Pregenerated sensors for CD209E (Mus musculus)
Ensembl gene IDs: ENSMUSG00000040197Ensembl transcript IDs: ENSMUST00000033888.5
Found 54 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ATGAGGCTTCCAAGTAAAAGTACAAATAGCAGTGGAAAGATAGCATaGCTGAGTCAGAAGCTTACAAACACCCAGCAGAAAATGACCAAG | + |
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Preference number: 1 (lower is better) Translates to: MRLPSKSTNSSGKIA*LSQKLTNTQQKMTK Trigger: CTTGGTCATTTTCTGCTGGGTGTTTGTAAGCTTCTGACTCAGTCATGCTATCTTTCCACTGCTATTTGTACTTTTACTTGGAAGCCTCAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033888.5 |
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| 3UTR-3UTR TCA 90 bp | ACCAAGGAAGTTCCATTAAGGCAGTTAGAAGAGCAAAGTGATAACCCTTTAGGCTGGGAAACGCATGAGTaGAAGTCCACTCCCCAACTG | + |
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Preference number: 2 (lower is better) Translates to: TKEVPLRQLEEQSDNPLGWETHE*KSTPQL Trigger: CAGTTGGGGAGTGGACTTTCACTCATGCGTTTCCCA...GCCTAAAGGGTTATCACTTTGCTCTTCTAACTGCCTTAATGGAACTTCCTTGGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033888.5 |
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| 3UTR CAA 90 bp | CAGAAACTGATTGAGGAAGTTGAGGCAAGCAACTGGAGTTTGGTATaGAGCTGTCTCTCCATTGCCGAGCTTTTCATGGGTGAATTTCTG | + |
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Preference number: 2 (lower is better) Translates to: QKLIEEVEASNWSLV*SCLSIAELFMGEFL Trigger: CAGAAATTCACCCATGAAAAGCTCGGCAATGGAGAGACAGCTCAATACCAAACTCCAGTTGCTTGCCTCAACTTCCTCAATCAGTTTCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033888.5 |
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| 3UTR-3UTR TCA 90 bp | ATGACCAAGGAAGTTCCATTAAGGCAGTTAGAAGAGCAAAGTGATAACCCTTTAGAAAGACAGGGGAGATaGATGGAACACACCCAGCCC | + |
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Preference number: 2 (lower is better) Translates to: MTKEVPLRQLEEQSDNPLERQGR*MEHTQP Trigger: GGGCTGGGTGTGTTCCATTCATCTCCCCTGTCTTTC...TAAAGGGTTATCACTTTGCTCTTCTAACTGCCTTAATGGAACTTCCTTGGTCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033888.5 |
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| 3UTR CAA 90 bp | AACTGGAGTTCCCAACACAAGGACATCTGGGAAGAGCAGTGTCCCTaGATGAGGCTTCCAAGTAAAAGTACAAATAGCAGTGGAAAGATA | + |
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Preference number: 2 (lower is better) Translates to: NWSSQHKDIWEEQCP*MRLPSKSTNSSGKI Trigger: TATCTTTCCACTGCTATTTGTACTTTTACTTGGAAGCCTCATCAAGGGACACTGCTCTTCCCAGATGTCCTTGTGTTGGGAACTCCAGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033888.5 |
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| 3UTR-3UTR GCA 90 bp | TATAGTAATGTAAACCCTCTGACCTCAACAAGAAAGACAGGGGAGATGAATGGAGGGATGTTTAGGCTGTaGAAACTGCAGAGAACGTCT | + |
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Preference number: 2 (lower is better) Translates to: YSNVNPLTSTRKTGEMNGGMFRL*KLQRTS Trigger: AGACGTTCTCTGCAGTTTGCACAGCCTAAACATCCC...TCCATTCATCTCCCCTGTCTTTCTTGTTGAGGTCAGAGGGTTTACATTACTATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033888.5 |
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| 3UTR-3UTR GCA 90 bp | GAAATGACATCCTCAAATCTGGGTTCCCACAAAAGTCAGCAGAAACTGATTGAGGCAAAACCACAATTATaGGTTAGGAGTTTGGAGACA | + |
