RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CD209B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000065987

Ensembl transcript IDs: ENSMUST00000084086.9, ENSMUST00000111014.8, ENSMUST00000171635.8, ENSMUST00000188386.2

Found 174 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ACGATCCTGAGGCCAACAGGCAGGAAGAAGGAGCTGGCACGAAAGTaGGGCACATCCATGTGCCTGGCAGAATGGCATGAAGGTAGGAGC +
Preference number: 1 (lower is better)
Translates to: TILRPTGRKKELARK*GTSMCLAEWHEGRS
Trigger: GCTCCTACCTTCATGCCATTCTGCCAGGCACATGGATGTGCCTCACTTTCGTGCCAGCTCCTTCTTCCTGCCTGTTGGCCTCAGGATCGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
3UTR CCA 90 bp GAATGGCATGAAGGTAGGAGCGGAGATGAGCTAGCCTTCAGTGCATaGGGTTGCAGACTTCTTGCAGATCCAGAACTTTTTGAGTTCACA +
Preference number: 1 (lower is better)
Translates to: EWHEGRSGDELAFSA*GCRLLADPELFEFT
Trigger: TGTGAACTCAAAAAGTTCTGGATCTGCAAGAAGTCTGCAACCCCATGCACTGAAGGCTAGCTCATCTCCGCTCCTACCTTCATGCCATTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111014.8
3UTR TCA 90 bp GATGTTGTTAGGCTCCCCTCTATTCCAATATTTCTGGAATCTGGATaGCAGAGTAGAACCATCTACCCAGAGCCACGTGGCCTCCTTCTT +
Preference number: 1 (lower is better)
Translates to: DVVRLPSIPIFLESG*QSRTIYPEPRGLLL
Trigger: AAGAAGGAGGCCACGTGGCTCTGGGTAGATGGTTCTACTCTGTCATCCAGATTCCAGAAATATTGGAATAGAGGGGAGCCTAACAACATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111014.8
3UTR CCA 90 bp TCTTCCTCACCGATGTTGTTAGGCTCCCCTCTATTCCAATATTTCTaGAATCTGGATGACAGAGTAGAACCATCTACCCAGAGCCACGTG +
Preference number: 1 (lower is better)
Translates to: SSSPMLLGSPLFQYF*NLDDRVEPSTQSHV
Trigger: CACGTGGCTCTGGGTAGATGGTTCTACTCTGTCATCCAGATTCCAGAAATATTGGAATAGAGGGGAGCCTAACAACATCGGTGAGGAAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111014.8
3UTR CCA 90 bp CTTTATTACAGCAACAGTAAACTAGACTACCTGACAATAGACAAATaGCTGGGGAGATGCTTAGTGGATAAGAGTGCTGATGTGCAAGAA +
Preference number: 1 (lower is better)
Translates to: LYYSNSKLDYLTIDK*LGRCLVDKSADVQE
Trigger: TTCTTGCACATCAGCACTCTTATCCACTAAGCATCTCCCCAGCCATTTGTCTATTGTCAGGTAGTCTAGTTTACTGTTGCTGTAATAAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
3UTR-3UTR CCA 90 bp AACAGGCAGGAAGAAGGAGCTGGCACGAAAGTGAGGCACATCCATGTGCCTGGCCTACCCAGAGCCACGTaGCCTCCTTCTTCAGGTCTG +
Preference number: 2 (lower is better)
Translates to: NRQEEGAGTKVRHIHVPGLPRAT*PPSSGL
Trigger: CAGACCTGAAGAAGGAGGCCACGTGGCTCTGGGTAG...GCCAGGCACATGGATGTGCCTCACTTTCGTGCCAGCTCCTTCTTCCTGCCTGTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111014.8
3UTR-3UTR CCA 90 bp AGAGCCTTTTTCACGATCCTGAGGCCAACAGGCAGGAAGAAGGAGCTGGCACGAGCACATCCATGTGCCTaGCAGAATGGCATGAAGGTA +
Preference number: 2 (lower is better)
Translates to: RAFFTILRPTGRKKELARAHPCA*QNGMKV
Trigger: TACCTTCATGCCATTCTGCCAGGCACATGGATGTGC...TCGTGCCAGCTCCTTCTTCCTGCCTGTTGGCCTCAGGATCGTGAAAAAGGCTCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
3UTR-3UTR TCA 90 bp TTAGTGGATAAGAGTGCTGATGTGCAAGAAAGAGGGCCTGACCTTGAAGCCCTAGAGCTGGCACGAAAGTaGGGCACATCCATGTGCCTG +
Preference number: 2 (lower is better)
Translates to: LVDKSADVQERGPDLEALELARK*GTSMCL
Trigger: CAGGCACATGGATGTGCCTCACTTTCGTGCCAGCTC...TAGGGCTTCAAGGTCAGGCCCTCTTTCTTGCACATCAGCACTCTTATCCACTAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
3UTR-3UTR TCA 90 bp GTGCAAGAAAGAGGGCCTGACCTTGAAGCCCTAGTAATTGTTAGAGGCCAGACACCTTTTTCACGATCCTaGGGCCAACAGGCAGGAAGA +
Preference number: 2 (lower is better)
