACAATGTCCAGACGTGCCTTaGGTAGTGGAGTTTTGTACT +
Preference number: 4 (lower is better)
Translates to: GWSRWWWVPGVGEADVAQCPDVP*VVEFCT
Trigger: AGTACAAAACTCCACTACCCAAGGCACGTCTGGACA...TTGTGCCACGTCTGCTTCTCCAACCCCAGGCACCCACCACCATCTGCTCCATCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR CCA 90 bp AGCGTCCAGGACCCCCGAGGGAAGGCACCATCTCCACAGAAGGTCCAACATCTTCTTGCCGATGGTCTCTaGACTGTAGTAGACAGTGAG +
Preference number: 4 (lower is better)
Translates to: SVQDPRGKAPSPQKVQHLLADGL*TVVDSE
Trigger: CTCACTGTCTACTACAGTCCAGAGACCATCGGCAAG...AAGATGTTGGACCTTCTGTGGAGATGGTGCCTTCCCTCGGGGGTCCTGGACGCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR TCA 90 bp TCCTTACTTCTGTCCTTCCTGGGGATTTCTCCCCAGGGCCAGAAAGTGGGTAGTGTCCACAGGTCAGAGTaGCACTTTGGGATTCCCGGA +
Preference number: 4 (lower is better)
Translates to: SLLLSFLGISPQGQKVGSVHRSE*HFGIPG
Trigger: TCCGGGAATCCCAAAGTGTCACTCTGACCTGTGGAC...ACTACCCACTTTCTGGCCCTGGGGAGAAATCCCCAGGAAGGACAGAAGTAAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR TCA 90 bp CTCCCCAGGGCCAGAAAGTGGGTAGTAAGATTAGTGAACGGGGTAGAGTATCAATCCTGTTCCAGTTCCTaGTCCTCTAGGGGGCGCCCA +
Preference number: 4 (lower is better)
Translates to: LPRARKWVVRLVNGVEYQSCSSS*SSRGRP
Trigger: TGGGCGCCCCCTAGAGGATCAGGAACTGGAACAGGA...TTGATACTCTACCCCGTTCACTAATCTTACTACCCACTTTCTGGCCCTGGGGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR TCA 90 bp TTCTTTAGGCTCAAGAACCTGAAACAGCAGCTGCTACCCACCTCAGTGCTTGAGTCCTGTTCCAGTTCCTaGTCCTCTAGGGGGCGCCCA +
Preference number: 4 (lower is better)
Translates to: FFRLKNLKQQLLPTSVLESCSSS*SSRGRP
Trigger: TGGGCGCCCCCTAGAGGATCAGGAACTGGAACAGGA...CTCAAGCACTGAGGTGGGTAGCAGCTGCTGTTTCAGGTTCTTGAGCCTAAAGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000190646.7
CDS-3UTR TCA 90 bp GCCGGTGCCTTAGCATCTGAGCTGCAGCAGCTGAAGGAGTTGTCTTCTTTAGGCTCCCATGTCACTTTCTaGATCCTCAGCACTCCGGGT +
Preference number: 4 (lower is better)
Translates to: AGALASELQQLKELSSLGSHVTF*ILSTPG
Trigger: ACCCGGAGTGCTGAGGATTCAGAAAGTGACATGGGA...GCCTAAAGAAGACAACTCCTTCAGCTGCTGCAGCTCAGATGCTAAGGCACCGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
CDS-3UTR TCA 90 bp CTGTCCTTCCTGGGGATTTCTCCCCAGGGCCAGAAAGTGGGTAGTAAGATTAGTAGTGGACATTCAGGATaGCAGGGAGGGCCCACGAAC +
Preference number: 4 (lower is better)
Translates to: LSFLGISPQGQKVGSKISSGHSG*QGGPTN
Trigger: GTTCGTGGGCCCTCCCTGTCATCCTGAATGTCCACT...ACTAATCTTACTACCCACTTTCTGGCCCTGGGGAGAAATCCCCAGGAAGGACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR GCA 90 bp GGATTTCTCCCCAGGGCCAGAAAGTGGGTAGTAAGATTAGTGAACGGGGTAGAGCCATCGTTCAGTCCCTaGGGTCATCCTCAACCCCAG +
Preference number: 4 (lower is better)
Translates to: GFLPRARKWVVRLVNGVEPSFSP*GHPQPQ
Trigger: CTGGGGTTGAGGATGACCGCAGGGACTGAACGATGG...CTCTACCCCGTTCACTAATCTTACTACCCACTTTCTGGCCCTGGGGAGAAATCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR GCA 90 bp CCCGAGGGAAGGCACCATCTCCACAGAAGGTCCAACATCTTTGTAGAAGAAAAGAGGAGGAGCCTGTGTTaGTGGGGTCCCTGCATCTCC +
Preference number: 4 (lower is better)
Translates to: PEGRHHLHRRSNIFVEEKRRSLC*WGPCIS
Trigger: GGAGATGCAGGGACCCCAGCAACACAGGCTCCTCCT...CTTTTCTTCTACAAAGATGTTGGACCTTCTGTGGAGATGGTGCCTTCCCTCGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR GCA 90 bp TTCTGTCCTTCCTGGGGATTTCTCCCCAGGGCCAGAAAGTGGGTAGTAAGATTAAGGAGGAGCCTGTGTTaGTGGGGTCCCTGCATCTCC +
Preference number: 4 (lower is better)
Translates to: FCPSWGFLPRARKWVVRLRRSLC*WGPCIS
Trigger: GGAGATGCAGGGACCCCAGCAACACAGGCTCCTCCT...TAATCTTACTACCCACTTTCTGGCCCTGGGGAGAAATCCCCAGGAAGGACAGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR CCA 90 bp CAGGGAGCTGCCGGTGCCTTAGCATCTGAGCTGCAGCAGCTGAAGGAGTTGTCTTGTCCAGACGTGCCTTaGGTAGTGGAGTTTTGTACT +
Preference number: 4 (lower is better)
Translates to: QGAAGALASELQQLKELSCPDVP*VVEFCT
Trigger: AGTACAAAACTCCACTACCCAAGGCACGTCTGGACA...AGACAACTCCTTCAGCTGCTGCAGCTCAGATGCTAAGGCACCGGCAGCTCCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
ENSMUST00000190646.7
CDS-3UTR CCA 90 bp GGATGGAGCAGATGGTGGTGGGTGCCTGGGGTTGGAGAAGCAGACGTGGCACAAGTCAGAGTGACACTTTaGGATTCCCGGATTTCTGAT +
Preference number: 4 (lower is better)
Translates to: GWSRWWWVPGVGEADVAQVRVTL*DSRISD
Trigger: ATCAGAAATCCGGGAATCCCAAAGTGTCACTCTGAC...TTGTGCCACGTCTGCTTCTCCAACCCCAGGCACCCACCACCATCTGCTCCATCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR CCA 90 bp TTATATATGTCCATTCCGTTCTGTCTGCTCAGCGTCCAGGACCCCCGAGGGAAGCTGGGCCTATGTCGTTaGAAGCCTGGCACCGGTATT +
Preference number: 4 (lower is better)
Translates to: LYMSIPFCLLSVQDPRGKLGLCR*KPGTGI
Trigger: AATACCGGTGCCAGGCTTCCAACGACATAGGCCCAG...CTTCCCTCGGGGGTCCTGGACGCTGAGCAGACAGAACGGAATGGACATATATAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR CCA 90 bp ACAGCTGACAGGCATGGAATCCCATGTCACTTTCTGAATCCTCAGCACTCCGGGCTGGGCCTATGTCGTTaGAAGCCTGGCACCGGTATT +
Preference number: 4 (lower is better)
Translates to: TADRHGIPCHFLNPQHSGLGLCR*KPGTGI
Trigger: AATACCGGTGCCAGGCTTCCAACGACATAGGCCCAG...CCCGGAGTGCTGAGGATTCAGAAAGTGACATGGGATTCCATGCCTGTCAGCTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190646.7
CDS-3UTR CCA 90 bp AGCAGATGGTGGTGGGTGCCTGGGGTTGGAGAAGCAGACGTGGCACAATGCGTGTTGTTGCACTTGGACTaGCCAGTGACTCACAAATCA +
Preference number: 4 (lower is better)
Translates to: SRWWWVPGVGEADVAQCVLLHLD*PVTHKS
Trigger: TGATTTGTGAGTCACTGGCCAGTCCAAGTGCAACAA...CACGCATTGTGCCACGTCTGCTTCTCCAACCCCAGGCACCCACCACCATCTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR CCA 90 bp AGCGTCCAGGACCCCCGAGGGAAGGCACCATCTCCACAGAAGGTCCAACATCTTGTCTCCTTCCAGGATTaGTGTGAAGCTCTGAATCAC +
Preference number: 4 (lower is better)
Translates to: SVQDPRGKAPSPQKVQHLVSFQD*CEALNH
Trigger: GTGATTCAGAGCTTCACACCAATCCTGGAAGGAGAC...AAGATGTTGGACCTTCTGTGGAGATGGTGCCTTCCCTCGGGGGTCCTGGACGCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR CCA 90 bp TCCTTACTTCTGTCCTTCCTGGGGATTTCTCCCCAGGGCCAGAAAGTGGGTAGTCTGTGCCTATCCCATTaGTCCCTTTGCAGCGGTAGG +
Preference number: 4 (lower is better)
Translates to: SLLLSFLGISPQGQKVGSLCLSH*SLCSGR
Trigger: CCTACCGCTGCAAAGGGACCAATGGGATAGGCACAG...ACTACCCACTTTCTGGCCCTGGGGAGAAATCCCCAGGAAGGACAGAAGTAAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
3UTR CAA 72 bp TTGTCCAGACGTGCCTTGGGTAGTGGAGTTTTGTACTaGCAAGGAATCCTGATGCAGGCTCCCTCCCAGGCA +
Preference number: 4 (lower is better)
Translates to: LSRRALGSGVLY*QGILMQAPSQA
Trigger: TGCCTGGGAGGGAGCCTGCATCAGGATTCCTTGCAAGTACAAAACTCCACTACCCAAGGCACGTCTGGACAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187989.7
3UTR CAA 72 bp TTGAACCAAGACACCGCCACGGTCCTGAGTTTCGGGTaGCTGCTGTTAACCCGGCATGTCATGGTCACAGAA +
Preference number: 4 (lower is better)
Translates to: LNQDTATVLSFG*LLLTRHVMVTE
Trigger: TTCTGTGACCATGACATGCCGGGTTAACAGCAGCAACCCGAAACTCAGGACCGTGGCGGTGTCTTGGTTCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187989.7
CDS-3UTR TCA 90 bp TTGTACCTACAGACCAGGGTCACACTGTCTCCTTCCAGGATTGGTGTGAAGCTCGTCCACAGGTCAGAGTaGCACTTTGGGATTCCCGGA +
Preference number: 4 (lower is better)
Translates to: LYLQTRVTLSPSRIGVKLVHRSE*HFGIPG
Trigger: TCCGGGAATCCCAAAGTGTCACTCTGACCTGTGGAC...GAGCTTCACACCAATCCTGGAAGGAGACAGTGTGACCCTGGTCTGTAGGTACAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190646.7
CDS-3UTR TCA 90 bp GCAGTTATAATTTCCAGAATCTTCTGGGGAGACGGAGCCGAAGCTCAGGTACCTACGCACAGTGCGCTCTaGGAGCACTTTGGAGGAGTG +
Preference number: 4 (lower is better)
Translates to: AVIISRIFWGDGAEAQVPTHSAL*EHFGGV
Trigger: CACTCCTCCAAAGTGCTCTCAGAGCGCACTGTGCGT...AGGTACCTGAGCTTCGGCTCCGTCTCCCCAGAAGATTCTGGAAATTATAACTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190646.7
CDS-3UTR TCA 90 bp TTTCTCCCCAGGGCCAGAAAGTGGGTAGTAAGATTAGTGAACGGGGTAGAGTATTCCTGTTCCAGTTCCTaGTCCTCTAGGGGGCGCCCA +
Preference number: 4 (lower is better)
Translates to: FLPRARKWVVRLVNGVEYSCSSS*SSRGRP
Trigger: TGGGCGCCCCCTAGAGGATCAGGAACTGGAACAGGA...ATACTCTACCCCGTTCACTAATCTTACTACCCACTTTCTGGCCCTGGGGAGAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR TCA 90 bp AGCATAATGGACATCCAGCTTAGCTTCCTGGTCTATCTTTCCATGACCCAGACGTCCTGTTCCAGTTCCTaGTCCTCTAGGGGGCGCCCA +
Preference number: 4 (lower is better)
Translates to: SIMDIQLSFLVYLSMTQTSCSSS*SSRGRP
Trigger: TGGGCGCCCCCTAGAGGATCAGGAACTGGAACAGGA...CGTCTGGGTCATGGAAAGATAGACCAGGAAGCTAAGCTGGATGTCCATTATGCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000190455.2
ENSMUST00000190646.7
CDS-3UTR TCA 90 bp CGAGGGAAGGCACCATCTCCACAGAAGGTCCAACATCTTTGTAGAAGAAAAGCCAGTGGACATTCAGGATaGCAGGGAGGGCCCACGAAC +
Preference number: 4 (lower is better)
Translates to: RGKAPSPQKVQHLCRRKASGHSG*QGGPTN
Trigger: GTTCGTGGGCCCTCCCTGTCATCCTGAATGTCCACT...GGCTTTTCTTCTACAAAGATGTTGGACCTTCTGTGGAGATGGTGCCTTCCCTCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR TCA 90 bp GGATGGAGCAGATGGTGGTGGGTGCCTGGGGTTGGAGAAGCAGACGTGGCACAACTCCGATGGAGTTGTTaGCCATGCAGTTATAATTTC +
Preference number: 4 (lower is better)
Translates to: GWSRWWWVPGVGEADVAQLRWSC*PCSYNF
Trigger: GAAATTATAACTGCATGGTCAACAACTCCATCGGAG...TTGTGCCACGTCTGCTTCTCCAACCCCAGGCACCCACCACCATCTGCTCCATCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR TCA 90 bp GGTAGTAAGATTAGTGAACGGGGTAGAGTATCAAGGGGTCAGAGAAGAAGTGTTCATGGTCCCCAGGGCTaGTGGACACACGCAGCCTCC +
Preference number: 4 (lower is better)
Translates to: GSKISERGRVSRGQRRSVHGPQG*WTHAAS
Trigger: GGAGGCTGCGTGTGTCCATCAGCCCTGGGGACCATG...AACACTTCTTCTCTGACCCCTTGATACTCTACCCCGTTCACTAATCTTACTACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR TCA 90 bp CGAGGGAAGGCACCATCTCCACAGAAGGTCCAACATCTTTGTAGAAGAAAAGCCTCTCAGTTTCTGGCCTaGGGAGTGGAGGTCTTGGCC +
Preference number: 4 (lower is better)
Translates to: RGKAPSPQKVQHLCRRKASQFLA*GVEVLA
Trigger: GGCCAAGACCTCCACTCCTCAGGCCAGAAACTGAGA...GGCTTTTCTTCTACAAAGATGTTGGACCTTCTGTGGAGATGGTGCCTTCCCTCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR TCA 90 bp CTGTCCTTCCTGGGGATTTCTCCCCAGGGCCAGAAAGTGGGTAGTAAGATTAGTGACTGTAGTAGACAGTaGGGGTGCTGGGTGGTGACT +
Preference number: 4 (lower is better)
Translates to: LSFLGISPQGQKVGSKISDCSRQ*GCWVVT
Trigger: AGTCACCACCCAGCACCCTCACTGTCTACTACAGTC...ACTAATCTTACTACCCACTTTCTGGCCCTGGGGAGAAATCCCCAGGAAGGACAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR GCA 90 bp TCCAGGACCCCCGAGGGAAGGCACCATCTCCACAGAAGGTCCAACATCTTTGTAAGCACTTTGGAGGAGTaGTGGACTTGGCACTTCACA +
Preference number: 4 (lower is better)
Translates to: SRTPEGRHHLHRRSNIFVSTLEE*WTWHFT
Trigger: TGTGAAGTGCCAAGTCCAGCACTCCTCCAAAGTGCT...TACAAAGATGTTGGACCTTCTGTGGAGATGGTGCCTTCCCTCGGGGGTCCTGGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR GCA 90 bp GCTGATGGACACACGCAGCCTCCGAGGAGCATACAGCACTTGGAGGTTCCAGGCTCCTTGGTCACTGAATaGAGAATTAGCTTGGACATC +
Preference number: 4 (lower is better)
Translates to: ADGHTQPPRSIQHLEVPGSLVTE*RISLDI
