RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CD209D (Mus musculus)

Ensembl gene IDs: ENSMUSG00000031495

Ensembl transcript IDs: ENSMUST00000011445.8, ENSMUST00000209176.2

Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR CCA 90 bp AAGACAAGGAGAAGGAGCACGAACATGAGGGACATGAGTCAGGTTCATCCACTTTGGGCCCCCAGTTCCTaGCAGGCAGTGGTGGAGTTG +
Preference number: 4 (lower is better)
Translates to: KTRRRSTNMRDMSQVHPLWAPSS*QAVVEL
Trigger: CAACTCCACCACTGCCTGCCAGGAACTGGGGGCCCA...AAGTGGATGAACCTGACTCATGTCCCTCATGTTCGTGCTCCTTCTCCTTGTCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000011445.8
CDS-3UTR GCA 90 bp ATGAGTCAGGTTCATCCACTTGGCATAGTTTGGGATGCAGAGGCTGAGATGAGGAGGAAGGAAAGCAGCTaGAGGACCAAGGGGTTGCGG +
Preference number: 4 (lower is better)
Translates to: MSQVHPLGIVWDAEAEMRRKESS*RTKGLR
Trigger: CCGCAACCCCTTGGTCCTGCAGCTGCTTTCCTTCCT...CCTCATCTCAGCCTCTGCATCCCAAACTATGCCAAGTGGATGAACCTGACTCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000011445.8
CDS-3UTR CCA 90 bp CAAAAGACAAGGAGAAGGAGCACGAACATGAGGGACATGAGTCAGGTTCATCCATCTATGATGACCAGTTaGGCCCCCAGTTCCTGGCAG +
Preference number: 4 (lower is better)
Translates to: QKTRRRSTNMRDMSQVHPSMMTS*APSSWQ
Trigger: CTGCCAGGAACTGGGGGCCCAACTGGTCATCATAGA...TGGATGAACCTGACTCATGTCCCTCATGTTCGTGCTCCTTCTCCTTGTCTTTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000011445.8
CDS-3UTR CCA 90 bp AAGGAGAAGGAGCACGAACATGAGGGACATGAGTCAGGTTCATCCACTTGGCATGAGACCCATCCAGGTTaGTCCTCTAGCCTTAGAAGT +
Preference number: 4 (lower is better)
Translates to: KEKEHEHEGHESGSSTWHETHPG*SSSLRS
Trigger: ACTTCTAAGGCTAGAGGACCAACCTGGATGGGTCTC...ATGCCAAGTGGATGAACCTGACTCATGTCCCTCATGTTCGTGCTCCTTCTCCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011445.8
CDS-3UTR GCA 90 bp GTCCTAAAGTCAAAAGACAAGGAGAAGGAGCACGAACATGAGGGACATGAGTCAGAGCCATCCACCCAGTaGCATGTGGCTTCATTATGC +
Preference number: 4 (lower is better)
Translates to: VLKSKDKEKEHEHEGHESEPSTQ*HVASLC
Trigger: GCATAATGAAGCCACATGGCACTGGGTGGATGGCTC...TGACTCATGTCCCTCATGTTCGTGCTCCTTCTCCTTGTCTTTTGACTTTAGGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000011445.8
CDS-3UTR TCA 90 bp AAGGAGAAGGAGCACGAACATGAGGGACATGAGTCAGGTTCATCCACTTGGCATGTAGTTTATCACAACTaGGATCATTCCAGCCATCCC +
Preference number: 4 (lower is better)
Translates to: KEKEHEHEGHESGSSTWHVVYHN*DHSSHP
Trigger: GGGATGGCTGGAATGATCTCAGTTGTGATAAACTAC...ATGCCAAGTGGATGAACCTGACTCATGTCCCTCATGTTCGTGCTCCTTCTCCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011445.8
CDS-3UTR CCA 90 bp AGTCAAAAGACAAGGAGAAGGAGCACGAACATGAGGGACATGAGTCAGGTTCATCCTGGCAGGCAGTGGTaGAGTTGTGCCAATTTCTTT +
Preference number: 4 (lower is better)
Translates to: SQKTRRRSTNMRDMSQVHPGRQW*SCANFF
Trigger: AAAGAAATTGGCACAACTCCACCACTGCCTGCCAGG...ATGAACCTGACTCATGTCCCTCATGTTCGTGCTCCTTCTCCTTGTCTTTTGACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000011445.8
CDS-3UTR CCA 90 bp AAGTCAAAAGACAAGGAGAAGGAGCACGAACATGAGGGACATGAGTCAGGTTCACCACCCAGTGCCATGTaGCTTCATTATGCATGTCTG +