Translates to: VQERGPDLEALVIVRGQTPFSRS*GQQAGR
Trigger: TCTTCCTGCCTGTTGGCCTCAGGATCGTGAAAAAGG...TGTCTGGCCTCTAACAATTACTAGGGCTTCAAGGTCAGGCCCTCTTTCTTGCAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
3UTR-3UTR TCA 90 bp CTAGACTACCTGACAATAGACAAATGGCTGGGGAGATGCTTAGTGGATAAGAGTCATTGGGTTGGCCAGTaGGCATGTCTGTGGGGGCTT +
Preference number: 2 (lower is better)
Translates to: LDYLTIDKWLGRCLVDKSHWVGQ*ACLWGL
Trigger: AAGCCCCCACAGACATGCTCACTGGCCAACCCAATG...ACTCTTATCCACTAAGCATCTCCCCAGCCATTTGTCTATTGTCAGGTAGTCTAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
3UTR-3UTR TCA 90 bp ATAGACAAATGGCTGGGGAGATGCTTAGTGGATAAGAGTGCTGATGTGCAAGAACTCCTTCTTCAGGTCTaGCAGGCCCATCCAGGTTGG +
Preference number: 2 (lower is better)
Translates to: IDKWLGRCLVDKSADVQELLLQV*QAHPGW
Trigger: CCAACCTGGATGGGCCTGTCAGACCTGAAGAAGGAG...TTCTTGCACATCAGCACTCTTATCCACTAAGCATCTCCCCAGCCATTTGTCTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111014.8
3UTR-3UTR GCA 90 bp GTGCAAGAAAGAGGGCCTGACCTTGAAGCCCTAGTAATTGTTAGAGGCCAGACACAATGGTGTATTGCCTaGATTGGGTTGGCCAGTGAG +
Preference number: 2 (lower is better)
Translates to: VQERGPDLEALVIVRGQTQWCIA*IGLASE
Trigger: CTCACTGGCCAACCCAATGCAGGCAATACACCATTG...TGTCTGGCCTCTAACAATTACTAGGGCTTCAAGGTCAGGCCCTCTTTCTTGCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
3UTR CAA 90 bp TTCCAGCCATCCCCAGCAAATTCGACACAGTCTTCCTCACCGATGTaGTTAGGCTCCCCTCTATTCCAATATTTCTGGAATCTGGATGAC +
Preference number: 2 (lower is better)
Translates to: FQPSPANSTQSSSPM*LGSPLFQYFWNLDD
Trigger: GTCATCCAGATTCCAGAAATATTGGAATAGAGGGGAGCCTAACAACATCGGTGAGGAAGACTGTGTCGAATTTGCTGGGGATGGCTGGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111014.8
3UTR-3UTR TCA 90 bp CTAGACTACCTGACAATAGACAAATGGCTGGGGAGATGCTTAGTGGATAAGAGTCCTTTTTCACGATCCTaGGGCCAACAGGCAGGAAGA +
Preference number: 2 (lower is better)
Translates to: LDYLTIDKWLGRCLVDKSPFSRS*GQQAGR
Trigger: TCTTCCTGCCTGTTGGCCTCAGGATCGTGAAAAAGG...ACTCTTATCCACTAAGCATCTCCCCAGCCATTTGTCTATTGTCAGGTAGTCTAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
3UTR-3UTR TCA 90 bp TTAGTGGATAAGAGTGCTGATGTGCAAGAAAGAGGGCCTGACCTTGAAGCCCTATCTTCTTCTGACCTTTaGGTGTATGTGTCTCAGCAA +
Preference number: 2 (lower is better)
Translates to: LVDKSADVQERGPDLEALSSSDL*VYVSQQ
Trigger: TTGCTGAGACACATACACTCAAAGGTCAGAAGAAGA...TAGGGCTTCAAGGTCAGGCCCTCTTTCTTGCACATCAGCACTCTTATCCACTAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
3UTR-3UTR GCA 90 bp CCAGAGAAACCTGAAAGCAAAAGGACAATAGTGAGTCCCTTTGTGATAGTCAGCATTGTCTTAAGTTCCTaGCATCCTGACCTCCCTGCT +
Preference number: 2 (lower is better)
Translates to: PEKPESKRTIVSPFVIVSIVLSS*HPDLPA
Trigger: AGCAGGGAGGTCAGGATGGCAGGAACTTAAGACAAT...GCTGACTATCACAAAGGGACTCACTATTGTCCTTTTGCTTTCAGGTTTCTCTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
3UTR-3UTR CCA 90 bp CAACTCCTGTCTCAAGGGAGTAAAGAGCTATCAAAGAGAACACCAATGTCTTCTGCACATCCATGTGCCTaGCAGAATGGCATGAAGGTA +
Preference number: 2 (lower is better)
Translates to: QLLSQGSKELSKRTPMSSAHPCA*QNGMKV
Trigger: TACCTTCATGCCATTCTGCCAGGCACATGGATGTGC...AGAAGACATTGGTGTTCTCTTTGATAGCTCTTTACTCCCTTGAGACAGGAGTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
3UTR-3UTR CCA 90 bp GTGCAAGAAAGAGGGCCTGACCTTGAAGCCCTAGTAATTGTTAGAGGCCAGACACATTTAGGAGGTGAGTaGAGACAGAAAAATGTTGGA +
Preference number: 2 (lower is better)
Translates to: VQERGPDLEALVIVRGQTHLGGE*RQKNVG