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Preference number: 2 (lower is better) Translates to: EMTSSNLGSHKSQQKLIEAKPQL*VRSLET Trigger: TGTCTCCAAACTCCTAACGCATAATTGTGGTTTTGC...CTCAATCAGTTTCTGCTGACTTTTGTGGGAACCCAGATTTGAGGATGTCATTTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033888.5 |
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| 3UTR-3UTR TCA 90 bp | TGTTTACTCTTAAGCTGTCTTGCTAATCTCTTTCTTCCCTGTTACACAGTTGGGGACAAGGTCTTTGAATaGCACTTTGAGGTAAACATG | + |
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Preference number: 2 (lower is better) Translates to: CLLLSCLANLFLPCYTVGDKVFE*HFEVNM Trigger: CATGTTTACCTCAAAGTGTCATTCAAAGACCTTGTC...CCCAACTGTGTAACAGGGAAGAAAGAGATTAGCAAGACAGCTTAAGAGTAAACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033888.5 |
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| 3UTR CCA 72 bp | AAGGCAGCCAACTGGAGTTCCCAACACAAGGACATCTaGGAAGAGCAGTGTCCCTTGATGAGGCTTCCAAGT | + |
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Preference number: 3 (lower is better) Translates to: KAANWSSQHKDI*EEQCPLMRLPS Trigger: ACTTGGAAGCCTCATCAAGGGACACTGCTCTTCCCAGATGTCCTTGTGTTGGGAACTCCAGTTGGCTGCCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033888.5 |
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| 3UTR CCA 72 bp | ATTCAATGGCAAAACCACAATTATGCGTTAGGAGTTTaGAGACATCAAAGGAAGGACCTCAGTGGTCTAGCA | + |
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Preference number: 3 (lower is better) Translates to: IQWQNHNYALGV*RHQRKDLSGLA Trigger: TGCTAGACCACTGAGGTCCTTCCTTTGATGTCTCCAAACTCCTAACGCATAATTGTGGTTTTGCCATTGAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033888.5 |
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| 3UTR-3UTR CAA 90 bp | CAGTGGAAAGATAGCATGACTGAGTCAGAAGCTTACAAACACCCAGCAGAAAATTTATGCGTTAGGAGTTaGGAGACATCAAAGGAAGGA | + |
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Preference number: 3 (lower is better) Translates to: QWKDSMTESEAYKHPAENLCVRS*ETSKEG Trigger: TCCTTCCTTTGATGTCTCCAAACTCCTAACGCATAA...ATTTTCTGCTGGGTGTTTGTAAGCTTCTGACTCAGTCATGCTATCTTTCCACTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033888.5 |
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| CDS-3UTR TCA 90 bp | TCTGACCTCAACAAGAAAGACAGGGGAGATGAATGGAACACACCCAGCCCATCACCACTGAATTTCTTCTaGGCTGGGCATCTTGGAAAC | + |
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Preference number: 4 (lower is better) Translates to: SDLNKKDRGDEWNTPSPSPLNFF*AGHLGN Trigger: GTTTCCAAGATGCCCAGCTCAGAAGAAATTCAGTGG...TGATGGGCTGGGTGTGTTCCATTCATCTCCCCTGTCTTTCTTGTTGAGGTCAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033888.5 |
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| CDS-3UTR GCA 90 bp | ATGGCAAAACCACAATTATGCGTTAGGAGTTTGGAGACATCAAAGGAAGGACCTATGAGGAACAGCAGCTaGAACACCAGGGGAATGTGG | + |
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Preference number: 4 (lower is better) Translates to: MAKPQLCVRSLETSKEGPMRNSS*NTRGMW Trigger: CCACATTCCCCTGGTGTTGCAGCTGCTGTTCCTCAT...AGGTCCTTCCTTTGATGTCTCCAAACTCCTAACGCATAATTGTGGTTTTGCCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033888.5 |
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| CDS-3UTR TCA 90 bp | CAGTGGAAAGATAGCATGACTGAGTCAGAAGCTTACAAACACCCAGCAGAAAATCTTTTCAAAGCTGTCTaGCAGAGGCGAACCATCCAG | + |