Preference number: 4 (lower is better)
Translates to: KSKDKEKEHEHEGHESGSPPSAM*LHYACL
Trigger: CAGACATGCATAATGAAGCCACATGGCACTGGGTGG...TGAACCTGACTCATGTCCCTCATGTTCGTGCTCCTTCTCCTTGTCTTTTGACTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000011445.8
CDS-3UTR TCA 90 bp AAGACAAGGAGAAGGAGCACGAACATGAGGGACATGAGTCAGGTTCATCCACTTCACTTGCTGTGTCTTTaGTTCCATGGAGTCACTCAT +
Preference number: 4 (lower is better)
Translates to: KTRRRSTNMRDMSQVHPLHLLCL*FHGVTH
Trigger: ATGAGTGACTCCATGGAATCAAAGACACAGCAAGTG...AAGTGGATGAACCTGACTCATGTCCCTCATGTTCGTGCTCCTTCTCCTTGTCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011445.8
CDS-3UTR GCA 90 bp CTAAAGTCAAAAGACAAGGAGAAGGAGCACGAACATGAGGGACATGAGTCAGGTGCAGTGGTGGAGTTGTaGCAATTTCTTTGGGACTTG +
Preference number: 4 (lower is better)
Translates to: LKSKDKEKEHEHEGHESGAVVEL*QFLWDL
Trigger: CAAGTCCCAAAGAAATTGGCACAACTCCACCACTGC...ACCTGACTCATGTCCCTCATGTTCGTGCTCCTTCTCCTTGTCTTTTGACTTTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000011445.8
CDS-3UTR TCA 90 bp AGTCAAAAGACAAGGAGAAGGAGCACGAACATGAGGGACATGAGTCAGGTTCATTTTGTAATCGGGAGCTaGTATCAGAATACCTGGTGC +
Preference number: 4 (lower is better)
Translates to: SQKTRRRSTNMRDMSQVHFVIGS*YQNTWC
Trigger: GCACCAGGTATTCTGATATCAGCTCCCGATTACAAA...ATGAACCTGACTCATGTCCCTCATGTTCGTGCTCCTTCTCCTTGTCTTTTGACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000011445.8
CDS-3UTR GCA 90 bp AAGTCAAAAGACAAGGAGAAGGAGCACGAACATGAGGGACATGAGTCAGGTTCACATGTGGCTTCATTATaGATGTCTGAGAGACCCATC +
Preference number: 4 (lower is better)
Translates to: KSKDKEKEHEHEGHESGSHVASL*MSERPI
Trigger: GATGGGTCTCTCAGACATGCATAATGAAGCCACATG...TGAACCTGACTCATGTCCCTCATGTTCGTGCTCCTTCTCCTTGTCTTTTGACTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000011445.8
CDS-3UTR CCA 90 bp GTCCTAAAGTCAAAAGACAAGGAGAAGGAGCACGAACATGAGGGACATGAGTCAACACTCTTCATCCTCTaGAATGACCACTTGCTGTGT +
Preference number: 4 (lower is better)
Translates to: VLKSKDKEKEHEHEGHESTLFIL*NDHLLC
Trigger: ACACAGCAAGTGGTCATTCCAGAGGATGAAGAGTGT...TGACTCATGTCCCTCATGTTCGTGCTCCTTCTCCTTGTCTTTTGACTTTAGGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000011445.8
CDS-3UTR CCA 90 bp AAGGAGAAGGAGCACGAACATGAGGGACATGAGTCAGGTTCATCCACTTGGCATAATTTCTTTGGGACTTaGAGAAGAAGTAACAGCTTC +
Preference number: 4 (lower is better)
Translates to: KEKEHEHEGHESGSSTWHNFFGT*RRSNSF
Trigger: GAAGCTGTTACTTCTTCTCCAAGTCCCAAAGAAATT...ATGCCAAGTGGATGAACCTGACTCATGTCCCTCATGTTCGTGCTCCTTCTCCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011445.8
CDS-3UTR GCA 90 bp AGTCAAAAGACAAGGAGAAGGAGCACGAACATGAGGGACATGAGTCAGGTTCATCTGCTTCGTATACTCTaGCAAACTCTTGATTCCAAA +
Preference number: 4 (lower is better)
Translates to: SQKTRRRSTNMRDMSQVHLLRIL*QTLDSK
Trigger: TTTGGAATCAAGAGTTTGGCAGAGTATACGAAGCAG...ATGAACCTGACTCATGTCCCTCATGTTCGTGCTCCTTCTCCTTGTCTTTTGACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000011445.8