Trigger: GATGTCCAAGCTAATTCTGCATTCAGTGACCAAGGA...GCCTGGAACCTCCAAGTGCTGTATGCTCCTCGGAGGCTGCGTGTGTCCATCAGC
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190646.7
CDS-3UTR GCA 90 bp TCCTTACTTCTGTCCTTCCTGGGGATTTCTCCCCAGGGCCAGAAAGTGGGTAGTAGGTACCTCCCTTCCTaGACGAGACTCCCATTCTTC +
Preference number: 4 (lower is better)
Translates to: SLLLSFLGISPQGQKVGSRYLPS*TRLPFF
Trigger: GAAGAATGGGAGTCTCGTGCAGGAAGGGAGGTACCT...ACTACCCACTTTCTGGCCCTGGGGAGAAATCCCCAGGAAGGACAGAAGTAAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR GCA 90 bp GTAGAAGAAAAGCCAACTGGGGACAGTGCCTCTTGCTTCCTTACTTCTGTCCTTCCAAGGCGACCCGCTTaGCGATGGTCTCTGGACTGT +
Preference number: 4 (lower is better)
Translates to: VEEKPTGDSASCFLTSVLPRRPA*RWSLDC
Trigger: ACAGTCCAGAGACCATCGGCAAGCGGGTCGCCTTGG...AAGGACAGAAGTAAGGAAGCAAGAGGCACTGTCCCCAGTTGGCTTTTCTTCTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR GCA 90 bp TTTCCAATACAGGGTTTCCTTGAAAAACCCTGGCTGTCCTGGAACCCACTCTGTCCAAGGCGACCCGCTTaGCGATGGTCTCTGGACTGT +
Preference number: 4 (lower is better)
Translates to: FPIQGFLEKPWLSWNPLCPRRPA*RWSLDC
Trigger: ACAGTCCAGAGACCATCGGCAAGCGGGTCGCCTTGG...ACAGAGTGGGTTCCAGGACAGCCAGGGTTTTTCAAGGAAACCCTGTATTGGAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
CDS-3UTR CCA 90 bp TTATATATGTCCATTCCGTTCTGTCTGCTCAGCGTCCAGGACCCCCGAGGGAAGCAGGCAAAGAGGGTTTaGGGATGGTCAACGGTCCAA +
Preference number: 4 (lower is better)
Translates to: LYMSIPFCLLSVQDPRGKQAKRV*GWSTVQ
Trigger: TTGGACCGTTGACCATCCCCAAACCCTCTTTGCCTG...CTTCCCTCGGGGGTCCTGGACGCTGAGCAGACAGAACGGAATGGACATATATAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR CCA 90 bp GGATTTCTCCCCAGGGCCAGAAAGTGGGTAGTAAGATTAGTGAACGGGGTAGAGGCTCTGAGAGCACTTTaGAGGAGTGCTGGACTTGGC +
Preference number: 4 (lower is better)
Translates to: GFLPRARKWVVRLVNGVEALRAL*RSAGLG
Trigger: GCCAAGTCCAGCACTCCTCCAAAGTGCTCTCAGAGC...CTCTACCCCGTTCACTAATCTTACTACCCACTTTCTGGCCCTGGGGAGAAATCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR CCA 90 bp CTTCTGTCCTTCCTGGGGATTTCTCCCCAGGGCCAGAAAGTGGGTAGTAAGATTCTGGGCCTATGTCGTTaGAAGCCTGGCACCGGTATT +
Preference number: 4 (lower is better)
Translates to: LLSFLGISPQGQKVGSKILGLCR*KPGTGI
Trigger: AATACCGGTGCCAGGCTTCCAACGACATAGGCCCAG...AATCTTACTACCCACTTTCTGGCCCTGGGGAGAAATCCCCAGGAAGGACAGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR CCA 90 bp CTGAATCACTGTGGTCACCGCCTTGGGAGCATAATGGACATCCAGCTTAGCTTCCTGGGCCTATGTCGTTaGAAGCCTGGCACCGGTATT +
Preference number: 4 (lower is better)
Translates to: LNHCGHRLGSIMDIQLSFLGLCR*KPGTGI
Trigger: AATACCGGTGCCAGGCTTCCAACGACATAGGCCCAG...GAAGCTAAGCTGGATGTCCATTATGCTCCCAAGGCGGTGACCACAGTGATTCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190455.2
ENSMUST00000190646.7
CDS-3UTR CCA 90 bp CTTCTGTCCTTCCTGGGGATTTCTCCCCAGGGCCAGAAAGTGGGTAGTAAGATTGAGGAGTGGAGGTCTTaGCCACTGGAGTCAAACCAG +
Preference number: 4 (lower is better)
Translates to: LLSFLGISPQGQKVGSKIEEWRS*PLESNQ
Trigger: CTGGTTTGACTCCAGTGGCCAAGACCTCCACTCCTC...AATCTTACTACCCACTTTCTGGCCCTGGGGAGAAATCCCCAGGAAGGACAGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
3UTR CAA 72 bp AGGATGTTGTCCAGACGTGCCTTGGGTAGTGGAGTTTaGTACTTGCAAGGAATCCTGATGCAGGCTCCCTCC +
Preference number: 4 (lower is better)
Translates to: RMLSRRALGSGV*YLQGILMQAPS
Trigger: GGAGGGAGCCTGCATCAGGATTCCTTGCAAGTACAAAACTCCACTACCCAAGGCACGTCTGGACAACATCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187989.7
CDS-3UTR TCA 90 bp TCCTTCCTGGGGATTTCTCCCCAGGGCCAGAAAGTGGGTAGTAAGATTAGTGAAGTCCACAGGTCAGAGTaGCACTTTGGGATTCCCGGA +
Preference number: 4 (lower is better)
Translates to: SFLGISPQGQKVGSKISEVHRSE*HFGIPG
Trigger: TCCGGGAATCCCAAAGTGTCACTCTGACCTGTGGAC...TTCACTAATCTTACTACCCACTTTCTGGCCCTGGGGAGAAATCCCCAGGAAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR TCA 90 bp TTTCTCCCCAGGGCCAGAAAGTGGGTAGTAAGATTAGTGAACGGGGTAGAGTATACGCACAGTGCGCTCTaGGAGCACTTTGGAGGAGTG +
Preference number: 4 (lower is better)
Translates to: FLPRARKWVVRLVNGVEYTHSAL*EHFGGV
Trigger: CACTCCTCCAAAGTGCTCTCAGAGCGCACTGTGCGT...ATACTCTACCCCGTTCACTAATCTTACTACCCACTTTCTGGCCCTGGGGAGAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR TCA 90 bp GTAGAAGAAAAGCCAACTGGGGACAGTGCCTCTTGCTTCCTTACTTCTGTCCTTTGCAGGCAGCACAGCTaGCAGGCATGGAATCCCATG +
Preference number: 4 (lower is better)
Translates to: VEEKPTGDSASCFLTSVLCRQHS*QAWNPM
Trigger: CATGGGATTCCATGCCTGTCAGCTGTGCTGCCTGCA...AAGGACAGAAGTAAGGAAGCAAGAGGCACTGTCCCCAGTTGGCTTTTCTTCTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR TCA 90 bp GCAGCTGAAGGAGTTGTCTTCTTTAGGCTCAAGAACCTGAAACAGCAGCTGCTATGCAGGCAGCACAGCTaGCAGGCATGGAATCCCATG +
Preference number: 4 (lower is better)
Translates to: AAEGVVFFRLKNLKQQLLCRQHS*QAWNPM
Trigger: CATGGGATTCCATGCCTGTCAGCTGTGCTGCCTGCA...TAGCAGCTGCTGTTTCAGGTTCTTGAGCCTAAAGAAGACAACTCCTTCAGCTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
CDS-3UTR TCA 90 bp CAGGGAGCTGCCGGTGCCTTAGCATCTGAGCTGCAGCAGCTGAAGGAGTTGTCTCTCCGATGGAGTTGTTaGCCATGCAGTTATAATTTC +
Preference number: 4 (lower is better)
Translates to: QGAAGALASELQQLKELSLRWSC*PCSYNF
Trigger: GAAATTATAACTGCATGGTCAACAACTCCATCGGAG...AGACAACTCCTTCAGCTGCTGCAGCTCAGATGCTAAGGCACCGGCAGCTCCCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
CDS-3UTR TCA 90 bp GCAGCTGAAGGAGTTGTCTTCTTTAGGCTCAAGAACCTGAAACAGCAGCTGCTATCTCAGTTTCTGGCCTaGGGAGTGGAGGTCTTGGCC +
Preference number: 4 (lower is better)
Translates to: AAEGVVFFRLKNLKQQLLSQFLA*GVEVLA
Trigger: GGCCAAGACCTCCACTCCTCAGGCCAGAAACTGAGA...TAGCAGCTGCTGTTTCAGGTTCTTGAGCCTAAAGAAGACAACTCCTTCAGCTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
CDS-3UTR TCA 90 bp GAAGTGTTAGTGACGATTACAACAGGAACACATCCAGCTGCAGTGAGGCACAGGGACTGTAGTAGACAGTaGGGGTGCTGGGTGGTGACT +
Preference number: 4 (lower is better)
Translates to: EVLVTITTGTHPAAVRHRDCSRQ*GCWVVT
Trigger: AGTCACCACCCAGCACCCTCACTGTCTACTACAGTC...CCTGTGCCTCACTGCAGCTGGATGTGTTCCTGTTGTAATCGTCACTAACACTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR TCA 90 bp CCCGAGGGAAGGCACCATCTCCACAGAAGGTCCAACATCTTTGTAGAAGAAAAGGACTGTAGTAGACAGTaGGGGTGCTGGGTGGTGACT +
Preference number: 4 (lower is better)
Translates to: PEGRHHLHRRSNIFVEEKDCSRQ*GCWVVT
Trigger: AGTCACCACCCAGCACCCTCACTGTCTACTACAGTC...CTTTTCTTCTACAAAGATGTTGGACCTTCTGTGGAGATGGTGCCTTCCCTCGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR GCA 90 bp TTATATATGTCCATTCCGTTCTGTCTGCTCAGCGTCCAGGACCCCCGAGGGAAGACCCAGACGGTTCTCTaGCAAGCAAGAGTAATTCCC +
Preference number: 4 (lower is better)
Translates to: LYMSIPFCLLSVQDPRGKTQTVL*QARVIP
Trigger: GGGAATTACTCTTGCTTGGCAGAGAACCGTCTGGGT...CTTCCCTCGGGGGTCCTGGACGCTGAGCAGACAGAACGGAATGGACATATATAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR GCA 90 bp ACCCCCGAGGGAAGGCACCATCTCCACAGAAGGTCCAACATCTTTGTAGAAGAAAGGTACCTCCCTTCCTaGACGAGACTCCCATTCTTC +
Preference number: 4 (lower is better)
Translates to: TPEGRHHLHRRSNIFVEERYLPS*TRLPFF
Trigger: GAAGAATGGGAGTCTCGTGCAGGAAGGGAGGTACCT...TTCTTCTACAAAGATGTTGGACCTTCTGTGGAGATGGTGCCTTCCCTCGGGGGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR CCA 90 bp ACCCCCGAGGGAAGGCACCATCTCCACAGAAGGTCCAACATCTTTGTAGAAGAACAGGCAAAGAGGGTTTaGGGATGGTCAACGGTCCAA +
Preference number: 4 (lower is better)
Translates to: TPEGRHHLHRRSNIFVEEQAKRV*GWSTVQ
Trigger: TTGGACCGTTGACCATCCCCAAACCCTCTTTGCCTG...TTCTTCTACAAAGATGTTGGACCTTCTGTGGAGATGGTGCCTTCCCTCGGGGGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR CCA 90 bp TACAACAGGAACACATCCAGCTGCAGTGAGGCACAGGATGGAGCAGATGGTGGTACTTTGGAGGAGTGCTaGACTTGGCACTTCACACTC +
Preference number: 4 (lower is better)
Translates to: YNRNTSSCSEAQDGADGGTLEEC*TWHFTL
Trigger: GAGTGTGAAGTGCCAAGTCCAGCACTCCTCCAAAGT...ACCACCATCTGCTCCATCCTGTGCCTCACTGCAGCTGGATGTGTTCCTGTTGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR CCA 90 bp TTATATATGTCCATTCCGTTCTGTCTGCTCAGCGTCCAGGACCCCCGAGGGAAGATGCGGAGCTTCTCTTaGGTGTCTCCAGGTATAGGT +
Preference number: 4 (lower is better)
Translates to: LYMSIPFCLLSVQDPRGKMRSFS*VSPGIG
Trigger: ACCTATACCTGGAGACACCCAAGAGAAGCTCCGCAT...CTTCCCTCGGGGGTCCTGGACGCTGAGCAGACAGAACGGAATGGACATATATAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR CCA 90 bp CTGTCCTTCCTGGGGATTTCTCCCCAGGGCCAGAAAGTGGGTAGTAAGATTAGTAGCTCTGAATCACTGTaGTCACCGCCTTGGGAGCAT +
Preference number: 4 (lower is better)
Translates to: LSFLGISPQGQKVGSKISSSESL*SPPWEH
Trigger: ATGCTCCCAAGGCGGTGACCACAGTGATTCAGAGCT...ACTAATCTTACTACCCACTTTCTGGCCCTGGGGAGAAATCCCCAGGAAGGACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR TCA 90 bp TTCTGTCCTTCCTGGGGATTTCTCCCCAGGGCCAGAAAGTGGGTAGTAAGATTAGTTTCTCCGAGACATTaGGGTGAATGGGCTCCATCC +
Preference number: 4 (lower is better)
Translates to: FCPSWGFLPRARKWVVRLVSPRH*GEWAPS
Trigger: GGATGGAGCCCATTCACCTCAATGTCTCGGAGAAAC...TAATCTTACTACCCACTTTCTGGCCCTGGGGAGAAATCCCCAGGAAGGACAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR TCA 90 bp CTTTGTAGAAGAAAAGCCAACTGGGGACAGTGCCTCTTGCTTCCTTACTTCTGTACGCACAGTGCGCTCTaGGAGCACTTTGGAGGAGTG +
Preference number: 4 (lower is better)
Translates to: LCRRKANWGQCLLLPYFCTHSAL*EHFGGV
Trigger: CACTCCTCCAAAGTGCTCTCAGAGCGCACTGTGCGT...ACAGAAGTAAGGAAGCAAGAGGCACTGTCCCCAGTTGGCTTTTCTTCTACAAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR TCA 90 bp CTTATTGAATTATATATGTCCATTCCGTTCTGTCTGCTCAGCGTCCAGGACCCCTCTCAGTTTCTGGCCTaGGGAGTGGAGGTCTTGGCC +
Preference number: 4 (lower is better)
Translates to: LIELYMSIPFCLLSVQDPSQFLA*GVEVLA
Trigger: GGCCAAGACCTCCACTCCTCAGGCCAGAAACTGAGA...GGGGTCCTGGACGCTGAGCAGACAGAACGGAATGGACATATATAATTCAATAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR TCA 90 bp GCAGCTGAAGGAGTTGTCTTCTTTAGGCTCAAGAACCTGAAACAGCAGCTGCTAGACTGTAGTAGACAGTaGGGGTGCTGGGTGGTGACT +
Preference number: 4 (lower is better)
Translates to: AAEGVVFFRLKNLKQQLLDCSRQ*GCWVVT
Trigger: AGTCACCACCCAGCACCCTCACTGTCTACTACAGTC...TAGCAGCTGCTGTTTCAGGTTCTTGAGCCTAAAGAAGACAACTCCTTCAGCTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
CDS-3UTR GCA 90 bp ATTTCTCCCCAGGGCCAGAAAGTGGGTAGTAAGATTAGTGAACGGGGTAGAGTAGCTCTGAGTAATGGATaGTCTCATCCTCCGGGCAGC +
Preference number: 4 (lower is better)
Translates to: ISPQGQKVGSKISERGRVALSNG*SHPPGS
Trigger: GCTGCCCGGAGGATGAGAGCATCCATTACTCAGAGC...TACTCTACCCCGTTCACTAATCTTACTACCCACTTTCTGGCCCTGGGGAGAAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR GCA 90 bp AGTGTTAGTGACGATTACAACAGGAACACATCCAGCTGCAGTGAGGCACAGGATGCTCTGAGTAATGGATaGTCTCATCCTCCGGGCAGC +
Preference number: 4 (lower is better)
Translates to: SVSDDYNRNTSSCSEAQDALSNG*SHPPGS
Trigger: GCTGCCCGGAGGATGAGAGCATCCATTACTCAGAGC...ATCCTGTGCCTCACTGCAGCTGGATGTGTTCCTGTTGTAATCGTCACTAACACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR CCA 90 bp GACCCCCGAGGGAAGGCACCATCTCCACAGAAGGTCCAACATCTTTGTAGAAGATGTCCAGACGTGCCTTaGGTAGTGGAGTTTTGTACT +