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Preference number: 4 (lower is better) Translates to: QWKDSMTESEAYKHPAENLFKAV*QRRTIQ Trigger: CTGGATGGTTCGCCTCTGTCAGACAGCTTTGAAAAG...ATTTTCTGCTGGGTGTTTGTAAGCTTCTGACTCAGTCATGCTATCTTTCCACTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033888.5 |
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| CDS-3UTR TCA 90 bp | ACATCAAAGGAAGGACCTCAGTGGTCTAGCACTATAGTGACTAACAAAGGAGACTCCAGCCGTTATCTCTaGATTCCACACAGTCTTGTC | + |
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Preference number: 4 (lower is better) Translates to: TSKEGPQWSSTIVTNKGDSSRYL*IPHSLV Trigger: GACAAGACTGTGTGGAATTCAGAGATAACGGCTGGA...GTCTCCTTTGTTAGTCACTATAGTGCTAGACCACTGAGGTCCTTCCTTTGATGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033888.5 |
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| CDS-3UTR GCA 90 bp | GTTCCCAAGGGCGCAATGTGTTTACTCTTAAGCTGTCTTGCTAATCTCTTTCTTTTCTTGGAAGTCTGCTaGAGGAAGCTCTGCTCCTCA | + |
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Preference number: 4 (lower is better) Translates to: VPKGAMCLLLSCLANLFLFLEVC*RKLCSS Trigger: TGAGGAGCAGAGCTTCCTGCAGCAGACTTCCAAGAA...AAGAAAGAGATTAGCAAGACAGCTTAAGAGTAAACACATTGCGCCCTTGGGAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033888.5 |
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| CDS-3UTR CCA 90 bp | CAGTGGAAAGATAGCATGACTGAGTCAGAAGCTTACAAACACCCAGCAGAAAATCTTTGCAGGCAGTCATaGAGTCATGCCAATCCCGTT | + |
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Preference number: 4 (lower is better) Translates to: QWKDSMTESEAYKHPAENLCRQS*SHANPV Trigger: AACGGGATTGGCATGACTCCATGACTGCCTGCAAAG...ATTTTCTGCTGGGTGTTTGTAAGCTTCTGACTCAGTCATGCTATCTTTCCACTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033888.5 |
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| 3UTR CAA 72 bp | TCCCAACACAAGGACATCTGGGAAGAGCAGTGTCCCTaGATGAGGCTTCCAAGTAAAAGTACAAATAGCAGT | + |
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Preference number: 4 (lower is better) Translates to: SQHKDIWEEQCP*MRLPSKSTNSS Trigger: ACTGCTATTTGTACTTTTACTTGGAAGCCTCATCAAGGGACACTGCTCTTCCCAGATGTCCTTGTGTTGGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033888.5 |
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| CDS-3UTR CCA 90 bp | CAGTGGAAAGATAGCATGACTGAGTCAGAAGCTTACAAACACCCAGCAGAAAATAACACCAGGGGAATGTaGCCTTTGTCTAGAAATCCC | + |
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Preference number: 4 (lower is better) Translates to: QWKDSMTESEAYKHPAENNTRGM*PLSRNP Trigger: GGGATTTCTAGACAAAGGCCACATTCCCCTGGTGTT...ATTTTCTGCTGGGTGTTTGTAAGCTTCTGACTCAGTCATGCTATCTTTCCACTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033888.5 |
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| CDS-3UTR CCA 90 bp | ACCCAGCAGAAAATGACCAAGGAAGTTCCATTAAGGCAGTTAGAAGAGCAAAGTGGCATCTTGGAAACTTaGATGATGATGGCCACCAGA | + |
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Preference number: 4 (lower is better) Translates to: TQQKMTKEVPLRQLEEQSGILET*MMMATR Trigger: TCTGGTGGCCATCATCATCCAAGTTTCCAAGATGCC...ACTTTGCTCTTCTAACTGCCTTAATGGAACTTCCTTGGTCATTTTCTGCTGGGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033888.5 |