Trigger: TCCAACATTTTTCTGTCTCCACTCACCTCCTAAATG...TGTCTGGCCTCTAACAATTACTAGGGCTTCAAGGTCAGGCCCTCTTTCTTGCAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
3UTR-3UTR TCA 90 bp AATGGAAAACACCCAGATTCTGAAAGCATCCTACATCAGGTAACTGCACTGAAGTCTCCTCCTGGCTGTTaGTGTGATGTGACCAATTGT +
Preference number: 2 (lower is better)
Translates to: NGKHPDSESILHQVTALKSPPGC*CDVTNC
Trigger: ACAATTGGTCACATCACATCAACAGCCAGGAGGAGA...CTTCAGTGCAGTTACCTGATGTAGGATGCTTTCAGAATCTGGGTGTTTTCCATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
3UTR-3UTR GCA 90 bp TACAGCAACAGTAAACTAGACTACCTGACAATAGACAAATGGCTGGGGAGATGCATGTGTGCGTTAGCTTaGACATACTTCTGTCTCCTC +
Preference number: 2 (lower is better)
Translates to: YSNSKLDYLTIDKWLGRCMCALA*TYFCLL
Trigger: GAGGAGACAGAAGTATGTGCAAGCTAACGCACACAT...GCATCTCCCCAGCCATTTGTCTATTGTCAGGTAGTCTAGTTTACTGTTGCTGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
3UTR-3UTR CCA 90 bp TTAGTGGATAAGAGTGCTGATGTGCAAGAAAGAGGGCCTGACCTTGAAGCCCTACATTTAGGAGGTGAGTaGAGACAGAAAAATGTTGGA +
Preference number: 2 (lower is better)
Translates to: LVDKSADVQERGPDLEALHLGGE*RQKNVG
Trigger: TCCAACATTTTTCTGTCTCCACTCACCTCCTAAATG...TAGGGCTTCAAGGTCAGGCCCTCTTTCTTGCACATCAGCACTCTTATCCACTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
3UTR-3UTR TCA 90 bp CCAGAGAAACCTGAAAGCAAAAGGACAATAGTGAGTCCCTTTGTGATAGTCAGCAAGCCCAGAGAAACCTaGAAGCAAAAGGACAATAGT +
Preference number: 2 (lower is better)
Translates to: PEKPESKRTIVSPFVIVSKPRET*KQKDNS
Trigger: ACTATTGTCCTTTTGCTTTCAGGTTTCTCTGGGCTT...GCTGACTATCACAAAGGGACTCACTATTGTCCTTTTGCTTTCAGGTTTCTCTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
3UTR-3UTR TCA 90 bp ATAGACAAATGGCTGGGGAGATGCTTAGTGGATAAGAGTGCTGATGTGCAAGAATCTTCTTCTGACCTTTaGGTGTATGTGTCTCAGCAA +
Preference number: 2 (lower is better)
Translates to: IDKWLGRCLVDKSADVQESSSDL*VYVSQQ
Trigger: TTGCTGAGACACATACACTCAAAGGTCAGAAGAAGA...TTCTTGCACATCAGCACTCTTATCCACTAAGCATCTCCCCAGCCATTTGTCTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
3UTR-3UTR TCA 90 bp ATAGACAAATGGCTGGGGAGATGCTTAGTGGATAAGAGTGCTGATGTGCAAGAAACCAATGTCTTCTTCTaGCCTTTGAGTGTATGTGTC +
Preference number: 2 (lower is better)
Translates to: IDKWLGRCLVDKSADVQETNVFF*PLSVCV
Trigger: GACACATACACTCAAAGGTCAGAAGAAGACATTGGT...TTCTTGCACATCAGCACTCTTATCCACTAAGCATCTCCCCAGCCATTTGTCTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
3UTR-3UTR CCA 90 bp TACAGCAACAGTAAACTAGACTACCTGACAATAGACAAATGGCTGGGGAGATGCTCTCAGCAAGGAAGATaGAGTAGGTTAATGGAAAAC +
Preference number: 2 (lower is better)
Translates to: YSNSKLDYLTIDKWLGRCSQQGR*SRLMEN
Trigger: GTTTTCCATTAACCTACTCCATCTTCCTTGCTGAGA...GCATCTCCCCAGCCATTTGTCTATTGTCAGGTAGTCTAGTTTACTGTTGCTGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
3UTR-3UTR CCA 90 bp TTAGTGGATAAGAGTGCTGATGTGCAAGAAAGAGGGCCTGACCTTGAAGCCCTACTATTCCAATATTTCTaGAATCTGGATGACAGAGTA +
Preference number: 2 (lower is better)
Translates to: LVDKSADVQERGPDLEALLFQYF*NLDDRV
Trigger: TACTCTGTCATCCAGATTCCAGAAATATTGGAATAG...TAGGGCTTCAAGGTCAGGCCCTCTTTCTTGCACATCAGCACTCTTATCCACTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111014.8
3UTR CCA 72 bp AGGAGCTGGCACGAAAGTGAGGCACATCCATGTGCCTaGCAGAATGGCATGAAGGTAGGAGCGGAGATGAGC +
Preference number: 3 (lower is better)
Translates to: RSWHESEAHPCA*QNGMKVGAEMS
Trigger: GCTCATCTCCGCTCCTACCTTCATGCCATTCTGCCAGGCACATGGATGTGCCTCACTTTCGTGCCAGCTCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111014.8