Preference number: 4 (lower is better)
Translates to: DPRGKAPSPQKVQHLCRRCPDVP*VVEFCT
Trigger: AGTACAAAACTCCACTACCCAAGGCACGTCTGGACA...TCTTCTACAAAGATGTTGGACCTTCTGTGGAGATGGTGCCTTCCCTCGGGGGTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR CCA 90 bp GTAGAAGAAAAGCCAACTGGGGACAGTGCCTCTTGCTTCCTTACTTCTGTCCTTGCTCTGAGAGCACTTTaGAGGAGTGCTGGACTTGGC +
Preference number: 4 (lower is better)
Translates to: VEEKPTGDSASCFLTSVLALRAL*RSAGLG
Trigger: GCCAAGTCCAGCACTCCTCCAAAGTGCTCTCAGAGC...AAGGACAGAAGTAAGGAAGCAAGAGGCACTGTCCCCAGTTGGCTTTTCTTCTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR CCA 90 bp GCAGCTGAAGGAGTTGTCTTCTTTAGGCTCAAGAACCTGAAACAGCAGCTGCTAGCTCTGAGAGCACTTTaGAGGAGTGCTGGACTTGGC +
Preference number: 4 (lower is better)
Translates to: AAEGVVFFRLKNLKQQLLALRAL*RSAGLG
Trigger: GCCAAGTCCAGCACTCCTCCAAAGTGCTCTCAGAGC...TAGCAGCTGCTGTTTCAGGTTCTTGAGCCTAAAGAAGACAACTCCTTCAGCTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
ENSMUST00000190646.7
CDS-3UTR CCA 90 bp ATTTCTCCCCAGGGCCAGAAAGTGGGTAGTAAGATTAGTGAACGGGGTAGAGTAGAGGAGTGGAGGTCTTaGCCACTGGAGTCAAACCAG +
Preference number: 4 (lower is better)
Translates to: ISPQGQKVGSKISERGRVEEWRS*PLESNQ
Trigger: CTGGTTTGACTCCAGTGGCCAAGACCTCCACTCCTC...TACTCTACCCCGTTCACTAATCTTACTACCCACTTTCTGGCCCTGGGGAGAAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR CCA 90 bp GCAGCTGAAGGAGTTGTCTTCTTTAGGCTCAAGAACCTGAAACAGCAGCTGCTAGAGGAGTGGAGGTCTTaGCCACTGGAGTCAAACCAG +
Preference number: 4 (lower is better)
Translates to: AAEGVVFFRLKNLKQQLLEEWRS*PLESNQ
Trigger: CTGGTTTGACTCCAGTGGCCAAGACCTCCACTCCTC...TAGCAGCTGCTGTTTCAGGTTCTTGAGCCTAAAGAAGACAACTCCTTCAGCTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
CDS-3UTR CCA 90 bp TTTCCAATACAGGGTTTCCTTGAAAAACCCTGGCTGTCCTGGAACCCACTCTGTGAGGAGTGGAGGTCTTaGCCACTGGAGTCAAACCAG +
Preference number: 4 (lower is better)
Translates to: FPIQGFLEKPWLSWNPLCEEWRS*PLESNQ
Trigger: CTGGTTTGACTCCAGTGGCCAAGACCTCCACTCCTC...ACAGAGTGGGTTCCAGGACAGCCAGGGTTTTTCAAGGAAACCCTGTATTGGAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
CDS-3UTR CCA 90 bp CCCGAGGGAAGGCACCATCTCCACAGAAGGTCCAACATCTTTGTAGAAGAAAAGTCCAGTCTCAGTTTCTaGCCTGAGGAGTGGAGGTCT +
Preference number: 4 (lower is better)
Translates to: PEGRHHLHRRSNIFVEEKSSLSF*PEEWRS
Trigger: AGACCTCCACTCCTCAGGCCAGAAACTGAGACTGGA...CTTTTCTTCTACAAAGATGTTGGACCTTCTGTGGAGATGGTGCCTTCCCTCGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR CCA 90 bp TTTCCAATACAGGGTTTCCTTGAAAAACCCTGGCTGTCCTGGAACCCACTCTGTCTGTGCCTATCCCATTaGTCCCTTTGCAGCGGTAGG +
Preference number: 4 (lower is better)
Translates to: FPIQGFLEKPWLSWNPLCLCLSH*SLCSGR
Trigger: CCTACCGCTGCAAAGGGACCAATGGGATAGGCACAG...ACAGAGTGGGTTCCAGGACAGCCAGGGTTTTTCAAGGAAACCCTGTATTGGAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
CDS-3UTR CCA 90 bp GGATTTCTCCCCAGGGCCAGAAAGTGGGTAGTAAGATTAGTGAACGGGGTAGAGCTTGCCGATGGTCTCTaGACTGTAGTAGACAGTGAG +
Preference number: 4 (lower is better)
Translates to: GFLPRARKWVVRLVNGVELADGL*TVVDSE
Trigger: CTCACTGTCTACTACAGTCCAGAGACCATCGGCAAG...CTCTACCCCGTTCACTAATCTTACTACCCACTTTCTGGCCCTGGGGAGAAATCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR CCA 90 bp ACCCCCGAGGGAAGGCACCATCTCCACAGAAGGTCCAACATCTTTGTAGAAGAACTTGCCGATGGTCTCTaGACTGTAGTAGACAGTGAG +
Preference number: 4 (lower is better)
Translates to: TPEGRHHLHRRSNIFVEELADGL*TVVDSE
Trigger: CTCACTGTCTACTACAGTCCAGAGACCATCGGCAAG...TTCTTCTACAAAGATGTTGGACCTTCTGTGGAGATGGTGCCTTCCCTCGGGGGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
3UTR CAA 72 bp ATGCCACGGGGAGACTTTAGGGATGCGGAGCTTCTCTaGGGTGTCTCCAGGTATAGGTTTCCTGTTGTGATA +
Preference number: 4 (lower is better)
Translates to: MPRGDFRDAELL*GVSRYRFPVVI
Trigger: TATCACAACAGGAAACCTATACCTGGAGACACCCAAGAGAAGCTCCGCATCCCTAAAGTCTCCCCGTGGCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000187989.7
ENSMUST00000190646.7
3UTR CAA 72 bp AGCTCAGACTCTGGGTCCTTCTCAGTCTTTGTGGCGTaGTACAGGACAGTTCCTGTGAATTTCTTGGTGGCC +
Preference number: 4 (lower is better)
Translates to: SSDSGSFSVFVA*YRTVPVNFLVA
Trigger: GGCCACCAAGAAATTCACAGGAACTGTCCTGTACAACGCCACAAAGACTGAGAAGGACCCAGAGTCTGAGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187989.7
3UTR CAA 72 bp TTAACATCCAGACGCACAGTGCGCTCTGAGAGCACTTaGGAGGAGTGCTGGACTTGGCACTTCACACTCTTT +
Preference number: 4 (lower is better)
Translates to: LTSRRTVRSEST*EECWTWHFTLF
Trigger: AAAGAGTGTGAAGTGCCAAGTCCAGCACTCCTCCAAAGTGCTCTCAGAGCGCACTGTGCGTCTGGATGTTAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187989.7
CDS-3UTR TCA 90 bp GTAGAAGAAAAGCCAACTGGGGACAGTGCCTCTTGCTTCCTTACTTCTGTCCTTTCCGAGACATTGAGGTaGATGGGCTCCATCCATCGT +
Preference number: 4 (lower is better)
Translates to: VEEKPTGDSASCFLTSVLSETLR*MGSIHR
Trigger: ACGATGGATGGAGCCCATTCACCTCAATGTCTCGGA...AAGGACAGAAGTAAGGAAGCAAGAGGCACTGTCCCCAGTTGGCTTTTCTTCTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR TCA 90 bp GCAGCTGAAGGAGTTGTCTTCTTTAGGCTCAAGAACCTGAAACAGCAGCTGCTATCCGAGACATTGAGGTaGATGGGCTCCATCCATCGT +
Preference number: 4 (lower is better)
Translates to: AAEGVVFFRLKNLKQQLLSETLR*MGSIHR
Trigger: ACGATGGATGGAGCCCATTCACCTCAATGTCTCGGA...TAGCAGCTGCTGTTTCAGGTTCTTGAGCCTAAAGAAGACAACTCCTTCAGCTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
ENSMUST00000190646.7
CDS-3UTR TCA 90 bp TTTCTCCCCAGGGCCAGAAAGTGGGTAGTAAGATTAGTGAACGGGGTAGAGTATGTTTCTCCGAGACATTaGGGTGAATGGGCTCCATCC +
Preference number: 4 (lower is better)
Translates to: FLPRARKWVVRLVNGVEYVSPRH*GEWAPS
Trigger: GGATGGAGCCCATTCACCTCAATGTCTCGGAGAAAC...ATACTCTACCCCGTTCACTAATCTTACTACCCACTTTCTGGCCCTGGGGAGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR TCA 90 bp ATTTCTCCCCAGGGCCAGAAAGTGGGTAGTAAGATTAGTGAACGGGGTAGAGTAGTTTCTCCGAGACATTaGGGTGAATGGGCTCCATCC +
Preference number: 4 (lower is better)
Translates to: ISPQGQKVGSKISERGRVVSPRH*GEWAPS
Trigger: GGATGGAGCCCATTCACCTCAATGTCTCGGAGAAAC...TACTCTACCCCGTTCACTAATCTTACTACCCACTTTCTGGCCCTGGGGAGAAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR TCA 90 bp GCAGCTGAAGGAGTTGTCTTCTTTAGGCTCAAGAACCTGAAACAGCAGCTGCTAGTTTCTCCGAGACATTaGGGTGAATGGGCTCCATCC +
Preference number: 4 (lower is better)
Translates to: AAEGVVFFRLKNLKQQLLVSPRH*GEWAPS
Trigger: GGATGGAGCCCATTCACCTCAATGTCTCGGAGAAAC...TAGCAGCTGCTGTTTCAGGTTCTTGAGCCTAAAGAAGACAACTCCTTCAGCTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
ENSMUST00000190646.7
CDS-3UTR TCA 90 bp GGTAGTAAGATTAGTGAACGGGGTAGAGTATCAAGGGGTCAGAGAAGAAGTGTTACGCACAGTGCGCTCTaGGAGCACTTTGGAGGAGTG +
Preference number: 4 (lower is better)
Translates to: GSKISERGRVSRGQRRSVTHSAL*EHFGGV
Trigger: CACTCCTCCAAAGTGCTCTCAGAGCGCACTGTGCGT...AACACTTCTTCTCTGACCCCTTGATACTCTACCCCGTTCACTAATCTTACTACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR TCA 90 bp GCAGCTGAAGGAGTTGTCTTCTTTAGGCTCAAGAACCTGAAACAGCAGCTGCTATCCCATGTCACTTTCTaGATCCTCAGCACTCCGGGT +
Preference number: 4 (lower is better)
Translates to: AAEGVVFFRLKNLKQQLLSHVTF*ILSTPG
Trigger: ACCCGGAGTGCTGAGGATTCAGAAAGTGACATGGGA...TAGCAGCTGCTGTTTCAGGTTCTTGAGCCTAAAGAAGACAACTCCTTCAGCTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
CDS-3UTR GCA 90 bp GAAGTGTTAGTGACGATTACAACAGGAACACATCCAGCTGCAGTGAGGCACAGGAGCACTTTGGAGGAGTaGTGGACTTGGCACTTCACA +
Preference number: 4 (lower is better)
Translates to: EVLVTITTGTHPAAVRHRSTLEE*WTWHFT
Trigger: TGTGAAGTGCCAAGTCCAGCACTCCTCCAAAGTGCT...CCTGTGCCTCACTGCAGCTGGATGTGTTCCTGTTGTAATCGTCACTAACACTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR GCA 90 bp GCCGGTGCCTTAGCATCTGAGCTGCAGCAGCTGAAGGAGTTGTCTTCTTTAGGCTCCTTGGTCACTGAATaGAGAATTAGCTTGGACATC +
Preference number: 4 (lower is better)
Translates to: AGALASELQQLKELSSLGSLVTE*RISLDI
Trigger: GATGTCCAAGCTAATTCTGCATTCAGTGACCAAGGA...GCCTAAAGAAGACAACTCCTTCAGCTGCTGCAGCTCAGATGCTAAGGCACCGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
ENSMUST00000190646.7
CDS-3UTR GCA 90 bp CTCCCCAGGGCCAGAAAGTGGGTAGTAAGATTAGTGAACGGGGTAGAGTATCAAACCCAGACGGTTCTCTaGCAAGCAAGAGTAATTCCC +
Preference number: 4 (lower is better)
Translates to: LPRARKWVVRLVNGVEYQTQTVL*QARVIP
Trigger: GGGAATTACTCTTGCTTGGCAGAGAACCGTCTGGGT...TTGATACTCTACCCCGTTCACTAATCTTACTACCCACTTTCTGGCCCTGGGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR GCA 90 bp CTCCCCAGGGCCAGAAAGTGGGTAGTAAGATTAGTGAACGGGGTAGAGTATCAAGAAGCCCCTGCTGGCTaGGGTTTTGCTTCCATTTTT +
Preference number: 4 (lower is better)
Translates to: LPRARKWVVRLVNGVEYQEAPAG*GFASIF
Trigger: AAAAATGGAAGCAAAACCGCAGCCAGCAGGGGCTTC...TTGATACTCTACCCCGTTCACTAATCTTACTACCCACTTTCTGGCCCTGGGGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR GCA 90 bp CGAGGGAAGGCACCATCTCCACAGAAGGTCCAACATCTTTGTAGAAGAAAAGCCGAAGCCCCTGCTGGCTaGGGTTTTGCTTCCATTTTT +
Preference number: 4 (lower is better)
Translates to: RGKAPSPQKVQHLCRRKAEAPAG*GFASIF
Trigger: AAAAATGGAAGCAAAACCGCAGCCAGCAGGGGCTTC...GGCTTTTCTTCTACAAAGATGTTGGACCTTCTGTGGAGATGGTGCCTTCCCTCG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR CCA 90 bp ATTTCTCCCCAGGGCCAGAAAGTGGGTAGTAAGATTAGTGAACGGGGTAGAGTACAGGCAAAGAGGGTTTaGGGATGGTCAACGGTCCAA +
Preference number: 4 (lower is better)
Translates to: ISPQGQKVGSKISERGRVQAKRV*GWSTVQ
Trigger: TTGGACCGTTGACCATCCCCAAACCCTCTTTGCCTG...TACTCTACCCCGTTCACTAATCTTACTACCCACTTTCTGGCCCTGGGGAGAAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR CCA 90 bp GATTGGTGTGAAGCTCTGAATCACTGTGGTCACCGCCTTGGGAGCATAATGGACGTACAGCTCAGACTCTaGGTCCTTCTCAGTCTTTGT +
Preference number: 4 (lower is better)
Translates to: DWCEALNHCGHRLGSIMDVQLRL*VLLSLC
Trigger: ACAAAGACTGAGAAGGACCCAGAGTCTGAGCTGTAC...GTCCATTATGCTCCCAAGGCGGTGACCACAGTGATTCAGAGCTTCACACCAATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190646.7
CDS-3UTR CCA 90 bp TTATATATGTCCATTCCGTTCTGTCTGCTCAGCGTCCAGGACCCCCGAGGGAAGGTCAGAGTGACACTTTaGGATTCCCGGATTTCTGAT +
Preference number: 4 (lower is better)
Translates to: LYMSIPFCLLSVQDPRGKVRVTL*DSRISD
Trigger: ATCAGAAATCCGGGAATCCCAAAGTGTCACTCTGAC...CTTCCCTCGGGGGTCCTGGACGCTGAGCAGACAGAACGGAATGGACATATATAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR CCA 90 bp TACAACAGGAACACATCCAGCTGCAGTGAGGCACAGGATGGAGCAGATGGTGGTGTCAGAGTGACACTTTaGGATTCCCGGATTTCTGAT +
Preference number: 4 (lower is better)
Translates to: YNRNTSSCSEAQDGADGGVRVTL*DSRISD
Trigger: ATCAGAAATCCGGGAATCCCAAAGTGTCACTCTGAC...ACCACCATCTGCTCCATCCTGTGCCTCACTGCAGCTGGATGTGTTCCTGTTGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR CCA 90 bp CTCCCCAGGGCCAGAAAGTGGGTAGTAAGATTAGTGAACGGGGTAGAGTATCAAACTTTGGAGGAGTGCTaGACTTGGCACTTCACACTC +