CDS CCA 90 bp TGCTCCTCATCAGTCTCTATGATGACCAGTTGGGCCCCCAGTTCCTaGCAGGCAGTGGTGGAGTTGTGCCAATTTCTTTGGGACTTGGAG +
Preference number: 5 (lower is better)
Translates to: CSSSVSMMTSWAPSS*QAVVELCQFLWDLE
Trigger: CTCCAAGTCCCAAAGAAATTGGCACAACTCCACCACTGCCTGCCAGGAACTGGGGGCCCAACTGGTCATCATAGAGACTGATGAGGAGCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000011445.8
ENSMUST00000209176.2
CDS GCA 90 bp ATCCAGGTTGGTCCTCTAGCCTTAGAAGTCTGCTGCAGGAAAGTCTaGTCCTCATCAGTCTCTATGATGACCAGTTGGGCCCCCAGTTCC +
Preference number: 5 (lower is better)
Translates to: IQVGPLALEVCCRKV*SSSVSMMTSWAPSS
Trigger: GGAACTGGGGGCCCAACTGGTCATCATAGAGACTGATGAGGAGCAGACTTTCCTGCAGCAGACTTCTAAGGCTAGAGGACCAACCTGGAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000011445.8
ENSMUST00000209176.2
CDS TCA 90 bp CGCAGGGTTGGCACAAGCCATCATGAACTTCAGCCTTCAGTTGCATaGGCTCCTGGTAGATTTTGTTCTGAACCTCTGAGCTGGGGACCT +
Preference number: 5 (lower is better)
Translates to: RRVGTSHHELQPSVA*APGRFCSEPLSWGP
Trigger: AGGTCCCCAGCTCAGAGGTTCAGAACAAAATCTACCAGGAGCTCATGCAACTGAAGGCTGAAGTTCATGATGGCTTGTGCCAACCCTGCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000011445.8
ENSMUST00000209176.2
CDS-3UTR CAA 90 bp GTCCTAAAGTCAAAAGACAAGGAGAAGGAGCACGAACATGAGGGACATGAGTCAGTCCCTGGCGCAGGGTaGGCACAAGCCATCATGAAC +
Preference number: 5 (lower is better)
Translates to: VLKSKDKEKEHEHEGHESVPGAG*AQAIMN
Trigger: GTTCATGATGGCTTGTGCCAACCCTGCGCCAGGGAC...TGACTCATGTCCCTCATGTTCGTGCTCCTTCTCCTTGTCTTTTGACTTTAGGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000011445.8
CDS GCA 90 bp TCTGAGAGACCCATCCAGGTTGGTCCTCTAGCCTTAGAAGTCTGCTaGAGGAAAGTCTGCTCCTCATCAGTCTCTATGATGACCAGTTGG +
Preference number: 5 (lower is better)
Translates to: SERPIQVGPLALEVC*RKVCSSSVSMMTSW
Trigger: CCAACTGGTCATCATAGAGACTGATGAGGAGCAGACTTTCCTGCAGCAGACTTCTAAGGCTAGAGGACCAACCTGGATGGGTCTCTCAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000011445.8
ENSMUST00000209176.2
CDS-3UTR CAA 90 bp AAGGAGAAGGAGCACGAACATGAGGGACATGAGTCAGGTTCATCCACTTGGCATCAGGCAGTGGTGGAGTaGTGCCAATTTCTTTGGGAC +
Preference number: 5 (lower is better)
Translates to: KEKEHEHEGHESGSSTWHQAVVE*CQFLWD
Trigger: GTCCCAAAGAAATTGGCACAACTCCACCACTGCCTG...ATGCCAAGTGGATGAACCTGACTCATGTCCCTCATGTTCGTGCTCCTTCTCCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011445.8
CDS-3UTR CAA 90 bp AGTCAAAAGACAAGGAGAAGGAGCACGAACATGAGGGACATGAGTCAGGTTCATCTCTATGATGACCAGTaGGGCCCCCAGTTCCTGGCA +
Preference number: 5 (lower is better)
Translates to: SQKTRRRSTNMRDMSQVHLYDDQ*GPQFLA
Trigger: TGCCAGGAACTGGGGGCCCAACTGGTCATCATAGAG...ATGAACCTGACTCATGTCCCTCATGTTCGTGCTCCTTCTCCTTGTCTTTTGACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000011445.8
CDS TCA 90 bp TGTGCCAATTTCTTTGGGACTTGGAGAAGAAGTAACAGCTTCCATTaGAGAATGTCCAGTCCCTGGCGCAGGGTTGGCACAAGCCATCAT +
Preference number: 5 (lower is better)
Translates to: CANFFGTWRRSNSFH*RMSSPWRRVGTSHH
Trigger: ATGATGGCTTGTGCCAACCCTGCGCCAGGGACTGGACATTCTTCAATGGAAGCTGTTACTTCTTCTCCAAGTCCCAAAGAAATTGGCACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000011445.8