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| CDS-3UTR GCA 90 bp | TGTTTACTCTTAAGCTGTCTTGCTAATCTCTTTCTTCCCTGTTACACAGTTGGGTTTTTCTTGGAAGTCTaGTGCAGGAAGCTCTGCTCC | + |
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Preference number: 4 (lower is better) Translates to: CLLLSCLANLFLPCYTVGFFLEV*CRKLCS Trigger: GGAGCAGAGCTTCCTGCAGCAGACTTCCAAGAAAAA...CCCAACTGTGTAACAGGGAAGAAAGAGATTAGCAAGACAGCTTAAGAGTAAACA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033888.5 |
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| CDS-3UTR CCA 90 bp | AATTCCAGAGCCAGCTTCTCTGTGAGCTCAAACAGCATGGGACAATGTATCAATGAATTTCTTCTGAGCTaGGCATCTTGGAAACTTGGA | + |
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Preference number: 4 (lower is better) Translates to: NSRASFSVSSNSMGQCINEFLLS*ASWKLG Trigger: TCCAAGTTTCCAAGATGCCCAGCTCAGAAGAAATTC...ATTGATACATTGTCCCATGCTGTTTGAGCTCACAGAGAAGCTGGCTCTGGAATT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033888.5 |
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| CDS-3UTR CCA 90 bp | CAAAGTGTCAGGCATAAATTAAAGAGAGAAGCCCCTTTAAGGCAGCCAACTGGATTGATGATGACTAGTTaGGCTCCCATTTCTTTGCAG | + |
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Preference number: 4 (lower is better) Translates to: QSVRHKLKREAPLRQPTGLMMTS*APISLQ Trigger: CTGCAAAGAAATGGGAGCCCAACTAGTCATCATCAA...TCCAGTTGGCTGCCTTAAAGGGGCTTCTCTCTTTAATTTATGCCTGACACTTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033888.5 |
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| 3UTR CAA 72 bp | AATTCAATGGCAAAACCACAATTATGCGTTAGGAGTTaGGAGACATCAAAGGAAGGACCTCAGTGGTCTAGC | + |
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Preference number: 4 (lower is better) Translates to: NSMAKPQLCVRS*ETSKEGPQWSS Trigger: GCTAGACCACTGAGGTCCTTCCTTTGATGTCTCCAAACTCCTAACGCATAATTGTGGTTTTGCCATTGAATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033888.5 |
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| CDS-3UTR TCA 90 bp | ATGGCAAAACCACAATTATGCGTTAGGAGTTTGGAGACATCAAAGGAAGGACCTAAGCTCTGCTCCTCATaGCTTTTGATGATGACTAGT | + |
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Preference number: 4 (lower is better) Translates to: MAKPQLCVRSLETSKEGPKLCSS*LLMMTS Trigger: ACTAGTCATCATCAAAAGTCATGAGGAGCAGAGCTT...AGGTCCTTCCTTTGATGTCTCCAAACTCCTAACGCATAATTGTGGTTTTGCCAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033888.5 |
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| CDS-3UTR CCA 90 bp | ACCAAGGAAGTTCCATTAAGGCAGTTAGAAGAGCAAAGTGATAACCCTTTAGGCTGTAGCTATTTTTCTTaGAAGTCTGCTGCAGGAAGC | + |
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Preference number: 4 (lower is better) Translates to: TKEVPLRQLEEQSDNPLGCSYFS*KSAAGS Trigger: GCTTCCTGCAGCAGACTTCCAAGAAAAATAGCTACA...GCCTAAAGGGTTATCACTTTGCTCTTCTAACTGCCTTAATGGAACTTCCTTGGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033888.5 |
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| CDS-3UTR CCA 90 bp | CAGTGGAAAGATAGCATGACTGAGTCAGAAGCTTACAAACACCCAGCAGAAAATACTTCAGATTTCAGTTaGCTCAGGTCCTTGTACATT | + |
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Preference number: 4 (lower is better) Translates to: QWKDSMTESEAYKHPAENTSDFS*LRSLYI Trigger: AATGTACAAGGACCTGAGCCAACTGAAATCTGAAGT...ATTTTCTGCTGGGTGTTTGTAAGCTTCTGACTCAGTCATGCTATCTTTCCACTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033888.5 |