Preference number: 4 (lower is better)
Translates to: LPRARKWVVRLVNGVEYQTLEEC*TWHFTL
Trigger: GAGTGTGAAGTGCCAAGTCCAGCACTCCTCCAAAGT...TTGATACTCTACCCCGTTCACTAATCTTACTACCCACTTTCTGGCCCTGGGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR CCA 90 bp TTTCCAATACAGGGTTTCCTTGAAAAACCCTGGCTGTCCTGGAACCCACTCTGTAGCTCTGAATCACTGTaGTCACCGCCTTGGGAGCAT +
Preference number: 4 (lower is better)
Translates to: FPIQGFLEKPWLSWNPLCSSESL*SPPWEH
Trigger: ATGCTCCCAAGGCGGTGACCACAGTGATTCAGAGCT...ACAGAGTGGGTTCCAGGACAGCCAGGGTTTTTCAAGGAAACCCTGTATTGGAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
CDS-3UTR CCA 90 bp ATTTCTCCCCAGGGCCAGAAAGTGGGTAGTAAGATTAGTGAACGGGGTAGAGTATCTCACAGGACAAGGTaGCCTTCTTCCCCTCCATCA +
Preference number: 4 (lower is better)
Translates to: ISPQGQKVGSKISERGRVSHRTR*PSSPPS
Trigger: TGATGGAGGGGAAGAAGGCCACCTTGTCCTGTGAGA...TACTCTACCCCGTTCACTAATCTTACTACCCACTTTCTGGCCCTGGGGAGAAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR CCA 90 bp TTTCTCCCCAGGGCCAGAAAGTGGGTAGTAAGATTAGTGAACGGGGTAGAGTATTCTCACAGGACAAGGTaGCCTTCTTCCCCTCCATCA +
Preference number: 4 (lower is better)
Translates to: FLPRARKWVVRLVNGVEYSHRTR*PSSPPS
Trigger: TGATGGAGGGGAAGAAGGCCACCTTGTCCTGTGAGA...ATACTCTACCCCGTTCACTAATCTTACTACCCACTTTCTGGCCCTGGGGAGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR CCA 90 bp CTTTGTAGAAGAAAAGCCAACTGGGGACAGTGCCTCTTGCTTCCTTACTTCTGTCTGTGCCTATCCCATTaGTCCCTTTGCAGCGGTAGG +
Preference number: 4 (lower is better)
Translates to: LCRRKANWGQCLLLPYFCLCLSH*SLCSGR
Trigger: CCTACCGCTGCAAAGGGACCAATGGGATAGGCACAG...ACAGAAGTAAGGAAGCAAGAGGCACTGTCCCCAGTTGGCTTTTCTTCTACAAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR GCA 90 bp TTTCCAATACAGGGTTTCCTTGAAAAACCCTGGCTGTCCTGGAACCCACTCTGTAGCACTTTGGAGGAGTaGTGGACTTGGCACTTCACA +
Preference number: 4 (lower is better)
Translates to: FPIQGFLEKPWLSWNPLCSTLEE*WTWHFT
Trigger: TGTGAAGTGCCAAGTCCAGCACTCCTCCAAAGTGCT...ACAGAGTGGGTTCCAGGACAGCCAGGGTTTTTCAAGGAAACCCTGTATTGGAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
ENSMUST00000190646.7
CDS-3UTR GCA 90 bp GCAGCTGAAGGAGTTGTCTTCTTTAGGCTCAAGAACCTGAAACAGCAGCTGCTAAGCACTTTGGAGGAGTaGTGGACTTGGCACTTCACA +
Preference number: 4 (lower is better)
Translates to: AAEGVVFFRLKNLKQQLLSTLEE*WTWHFT
Trigger: TGTGAAGTGCCAAGTCCAGCACTCCTCCAAAGTGCT...TAGCAGCTGCTGTTTCAGGTTCTTGAGCCTAAAGAAGACAACTCCTTCAGCTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
ENSMUST00000190646.7
CDS-3UTR GCA 90 bp CGGGGTAGAGTATCAAGGGGTCAGAGAAGAAGTGTTAGTGACGATTACAACAGGACCCAGACGGTTCTCTaGCAAGCAAGAGTAATTCCC +
Preference number: 4 (lower is better)
Translates to: RGRVSRGQRRSVSDDYNRTQTVL*QARVIP
Trigger: GGGAATTACTCTTGCTTGGCAGAGAACCGTCTGGGT...CCTGTTGTAATCGTCACTAACACTTCTTCTCTGACCCCTTGATACTCTACCCCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR CCA 90 bp CTTTGTAGAAGAAAAGCCAACTGGGGACAGTGCCTCTTGCTTCCTTACTTCTGTCAGGCAAAGAGGGTTTaGGGATGGTCAACGGTCCAA +
Preference number: 4 (lower is better)
Translates to: LCRRKANWGQCLLLPYFCQAKRV*GWSTVQ
Trigger: TTGGACCGTTGACCATCCCCAAACCCTCTTTGCCTG...ACAGAAGTAAGGAAGCAAGAGGCACTGTCCCCAGTTGGCTTTTCTTCTACAAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR CCA 90 bp ACCCCCGAGGGAAGGCACCATCTCCACAGAAGGTCCAACATCTTTGTAGAAGAAGTCAGAGTGACACTTTaGGATTCCCGGATTTCTGAT +
Preference number: 4 (lower is better)
Translates to: TPEGRHHLHRRSNIFVEEVRVTL*DSRISD
Trigger: ATCAGAAATCCGGGAATCCCAAAGTGTCACTCTGAC...TTCTTCTACAAAGATGTTGGACCTTCTGTGGAGATGGTGCCTTCCCTCGGGGGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR CCA 90 bp TTTCTCCCCAGGGCCAGAAAGTGGGTAGTAAGATTAGTGAACGGGGTAGAGTATATGCGGAGCTTCTCTTaGGTGTCTCCAGGTATAGGT +
Preference number: 4 (lower is better)
Translates to: FLPRARKWVVRLVNGVEYMRSFS*VSPGIG
Trigger: ACCTATACCTGGAGACACCCAAGAGAAGCTCCGCAT...ATACTCTACCCCGTTCACTAATCTTACTACCCACTTTCTGGCCCTGGGGAGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR CCA 90 bp GCAGCTGAAGGAGTTGTCTTCTTTAGGCTCAAGAACCTGAAACAGCAGCTGCTAATGCGGAGCTTCTCTTaGGTGTCTCCAGGTATAGGT +
Preference number: 4 (lower is better)
Translates to: AAEGVVFFRLKNLKQQLLMRSFS*VSPGIG
Trigger: ACCTATACCTGGAGACACCCAAGAGAAGCTCCGCAT...TAGCAGCTGCTGTTTCAGGTTCTTGAGCCTAAAGAAGACAACTCCTTCAGCTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
CDS-3UTR CCA 90 bp CTTTGTAGAAGAAAAGCCAACTGGGGACAGTGCCTCTTGCTTCCTTACTTCTGTAGCTCTGAATCACTGTaGTCACCGCCTTGGGAGCAT +
Preference number: 4 (lower is better)
Translates to: LCRRKANWGQCLLLPYFCSSESL*SPPWEH
Trigger: ATGCTCCCAAGGCGGTGACCACAGTGATTCAGAGCT...ACAGAAGTAAGGAAGCAAGAGGCACTGTCCCCAGTTGGCTTTTCTTCTACAAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR CCA 90 bp CTTTGTAGAAGAAAAGCCAACTGGGGACAGTGCCTCTTGCTTCCTTACTTCTGTTCTCACAGGACAAGGTaGCCTTCTTCCCCTCCATCA +
Preference number: 4 (lower is better)
Translates to: LCRRKANWGQCLLLPYFCSHRTR*PSSPPS
Trigger: TGATGGAGGGGAAGAAGGCCACCTTGTCCTGTGAGA...ACAGAAGTAAGGAAGCAAGAGGCACTGTCCCCAGTTGGCTTTTCTTCTACAAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR CCA 90 bp TTTCCAATACAGGGTTTCCTTGAAAAACCCTGGCTGTCCTGGAACCCACTCTGTCTTGCCGATGGTCTCTaGACTGTAGTAGACAGTGAG +
Preference number: 4 (lower is better)
Translates to: FPIQGFLEKPWLSWNPLCLADGL*TVVDSE
Trigger: CTCACTGTCTACTACAGTCCAGAGACCATCGGCAAG...ACAGAGTGGGTTCCAGGACAGCCAGGGTTTTTCAAGGAAACCCTGTATTGGAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
3UTR CAA 72 bp GCACTTCACACTCTTTCCGTGGTCCGTCCACTTTGGTaGGAAGGTGAGCTTGCTCTCTGTATAGACATTCTT +
Preference number: 4 (lower is better)
Translates to: ALHTLSVVRPLW*EGELALCIDIL
Trigger: AAGAATGTCTATACAGAGAGCAAGCTCACCTTCCAACCAAAGTGGACGGACCACGGAAAGAGTGTGAAGTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187989.7
3UTR CAA 72 bp TTGGAAGCCTGGCACCGGTATTTCCCTCTCATGTCCTaGGTCACTGAATGCAGAATTAGCTTGGACATCTGT +
Preference number: 4 (lower is better)
Translates to: LEAWHRYFPLMS*VTECRISLDIC
Trigger: ACAGATGTCCAAGCTAATTCTGCATTCAGTGACCAAGGACATGAGAGGGAAATACCGGTGCCAGGCTTCCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187989.7
CDS-3UTR TCA 90 bp GGTAGTAAGATTAGTGAACGGGGTAGAGTATCAAGGGGTCAGAGAAGAAGTGTTTCCGAGACATTGAGGTaGATGGGCTCCATCCATCGT +
Preference number: 4 (lower is better)
Translates to: GSKISERGRVSRGQRRSVSETLR*MGSIHR
Trigger: ACGATGGATGGAGCCCATTCACCTCAATGTCTCGGA...AACACTTCTTCTCTGACCCCTTGATACTCTACCCCGTTCACTAATCTTACTACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR TCA 90 bp GTAGAGTATCAAGGGGTCAGAGAAGAAGTGTTAGTGACGATTACAACAGGAACAGTCCACAGGTCAGAGTaGCACTTTGGGATTCCCGGA +
Preference number: 4 (lower is better)
Translates to: VEYQGVREEVLVTITTGTVHRSE*HFGIPG
Trigger: TCCGGGAATCCCAAAGTGTCACTCTGACCTGTGGAC...TGTTCCTGTTGTAATCGTCACTAACACTTCTTCTCTGACCCCTTGATACTCTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR CCA 90 bp TTTCCAATACAGGGTTTCCTTGAAAAACCCTGGCTGTCCTGGAACCCACTCTGTGTACAGCTCAGACTCTaGGTCCTTCTCAGTCTTTGT +
Preference number: 4 (lower is better)
Translates to: FPIQGFLEKPWLSWNPLCVQLRL*VLLSLC
Trigger: ACAAAGACTGAGAAGGACCCAGAGTCTGAGCTGTAC...ACAGAGTGGGTTCCAGGACAGCCAGGGTTTTTCAAGGAAACCCTGTATTGGAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
ENSMUST00000190646.7
CDS-3UTR CCA 90 bp ATTTCTCCCCAGGGCCAGAAAGTGGGTAGTAAGATTAGTGAACGGGGTAGAGTAGTACAGCTCAGACTCTaGGTCCTTCTCAGTCTTTGT +
Preference number: 4 (lower is better)
Translates to: ISPQGQKVGSKISERGRVVQLRL*VLLSLC
Trigger: ACAAAGACTGAGAAGGACCCAGAGTCTGAGCTGTAC...TACTCTACCCCGTTCACTAATCTTACTACCCACTTTCTGGCCCTGGGGAGAAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR CCA 90 bp TTTCTCCCCAGGGCCAGAAAGTGGGTAGTAAGATTAGTGAACGGGGTAGAGTATGTACAGCTCAGACTCTaGGTCCTTCTCAGTCTTTGT +
Preference number: 4 (lower is better)
Translates to: FLPRARKWVVRLVNGVEYVQLRL*VLLSLC
Trigger: ACAAAGACTGAGAAGGACCCAGAGTCTGAGCTGTAC...ATACTCTACCCCGTTCACTAATCTTACTACCCACTTTCTGGCCCTGGGGAGAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR CCA 90 bp GCAGCTGAAGGAGTTGTCTTCTTTAGGCTCAAGAACCTGAAACAGCAGCTGCTAGTACAGCTCAGACTCTaGGTCCTTCTCAGTCTTTGT +
Preference number: 4 (lower is better)
Translates to: AAEGVVFFRLKNLKQQLLVQLRL*VLLSLC
Trigger: ACAAAGACTGAGAAGGACCCAGAGTCTGAGCTGTAC...TAGCAGCTGCTGTTTCAGGTTCTTGAGCCTAAAGAAGACAACTCCTTCAGCTGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
ENSMUST00000190646.7
CDS-3UTR CCA 90 bp TTCTGTCCTTCCTGGGGATTTCTCCCCAGGGCCAGAAAGTGGGTAGTAAGATTATTGTTGCACTTGGACTaGCCAGTGACTCACAAATCA +
Preference number: 4 (lower is better)
Translates to: FCPSWGFLPRARKWVVRLLLHLD*PVTHKS
Trigger: TGATTTGTGAGTCACTGGCCAGTCCAAGTGCAACAA...TAATCTTACTACCCACTTTCTGGCCCTGGGGAGAAATCCCCAGGAAGGACAGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR CCA 90 bp CTTATTGAATTATATATGTCCATTCCGTTCTGTCTGCTCAGCGTCCAGGACCCCATGCGGAGCTTCTCTTaGGTGTCTCCAGGTATAGGT +
Preference number: 4 (lower is better)
Translates to: LIELYMSIPFCLLSVQDPMRSFS*VSPGIG
Trigger: ACCTATACCTGGAGACACCCAAGAGAAGCTCCGCAT...GGGGTCCTGGACGCTGAGCAGACAGAACGGAATGGACATATATAATTCAATAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR CCA 90 bp TTTCTCCCCAGGGCCAGAAAGTGGGTAGTAAGATTAGTGAACGGGGTAGAGTATGTCTCCTTCCAGGATTaGTGTGAAGCTCTGAATCAC +
Preference number: 4 (lower is better)
Translates to: FLPRARKWVVRLVNGVEYVSFQD*CEALNH
Trigger: GTGATTCAGAGCTTCACACCAATCCTGGAAGGAGAC...ATACTCTACCCCGTTCACTAATCTTACTACCCACTTTCTGGCCCTGGGGAGAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR CCA 90 bp GCAGCTGAAGGAGTTGTCTTCTTTAGGCTCAAGAACCTGAAACAGCAGCTGCTAGTCTCCTTCCAGGATTaGTGTGAAGCTCTGAATCAC +
Preference number: 4 (lower is better)
Translates to: AAEGVVFFRLKNLKQQLLVSFQD*CEALNH
Trigger: GTGATTCAGAGCTTCACACCAATCCTGGAAGGAGAC...TAGCAGCTGCTGTTTCAGGTTCTTGAGCCTAAAGAAGACAACTCCTTCAGCTGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
CDS-3UTR CCA 90 bp GGTAGTAAGATTAGTGAACGGGGTAGAGTATCAAGGGGTCAGAGAAGAAGTGTTTCCAGTCTCAGTTTCTaGCCTGAGGAGTGGAGGTCT +
Preference number: 4 (lower is better)
Translates to: GSKISERGRVSRGQRRSVSSLSF*PEEWRS
Trigger: AGACCTCCACTCCTCAGGCCAGAAACTGAGACTGGA...AACACTTCTTCTCTGACCCCTTGATACTCTACCCCGTTCACTAATCTTACTACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR GCA 90 bp TCCTTCCTGGGGATTTCTCCCCAGGGCCAGAAAGTGGGTAGTAAGATTAGTGAATCCTTGGTCACTGAATaGAGAATTAGCTTGGACATC +
Preference number: 4 (lower is better)
Translates to: SFLGISPQGQKVGSKISESLVTE*RISLDI
Trigger: GATGTCCAAGCTAATTCTGCATTCAGTGACCAAGGA...TTCACTAATCTTACTACCCACTTTCTGGCCCTGGGGAGAAATCCCCAGGAAGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR GCA 90 bp CCCGAGGGAAGGCACCATCTCCACAGAAGGTCCAACATCTTTGTAGAAGAAAAGTCCTTGGTCACTGAATaGAGAATTAGCTTGGACATC +
Preference number: 4 (lower is better)
Translates to: PEGRHHLHRRSNIFVEEKSLVTE*RISLDI