3UTR TCA 72 bp AGGCCAACAGGCAGGAAGAAGGAGCTGGCACGAAAGTaGGGCACATCCATGTGCCTGGCAGAATGGCATGAA +
Preference number: 3 (lower is better)
Translates to: RPTGRKKELARK*GTSMCLAEWHE
Trigger: TTCATGCCATTCTGCCAGGCACATGGATGTGCCTCACTTTCGTGCCAGCTCCTTCTTCCTGCCTGTTGGCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
3UTR CCA 72 bp GAAGGTAGGAGCGGAGATGAGCTAGCCTTCAGTGCATaGGGTTGCAGACTTCTTGCAGATCCAGAACTTTTT +
Preference number: 3 (lower is better)
Translates to: EGRSGDELAFSA*GCRLLADPELF
Trigger: AAAAAGTTCTGGATCTGCAAGAAGTCTGCAACCCCATGCACTGAAGGCTAGCTCATCTCCGCTCCTACCTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111014.8
3UTR TCA 72 bp ATAAAAAGAAGAATCCCAGAGCCTTTTTCACGATCCTaGGGCCAACAGGCAGGAAGAAGGAGCTGGCACGAA +
Preference number: 3 (lower is better)
Translates to: IKRRIPEPFSRS*GQQAGRRSWHE
Trigger: TTCGTGCCAGCTCCTTCTTCCTGCCTGTTGGCCTCAGGATCGTGAAAAAGGCTCTGGGATTCTTCTTTTTAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
3UTR-3UTR CAA 90 bp CTAGACTACCTGACAATAGACAAATGGCTGGGGAGATGCTTAGTGGATAAGAGTCTTCAGTGCATGGGGTaGCAGACTTCTTGCAGATCC +
Preference number: 3 (lower is better)
Translates to: LDYLTIDKWLGRCLVDKSLQCMG*QTSCRS
Trigger: GGATCTGCAAGAAGTCTGCAACCCCATGCACTGAAG...ACTCTTATCCACTAAGCATCTCCCCAGCCATTTGTCTATTGTCAGGTAGTCTAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111014.8
3UTR-3UTR CAA 90 bp TTAGTGGATAAGAGTGCTGATGTGCAAGAAAGAGGGCCTGACCTTGAAGCCCTAGGAGACAGAAAAATGTaGGATCTTTCAGATCACCAG +
Preference number: 3 (lower is better)
Translates to: LVDKSADVQERGPDLEALGDRKM*DLSDHQ
Trigger: CTGGTGATCTGAAAGATCCAACATTTTTCTGTCTCC...TAGGGCTTCAAGGTCAGGCCCTCTTTCTTGCACATCAGCACTCTTATCCACTAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
3UTR CCA 72 bp CCGATGTTGTTAGGCTCCCCTCTATTCCAATATTTCTaGAATCTGGATGACAGAGTAGAACCATCTACCCAG +
Preference number: 3 (lower is better)
Translates to: PMLLGSPLFQYF*NLDDRVEPSTQ
Trigger: CTGGGTAGATGGTTCTACTCTGTCATCCAGATTCCAGAAATATTGGAATAGAGGGGAGCCTAACAACATCGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111014.8
3UTR TCA 72 bp TGTGATGTGACCAATTGTCTTAAGTTCCTGCCATCCTaGCCTCCCTGCTCTCATCTGGAATGTAAGGTAAAA +
Preference number: 3 (lower is better)
Translates to: CDVTNCLKFLPS*PPCSHLECKVK
Trigger: TTTTACCTTACATTCCAGATGAGAGCAGGGAGGTCAGGATGGCAGGAACTTAAGACAATTGGTCACATCACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
3UTR GCA 72 bp CTAGACTACCTGACAATAGACAAATGGCTGGGGAGATaGTTAGTGGATAAGAGTGCTGATGTGCAAGAAAGA +
Preference number: 3 (lower is better)
Translates to: LDYLTIDKWLGR*LVDKSADVQER
Trigger: TCTTTCTTGCACATCAGCACTCTTATCCACTAAGCATCTCCCCAGCCATTTGTCTATTGTCAGGTAGTCTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
3UTR-3UTR CAA 90 bp ATAGACAAATGGCTGGGGAGATGCTTAGTGGATAAGAGTGCTGATGTGCAAGAAGGAGACAGAAAAATGTaGGATCTTTCAGATCACCAG +
Preference number: 3 (lower is better)
Translates to: IDKWLGRCLVDKSADVQEGDRKM*DLSDHQ
Trigger: CTGGTGATCTGAAAGATCCAACATTTTTCTGTCTCC...TTCTTGCACATCAGCACTCTTATCCACTAAGCATCTCCCCAGCCATTTGTCTAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
3UTR TCA 72 bp CTATCAAAGAGAACACCAATGTCTTCTTCTGACCTTTaGGTGTATGTGTCTCAGCAAGGAAGATGGAGTAGG +
Preference number: 3 (lower is better)
Translates to: LSKRTPMSSSDL*VYVSQQGRWSR
Trigger: CCTACTCCATCTTCCTTGCTGAGACACATACACTCAAAGGTCAGAAGAAGACATTGGTGTTCTCTTTGATAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