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| CDS-3UTR TCA 90 bp | ATGACCAAGGAAGTTCCATTAAGGCAGTTAGAAGAGCAAAGTGATAACCCTTTAAGTAACAGTTTCCATTaGAGAACGTCCAATCCCAAG | + |
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Preference number: 4 (lower is better) Translates to: MTKEVPLRQLEEQSDNPLSNSFH*RTSNPK Trigger: CTTGGGATTGGACGTTCTTCAATGGAAACTGTTACT...TAAAGGGTTATCACTTTGCTCTTCTAACTGCCTTAATGGAACTTCCTTGGTCAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033888.5 |
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| CDS-3UTR CCA 90 bp | TGTTTACTCTTAAGCTGTCTTGCTAATCTCTTTCTTCCCTGTTACACAGTTGGGTCCTTTGTTCACATTTaGCATCATTCCAGCCGTTAT | + |
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Preference number: 4 (lower is better) Translates to: CLLLSCLANLFLPCYTVGSFVHI*HHSSRY Trigger: ATAACGGCTGGAATGATGCCAAATGTGAACAAAGGA...CCCAACTGTGTAACAGGGAAGAAAGAGATTAGCAAGACAGCTTAAGAGTAAACA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033888.5 |
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| CDS-3UTR CCA 90 bp | ATGACCAAGGAAGTTCCATTAAGGCAGTTAGAAGAGCAAAGTGATAACCCTTTAAATCCCGTTGTGACTTaGAGAAAAAGTAACAGTTTC | + |
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Preference number: 4 (lower is better) Translates to: MTKEVPLRQLEEQSDNPLNPVVT*RKSNSF Trigger: GAAACTGTTACTTTTTCTCCAAGTCACAACGGGATT...TAAAGGGTTATCACTTTGCTCTTCTAACTGCCTTAATGGAACTTCCTTGGTCAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033888.5 |
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| CDS-3UTR CAA 90 bp | TCTGACCTCAACAAGAAAGACAGGGGAGATGAATGGAACACACCCAGCCCATCAAACTTCAGATTTCAGTaGGCTCAGGTCCTTGTACAT | + |
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Preference number: 5 (lower is better) Translates to: SDLNKKDRGDEWNTPSPSNFRFQ*AQVLVH Trigger: ATGTACAAGGACCTGAGCCAACTGAAATCTGAAGTT...TGATGGGCTGGGTGTGTTCCATTCATCTCCCCTGTCTTTCTTGTTGAGGTCAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033888.5 |
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| CDS-3UTR CAA 90 bp | GTTCCCAAGGGCGCAATGTGTTTACTCTTAAGCTGTCTTGCTAATCTCTTTCTTTGGGCTCCCATTTCTTaGCAGGCAGTCATGGAGTCA | + |
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Preference number: 5 (lower is better) Translates to: VPKGAMCLLLSCLANLFLWAPIS*QAVMES Trigger: TGACTCCATGACTGCCTGCAAAGAAATGGGAGCCCA...AAGAAAGAGATTAGCAAGACAGCTTAAGAGTAAACACATTGCGCCCTTGGGAAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033888.5 |
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| CDS-3UTR CAA 90 bp | AGAGCCAGCTTCTCTGTGAGCTCAAACAGCATGGGACAATGTATCAATGTAATGTGTCCCCCAACATTGTaGGGCTGTCCTTTCTTCCAA | + |
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Preference number: 5 (lower is better) Translates to: RASFSVSSNSMGQCINVMCPPTL*GCPFFQ Trigger: TTGGAAGAAAGGACAGCCCAACAATGTTGGGGGACA...CATTACATTGATACATTGTCCCATGCTGTTTGAGCTCACAGAGAAGCTGGCTCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033888.5 |
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| CDS-3UTR CAA 90 bp | AATTCCAGAGCCAGCTTCTCTGTGAGCTCAAACAGCATGGGACAATGTATCAATTCTTGTCCCCCAACATaGTTGGGCTGTCCTTTCTTC | + |