Trigger: GATGTCCAAGCTAATTCTGCATTCAGTGACCAAGGA...CTTTTCTTCTACAAAGATGTTGGACCTTCTGTGGAGATGGTGCCTTCCCTCGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR GCA 90 bp ATGGACATCCAGCTTAGCTTCCTGGTCTATCTTTCCATGACCCAGACGGTTCTCTCCTTGGTCACTGAATaGAGAATTAGCTTGGACATC +
Preference number: 4 (lower is better)
Translates to: MDIQLSFLVYLSMTQTVLSLVTE*RISLDI
Trigger: GATGTCCAAGCTAATTCTGCATTCAGTGACCAAGGA...GAGAACCGTCTGGGTCATGGAAAGATAGACCAGGAAGCTAAGCTGGATGTCCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190455.2
ENSMUST00000190646.7
CDS-3UTR GCA 90 bp GTAGAGTATCAAGGGGTCAGAGAAGAAGTGTTAGTGACGATTACAACAGGAACAAGGTACCTCCCTTCCTaGACGAGACTCCCATTCTTC +
Preference number: 4 (lower is better)
Translates to: VEYQGVREEVLVTITTGTRYLPS*TRLPFF
Trigger: GAAGAATGGGAGTCTCGTGCAGGAAGGGAGGTACCT...TGTTCCTGTTGTAATCGTCACTAACACTTCTTCTCTGACCCCTTGATACTCTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR CCA 90 bp CTTATTGAATTATATATGTCCATTCCGTTCTGTCTGCTCAGCGTCCAGGACCCCTGTCCAGACGTGCCTTaGGTAGTGGAGTTTTGTACT +
Preference number: 4 (lower is better)
Translates to: LIELYMSIPFCLLSVQDPCPDVP*VVEFCT
Trigger: AGTACAAAACTCCACTACCCAAGGCACGTCTGGACA...GGGGTCCTGGACGCTGAGCAGACAGAACGGAATGGACATATATAATTCAATAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR CCA 90 bp GCAGCTGAAGGAGTTGTCTTCTTTAGGCTCAAGAACCTGAAACAGCAGCTGCTATTGTTGCACTTGGACTaGCCAGTGACTCACAAATCA +
Preference number: 4 (lower is better)
Translates to: AAEGVVFFRLKNLKQQLLLLHLD*PVTHKS
Trigger: TGATTTGTGAGTCACTGGCCAGTCCAAGTGCAACAA...TAGCAGCTGCTGTTTCAGGTTCTTGAGCCTAAAGAAGACAACTCCTTCAGCTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
CDS-3UTR CCA 90 bp TTTCCAATACAGGGTTTCCTTGAAAAACCCTGGCTGTCCTGGAACCCACTCTGTTTGTTGCACTTGGACTaGCCAGTGACTCACAAATCA +
Preference number: 4 (lower is better)
Translates to: FPIQGFLEKPWLSWNPLCLLHLD*PVTHKS
Trigger: TGATTTGTGAGTCACTGGCCAGTCCAAGTGCAACAA...ACAGAGTGGGTTCCAGGACAGCCAGGGTTTTTCAAGGAAACCCTGTATTGGAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
CDS-3UTR CCA 90 bp GTAGAGTATCAAGGGGTCAGAGAAGAAGTGTTAGTGACGATTACAACAGGAACAAGCTCTGAATCACTGTaGTCACCGCCTTGGGAGCAT +
Preference number: 4 (lower is better)
Translates to: VEYQGVREEVLVTITTGTSSESL*SPPWEH
Trigger: ATGCTCCCAAGGCGGTGACCACAGTGATTCAGAGCT...TGTTCCTGTTGTAATCGTCACTAACACTTCTTCTCTGACCCCTTGATACTCTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
3UTR CAA 72 bp GTTTCCTGTTGTGATACCAGGTGTAGTTTGTTGCACTaGGACTGGCCAGTGACTCACAAATCAGCTCTACTG +
Preference number: 4 (lower is better)
Translates to: VSCCDTRCSLLH*DWPVTHKSALL
Trigger: CAGTAGAGCTGATTTGTGAGTCACTGGCCAGTCCAAGTGCAACAAACTACACCTGGTATCACAACAGGAAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000187989.7
ENSMUST00000190646.7
3UTR CAA 72 bp TTGCTGCTGTTAACCCGGCATGTCATGGTCACAGAATaGTTCTTTTCCACCTCTGTGGGATTGACCTTGATC +
Preference number: 4 (lower is better)
Translates to: LLLLTRHVMVTE*FFSTSVGLTLI
Trigger: GATCAAGGTCAATCCCACAGAGGTGGAAAAGAACAATTCTGTGACCATGACATGCCGGGTTAACAGCAGCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187989.7
CDS-3UTR TCA 90 bp TTTCCAATACAGGGTTTCCTTGAAAAACCCTGGCTGTCCTGGAACCCACTCTGTCTCCGATGGAGTTGTTaGCCATGCAGTTATAATTTC +
Preference number: 4 (lower is better)
Translates to: FPIQGFLEKPWLSWNPLCLRWSC*PCSYNF
Trigger: GAAATTATAACTGCATGGTCAACAACTCCATCGGAG...ACAGAGTGGGTTCCAGGACAGCCAGGGTTTTTCAAGGAAACCCTGTATTGGAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
CDS-3UTR TCA 90 bp GCAGCTGAAGGAGTTGTCTTCTTTAGGCTCAAGAACCTGAAACAGCAGCTGCTACTCCGATGGAGTTGTTaGCCATGCAGTTATAATTTC +
Preference number: 4 (lower is better)
Translates to: AAEGVVFFRLKNLKQQLLLRWSC*PCSYNF
Trigger: GAAATTATAACTGCATGGTCAACAACTCCATCGGAG...TAGCAGCTGCTGTTTCAGGTTCTTGAGCCTAAAGAAGACAACTCCTTCAGCTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
CDS-3UTR CCA 90 bp GGTAGTAAGATTAGTGAACGGGGTAGAGTATCAAGGGGTCAGAGAAGAAGTGTTTGTCCAGACGTGCCTTaGGTAGTGGAGTTTTGTACT +
Preference number: 4 (lower is better)
Translates to: GSKISERGRVSRGQRRSVCPDVP*VVEFCT
Trigger: AGTACAAAACTCCACTACCCAAGGCACGTCTGGACA...AACACTTCTTCTCTGACCCCTTGATACTCTACCCCGTTCACTAATCTTACTACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR CCA 90 bp GTAGAGTATCAAGGGGTCAGAGAAGAAGTGTTAGTGACGATTACAACAGGAACAACTTTGGAGGAGTGCTaGACTTGGCACTTCACACTC +
Preference number: 4 (lower is better)
Translates to: VEYQGVREEVLVTITTGTTLEEC*TWHFTL
Trigger: GAGTGTGAAGTGCCAAGTCCAGCACTCCTCCAAAGT...TGTTCCTGTTGTAATCGTCACTAACACTTCTTCTCTGACCCCTTGATACTCTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR CCA 90 bp TACCAACACTGTGAGACAATGGTGCCTCTAGGGACTGATTTGATAATGAGATTATCCAGTCTCAGTTTCTaGCCTGAGGAGTGGAGGTCT +
Preference number: 4 (lower is better)
Translates to: YQHCETMVPLGTDLIMRLSSLSF*PEEWRS
Trigger: AGACCTCCACTCCTCAGGCCAGAAACTGAGACTGGA...TAATCTCATTATCAAATCAGTCCCTAGAGGCACCATTGTCTCACAGTGTTGGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019248.13
CDS-3UTR TCA 90 bp CTTATTGAATTATATATGTCCATTCCGTTCTGTCTGCTCAGCGTCCAGGACCCCCTCCGATGGAGTTGTTaGCCATGCAGTTATAATTTC +
Preference number: 4 (lower is better)
Translates to: LIELYMSIPFCLLSVQDPLRWSC*PCSYNF
Trigger: GAAATTATAACTGCATGGTCAACAACTCCATCGGAG...GGGGTCCTGGACGCTGAGCAGACAGAACGGAATGGACATATATAATTCAATAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
3UTR CAA 72 bp ATTGTCTATTCTGTTCCCCAGAAATGTTACTCTCCCTaGCTTAGAAAGGTACAGCTCAGACTCTGGGTCCTT +
Preference number: 4 (lower is better)
Translates to: IVYSVPQKCYSP*LRKVQLRLWVL
Trigger: AAGGACCCAGAGTCTGAGCTGTACCTTTCTAAGCAAGGGAGAGTAACATTTCTGGGGAACAGAATAGACAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187989.7
3UTR CAA 72 bp TCATTGGCACGTATCGGGTGGATTTTCAGGGTACAATaGTCTATTCTGTTCCCCAGAAATGTTACTCTCCCT +
Preference number: 4 (lower is better)
Translates to: SLARIGWIFRVQ*SILFPRNVTLP
Trigger: AGGGAGAGTAACATTTCTGGGGAACAGAATAGACAATTGTACCCTGAAAATCCACCCGATACGTGCCAATGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187989.7
CDS-3UTR GCA 90 bp GTAGAGTATCAAGGGGTCAGAGAAGAAGTGTTAGTGACGATTACAACAGGAACATCCTTGGTCACTGAATaGAGAATTAGCTTGGACATC +
Preference number: 4 (lower is better)
Translates to: VEYQGVREEVLVTITTGTSLVTE*RISLDI
Trigger: GATGTCCAAGCTAATTCTGCATTCAGTGACCAAGGA...TGTTCCTGTTGTAATCGTCACTAACACTTCTTCTCTGACCCCTTGATACTCTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR CAA 90 bp AGCAGGCTGGCCTCGAACTCAGAAATCCGCCCGCCTCTGCCTCCTGAGTGCTGGGAGGAGGAGCCTGTGTaGCTGGGGTCCCTGCATCTC +
Preference number: 5 (lower is better)
Translates to: SRLASNSEIRPPLPPECWEEEPV*LGSLHL
Trigger: GAGATGCAGGGACCCCAGCAACACAGGCTCCTCCTC...CCAGCACTCAGGAGGCAGAGGCGGGCGGATTTCTGAGTTCGAGGCCAGCCTGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
CDS-3UTR CAA 90 bp AGCAGGCTGGCCTCGAACTCAGAAATCCGCCCGCCTCTGCCTCCTGAGTGCTGGCCTGGGCCTATGTCGTaGGAAGCCTGGCACCGGTAT +
Preference number: 5 (lower is better)
Translates to: SRLASNSEIRPPLPPECWPGPMS*EAWHRY
Trigger: ATACCGGTGCCAGGCTTCCAACGACATAGGCCCAGG...CCAGCACTCAGGAGGCAGAGGCGGGCGGATTTCTGAGTTCGAGGCCAGCCTGCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
ENSMUST00000190646.7
CDS-3UTR CAA 90 bp GACGTGGCACAATGCGTGAGGGAGGATCACCAGCCAGAGAAGGCCGGTCAGGTCGAGGAGGAGCCTGTGTaGCTGGGGTCCCTGCATCTC +
Preference number: 5 (lower is better)
Translates to: DVAQCVREDHQPEKAGQVEEEPV*LGSLHL
Trigger: GAGATGCAGGGACCCCAGCAACACAGGCTCCTCCTC...GACCTGACCGGCCTTCTCTGGCTGGTGATCCTCCCTCACGCATTGTGCCACGTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR CAA 90 bp GACGTGGCACAATGCGTGAGGGAGGATCACCAGCCAGAGAAGGCCGGTCAGGTCCCTGGGCCTATGTCGTaGGAAGCCTGGCACCGGTAT +
Preference number: 5 (lower is better)
Translates to: DVAQCVREDHQPEKAGQVPGPMS*EAWHRY
Trigger: ATACCGGTGCCAGGCTTCCAACGACATAGGCCCAGG...GACCTGACCGGCCTTCTCTGGCTGGTGATCCTCCCTCACGCATTGTGCCACGTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR CAA 90 bp TCTGCTCAGCGTCCAGGACCCCCGAGGGAAGGCACCATCTCCACAGAAGGTCCACCTGGGCCTATGTCGTaGGAAGCCTGGCACCGGTAT +
Preference number: 5 (lower is better)
Translates to: SAQRPGPPREGTISTEGPPGPMS*EAWHRY
Trigger: ATACCGGTGCCAGGCTTCCAACGACATAGGCCCAGG...TGGACCTTCTGTGGAGATGGTGCCTTCCCTCGGGGGTCCTGGACGCTGAGCAGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR CAA 90 bp CGTGCCCAGGGAGCTGCCGGTGCCTTAGCATCTGAGCTGCAGCAGCTGAAGGAGCTCAGCACTCCGGGTTaGAGCACACTCCCAGAACCT +
Preference number: 5 (lower is better)
Translates to: RAQGAAGALASELQQLKELSTPG*STLPEP
Trigger: AGGTTCTGGGAGTGTGCTCAAACCCGGAGTGCTGAG...CTCCTTCAGCTGCTGCAGCTCAGATGCTAAGGCACCGGCAGCTCCCTGGGCACG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
CDS-3UTR CAA 90 bp CGTGCCCAGGGAGCTGCCGGTGCCTTAGCATCTGAGCTGCAGCAGCTGAAGGAGGTGACCGAGTCGCTGTaGTTTGGAGGAGGAGCCTGT +
Preference number: 5 (lower is better)
Translates to: RAQGAAGALASELQQLKEVTESL*FGGGAC
Trigger: ACAGGCTCCTCCTCCAAACAACAGCGACTCGGTCAC...CTCCTTCAGCTGCTGCAGCTCAGATGCTAAGGCACCGGCAGCTCCCTGGGCACG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
CDS-3UTR CAA 90 bp CGTGCCCAGGGAGCTGCCGGTGCCTTAGCATCTGAGCTGCAGCAGCTGAAGGAGCACGAACACTTGTGGTaGCAGGCAGCACAGCTGACA +
Preference number: 5 (lower is better)
Translates to: RAQGAAGALASELQQLKEHEHLW*QAAQLT
Trigger: TGTCAGCTGTGCTGCCTGCAACCACAAGTGTTCGTG...CTCCTTCAGCTGCTGCAGCTCAGATGCTAAGGCACCGGCAGCTCCCTGGGCACG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
CDS-3UTR CAA 90 bp AGCAGGCTGGCCTCGAACTCAGAAATCCGCCCGCCTCTGCCTCCTGAGTGCTGGCACGAACACTTGTGGTaGCAGGCAGCACAGCTGACA +
Preference number: 5 (lower is better)
Translates to: SRLASNSEIRPPLPPECWHEHLW*QAAQLT
Trigger: TGTCAGCTGTGCTGCCTGCAACCACAAGTGTTCGTG...CCAGCACTCAGGAGGCAGAGGCGGGCGGATTTCTGAGTTCGAGGCCAGCCTGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
CDS-3UTR CAA 90 bp AGCGTCCAGGACCCCCGAGGGAAGGCACCATCTCCACAGAAGGTCCAACATCTTCCTGGGCCTATGTCGTaGGAAGCCTGGCACCGGTAT +
Preference number: 5 (lower is better)
Translates to: SVQDPRGKAPSPQKVQHLPGPMS*EAWHRY
Trigger: ATACCGGTGCCAGGCTTCCAACGACATAGGCCCAGG...AAGATGTTGGACCTTCTGTGGAGATGGTGCCTTCCCTCGGGGGTCCTGGACGCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR CAA 90 bp AGCAGATGGTGGTGGGTGCCTGGGGTTGGAGAAGCAGACGTGGCACAATGCGTGCTCAGCACTCCGGGTTaGAGCACACTCCCAGAACCT +
Preference number: 5 (lower is better)
Translates to: SRWWWVPGVGEADVAQCVLSTPG*STLPEP
Trigger: AGGTTCTGGGAGTGTGCTCAAACCCGGAGTGCTGAG...CACGCATTGTGCCACGTCTGCTTCTCCAACCCCAGGCACCCACCACCATCTGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR CAA 90 bp TATGTCCATTCCGTTCTGTCTGCTCAGCGTCCAGGACCCCCGAGGGAAGGCACCCTCAGCACTCCGGGTTaGAGCACACTCCCAGAACCT +
Preference number: 5 (lower is better)
Translates to: YVHSVLSAQRPGPPREGTLSTPG*STLPEP
Trigger: AGGTTCTGGGAGTGTGCTCAAACCCGGAGTGCTGAG...GGTGCCTTCCCTCGGGGGTCCTGGACGCTGAGCAGACAGAACGGAATGGACATA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR CAA 90 bp ATGGAGCAGATGGTGGTGGGTGCCTGGGGTTGGAGAAGCAGACGTGGCACAATGGTAGGAACCCGTGTGTaGGACCTCCAGGGGTTCCAG +