ENSMUST00000209176.2
CDS GCA 90 bp AAGAACAGGAAGGAAAGCAGCTGCAGGACCAAGGGGTTGCGGCTCTaGTTCGTATACTCTGCCAAACTCTTGATTCCAAATTTTGTTTGT +
Preference number: 5 (lower is better)
Translates to: KNRKESSCRTKGLRL*FVYSAKLLIPNFVC
Trigger: ACAAACAAAATTTGGAATCAAGAGTTTGGCAGAGTATACGAAGCAGAGCCGCAACCCCTTGGTCCTGCAGCTGCTTTCCTTCCTGTTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000011445.8
CDS-3UTR CAA 90 bp AGTCAAAAGACAAGGAGAAGGAGCACGAACATGAGGGACATGAGTCAGGTTCATCCACTTGCTGTGTCTTaGATTCCATGGAGTCACTCA +
Preference number: 5 (lower is better)
Translates to: SQKTRRRSTNMRDMSQVHPLAVS*IPWSHS
Trigger: TGAGTGACTCCATGGAATCAAAGACACAGCAAGTGG...ATGAACCTGACTCATGTCCCTCATGTTCGTGCTCCTTCTCCTTGTCTTTTGACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000011445.8
CDS-3UTR CAA 90 bp AAGACAAGGAGAAGGAGCACGAACATGAGGGACATGAGTCAGGTTCATCCACTTGTTGTGCCAATTTCTTaGGGACTTGGAGAAGAAGTA +
Preference number: 5 (lower is better)
Translates to: KTRRRSTNMRDMSQVHPLVVPIS*GLGEEV
Trigger: TACTTCTTCTCCAAGTCCCAAAGAAATTGGCACAAC...AAGTGGATGAACCTGACTCATGTCCCTCATGTTCGTGCTCCTTCTCCTTGTCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011445.8
CDS CAA 90 bp CTGCTGCAGGAAAGTCTGCTCCTCATCAGTCTCTATGATGACCAGTaGGGCCCCCAGTTCCTGGCAGGCAGTGGTGGAGTTGTGCCAATT +
Preference number: 6 (lower is better)
Translates to: LLQESLLLISLYDDQ*GPQFLAGSGGVVPI
Trigger: AATTGGCACAACTCCACCACTGCCTGCCAGGAACTGGGGGCCCAACTGGTCATCATAGAGACTGATGAGGAGCAGACTTTCCTGCAGCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000011445.8
ENSMUST00000209176.2
CDS TCA 72 bp CCTCTGAGCTGGGGACCTTTGACACTAGGATCAGAATaGTCAGCAGAAGCCCAGCCAAGAACAGGAAGGAAA +
Preference number: 6 (lower is better)
Translates to: PLSWGPLTLGSE*SAEAQPRTGRK
Trigger: TTTCCTTCCTGTTCTTGGCTGGGCTTCTGCTGATCATTCTGATCCTAGTGTCAAAGGTCCCCAGCTCAGAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000011445.8
CDS TCA 72 bp ATCCACCCAGTGCCATGTGGCTTCATTATGCATGTCTaGGAGACCCATCCAGGTTGGTCCTCTAGCCTTAGA +
Preference number: 6 (lower is better)
Translates to: IHPVPCGFIMHV*ETHPGWSSSLR
Trigger: TCTAAGGCTAGAGGACCAACCTGGATGGGTCTCTCAGACATGCATAATGAAGCCACATGGCACTGGGTGGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000011445.8
ENSMUST00000209176.2
CDS TCA 72 bp TTCTTTGGGACTTGGAGAAGAAGTAACAGCTTCCATTaGAGAATGTCCAGTCCCTGGCGCAGGGTTGGCACA +
Preference number: 6 (lower is better)
Translates to: FFGTWRRSNSFH*RMSSPWRRVGT
Trigger: TGTGCCAACCCTGCGCCAGGGACTGGACATTCTTCAATGGAAGCTGTTACTTCTTCTCCAAGTCCCAAAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000011445.8
ENSMUST00000209176.2
CDS TCA 72 bp TGGTGCCACTCATCAAACACTCTTCATCCTCTGGAATaGCCACTTGCTGTGTCTTTGATTCCATGGAGTCAC +
Preference number: 6 (lower is better)
Translates to: WCHSSNTLHPLE*PLAVSLIPWSH
Trigger: GTGACTCCATGGAATCAAAGACACAGCAAGTGGTCATTCCAGAGGATGAAGAGTGTTTGATGAGTGGCACCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000011445.8
ENSMUST00000209176.2