Pregenerated sensors for CD209C (Mus musculus)
Ensembl gene IDs: ENSMUSG00000040165Ensembl transcript IDs: ENSMUST00000044060.14, ENSMUST00000208622.2
Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR GCA 90 bp | CAATATTTCATGAAACTGAACAGCAGATGTGAGCCATCCACCCAGTaGCATCTGCCTTCATGCTTCAGGTCTGACAGGCCCATCCAGGCA | + |
Preference number: 1 (lower is better) Translates to: QYFMKLNSRCEPSTQ*HLPSCFRSDRPIQA Trigger: TGCCTGGATGGGCCTGTCAGACCTGAAGCATGAAGGCAGATGGCACTGGGTGGATGGCTCACATCTGCTGTTCAGTTTCATGAAATATTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000208622.2 |
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3UTR-3UTR TCA 90 bp | CAGGACATAGCAGACTTCTTGCAGATCCAGTATTTCTTAATTGTACATGGGGCAACTGAACAGCAGATGTaGGCCATCCACCCAGTGCCA | + |
Preference number: 2 (lower is better) Translates to: QDIADFLQIQYFLIVHGATEQQM*AIHPVP Trigger: TGGCACTGGGTGGATGGCTCACATCTGCTGTTCAGT...TGCCCCATGTACAATTAAGAAATACTGGATCTGCAAGAAGTCTGCTATGTCCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000208622.2 |
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3UTR-3UTR GCA 90 bp | GGACATAGCAGACTTCTTGCAGATCCAGTATTTCTTAATTGTACATGGGGCATCGAGCCATCCACCCAGTaGCATCTGCCTTCATGCTTC | + |
Preference number: 2 (lower is better) Translates to: GHSRLLADPVFLNCTWGIEPSTQ*HLPSCF Trigger: GAAGCATGAAGGCAGATGGCACTGGGTGGATGGCTC...GATGCCCCATGTACAATTAAGAAATACTGGATCTGCAAGAAGTCTGCTATGTCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000208622.2 |
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3UTR-3UTR TCA 90 bp | CAGGACATAGCAGACTTCTTGCAGATCCAGTATTTCTTAATTGTACATGGGGCATCCAGCCATCGCCTCTaGATTCAGCACAGTCTTCTT | + |
Preference number: 2 (lower is better) Translates to: QDIADFLQIQYFLIVHGASSHRL*IQHSLL Trigger: AAGAAGACTGTGCTGAATTCAGAGGCGATGGCTGGA...TGCCCCATGTACAATTAAGAAATACTGGATCTGCAAGAAGTCTGCTATGTCCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000208622.2 |
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3UTR-3UTR CCA 90 bp | GGACATAGCAGACTTCTTGCAGATCCAGTATTTCTTAATTGTACATGGGGCATCCTTCCCATTCATTGTTaGGCTCTCCCTTGTTCCAAT | + |
Preference number: 2 (lower is better) Translates to: GHSRLLADPVFLNCTWGILPIHC*ALPCSN Trigger: ATTGGAACAAGGGAGAGCCCAACAATGAATGGGAAG...GATGCCCCATGTACAATTAAGAAATACTGGATCTGCAAGAAGTCTGCTATGTCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000208622.2 |
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3UTR GCA 72 bp | ATGAAACTGAACAGCAGATGTGAGCCATCCACCCAGTaGCATCTGCCTTCATGCTTCAGGTCTGACAGGCCC | + |
Preference number: 3 (lower is better) Translates to: MKLNSRCEPSTQ*HLPSCFRSDRP Trigger: GGGCCTGTCAGACCTGAAGCATGAAGGCAGATGGCACTGGGTGGATGGCTCACATCTGCTGTTCAGTTTCAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000208622.2 |
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CDS-3UTR GCA 90 bp | TGTGAGCCATCCACCCAGTGCCATCTGCCTTCATGCTTCAGGTCTGACAGGCCCTACTTTCTCCTTCTTTaGCTGTTCTTGTCCGTGGGA | + |
Preference number: 4 (lower is better) Translates to: CEPSTQCHLPSCFRSDRPYFLLL*LFLSVG Trigger: TCCCACGGACAAGAACAGGCAAAGAAGGAGAAAGTA...GGGCCTGTCAGACCTGAAGCATGAAGGCAGATGGCACTGGGTGGATGGCTCACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000208622.2 |
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3UTR CAA 72 bp | CCTCTGAATTCAGCACAGTCTTCTTCCCATTCATTGTaGGGCTCTCCCTTGTTCCAATATTTCATGAAACTG | + |
Preference number: 4 (lower is better) Translates to: PLNSAQSSSHSL*GSPLFQYFMKL Trigger: CAGTTTCATGAAATATTGGAACAAGGGAGAGCCCAACAATGAATGGGAAGAAGACTGTGCTGAATTCAGAGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000208622.2 |