Preference number: 5 (lower is better)
Translates to: MEQMVVGAWGWRSRRGTMVGTRV*DLQGFQ
Trigger: CTGGAACCCCTGGAGGTCCAACACACGGGTTCCTAC...CATTGTGCCACGTCTGCTTCTCCAACCCCAGGCACCCACCACCATCTGCTCCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR CAA 90 bp CCTGGGGTTGGAGAAGCAGACGTGGCACAATGCGTGAGGGAGGATCACCAGCCAGTGACCGAGTCGCTGTaGTTTGGAGGAGGAGCCTGT +
Preference number: 5 (lower is better)
Translates to: PGVGEADVAQCVREDHQPVTESL*FGGGAC
Trigger: ACAGGCTCCTCCTCCAAACAACAGCGACTCGGTCAC...TGGCTGGTGATCCTCCCTCACGCATTGTGCCACGTCTGCTTCTCCAACCCCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR CAA 90 bp TATGTCCATTCCGTTCTGTCTGCTCAGCGTCCAGGACCCCCGAGGGAAGGCACCGTGACCGAGTCGCTGTaGTTTGGAGGAGGAGCCTGT +
Preference number: 5 (lower is better)
Translates to: YVHSVLSAQRPGPPREGTVTESL*FGGGAC
Trigger: ACAGGCTCCTCCTCCAAACAACAGCGACTCGGTCAC...GGTGCCTTCCCTCGGGGGTCCTGGACGCTGAGCAGACAGAACGGAATGGACATA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR CAA 90 bp CGTGCCCAGGGAGCTGCCGGTGCCTTAGCATCTGAGCTGCAGCAGCTGAAGGAGTCAGTCTTTGTGGCGTaGTACAGGACAGTTCCTGTG +
Preference number: 5 (lower is better)
Translates to: RAQGAAGALASELQQLKESVFVA*YRTVPV
Trigger: CACAGGAACTGTCCTGTACAACGCCACAAAGACTGA...CTCCTTCAGCTGCTGCAGCTCAGATGCTAAGGCACCGGCAGCTCCCTGGGCACG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
ENSMUST00000190646.7
CDS-3UTR CAA 90 bp GGATGGAGCAGATGGTGGTGGGTGCCTGGGGTTGGAGAAGCAGACGTGGCACAAGTCCGTCCACTTTGGTaGGAAGGTGAGCTTGCTCTC +
Preference number: 5 (lower is better)
Translates to: GWSRWWWVPGVGEADVAQVRPLW*EGELAL
Trigger: GAGAGCAAGCTCACCTTCCAACCAAAGTGGACGGAC...TTGTGCCACGTCTGCTTCTCCAACCCCAGGCACCCACCACCATCTGCTCCATCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR CAA 90 bp AGCAGATGGTGGTGGGTGCCTGGGGTTGGAGAAGCAGACGTGGCACAATGCGTGGTCCGTCCACTTTGGTaGGAAGGTGAGCTTGCTCTC +
Preference number: 5 (lower is better)
Translates to: SRWWWVPGVGEADVAQCVVRPLW*EGELAL
Trigger: GAGAGCAAGCTCACCTTCCAACCAAAGTGGACGGAC...CACGCATTGTGCCACGTCTGCTTCTCCAACCCCAGGCACCCACCACCATCTGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR CAA 90 bp AGCGTCCAGGACCCCCGAGGGAAGGCACCATCTCCACAGAAGGTCCAACATCTTCGCTCTGAGAGCACTTaGGAGGAGTGCTGGACTTGG +
Preference number: 5 (lower is better)
Translates to: SVQDPRGKAPSPQKVQHLRSEST*EECWTW
Trigger: CCAAGTCCAGCACTCCTCCAAAGTGCTCTCAGAGCG...AAGATGTTGGACCTTCTGTGGAGATGGTGCCTTCCCTCGGGGGTCCTGGACGCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR CAA 90 bp AGCGTCCAGGACCCCCGAGGGAAGGCACCATCTCCACAGAAGGTCCAACATCTTCTCAGCACTCCGGGTTaGAGCACACTCCCAGAACCT +
Preference number: 5 (lower is better)
Translates to: SVQDPRGKAPSPQKVQHLLSTPG*STLPEP
Trigger: AGGTTCTGGGAGTGTGCTCAAACCCGGAGTGCTGAG...AAGATGTTGGACCTTCTGTGGAGATGGTGCCTTCCCTCGGGGGTCCTGGACGCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS CCA 90 bp TCTGGGGGCGTAGTGCACCGTGAGTTCCACTTCTTCCGACTCTCCTaGGCCTATGTCGTTGGAAGCCTGGCACCGGTATTTCCCTCTCAT +
Preference number: 5 (lower is better)
Translates to: SGGVVHREFHFFRLS*AYVVGSLAPVFPSH
Trigger: ATGAGAGGGAAATACCGGTGCCAGGCTTCCAACGACATAGGCCCAGGAGAGTCGGAAGAAGTGGAACTCACGGTGCACTACGCCCCCAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000214289.2
CDS-3UTR CAA 90 bp TCTGCTCAGCGTCCAGGACCCCCGAGGGAAGGCACCATCTCCACAGAAGGTCCATCAGTCTTTGTGGCGTaGTACAGGACAGTTCCTGTG +
Preference number: 5 (lower is better)
Translates to: SAQRPGPPREGTISTEGPSVFVA*YRTVPV
Trigger: CACAGGAACTGTCCTGTACAACGCCACAAAGACTGA...TGGACCTTCTGTGGAGATGGTGCCTTCCCTCGGGGGTCCTGGACGCTGAGCAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR CAA 90 bp CAGGGAGCTGCCGGTGCCTTAGCATCTGAGCTGCAGCAGCTGAAGGAGTTGTCTGTCCGTCCACTTTGGTaGGAAGGTGAGCTTGCTCTC +
Preference number: 5 (lower is better)
Translates to: QGAAGALASELQQLKELSVRPLW*EGELAL
Trigger: GAGAGCAAGCTCACCTTCCAACCAAAGTGGACGGAC...AGACAACTCCTTCAGCTGCTGCAGCTCAGATGCTAAGGCACCGGCAGCTCCCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
ENSMUST00000190646.7
CDS-3UTR CAA 90 bp GCCGGTGCCTTAGCATCTGAGCTGCAGCAGCTGAAGGAGTTGTCTTCTTTAGGCGTAGGAACCCGTGTGTaGGACCTCCAGGGGTTCCAG +
Preference number: 5 (lower is better)
Translates to: AGALASELQQLKELSSLGVGTRV*DLQGFQ
Trigger: CTGGAACCCCTGGAGGTCCAACACACGGGTTCCTAC...GCCTAAAGAAGACAACTCCTTCAGCTGCTGCAGCTCAGATGCTAAGGCACCGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
CDS TCA 90 bp GGCTTACCTTCAGTACCTTCACGTCTCTGGGGGCGTAGTGCACCGTaGGTTCCACTTCTTCCGACTCTCCTGGGCCTATGTCGTTGGAAG +
Preference number: 5 (lower is better)
Translates to: GLPSVPSRLWGRSAP*VPLLPTLLGLCRWK
Trigger: CTTCCAACGACATAGGCCCAGGAGAGTCGGAAGAAGTGGAACTCACGGTGCACTACGCCCCCAGAGACGTGAAGGTACTGAAGGTAAGCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000214289.2
CDS-3UTR CAA 90 bp GCCGGTGCCTTAGCATCTGAGCTGCAGCAGCTGAAGGAGTTGTCTTCTTTAGGCCGCTCTGAGAGCACTTaGGAGGAGTGCTGGACTTGG +
Preference number: 5 (lower is better)
Translates to: AGALASELQQLKELSSLGRSEST*EECWTW
Trigger: CCAAGTCCAGCACTCCTCCAAAGTGCTCTCAGAGCG...GCCTAAAGAAGACAACTCCTTCAGCTGCTGCAGCTCAGATGCTAAGGCACCGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
ENSMUST00000190646.7
CDS-3UTR CAA 90 bp CGTGCCCAGGGAGCTGCCGGTGCCTTAGCATCTGAGCTGCAGCAGCTGAAGGAGTTCCCTCTCATGTCCTaGGTCACTGAATGCAGAATT +
Preference number: 5 (lower is better)
Translates to: RAQGAAGALASELQQLKEFPLMS*VTECRI
Trigger: AATTCTGCATTCAGTGACCAAGGACATGAGAGGGAA...CTCCTTCAGCTGCTGCAGCTCAGATGCTAAGGCACCGGCAGCTCCCTGGGCACG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
ENSMUST00000190646.7
CDS-3UTR CAA 90 bp AGCAGGCTGGCCTCGAACTCAGAAATCCGCCCGCCTCTGCCTCCTGAGTGCTGGTTCCCTCTCATGTCCTaGGTCACTGAATGCAGAATT +
Preference number: 5 (lower is better)
Translates to: SRLASNSEIRPPLPPECWFPLMS*VTECRI
Trigger: AATTCTGCATTCAGTGACCAAGGACATGAGAGGGAA...CCAGCACTCAGGAGGCAGAGGCGGGCGGATTTCTGAGTTCGAGGCCAGCCTGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
ENSMUST00000190646.7
CDS-3UTR CAA 90 bp TACAACAGGAACACATCCAGCTGCAGTGAGGCACAGGATGGAGCAGATGGTGGTGTAGGAACCCGTGTGTaGGACCTCCAGGGGTTCCAG +
Preference number: 5 (lower is better)
Translates to: YNRNTSSCSEAQDGADGGVGTRV*DLQGFQ
Trigger: CTGGAACCCCTGGAGGTCCAACACACGGGTTCCTAC...ACCACCATCTGCTCCATCCTGTGCCTCACTGCAGCTGGATGTGTTCCTGTTGTA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR CAA 90 bp GACGATTACAACAGGAACACATCCAGCTGCAGTGAGGCACAGGATGGAGCAGATCCTGGGCCTATGTCGTaGGAAGCCTGGCACCGGTAT +
Preference number: 5 (lower is better)
Translates to: DDYNRNTSSCSEAQDGADPGPMS*EAWHRY
Trigger: ATACCGGTGCCAGGCTTCCAACGACATAGGCCCAGG...ATCTGCTCCATCCTGTGCCTCACTGCAGCTGGATGTGTTCCTGTTGTAATCGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR CAA 90 bp CAGGGAGCTGCCGGTGCCTTAGCATCTGAGCTGCAGCAGCTGAAGGAGTTGTCTTGTAGTTTGTTGCACTaGGACTGGCCAGTGACTCAC +
Preference number: 5 (lower is better)
Translates to: QGAAGALASELQQLKELSCSLLH*DWPVTH
Trigger: GTGAGTCACTGGCCAGTCCAAGTGCAACAAACTACA...AGACAACTCCTTCAGCTGCTGCAGCTCAGATGCTAAGGCACCGGCAGCTCCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
CDS-3UTR CAA 90 bp TTCTGTCCTTCCTGGGGATTTCTCCCCAGGGCCAGAAAGTGGGTAGTAAGATTAGAGGAGGAGCCTGTGTaGCTGGGGTCCCTGCATCTC +
Preference number: 5 (lower is better)
Translates to: FCPSWGFLPRARKWVVRLEEEPV*LGSLHL
Trigger: GAGATGCAGGGACCCCAGCAACACAGGCTCCTCCTC...TAATCTTACTACCCACTTTCTGGCCCTGGGGAGAAATCCCCAGGAAGGACAGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS CCA 90 bp AGGAAACTCACAGTGCACCGTGAGTTCCACTTCTTCCGACTCTCCTaGGCCTATGTCGTTGGAAGCCTGGCACCGGTATTTCCCTCTCAT +
Preference number: 5 (lower is better)
Translates to: RKLTVHREFHFFRLS*AYVVGSLAPVFPSH
Trigger: ATGAGAGGGAAATACCGGTGCCAGGCTTCCAACGACATAGGCCCAGGAGAGTCGGAAGAAGTGGAACTCACGGTGCACTGTGAGTTTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190646.7
CDS-3UTR CAA 90 bp GGATGGAGCAGATGGTGGTGGGTGCCTGGGGTTGGAGAAGCAGACGTGGCACAAGTTCCTGTGAATTTCTaGGTGGCCTTGTCAAACTCA +
Preference number: 5 (lower is better)
Translates to: GWSRWWWVPGVGEADVAQVPVNF*VALSNS
Trigger: TGAGTTTGACAAGGCCACCAAGAAATTCACAGGAAC...TTGTGCCACGTCTGCTTCTCCAACCCCAGGCACCCACCACCATCTGCTCCATCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR CAA 90 bp AGCAGGCTGGCCTCGAACTCAGAAATCCGCCCGCCTCTGCCTCCTGAGTGCTGGATTTTCAGGGTACAATaGTCTATTCTGTTCCCCAGA +
Preference number: 5 (lower is better)
Translates to: SRLASNSEIRPPLPPECWIFRVQ*SILFPR
Trigger: TCTGGGGAACAGAATAGACAATTGTACCCTGAAAAT...CCAGCACTCAGGAGGCAGAGGCGGGCGGATTTCTGAGTTCGAGGCCAGCCTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
ENSMUST00000190646.7
CDS-3UTR CAA 90 bp TCCTTACTTCTGTCCTTCCTGGGGATTTCTCCCCAGGGCCAGAAAGTGGGTAGTGTCCGTCCACTTTGGTaGGAAGGTGAGCTTGCTCTC +
Preference number: 5 (lower is better)
Translates to: SLLLSFLGISPQGQKVGSVRPLW*EGELAL
Trigger: GAGAGCAAGCTCACCTTCCAACCAAAGTGGACGGAC...ACTACCCACTTTCTGGCCCTGGGGAGAAATCCCCAGGAAGGACAGAAGTAAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR CAA 90 bp GGATGGAGCAGATGGTGGTGGGTGCCTGGGGTTGGAGAAGCAGACGTGGCACAAGTCATGGTCACAGAATaGTTCTTTTCCACCTCTGTG +
Preference number: 5 (lower is better)
Translates to: GWSRWWWVPGVGEADVAQVMVTE*FFSTSV
Trigger: CACAGAGGTGGAAAAGAACAATTCTGTGACCATGAC...TTGTGCCACGTCTGCTTCTCCAACCCCAGGCACCCACCACCATCTGCTCCATCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR CAA 90 bp GAAGTGTTAGTGACGATTACAACAGGAACACATCCAGCTGCAGTGAGGCACAGGCCTGGGCCTATGTCGTaGGAAGCCTGGCACCGGTAT +
Preference number: 5 (lower is better)
Translates to: EVLVTITTGTHPAAVRHRPGPMS*EAWHRY
Trigger: ATACCGGTGCCAGGCTTCCAACGACATAGGCCCAGG...CCTGTGCCTCACTGCAGCTGGATGTGTTCCTGTTGTAATCGTCACTAACACTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR CAA 90 bp TCCAGGACCCCCGAGGGAAGGCACCATCTCCACAGAAGGTCCAACATCTTTGTAACCAGGTGTAGTTTGTaGCACTTGGACTGGCCAGTG +
Preference number: 5 (lower is better)
Translates to: SRTPEGRHHLHRRSNIFVTRCSL*HLDWPV
Trigger: CACTGGCCAGTCCAAGTGCAACAAACTACACCTGGT...TACAAAGATGTTGGACCTTCTGTGGAGATGGTGCCTTCCCTCGGGGGTCCTGGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR CAA 90 bp GCCGGTGCCTTAGCATCTGAGCTGCAGCAGCTGAAGGAGTTGTCTTCTTTAGGCACCAGGTGTAGTTTGTaGCACTTGGACTGGCCAGTG +
Preference number: 5 (lower is better)
Translates to: AGALASELQQLKELSSLGTRCSL*HLDWPV
Trigger: CACTGGCCAGTCCAAGTGCAACAAACTACACCTGGT...GCCTAAAGAAGACAACTCCTTCAGCTGCTGCAGCTCAGATGCTAAGGCACCGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
CDS-3UTR CAA 90 bp GAAGTGTTAGTGACGATTACAACAGGAACACATCCAGCTGCAGTGAGGCACAGGGTAGGAACCCGTGTGTaGGACCTCCAGGGGTTCCAG +
Preference number: 5 (lower is better)
Translates to: EVLVTITTGTHPAAVRHRVGTRV*DLQGFQ
Trigger: CTGGAACCCCTGGAGGTCCAACACACGGGTTCCTAC...CCTGTGCCTCACTGCAGCTGGATGTGTTCCTGTTGTAATCGTCACTAACACTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR CAA 90 bp ATTTCTCCCCAGGGCCAGAAAGTGGGTAGTAAGATTAGTGAACGGGGTAGAGTAGAGGAGGAGCCTGTGTaGCTGGGGTCCCTGCATCTC +