3UTR CCA 72 bp AGCAACAGTAAACTAGACTACCTGACAATAGACAAATaGCTGGGGAGATGCTTAGTGGATAAGAGTGCTGAT +
Preference number: 3 (lower is better)
Translates to: SNSKLDYLTIDK*LGRCLVDKSAD
Trigger: ATCAGCACTCTTATCCACTAAGCATCTCCCCAGCCATTTGTCTATTGTCAGGTAGTCTAGTTTACTGTTGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
CDS-3UTR GCA 90 bp AACAGGCAGGAAGAAGGAGCTGGCACGAAAGTGAGGCACATCCATGTGCCTGGCAGGAAGGAGAGCAGCTaGAGGACCAAGGGGACTTGG +
Preference number: 4 (lower is better)
Translates to: NRQEEGAGTKVRHIHVPGRKESS*RTKGTW
Trigger: CCAAGTCCCCTTGGTCCTGCAGCTGCTCTCCTTCCT...GCCAGGCACATGGATGTGCCTCACTTTCGTGCCAGCTCCTTCTTCCTGCCTGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
CDS-3UTR TCA 90 bp AGTGAGGCACATCCATGTGCCTGGCAGAATGGCATGAAGGTAGGAGCGGAGATGCTCCTTCTTCAGGTCTaGCAGGCCCATCCAGGTTGG +
Preference number: 4 (lower is better)
Translates to: SEAHPCAWQNGMKVGAEMLLLQV*QAHPGW
Trigger: CCAACCTGGATGGGCCTGTCAGACCTGAAGAAGGAG...CATCTCCGCTCCTACCTTCATGCCATTCTGCCAGGCACATGGATGTGCCTCACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000171635.8
CDS-3UTR CCA 90 bp AGTGAGGCACATCCATGTGCCTGGCAGAATGGCATGAAGGTAGGAGCGGAGATGCTACCCAGAGCCACGTaGCCTCCTTCTTCAGGTCTG +
Preference number: 4 (lower is better)
Translates to: SEAHPCAWQNGMKVGAEMLPRAT*PPSSGL
Trigger: CAGACCTGAAGAAGGAGGCCACGTGGCTCTGGGTAG...CATCTCCGCTCCTACCTTCATGCCATTCTGCCAGGCACATGGATGTGCCTCACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000171635.8
CDS-3UTR CCA 90 bp AACAGGCAGGAAGAAGGAGCTGGCACGAAAGTGAGGCACATCCATGTGCCTGGCGACTCATTCTTCCCTTaGGAGATGGGGATCCTGGAC +
Preference number: 4 (lower is better)
Translates to: NRQEEGAGTKVRHIHVPGDSFFP*EMGILD
Trigger: GTCCAGGATCCCCATCTCCCAAGGGAAGAATGAGTC...GCCAGGCACATGGATGTGCCTCACTTTCGTGCCAGCTCCTTCTTCCTGCCTGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
CDS-3UTR TCA 90 bp AACAGGCAGGAAGAAGGAGCTGGCACGAAAGTGAGGCACATCCATGTGCCTGGCAGACTTGGAAAAGAATaGTCAGCAGGAGCCCAGCCA +
Preference number: 4 (lower is better)
Translates to: NRQEEGAGTKVRHIHVPGRLGKE*SAGAQP
Trigger: TGGCTGGGCTCCTGCTGATCATTCTTTTCCAAGTCT...GCCAGGCACATGGATGTGCCTCACTTTCGTGCCAGCTCCTTCTTCCTGCCTGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
CDS-3UTR GCA 90 bp GCCAACAGGCAGGAAGAAGGAGCTGGCACGAAAGTGAGGCACATCCATGTGCCTATGGAGCTAAGAGGCTaGATCTTGGCTTCTGTGGAG +
Preference number: 4 (lower is better)
Translates to: ANRQEEGAGTKVRHIHVPMELRG*ILASVE
Trigger: CTCCACAGAAGCCAAGATGCAGCCTCTTAGCTCCAT...AGGCACATGGATGTGCCTCACTTTCGTGCCAGCTCCTTCTTCCTGCCTGTTGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
CDS-3UTR GCA 90 bp GCCAACAGGCAGGAAGAAGGAGCTGGCACGAAAGTGAGGCACATCCATGTGCCTGTGTCCCGAGCATCCTaGCAAACACTTGATTCCAGA +
Preference number: 4 (lower is better)
Translates to: ANRQEEGAGTKVRHIHVPVSRAS*QTLDSR
Trigger: TCTGGAATCAAGTGTTTGGCAGGATGCTCGGGACAC...AGGCACATGGATGTGCCTCACTTTCGTGCCAGCTCCTTCTTCCTGCCTGTTGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
CDS-3UTR CCA 90 bp CAGAGCCTTTTTCACGATCCTGAGGCCAACAGGCAGGAAGAAGGAGCTGGCACGAGCTGGGTCAGTTCCTaGAGGATCTTCTCTTGTTCC +
Preference number: 4 (lower is better)
Translates to: QSLFHDPEANRQEEGAGTSWVSS*RIFSCS
Trigger: GGAACAAGAGAAGATCCTCCAGGAACTGACCCAGCT...CGTGCCAGCTCCTTCTTCCTGCCTGTTGGCCTCAGGATCGTGAAAAAGGCTCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
CDS-3UTR CCA 90 bp AGTGAGGCACATCCATGTGCCTGGCAGAATGGCATGAAGGTAGGAGCGGAGATGGACTCATTCTTCCCTTaGGAGATGGGGATCCTGGAC +