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Preference number: 5 (lower is better) Translates to: NSRASFSVSSNSMGQCINSCPPT*LGCPFF Trigger: GAAGAAAGGACAGCCCAACAATGTTGGGGGACAAGA...ATTGATACATTGTCCCATGCTGTTTGAGCTCACAGAGAAGCTGGCTCTGGAATT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033888.5 |
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| CDS-3UTR CAA 90 bp | GAAGCTTACAAACACCCAGCAGAAAATGACCAAGGAAGTTCCATTAAGGCAGTTAGGGGAATGTGGCCTTaGTCTAGAAATCCCAGAGAG | + |
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Preference number: 5 (lower is better) Translates to: EAYKHPAENDQGSSIKAVRGMWP*SRNPRE Trigger: CTCTCTGGGATTTCTAGACAAAGGCCACATTCCCCT...AACTGCCTTAATGGAACTTCCTTGGTCATTTTCTGCTGGGTGTTTGTAAGCTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033888.5 |
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| CDS-3UTR CAA 90 bp | ACCCAGCAGAAAATGACCAAGGAAGTTCCATTAAGGCAGTTAGAAGAGCAAAGTTACCATTCTCCTTCCTaGTTCAGATCTGACAGCCCC | + |
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Preference number: 5 (lower is better) Translates to: TQQKMTKEVPLRQLEEQSYHSPS*FRSDSP Trigger: GGGGCTGTCAGATCTGAACAAGGAAGGAGAATGGTA...ACTTTGCTCTTCTAACTGCCTTAATGGAACTTCCTTGGTCATTTTCTGCTGGGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033888.5 |
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| CDS TCA 90 bp | CTTGTACATTTTCTCTTGCTTTGTGTGTTCCCACTGAATTTCTTCTaGGCTGGGCATCTTGGAAACTTGGATGATGATGGCCACCAGAAG | + |
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Preference number: 5 (lower is better) Translates to: LVHFLLLCVFPLNFF*AGHLGNLDDDGHQK Trigger: CTTCTGGTGGCCATCATCATCCAAGTTTCCAAGATGCCCAGCTCAGAAGAAATTCAGTGGGAACACACAAAGCAAGAGAAAATGTACAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033888.5 |
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| CDS TCA 90 bp | AGAATTTCCTTTGTTCACATTTGGCATCATTCCAGCCGTTATCTCTaGATTCCACACAGTCTTGTCCCCCAACATTGTTGGGCTGTCCTT | + |
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Preference number: 5 (lower is better) Translates to: RISFVHIWHHSSRYL*IPHSLVPQHCWAVL Trigger: AAGGACAGCCCAACAATGTTGGGGGACAAGACTGTGTGGAATTCAGAGATAACGGCTGGAATGATGCCAAATGTGAACAAAGGAAATTCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033888.5 |
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| CDS-3UTR CAA 90 bp | ACCAAGGAAGTTCCATTAAGGCAGTTAGAAGAGCAAAGTGATAACCCTTTAGGCTCTGAGCTGGGCATCTaGGAAACTTGGATGATGATG | + |
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Preference number: 5 (lower is better) Translates to: TKEVPLRQLEEQSDNPLGSELGI*ETWMMM Trigger: CATCATCATCCAAGTTTCCAAGATGCCCAGCTCAGA...GCCTAAAGGGTTATCACTTTGCTCTTCTAACTGCCTTAATGGAACTTCCTTGGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033888.5 |
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| CDS-3UTR CAA 90 bp | CAAAGTGTCAGGCATAAATTAAAGAGAGAAGCCCCTTTAAGGCAGCCAACTGGACTTGTACATTTTCTCTaGCTTTGTGTGTTCCCACTG | + |
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Preference number: 5 (lower is better) Translates to: QSVRHKLKREAPLRQPTGLVHFL*LCVFPL Trigger: CAGTGGGAACACACAAAGCAAGAGAAAATGTACAAG...TCCAGTTGGCTGCCTTAAAGGGGCTTCTCTCTTTAATTTATGCCTGACACTTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033888.5 |