Preference number: 5 (lower is better)
Translates to: ISPQGQKVGSKISERGRVEEEPV*LGSLHL
Trigger: GAGATGCAGGGACCCCAGCAACACAGGCTCCTCCTC...TACTCTACCCCGTTCACTAATCTTACTACCCACTTTCTGGCCCTGGGGAGAAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR CAA 90 bp CTTCTGTCCTTCCTGGGGATTTCTCCCCAGGGCCAGAAAGTGGGTAGTAAGATTGTGACCGAGTCGCTGTaGTTTGGAGGAGGAGCCTGT +
Preference number: 5 (lower is better)
Translates to: LLSFLGISPQGQKVGSKIVTESL*FGGGAC
Trigger: ACAGGCTCCTCCTCCAAACAACAGCGACTCGGTCAC...AATCTTACTACCCACTTTCTGGCCCTGGGGAGAAATCCCCAGGAAGGACAGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR CAA 90 bp CAGATAGTCAGGCAGAAGCCTAGTCCCAAGGCGACCCGCTTGCCGATGGTCTCTAACTCTGGTCAGAAGTaGTTACTGAGGGGTGAGAAC +
Preference number: 5 (lower is better)
Translates to: QIVRQKPSPKATRLPMVSNSGQK*LLRGEN
Trigger: GTTCTCACCCCTCAGTAACAACTTCTGACCAGAGTT...AGAGACCATCGGCAAGCGGGTCGCCTTGGGACTAGGCTTCTGCCTGACTATCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187989.7
CDS-3UTR CAA 90 bp AGCGTCCAGGACCCCCGAGGGAAGGCACCATCTCCACAGAAGGTCCAACATCTTGTCATGGTCACAGAATaGTTCTTTTCCACCTCTGTG +
Preference number: 5 (lower is better)
Translates to: SVQDPRGKAPSPQKVQHLVMVTE*FFSTSV
Trigger: CACAGAGGTGGAAAAGAACAATTCTGTGACCATGAC...AAGATGTTGGACCTTCTGTGGAGATGGTGCCTTCCCTCGGGGGTCCTGGACGCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR CAA 90 bp CAGGGAGCTGCCGGTGCCTTAGCATCTGAGCTGCAGCAGCTGAAGGAGTTGTCTGTCATGGTCACAGAATaGTTCTTTTCCACCTCTGTG +
Preference number: 5 (lower is better)
Translates to: QGAAGALASELQQLKELSVMVTE*FFSTSV
Trigger: CACAGAGGTGGAAAAGAACAATTCTGTGACCATGAC...AGACAACTCCTTCAGCTGCTGCAGCTCAGATGCTAAGGCACCGGCAGCTCCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
ENSMUST00000190646.7
CDS-3UTR CAA 90 bp CAGGGAGCTGCCGGTGCCTTAGCATCTGAGCTGCAGCAGCTGAAGGAGTTGTCTTTCCCTCTCATGTCCTaGGTCACTGAATGCAGAATT +
Preference number: 5 (lower is better)
Translates to: QGAAGALASELQQLKELSFPLMS*VTECRI
Trigger: AATTCTGCATTCAGTGACCAAGGACATGAGAGGGAA...AGACAACTCCTTCAGCTGCTGCAGCTCAGATGCTAAGGCACCGGCAGCTCCCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
ENSMUST00000190646.7
CDS-3UTR CAA 90 bp AGCATAATGGACATCCAGCTTAGCTTCCTGGTCTATCTTTCCATGACCCAGACGCCTGGGCCTATGTCGTaGGAAGCCTGGCACCGGTAT +
Preference number: 5 (lower is better)
Translates to: SIMDIQLSFLVYLSMTQTPGPMS*EAWHRY
Trigger: ATACCGGTGCCAGGCTTCCAACGACATAGGCCCAGG...CGTCTGGGTCATGGAAAGATAGACCAGGAAGCTAAGCTGGATGTCCATTATGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190455.2
ENSMUST00000190646.7
CDS-3UTR CAA 90 bp TTCTGTCCTTCCTGGGGATTTCTCCCCAGGGCCAGAAAGTGGGTAGTAAGATTACTCAGCACTCCGGGTTaGAGCACACTCCCAGAACCT +
Preference number: 5 (lower is better)
Translates to: FCPSWGFLPRARKWVVRLLSTPG*STLPEP
Trigger: AGGTTCTGGGAGTGTGCTCAAACCCGGAGTGCTGAG...TAATCTTACTACCCACTTTCTGGCCCTGGGGAGAAATCCCCAGGAAGGACAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR CAA 90 bp GACGATTACAACAGGAACACATCCAGCTGCAGTGAGGCACAGGATGGAGCAGATCACGAACACTTGTGGTaGCAGGCAGCACAGCTGACA +
Preference number: 5 (lower is better)
Translates to: DDYNRNTSSCSEAQDGADHEHLW*QAAQLT
Trigger: TGTCAGCTGTGCTGCCTGCAACCACAAGTGTTCGTG...ATCTGCTCCATCCTGTGCCTCACTGCAGCTGGATGTGTTCCTGTTGTAATCGTC
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR CAA 90 bp CGGGGTAGAGTATCAAGGGGTCAGAGAAGAAGTGTTAGTGACGATTACAACAGGGTAGGAACCCGTGTGTaGGACCTCCAGGGGTTCCAG +
Preference number: 5 (lower is better)
Translates to: RGRVSRGQRRSVSDDYNRVGTRV*DLQGFQ
Trigger: CTGGAACCCCTGGAGGTCCAACACACGGGTTCCTAC...CCTGTTGTAATCGTCACTAACACTTCTTCTCTGACCCCTTGATACTCTACCCCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR CAA 90 bp CTTATTGAATTATATATGTCCATTCCGTTCTGTCTGCTCAGCGTCCAGGACCCCGAGGAGGAGCCTGTGTaGCTGGGGTCCCTGCATCTC +
Preference number: 5 (lower is better)
Translates to: LIELYMSIPFCLLSVQDPEEEPV*LGSLHL
Trigger: GAGATGCAGGGACCCCAGCAACACAGGCTCCTCCTC...GGGGTCCTGGACGCTGAGCAGACAGAACGGAATGGACATATATAATTCAATAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR CAA 90 bp TCAGGCAGAAGCCTAGTCCCAAGGCGACCCGCTTGCCGATGGTCTCTGGACTGTATTTTCAGGGTACAATaGTCTATTCTGTTCCCCAGA +
Preference number: 5 (lower is better)
Translates to: SGRSLVPRRPACRWSLDCIFRVQ*SILFPR
Trigger: TCTGGGGAACAGAATAGACAATTGTACCCTGAAAAT...ACAGTCCAGAGACCATCGGCAAGCGGGTCGCCTTGGGACTAGGCTTCTGCCTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000190646.7
CDS-3UTR CAA 90 bp TCCTTCCTGGGGATTTCTCCCCAGGGCCAGAAAGTGGGTAGTAAGATTAGTGAAGTCCGTCCACTTTGGTaGGAAGGTGAGCTTGCTCTC +
Preference number: 5 (lower is better)
Translates to: SFLGISPQGQKVGSKISEVRPLW*EGELAL
Trigger: GAGAGCAAGCTCACCTTCCAACCAAAGTGGACGGAC...TTCACTAATCTTACTACCCACTTTCTGGCCCTGGGGAGAAATCCCCAGGAAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR CAA 90 bp GAAGTGTTAGTGACGATTACAACAGGAACACATCCAGCTGCAGTGAGGCACAGGGTCCGTCCACTTTGGTaGGAAGGTGAGCTTGCTCTC +
Preference number: 5 (lower is better)
Translates to: EVLVTITTGTHPAAVRHRVRPLW*EGELAL
Trigger: GAGAGCAAGCTCACCTTCCAACCAAAGTGGACGGAC...CCTGTGCCTCACTGCAGCTGGATGTGTTCCTGTTGTAATCGTCACTAACACTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR CAA 90 bp CGGGGTAGAGTATCAAGGGGTCAGAGAAGAAGTGTTAGTGACGATTACAACAGGCGCTCTGAGAGCACTTaGGAGGAGTGCTGGACTTGG +
Preference number: 5 (lower is better)
Translates to: RGRVSRGQRRSVSDDYNRRSEST*EECWTW
Trigger: CCAAGTCCAGCACTCCTCCAAAGTGCTCTCAGAGCG...CCTGTTGTAATCGTCACTAACACTTCTTCTCTGACCCCTTGATACTCTACCCCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR CAA 90 bp ATTTCTCCCCAGGGCCAGAAAGTGGGTAGTAAGATTAGTGAACGGGGTAGAGTACGCTCTGAGAGCACTTaGGAGGAGTGCTGGACTTGG +
Preference number: 5 (lower is better)
Translates to: ISPQGQKVGSKISERGRVRSEST*EECWTW
Trigger: CCAAGTCCAGCACTCCTCCAAAGTGCTCTCAGAGCG...TACTCTACCCCGTTCACTAATCTTACTACCCACTTTCTGGCCCTGGGGAGAAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR CAA 90 bp TACAACAGGAACACATCCAGCTGCAGTGAGGCACAGGATGGAGCAGATGGTGGTTGTAGTTTGTTGCACTaGGACTGGCCAGTGACTCAC +
Preference number: 5 (lower is better)
Translates to: YNRNTSSCSEAQDGADGGCSLLH*DWPVTH
Trigger: GTGAGTCACTGGCCAGTCCAAGTGCAACAAACTACA...ACCACCATCTGCTCCATCCTGTGCCTCACTGCAGCTGGATGTGTTCCTGTTGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR CAA 90 bp CTTCTGTCCTTCCTGGGGATTTCTCCCCAGGGCCAGAAAGTGGGTAGTAAGATTACCAGGTGTAGTTTGTaGCACTTGGACTGGCCAGTG +
Preference number: 5 (lower is better)
Translates to: LLSFLGISPQGQKVGSKITRCSL*HLDWPV
Trigger: CACTGGCCAGTCCAAGTGCAACAAACTACACCTGGT...AATCTTACTACCCACTTTCTGGCCCTGGGGAGAAATCCCCAGGAAGGACAGAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR CAA 90 bp GACGATTACAACAGGAACACATCCAGCTGCAGTGAGGCACAGGATGGAGCAGATACCAGGTGTAGTTTGTaGCACTTGGACTGGCCAGTG +
Preference number: 5 (lower is better)
Translates to: DDYNRNTSSCSEAQDGADTRCSL*HLDWPV
Trigger: CACTGGCCAGTCCAAGTGCAACAAACTACACCTGGT...ATCTGCTCCATCCTGTGCCTCACTGCAGCTGGATGTGTTCCTGTTGTAATCGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR CAA 90 bp CGAGGGAAGGCACCATCTCCACAGAAGGTCCAACATCTTTGTAGAAGAAAAGCCCACGAACACTTGTGGTaGCAGGCAGCACAGCTGACA +
Preference number: 5 (lower is better)
Translates to: RGKAPSPQKVQHLCRRKAHEHLW*QAAQLT
Trigger: TGTCAGCTGTGCTGCCTGCAACCACAAGTGTTCGTG...GGCTTTTCTTCTACAAAGATGTTGGACCTTCTGTGGAGATGGTGCCTTCCCTCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR CAA 90 bp TTTCTCCCCAGGGCCAGAAAGTGGGTAGTAAGATTAGTGAACGGGGTAGAGTATGTGACCGAGTCGCTGTaGTTTGGAGGAGGAGCCTGT +
Preference number: 5 (lower is better)
Translates to: FLPRARKWVVRLVNGVEYVTESL*FGGGAC
Trigger: ACAGGCTCCTCCTCCAAACAACAGCGACTCGGTCAC...ATACTCTACCCCGTTCACTAATCTTACTACCCACTTTCTGGCCCTGGGGAGAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR CAA 90 bp CTTCTGTCCTTCCTGGGGATTTCTCCCCAGGGCCAGAAAGTGGGTAGTAAGATTTCAGTCTTTGTGGCGTaGTACAGGACAGTTCCTGTG +
Preference number: 5 (lower is better)
Translates to: LLSFLGISPQGQKVGSKISVFVA*YRTVPV
Trigger: CACAGGAACTGTCCTGTACAACGCCACAAAGACTGA...AATCTTACTACCCACTTTCTGGCCCTGGGGAGAAATCCCCAGGAAGGACAGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR CAA 90 bp GACATCCAGCTTAGCTTCCTGGTCTATCTTTCCATGACCCAGACGGTTCTCTGCTCAGTCTTTGTGGCGTaGTACAGGACAGTTCCTGTG +
Preference number: 5 (lower is better)
Translates to: DIQLSFLVYLSMTQTVLCSVFVA*YRTVPV
Trigger: CACAGGAACTGTCCTGTACAACGCCACAAAGACTGA...GCAGAGAACCGTCTGGGTCATGGAAAGATAGACCAGGAAGCTAAGCTGGATGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190646.7
CDS-3UTR CAA 90 bp CTTATTGAATTATATATGTCCATTCCGTTCTGTCTGCTCAGCGTCCAGGACCCCCGCTCTGAGAGCACTTaGGAGGAGTGCTGGACTTGG +
Preference number: 5 (lower is better)
Translates to: LIELYMSIPFCLLSVQDPRSEST*EECWTW
Trigger: CCAAGTCCAGCACTCCTCCAAAGTGCTCTCAGAGCG...GGGGTCCTGGACGCTGAGCAGACAGAACGGAATGGACATATATAATTCAATAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR CAA 90 bp GACGATTACAACAGGAACACATCCAGCTGCAGTGAGGCACAGGATGGAGCAGATTGTAGTTTGTTGCACTaGGACTGGCCAGTGACTCAC +
Preference number: 5 (lower is better)
Translates to: DDYNRNTSSCSEAQDGADCSLLH*DWPVTH
Trigger: GTGAGTCACTGGCCAGTCCAAGTGCAACAAACTACA...ATCTGCTCCATCCTGTGCCTCACTGCAGCTGGATGTGTTCCTGTTGTAATCGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR CAA 90 bp ACCCCCGAGGGAAGGCACCATCTCCACAGAAGGTCCAACATCTTTGTAGAAGAATGTAGTTTGTTGCACTaGGACTGGCCAGTGACTCAC +
Preference number: 5 (lower is better)
Translates to: TPEGRHHLHRRSNIFVEECSLLH*DWPVTH
Trigger: GTGAGTCACTGGCCAGTCCAAGTGCAACAAACTACA...TTCTTCTACAAAGATGTTGGACCTTCTGTGGAGATGGTGCCTTCCCTCGGGGGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR CAA 90 bp GACCCCCGAGGGAAGGCACCATCTCCACAGAAGGTCCAACATCTTTGTAGAAGATTGGGTAGTGGAGTTTaGTACTTGCAAGGAATCCTG +
Preference number: 5 (lower is better)
Translates to: DPRGKAPSPQKVQHLCRRLGSGV*YLQGIL
Trigger: CAGGATTCCTTGCAAGTACAAAACTCCACTACCCAA...TCTTCTACAAAGATGTTGGACCTTCTGTGGAGATGGTGCCTTCCCTCGGGGGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR CAA 90 bp TCCTTACTTCTGTCCTTCCTGGGGATTTCTCCCCAGGGCCAGAAAGTGGGTAGTTTGGGTAGTGGAGTTTaGTACTTGCAAGGAATCCTG +
Preference number: 5 (lower is better)
Translates to: SLLLSFLGISPQGQKVGSLGSGV*YLQGIL
Trigger: CAGGATTCCTTGCAAGTACAAAACTCCACTACCCAA...ACTACCCACTTTCTGGCCCTGGGGAGAAATCCCCAGGAAGGACAGAAGTAAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR CAA 90 bp TTATATATGTCCATTCCGTTCTGTCTGCTCAGCGTCCAGGACCCCCGAGGGAAGTTGGGTAGTGGAGTTTaGTACTTGCAAGGAATCCTG +
Preference number: 5 (lower is better)
Translates to: LYMSIPFCLLSVQDPRGKLGSGV*YLQGIL
Trigger: CAGGATTCCTTGCAAGTACAAAACTCCACTACCCAA...CTTCCCTCGGGGGTCCTGGACGCTGAGCAGACAGAACGGAATGGACATATATAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR CAA 90 bp ACAGCTGACAGGCATGGAATCCCATGTCACTTTCTGAATCCTCAGCACTCCGGGGTTCCTGTGAATTTCTaGGTGGCCTTGTCAAACTCA +
Preference number: 5 (lower is better)