Preference number: 4 (lower is better)
Translates to: SEAHPCAWQNGMKVGAEMDSFFP*EMGILD
Trigger: GTCCAGGATCCCCATCTCCCAAGGGAAGAATGAGTC...CATCTCCGCTCCTACCTTCATGCCATTCTGCCAGGCACATGGATGTGCCTCACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
ENSMUST00000171635.8
CDS-3UTR CCA 90 bp AGTGAGGCACATCCATGTGCCTGGCAGAATGGCATGAAGGTAGGAGCGGAGATGGACTCATTCTGCCCCTaGAAGATGGGAATCCTGGAC +
Preference number: 4 (lower is better)
Translates to: SEAHPCAWQNGMKVGAEMDSFCP*KMGILD
Trigger: GTCCAGGATTCCCATCTTCCAGGGGCAGAATGAGTC...CATCTCCGCTCCTACCTTCATGCCATTCTGCCAGGCACATGGATGTGCCTCACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
ENSMUST00000171635.8
CDS-3UTR CCA 90 bp AACAGGCAGGAAGAAGGAGCTGGCACGAAAGTGAGGCACATCCATGTGCCTGGCCAGGCCCATCCAGGTTaGTCCTTTAGCCTTAGAAGT +
Preference number: 4 (lower is better)
Translates to: NRQEEGAGTKVRHIHVPGQAHPG*SFSLRS
Trigger: ACTTCTAAGGCTAAAGGACCAACCTGGATGGGCCTG...GCCAGGCACATGGATGTGCCTCACTTTCGTGCCAGCTCCTTCTTCCTGCCTGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084086.9
CDS-3UTR GCA 90 bp AGTGAGGCACATCCATGTGCCTGGCAGAATGGCATGAAGGTAGGAGCGGAGATGATGGAGCTAAGAGGCTaGATCTTGGCTTCTGTGGAG +
Preference number: 4 (lower is better)
Translates to: SEAHPCAWQNGMKVGAEMMELRG*ILASVE
Trigger: CTCCACAGAAGCCAAGATGCAGCCTCTTAGCTCCAT...CATCTCCGCTCCTACCTTCATGCCATTCTGCCAGGCACATGGATGTGCCTCACT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
ENSMUST00000171635.8
CDS-3UTR GCA 90 bp AGTGAGGCACATCCATGTGCCTGGCAGAATGGCATGAAGGTAGGAGCGGAGATGGCCTTAGAAGTCTGCTaGAGGAAGGTCTGCTCTTCA +
Preference number: 4 (lower is better)
Translates to: SEAHPCAWQNGMKVGAEMALEVC*RKVCSS
Trigger: TGAAGAGCAGACCTTCCTGCAGCAGACTTCTAAGGC...CATCTCCGCTCCTACCTTCATGCCATTCTGCCAGGCACATGGATGTGCCTCACT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000171635.8
CDS-3UTR CCA 90 bp CAGAGCCTTTTTCACGATCCTGAGGCCAACAGGCAGGAAGAAGGAGCTGGCACGCTGCCTCTCGGTATTTaGGGTTTTGGAGACTTGGAA +
Preference number: 4 (lower is better)
Translates to: QSLFHDPEANRQEEGAGTLPLGI*GFGDLE
Trigger: TTCCAAGTCTCCAAAACCCCAAATACCGAGAGGCAG...CGTGCCAGCTCCTTCTTCCTGCCTGTTGGCCTCAGGATCGTGAAAAAGGCTCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
CDS-3UTR CCA 90 bp AGTGAGGCACATCCATGTGCCTGGCAGAATGGCATGAAGGTAGGAGCGGAGATGTCTGCCCCTGGAAGATaGGAATCCTGGACAAGAGTT +
Preference number: 4 (lower is better)
Translates to: SEAHPCAWQNGMKVGAEMSAPGR*ESWTRV
Trigger: AACTCTTGTCCAGGATTCCCATCTTCCAGGGGCAGA...CATCTCCGCTCCTACCTTCATGCCATTCTGCCAGGCACATGGATGTGCCTCACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
ENSMUST00000171635.8
CDS-3UTR CCA 90 bp AGTGAGGCACATCCATGTGCCTGGCAGAATGGCATGAAGGTAGGAGCGGAGATGCAGGCCCATCCAGGTTaGTCCTTTAGCCTTAGAAGT +
Preference number: 4 (lower is better)
Translates to: SEAHPCAWQNGMKVGAEMQAHPG*SFSLRS
Trigger: ACTTCTAAGGCTAAAGGACCAACCTGGATGGGCCTG...CATCTCCGCTCCTACCTTCATGCCATTCTGCCAGGCACATGGATGTGCCTCACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000171635.8
CDS-3UTR CCA 90 bp AGTGAGGCACATCCATGTGCCTGGCAGAATGGCATGAAGGTAGGAGCGGAGATGCTGCCTCTCGGTATTTaGGGTTTTGGAGACTGCCAA +
Preference number: 4 (lower is better)
Translates to: SEAHPCAWQNGMKVGAEMLPLGI*GFGDCQ
Trigger: TTGGCAGTCTCCAAAACCCCAAATACCGAGAGGCAG...CATCTCCGCTCCTACCTTCATGCCATTCTGCCAGGCACATGGATGTGCCTCACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171635.8
CDS-3UTR GCA 90 bp CAGAGCCTTTTTCACGATCCTGAGGCCAACAGGCAGGAAGAAGGAGCTGGCACGTTCTCTTGTTCCTTCTaGCTCTCGGTATTTGGGGTT +