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| CDS-3UTR CAA 90 bp | ATAGAAATGACATCCTCAAATCTGGGTTCCCACAAAAGTCAGCAGAAACTGATTGAATTCCACACAGTCTaGTCCCCCAACATTGTTGGG | + |
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Preference number: 5 (lower is better) Translates to: IEMTSSNLGSHKSQQKLIEFHTV*SPNIVG Trigger: CCCAACAATGTTGGGGGACAAGACTGTGTGGAATTC...AATCAGTTTCTGCTGACTTTTGTGGGAACCCAGATTTGAGGATGTCATTTCTAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033888.5 |
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| CDS-3UTR CAA 90 bp | GAAGCTTACAAACACCCAGCAGAAAATGACCAAGGAAGTTCCATTAAGGCAGTTAGTTGGCTCAGGTCCTaGTACATTTTCTCTTGCTTT | + |
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Preference number: 5 (lower is better) Translates to: EAYKHPAENDQGSSIKAVSWLRS*YIFSCF Trigger: AAAGCAAGAGAAAATGTACAAGGACCTGAGCCAACT...AACTGCCTTAATGGAACTTCCTTGGTCATTTTCTGCTGGGTGTTTGTAAGCTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033888.5 |
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| CDS-3UTR CAA 90 bp | GAAATGACATCCTCAAATCTGGGTTCCCACAAAAGTCAGCAGAAACTGATTGAGACATTTTCTCTTGCTTaGTGTGTTCCCACTGAATTT | + |
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Preference number: 5 (lower is better) Translates to: EMTSSNLGSHKSQQKLIETFSLA*CVPTEF Trigger: AAATTCAGTGGGAACACACAAAGCAAGAGAAAATGT...CTCAATCAGTTTCTGCTGACTTTTGTGGGAACCCAGATTTGAGGATGTCATTTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033888.5 |
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| CDS CCA 72 bp | AGAATGAGGAACAGCAGCTGCAACACCAGGGGAATGTaGCCTTTGTCTAGAAATCCCAGAGAGCCCATCTGT | + |
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Preference number: 6 (lower is better) Translates to: RMRNSSCNTRGM*PLSRNPREPIC Trigger: ACAGATGGGCTCTCTGGGATTTCTAGACAAAGGCCACATTCCCCTGGTGTTGCAGCTGCTGTTCCTCATTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033888.5 |
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| CDS GCA 72 bp | ACCAGAAGTCCAGTGAAGAGAATGAGGAACAGCAGCTaGAACACCAGGGGAATGTGGCCTTTGTCTAGAAAT | + |
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Preference number: 6 (lower is better) Translates to: TRSPVKRMRNSS*NTRGMWPLSRN Trigger: ATTTCTAGACAAAGGCCACATTCCCCTGGTGTTGCAGCTGCTGTTCCTCATTCTCTTCACTGGACTTCTGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033888.5 |
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| CDS TCA 72 bp | TTCTTGGAAGTCTGCTGCAGGAAGCTCTGCTCCTCATaGCTTTTGATGATGACTAGTTGGGCTCCCATTTCT | + |
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Preference number: 6 (lower is better) Translates to: FLEVCCRKLCSS*LLMMTSWAPIS Trigger: AGAAATGGGAGCCCAACTAGTCATCATCAAAAGTCATGAGGAGCAGAGCTTCCTGCAGCAGACTTCCAAGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033888.5 |
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| CDS CAA 90 bp | CAGCCGTTATCTCTGAATTCCACACAGTCTTGTCCCCCAACATTGTaGGGCTGTCCTTTCTTCCAATACTTTTCAAAGCTGTCTGACAGA | + |
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Preference number: 6 (lower is better) Translates to: QPLSLNSTQSCPPTL*GCPFFQYFSKLSDR Trigger: TCTGTCAGACAGCTTTGAAAAGTATTGGAAGAAAGGACAGCCCAACAATGTTGGGGGACAAGACTGTGTGGAATTCAGAGATAACGGCTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033888.5 |