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CDS-3UTR CAA 90 bp | TGTGAGCCATCCACCCAGTGCCATCTGCCTTCATGCTTCAGGTCTGACAGGCCCTGCAGGAAGCTTTATTaGAGACTTCAGCTGGGTCAT | + |
Preference number: 5 (lower is better) Translates to: CEPSTQCHLPSCFRSDRPCRKLY*RLQLGH Trigger: ATGACCCAGCTGAAGTCTCAAATAAAGCTTCCTGCA...GGGCCTGTCAGACCTGAAGCATGAAGGCAGATGGCACTGGGTGGATGGCTCACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000208622.2 |
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CDS GCA 90 bp | TTGAGACTTCAGCTGGGTCATCTCCTTGTATACTTTCTCCTTCTTTaGCTGTTCTTGTCCGTGGGAGTAGGCAACATTAGAGACTCTTTT | + |
Preference number: 5 (lower is better) Translates to: LRLQLGHLLVYFLLL*LFLSVGVGNIRDSF Trigger: AAAAGAGTCTCTAATGTTGCCTACTCCCACGGACAAGAACAGGCAAAGAAGGAGAAAGTATACAAGGAGATGACCCAGCTGAAGTCTCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044060.14 ENSMUST00000208622.2 |
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CDS-3UTR CAA 90 bp | GTGCAGGACATAGCAGACTTCTTGCAGATCCAGTATTTCTTAATTGTACATGGGATACTTTCTCCTTCTTaGCCTGTTCTTGTCCGTGGG | + |
Preference number: 5 (lower is better) Translates to: VQDIADFLQIQYFLIVHGILSPS*PVLVRG Trigger: CCCACGGACAAGAACAGGCAAAGAAGGAGAAAGTAT...CCCATGTACAATTAAGAAATACTGGATCTGCAAGAAGTCTGCTATGTCCTGCAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000208622.2 |
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CDS-3UTR CAA 90 bp | CAGGACATAGCAGACTTCTTGCAGATCCAGTATTTCTTAATTGTACATGGGGCAAGCTGGGTCATCTCCTaGTATACTTTCTCCTTCTTT | + |
Preference number: 5 (lower is better) Translates to: QDIADFLQIQYFLIVHGASWVIS*YTFSFF Trigger: AAAGAAGGAGAAAGTATACAAGGAGATGACCCAGCT...TGCCCCATGTACAATTAAGAAATACTGGATCTGCAAGAAGTCTGCTATGTCCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000208622.2 |
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CDS TCA 72 bp | CAGTCCCAGGGGCAAGGGCGGCACAGGCGGTTTATTTaGGACTTCAGCTGGGTCATCTCCTTGTATACTTTC | + |
Preference number: 6 (lower is better) Translates to: QSQGQGRHRRFI*DFSWVISLYTF Trigger: GAAAGTATACAAGGAGATGACCCAGCTGAAGTCTCAAATAAACCGCCTGTGCCGCCCTTGCCCCTGGGACTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044060.14 |
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CDS CAA 72 bp | CCAGTCCCAGGGGCAAGGGCGGCACAGGCGGTTTATTaGAGACTTCAGCTGGGTCATCTCCTTGTATACTTT | + |
Preference number: 6 (lower is better) Translates to: PVPGARAAQAVY*RLQLGHLLVYF Trigger: AAAGTATACAAGGAGATGACCCAGCTGAAGTCTCAAATAAACCGCCTGTGCCGCCCTTGCCCCTGGGACTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044060.14 |
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CDS GCA 72 bp | CAGCTGGGTCATCTCCTTGTATACTTTCTCCTTCTTTaGCTGTTCTTGTCCGTGGGAGTAGGCAACATTAGA | + |
Preference number: 6 (lower is better) Translates to: QLGHLLVYFLLL*LFLSVGVGNIR Trigger: TCTAATGTTGCCTACTCCCACGGACAAGAACAGGCAAAGAAGGAGAAAGTATACAAGGAGATGACCCAGCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044060.14 ENSMUST00000208622.2 |
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CDS CAA 72 bp | GAAGTCTGCTGCAGGAAGCTCTGTTCATCATCACTTTaGATAACCACTAGTTGGGCATCCAATTTTCTGCAG | + |
Preference number: 6 (lower is better) Translates to: EVCCRKLCSSSL*ITTSWASNFLQ Trigger: CTGCAGAAAATTGGATGCCCAACTAGTGGTTATCAAAAGTGATGATGAACAGAGCTTCCTGCAGCAGACTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044060.14 |
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CDS CCA 72 bp | AAGCTCTGTTCATCATCACTTTTGATAACCACTAGTTaGGCATCCAATTTTCTGCAGGCATTGACAGAGTCA | + |
Preference number: 6 (lower is better) Translates to: KLCSSSLLITTS*ASNFLQALTES Trigger: TGACTCTGTCAATGCCTGCAGAAAATTGGATGCCCAACTAGTGGTTATCAAAAGTGATGATGAACAGAGCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044060.14 |