Translates to: TADRHGIPCHFLNPQHSGVPVNF*VALSNS
Trigger: TGAGTTTGACAAGGCCACCAAGAAATTCACAGGAAC...CCCGGAGTGCTGAGGATTCAGAAAGTGACATGGGATTCCATGCCTGTCAGCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190646.7
CDS-3UTR CAA 90 bp TACAACAGGAACACATCCAGCTGCAGTGAGGCACAGGATGGAGCAGATGGTGGTTTCCCTCTCATGTCCTaGGTCACTGAATGCAGAATT +
Preference number: 5 (lower is better)
Translates to: YNRNTSSCSEAQDGADGGFPLMS*VTECRI
Trigger: AATTCTGCATTCAGTGACCAAGGACATGAGAGGGAA...ACCACCATCTGCTCCATCCTGTGCCTCACTGCAGCTGGATGTGTTCCTGTTGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR CAA 90 bp TTTCTCCCCAGGGCCAGAAAGTGGGTAGTAAGATTAGTGAACGGGGTAGAGTATACCAGGTGTAGTTTGTaGCACTTGGACTGGCCAGTG +
Preference number: 5 (lower is better)
Translates to: FLPRARKWVVRLVNGVEYTRCSL*HLDWPV
Trigger: CACTGGCCAGTCCAAGTGCAACAAACTACACCTGGT...ATACTCTACCCCGTTCACTAATCTTACTACCCACTTTCTGGCCCTGGGGAGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR CAA 90 bp TTTCTCCCCAGGGCCAGAAAGTGGGTAGTAAGATTAGTGAACGGGGTAGAGTATTCAGTCTTTGTGGCGTaGTACAGGACAGTTCCTGTG +
Preference number: 5 (lower is better)
Translates to: FLPRARKWVVRLVNGVEYSVFVA*YRTVPV
Trigger: CACAGGAACTGTCCTGTACAACGCCACAAAGACTGA...ATACTCTACCCCGTTCACTAATCTTACTACCCACTTTCTGGCCCTGGGGAGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR CAA 90 bp GCCGGTGCCTTAGCATCTGAGCTGCAGCAGCTGAAGGAGTTGTCTTCTTTAGGCATTTTCAGGGTACAATaGTCTATTCTGTTCCCCAGA +
Preference number: 5 (lower is better)
Translates to: AGALASELQQLKELSSLGIFRVQ*SILFPR
Trigger: TCTGGGGAACAGAATAGACAATTGTACCCTGAAAAT...GCCTAAAGAAGACAACTCCTTCAGCTGCTGCAGCTCAGATGCTAAGGCACCGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
ENSMUST00000190646.7
CDS-3UTR CAA 90 bp GTAGAGTATCAAGGGGTCAGAGAAGAAGTGTTAGTGACGATTACAACAGGAACACGCTCTGAGAGCACTTaGGAGGAGTGCTGGACTTGG +
Preference number: 5 (lower is better)
Translates to: VEYQGVREEVLVTITTGTRSEST*EECWTW
Trigger: CCAAGTCCAGCACTCCTCCAAAGTGCTCTCAGAGCG...TGTTCCTGTTGTAATCGTCACTAACACTTCTTCTCTGACCCCTTGATACTCTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR CAA 90 bp GACATCCAGCTTAGCTTCCTGGTCTATCTTTCCATGACCCAGACGGTTCTCTGCGTCATGGTCACAGAATaGTTCTTTTCCACCTCTGTG +
Preference number: 5 (lower is better)
Translates to: DIQLSFLVYLSMTQTVLCVMVTE*FFSTSV
Trigger: CACAGAGGTGGAAAAGAACAATTCTGTGACCATGAC...GCAGAGAACCGTCTGGGTCATGGAAAGATAGACCAGGAAGCTAAGCTGGATGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000190455.2
ENSMUST00000190646.7
CDS-3UTR CAA 90 bp GATTGGTGTGAAGCTCTGAATCACTGTGGTCACCGCCTTGGGAGCATAATGGACGTCATGGTCACAGAATaGTTCTTTTCCACCTCTGTG +
Preference number: 5 (lower is better)
Translates to: DWCEALNHCGHRLGSIMDVMVTE*FFSTSV
Trigger: CACAGAGGTGGAAAAGAACAATTCTGTGACCATGAC...GTCCATTATGCTCCCAAGGCGGTGACCACAGTGATTCAGAGCTTCACACCAATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000190455.2
ENSMUST00000190646.7
CDS-3UTR CAA 90 bp TTGTACCTACAGACCAGGGTCACACTGTCTCCTTCCAGGATTGGTGTGAAGCTCTTCCCTCTCATGTCCTaGGTCACTGAATGCAGAATT +
Preference number: 5 (lower is better)
Translates to: LYLQTRVTLSPSRIGVKLFPLMS*VTECRI
Trigger: AATTCTGCATTCAGTGACCAAGGACATGAGAGGGAA...GAGCTTCACACCAATCCTGGAAGGAGACAGTGTGACCCTGGTCTGTAGGTACAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190455.2
ENSMUST00000190646.7
CDS-3UTR CAA 90 bp TTTCTCCCCAGGGCCAGAAAGTGGGTAGTAAGATTAGTGAACGGGGTAGAGTATTGTAGTTTGTTGCACTaGGACTGGCCAGTGACTCAC +
Preference number: 5 (lower is better)
Translates to: FLPRARKWVVRLVNGVEYCSLLH*DWPVTH
Trigger: GTGAGTCACTGGCCAGTCCAAGTGCAACAAACTACA...ATACTCTACCCCGTTCACTAATCTTACTACCCACTTTCTGGCCCTGGGGAGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
CDS-3UTR CAA 90 bp TCCTTCCTGGGGATTTCTCCCCAGGGCCAGAAAGTGGGTAGTAAGATTAGTGAAGTTCCTGTGAATTTCTaGGTGGCCTTGTCAAACTCA +
Preference number: 5 (lower is better)
Translates to: SFLGISPQGQKVGSKISEVPVNF*VALSNS
Trigger: TGAGTTTGACAAGGCCACCAAGAAATTCACAGGAAC...TTCACTAATCTTACTACCCACTTTCTGGCCCTGGGGAGAAATCCCCAGGAAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR CAA 90 bp TTCTGTCCTTCCTGGGGATTTCTCCCCAGGGCCAGAAAGTGGGTAGTAAGATTAGTTCCTGTGAATTTCTaGGTGGCCTTGTCAAACTCA +
Preference number: 5 (lower is better)
Translates to: FCPSWGFLPRARKWVVRLVPVNF*VALSNS
Trigger: TGAGTTTGACAAGGCCACCAAGAAATTCACAGGAAC...TAATCTTACTACCCACTTTCTGGCCCTGGGGAGAAATCCCCAGGAAGGACAGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR CAA 90 bp TCCTTACTTCTGTCCTTCCTGGGGATTTCTCCCCAGGGCCAGAAAGTGGGTAGTATTTTCAGGGTACAATaGTCTATTCTGTTCCCCAGA +
Preference number: 5 (lower is better)
Translates to: SLLLSFLGISPQGQKVGSIFRVQ*SILFPR
Trigger: TCTGGGGAACAGAATAGACAATTGTACCCTGAAAAT...ACTACCCACTTTCTGGCCCTGGGGAGAAATCCCCAGGAAGGACAGAAGTAAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR CAA 90 bp GAAGTGTTAGTGACGATTACAACAGGAACACATCCAGCTGCAGTGAGGCACAGGGTCATGGTCACAGAATaGTTCTTTTCCACCTCTGTG +
Preference number: 5 (lower is better)
Translates to: EVLVTITTGTHPAAVRHRVMVTE*FFSTSV
Trigger: CACAGAGGTGGAAAAGAACAATTCTGTGACCATGAC...CCTGTGCCTCACTGCAGCTGGATGTGTTCCTGTTGTAATCGTCACTAACACTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR CAA 90 bp TTCTTTAGGCTCAAGAACCTGAAACAGCAGCTGCTACCCACCTCAGTGCTTGAGTTCCCTCTCATGTCCTaGGTCACTGAATGCAGAATT +
Preference number: 5 (lower is better)
Translates to: FFRLKNLKQQLLPTSVLEFPLMS*VTECRI
Trigger: AATTCTGCATTCAGTGACCAAGGACATGAGAGGGAA...CTCAAGCACTGAGGTGGGTAGCAGCTGCTGTTTCAGGTTCTTGAGCCTAAAGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190646.7
CDS-3UTR CAA 90 bp ATTTCTCCCCAGGGCCAGAAAGTGGGTAGTAAGATTAGTGAACGGGGTAGAGTATTGGGTAGTGGAGTTTaGTACTTGCAAGGAATCCTG +
Preference number: 5 (lower is better)
Translates to: ISPQGQKVGSKISERGRVLGSGV*YLQGIL
Trigger: CAGGATTCCTTGCAAGTACAAAACTCCACTACCCAA...TACTCTACCCCGTTCACTAATCTTACTACCCACTTTCTGGCCCTGGGGAGAAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR CAA 90 bp TTTCCAATACAGGGTTTCCTTGAAAAACCCTGGCTGTCCTGGAACCCACTCTGTTTGGGTAGTGGAGTTTaGTACTTGCAAGGAATCCTG +
Preference number: 5 (lower is better)
Translates to: FPIQGFLEKPWLSWNPLCLGSGV*YLQGIL
Trigger: CAGGATTCCTTGCAAGTACAAAACTCCACTACCCAA...ACAGAGTGGGTTCCAGGACAGCCAGGGTTTTTCAAGGAAACCCTGTATTGGAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
ENSMUST00000190646.7
CDS-3UTR CAA 90 bp TTTCTCCCCAGGGCCAGAAAGTGGGTAGTAAGATTAGTGAACGGGGTAGAGTATGTTCCTGTGAATTTCTaGGTGGCCTTGTCAAACTCA +
Preference number: 5 (lower is better)
Translates to: FLPRARKWVVRLVNGVEYVPVNF*VALSNS
Trigger: TGAGTTTGACAAGGCCACCAAGAAATTCACAGGAAC...ATACTCTACCCCGTTCACTAATCTTACTACCCACTTTCTGGCCCTGGGGAGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR CAA 90 bp GCAGCTGAAGGAGTTGTCTTCTTTAGGCTCAAGAACCTGAAACAGCAGCTGCTAGTTCCTGTGAATTTCTaGGTGGCCTTGTCAAACTCA +
Preference number: 5 (lower is better)
Translates to: AAEGVVFFRLKNLKQQLLVPVNF*VALSNS
Trigger: TGAGTTTGACAAGGCCACCAAGAAATTCACAGGAAC...TAGCAGCTGCTGTTTCAGGTTCTTGAGCCTAAAGAAGACAACTCCTTCAGCTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190617.7
ENSMUST00000190646.7
CDS-3UTR CAA 90 bp GGTAGTAAGATTAGTGAACGGGGTAGAGTATCAAGGGGTCAGAGAAGAAGTGTTTCAGTCTTTGTGGCGTaGTACAGGACAGTTCCTGTG +
Preference number: 5 (lower is better)
Translates to: GSKISERGRVSRGQRRSVSVFVA*YRTVPV
Trigger: CACAGGAACTGTCCTGTACAACGCCACAAAGACTGA...AACACTTCTTCTCTGACCCCTTGATACTCTACCCCGTTCACTAATCTTACTACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR CAA 90 bp ATTTCTCCCCAGGGCCAGAAAGTGGGTAGTAAGATTAGTGAACGGGGTAGAGTATTCCCTCTCATGTCCTaGGTCACTGAATGCAGAATT +
Preference number: 5 (lower is better)
Translates to: ISPQGQKVGSKISERGRVFPLMS*VTECRI
Trigger: AATTCTGCATTCAGTGACCAAGGACATGAGAGGGAA...TACTCTACCCCGTTCACTAATCTTACTACCCACTTTCTGGCCCTGGGGAGAAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR CAA 90 bp TACCAACACTGTGAGACAATGGTGCCTCTAGGGACTGATTTGATAATGAGATTACACGAACACTTGTGGTaGCAGGCAGCACAGCTGACA +
Preference number: 5 (lower is better)
Translates to: YQHCETMVPLGTDLIMRLHEHLW*QAAQLT
Trigger: TGTCAGCTGTGCTGCCTGCAACCACAAGTGTTCGTG...TAATCTCATTATCAAATCAGTCCCTAGAGGCACCATTGTCTCACAGTGTTGGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019248.13
CDS-3UTR CAA 90 bp CTCCCCAGGGCCAGAAAGTGGGTAGTAAGATTAGTGAACGGGGTAGAGTATCAAATTTTCAGGGTACAATaGTCTATTCTGTTCCCCAGA +
Preference number: 5 (lower is better)
Translates to: LPRARKWVVRLVNGVEYQIFRVQ*SILFPR
Trigger: TCTGGGGAACAGAATAGACAATTGTACCCTGAAAAT...TTGATACTCTACCCCGTTCACTAATCTTACTACCCACTTTCTGGCCCTGGGGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS-3UTR CAA 90 bp GTAGAGTATCAAGGGGTCAGAGAAGAAGTGTTAGTGACGATTACAACAGGAACAGTCATGGTCACAGAATaGTTCTTTTCCACCTCTGTG +
Preference number: 5 (lower is better)
Translates to: VEYQGVREEVLVTITTGTVMVTE*FFSTSV
Trigger: CACAGAGGTGGAAAAGAACAATTCTGTGACCATGAC...TGTTCCTGTTGTAATCGTCACTAACACTTCTTCTCTGACCCCTTGATACTCTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000189718.7
ENSMUST00000190646.7
CDS TCA 72 bp GTGGGGATGATCCTGGCAGGCTGCGGGAGTAGACAGTaGGGGTGCTGGGTGGTGACTCTCCTGTGCCTATCC +
Preference number: 6 (lower is better)
Translates to: VGMILAGCGSRQ*GCWVVTLLCLS
Trigger: GGATAGGCACAGGAGAGTCACCACCCAGCACCCTCACTGTCTACTCCCGCAGCCTGCCAGGATCATCCCCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000214289.2
CDS TCA 72 bp CAGGCTGCGGGAGTAGACAGTGAGGGTGCTGGGTGGTaGCTCTCCTGTGCCTATCCCATTGGTCCCTTTGCA +
Preference number: 6 (lower is better)
Translates to: QAAGVDSEGAGW*LSCAYPIGPFA
Trigger: TGCAAAGGGACCAATGGGATAGGCACAGGAGAGTCACCACCCAGCACCCTCACTGTCTACTCCCGCAGCCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214289.2
CDS TCA 72 bp TCTAAGGATCAAGGGGTTTGTGAGGGCAGGTGGGGATaGTCCTGGCAGGCTGCGGGAGTAGACAGTGAGGGT +
Preference number: 6 (lower is better)
Translates to: SKDQGVCEGRWG*SWQAAGVDSEG
Trigger: ACCCTCACTGTCTACTCCCGCAGCCTGCCAGGATCATCCCCACCTGCCCTCACAAACCCCTTGATCCTTAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000214289.2
CDS CAA 90 bp CCTCCCAGGCAAAGAGGGTTTGGGGATGGTCAACGGTCCAATCATTaGCTGAGCTGTACCGAGCCGAAGCCACGTGTCCTAGGATCAAGA +
Preference number: 6 (lower is better)
Translates to: PPRQRGFGDGQRSNH*LSCTEPKPRVLGSR
Trigger: TCTTGATCCTAGGACACGTGGCTTCGGCTCGGTACAGCTCAGCAAATGATTGGACCGTTGACCATCCCCAAACCCTCTTTGCCTGGGAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000019248.13
ENSMUST00000108125.9
ENSMUST00000186154.7
ENSMUST00000188157.7
ENSMUST00000189718.7
ENSMUST00000190617.7
ENSMUST00000190646.7
ENSMUST00000190753.2
ENSMUST00000214289.2
CDS TCA 72 bp AGGCCACAACTCTGGTCAGAAGTTGTTACTGAGGGGTaGGAACTTCCACTGGAAGTAGGAGAGGGAGACACT +
Preference number: 6 (lower is better)
Translates to: RPQLWSEVVTEG*ELPLEVGEGDT
Trigger: AGTGTCTCCCTCTCCTACTTCCAGTGGAAGTTCTCACCCCTCAGTAACAACTTCTGACCAGAGTTGTGGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187989.7