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| CDS CAA 90 bp | TTCCAGCCGTTATCTCTGAATTCCACACAGTCTTGTCCCCCAACATaGTTGGGCTGTCCTTTCTTCCAATACTTTTCAAAGCTGTCTGAC | + |
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Preference number: 6 (lower is better) Translates to: FQPLSLNSTQSCPPT*LGCPFFQYFSKLSD Trigger: GTCAGACAGCTTTGAAAAGTATTGGAAGAAAGGACAGCCCAACAATGTTGGGGGACAAGACTGTGTGGAATTCAGAGATAACGGCTGGAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033888.5 |
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| CDS CAA 90 bp | ACATTTGGCATCATTCCAGCCGTTATCTCTGAATTCCACACAGTCTaGTCCCCCAACATTGTTGGGCTGTCCTTTCTTCCAATACTTTTC | + |
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Preference number: 6 (lower is better) Translates to: TFGIIPAVISEFHTV*SPNIVGLSFLPILF Trigger: GAAAAGTATTGGAAGAAAGGACAGCCCAACAATGTTGGGGGACAAGACTGTGTGGAATTCAGAGATAACGGCTGGAATGATGCCAAATGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033888.5 |
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| CDS TCA 72 bp | TTTCTCTTGCTTTGTGTGTTCCCACTGAATTTCTTCTaGGCTGGGCATCTTGGAAACTTGGATGATGATGGC | + |
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Preference number: 6 (lower is better) Translates to: FLLLCVFPLNFF*AGHLGNLDDDG Trigger: GCCATCATCATCCAAGTTTCCAAGATGCCCAGCTCAGAAGAAATTCAGTGGGAACACACAAAGCAAGAGAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033888.5 |
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| CDS TCA 72 bp | TTTGTTCACATTTGGCATCATTCCAGCCGTTATCTCTaGATTCCACACAGTCTTGTCCCCCAACATTGTTGG | + |
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Preference number: 6 (lower is better) Translates to: FVHIWHHSSRYL*IPHSLVPQHCW Trigger: CCAACAATGTTGGGGGACAAGACTGTGTGGAATTCAGAGATAACGGCTGGAATGATGCCAAATGTGAACAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033888.5 |
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| CDS CAA 72 bp | GCAGAGGCGACAGAGTCTATCAACTTCAGATTTCAGTaGGCTCAGGTCCTTGTACATTTTCTCTTGCTTTGT | + |
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Preference number: 6 (lower is better) Translates to: AEATESINFRFQ*AQVLVHFLLLC Trigger: ACAAAGCAAGAGAAAATGTACAAGGACCTGAGCCAACTGAAATCTGAAGTTGATAGACTCTGTCGCCTCTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033888.5 |
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| CDS CAA 90 bp | CTTCAGATTTCAGTTGGCTCAGGTCCTTGTACATTTTCTCTTGCTTaGTGTGTTCCCACTGAATTTCTTCTGAGCTGGGCATCTTGGAAA | + |
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Preference number: 6 (lower is better) Translates to: LQISVGSGPCTFSLA*CVPTEFLLSWASWK Trigger: TTTCCAAGATGCCCAGCTCAGAAGAAATTCAGTGGGAACACACAAAGCAAGAGAAAATGTACAAGGACCTGAGCCAACTGAAATCTGAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033888.5 |
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| CDS CAA 72 bp | TTATCTCTGAATTCCACACAGTCTTGTCCCCCAACATaGTTGGGCTGTCCTTTCTTCCAATACTTTTCAAAG | + |
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Preference number: 6 (lower is better) Translates to: LSLNSTQSCPPT*LGCPFFQYFSK Trigger: CTTTGAAAAGTATTGGAAGAAAGGACAGCCCAACAATGTTGGGGGACAAGACTGTGTGGAATTCAGAGATAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033888.5 |
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