Preference number: 4 (lower is better)
Translates to: QSLFHDPEANRQEEGAGTFSCSF*LSVFGV
Trigger: AACCCCAAATACCGAGAGGCAGAAGGAACAAGAGAA...CGTGCCAGCTCCTTCTTCCTGCCTGTTGGCCTCAGGATCGTGAAAAAGGCTCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
CDS-3UTR GCA 90 bp AGTGAGGCACATCCATGTGCCTGGCAGAATGGCATGAAGGTAGGAGCGGAGATGTGTATGGACTCATTCTaGCCCTGGAAGATGGGAATC +
Preference number: 4 (lower is better)
Translates to: SEAHPCAWQNGMKVGAEMCMDSF*PWKMGI
Trigger: GATTCCCATCTTCCAGGGGCAGAATGAGTCCATACA...CATCTCCGCTCCTACCTTCATGCCATTCTGCCAGGCACATGGATGTGCCTCACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
ENSMUST00000171635.8
CDS-3UTR GCA 90 bp AGTGAGGCACATCCATGTGCCTGGCAGAATGGCATGAAGGTAGGAGCGGAGATGTTCAGTGCATGGGGTTaGAGACTTCTTGCAGATCCA +
Preference number: 4 (lower is better)
Translates to: SEAHPCAWQNGMKVGAEMFSAWG*RLLADP
Trigger: TGGATCTGCAAGAAGTCTGCAACCCCATGCACTGAA...CATCTCCGCTCCTACCTTCATGCCATTCTGCCAGGCACATGGATGTGCCTCACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000171635.8
CDS-3UTR CCA 90 bp GCCAACAGGCAGGAAGAAGGAGCTGGCACGAAAGTGAGGCACATCCATGTGCCTAGATCTTCTCTTGTATaGACTCATTCTGCCCCTGGA +
Preference number: 4 (lower is better)
Translates to: ANRQEEGAGTKVRHIHVPRSSLV*THSAPG
Trigger: TCCAGGGGCAGAATGAGTCCATACAAGAGAAGATCT...AGGCACATGGATGTGCCTCACTTTCGTGCCAGCTCCTTCTTCCTGCCTGTTGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
CDS-3UTR CCA 90 bp GCCAACAGGCAGGAAGAAGGAGCTGGCACGAAAGTGAGGCACATCCATGTGCCTGGAAGCTGGAGATCTTaGAAAGAAGTTCAGCCTTCA +
Preference number: 4 (lower is better)
Translates to: ANRQEEGAGTKVRHIHVPGSWRS*KEVQPS
Trigger: TGAAGGCTGAACTTCTTTCCAAGATCTCCAGCTTCC...AGGCACATGGATGTGCCTCACTTTCGTGCCAGCTCCTTCTTCCTGCCTGTTGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
CDS-3UTR CCA 90 bp TTAGTGGATAAGAGTGCTGATGTGCAAGAAAGAGGGCCTGACCTTGAAGCCCTACTACCCAGAGCCACGTaGCCTCCTTCTTCAGGTCTG +
Preference number: 4 (lower is better)
Translates to: LVDKSADVQERGPDLEALLPRAT*PPSSGL
Trigger: CAGACCTGAAGAAGGAGGCCACGTGGCTCTGGGTAG...TAGGGCTTCAAGGTCAGGCCCTCTTTCTTGCACATCAGCACTCTTATCCACTAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084086.9
CDS-3UTR GCA 90 bp AGTGAGGCACATCCATGTGCCTGGCAGAATGGCATGAAGGTAGGAGCGGAGATGTTCTCTTGTTCCTTCTaGCTCTCGGTATTTGGGGTT +
Preference number: 4 (lower is better)
Translates to: SEAHPCAWQNGMKVGAEMFSCSF*LSVFGV
Trigger: AACCCCAAATACCGAGAGGCAGAAGGAACAAGAGAA...CATCTCCGCTCCTACCTTCATGCCATTCTGCCAGGCACATGGATGTGCCTCACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
ENSMUST00000171635.8
CDS-3UTR GCA 90 bp CAGAGCCTTTTTCACGATCCTGAGGCCAACAGGCAGGAAGAAGGAGCTGGCACGAGTTCAGTTTTCAGCTaGATCAGTTGCTCAGTGATC +
Preference number: 4 (lower is better)
Translates to: QSLFHDPEANRQEEGAGTSSVFS*ISCSVI
Trigger: GATCACTGAGCAACTGATGCAGCTGAAAACTGAACT...CGTGCCAGCTCCTTCTTCCTGCCTGTTGGCCTCAGGATCGTGAAAAAGGCTCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
CDS-3UTR GCA 90 bp AGTGAGGCACATCCATGTGCCTGGCAGAATGGCATGAAGGTAGGAGCGGAGATGTGCTGCAGGAAGGTCTaGTCTTCATCACTATTGATG +
Preference number: 4 (lower is better)
Translates to: SEAHPCAWQNGMKVGAEMCCRKV*SSSLLM
Trigger: CATCAATAGTGATGAAGAGCAGACCTTCCTGCAGCA...CATCTCCGCTCCTACCTTCATGCCATTCTGCCAGGCACATGGATGTGCCTCACT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000171635.8
CDS-3UTR CCA 90 bp GTGCAAGAAAGAGGGCCTGACCTTGAAGCCCTAGTAATTGTTAGAGGCCAGACAGACTCATTCTTCCCTTaGGAGATGGGGATCCTGGAC +
Preference number: 4 (lower is better)
Translates to: VQERGPDLEALVIVRGQTDSFFP*EMGILD
Trigger: GTCCAGGATCCCCATCTCCCAAGGGAAGAATGAGTC...TGTCTGGCCTCTAACAATTACTAGGGCTTCAAGGTCAGGCCCTCTTTCTTGCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
CDS-3UTR CCA 90 bp AGAGCCTTTTTCACGATCCTGAGGCCAACAGGCAGGAAGAAGGAGCTGGCACGAAGATCTTCTCTTGTATaGACTCATTCTGCCCCTGGA +
Preference number: 4 (lower is better)
Translates to: RAFFTILRPTGRKKELARRSSLV*THSAPG
Trigger: TCCAGGGGCAGAATGAGTCCATACAAGAGAAGATCT...TCGTGCCAGCTCCTTCTTCCTGCCTGTTGGCCTCAGGATCGTGAAAAAGGCTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
CDS-3UTR CCA 90 bp AGTGAGGCACATCCATGTGCCTGGCAGAATGGCATGAAGGTAGGAGCGGAGATGAGATCTTCTCTTGTATaGACTCATTCTGCCCCTGGA +
Preference number: 4 (lower is better)
Translates to: SEAHPCAWQNGMKVGAEMRSSLV*THSAPG
Trigger: TCCAGGGGCAGAATGAGTCCATACAAGAGAAGATCT...CATCTCCGCTCCTACCTTCATGCCATTCTGCCAGGCACATGGATGTGCCTCACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
ENSMUST00000171635.8
CDS-3UTR CCA 90 bp AGTGAGGCACATCCATGTGCCTGGCAGAATGGCATGAAGGTAGGAGCGGAGATGGGAAGCTGGAGATCTTaGAAAGAAGTTCAGCCTTCA +
Preference number: 4 (lower is better)
Translates to: SEAHPCAWQNGMKVGAEMGSWRS*KEVQPS
Trigger: TGAAGGCTGAACTTCTTTCCAAGATCTCCAGCTTCC...CATCTCCGCTCCTACCTTCATGCCATTCTGCCAGGCACATGGATGTGCCTCACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
ENSMUST00000171635.8
CDS-3UTR TCA 90 bp AGAGCCTTTTTCACGATCCTGAGGCCAACAGGCAGGAAGAAGGAGCTGGCACGAATCCTGCCAAACACTTaGTTCCAGAATTTGGTCGTA +
Preference number: 4 (lower is better)
Translates to: RAFFTILRPTGRKKELARILPNT*FQNLVV
Trigger: TACGACCAAATTCTGGAATCAAGTGTTTGGCAGGAT...TCGTGCCAGCTCCTTCTTCCTGCCTGTTGGCCTCAGGATCGTGAAAAAGGCTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
CDS-3UTR TCA 90 bp AGAGCCTTTTTCACGATCCTGAGGCCAACAGGCAGGAAGAAGGAGCTGGCACGATTTCTGGAATCTGGATaGCAGAGTAGAACCATCTAC +
Preference number: 4 (lower is better)
Translates to: RAFFTILRPTGRKKELARFLESG*QSRTIY
Trigger: GTAGATGGTTCTACTCTGTCATCCAGATTCCAGAAA...TCGTGCCAGCTCCTTCTTCCTGCCTGTTGGCCTCAGGATCGTGAAAAAGGCTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000084086.9
CDS-3UTR TCA 90 bp AGTGAGGCACATCCATGTGCCTGGCAGAATGGCATGAAGGTAGGAGCGGAGATGTTTCTGGAATCTGGATaGCAGAGTAGAACCATCTAC +
Preference number: 4 (lower is better)
Translates to: SEAHPCAWQNGMKVGAEMFLESG*QSRTIY
Trigger: GTAGATGGTTCTACTCTGTCATCCAGATTCCAGAAA...CATCTCCGCTCCTACCTTCATGCCATTCTGCCAGGCACATGGATGTGCCTCACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000171635.8
CDS-3UTR TCA 90 bp AGTGAGGCACATCCATGTGCCTGGCAGAATGGCATGAAGGTAGGAGCGGAGATGAGACTGCCAAACACTTaGTTCCAGAATTTGGTCGTA +
Preference number: 4 (lower is better)
Translates to: SEAHPCAWQNGMKVGAEMRLPNT*FQNLVV
Trigger: TACGACCAAATTCTGGAATCAAGTGTTTGGCAGTCT...CATCTCCGCTCCTACCTTCATGCCATTCTGCCAGGCACATGGATGTGCCTCACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171635.8
CDS-3UTR GCA 90 bp CCAGAGAAACCTGAAAGCAAAAGGACAATAGTGAGTCCCTTTGTGATAGTCAGCAGGAAGGAGAGCAGCTaGAGGACCAAGGGGACTTGG +
Preference number: 4 (lower is better)
Translates to: PEKPESKRTIVSPFVIVSRKESS*RTKGTW
Trigger: CCAAGTCCCCTTGGTCCTGCAGCTGCTCTCCTTCCT...GCTGACTATCACAAAGGGACTCACTATTGTCCTTTTGCTTTCAGGTTTCTCTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
CDS-3UTR GCA 90 bp AGTGAGGCACATCCATGTGCCTGGCAGAATGGCATGAAGGTAGGAGCGGAGATGAGTTCAGTTTTCAGCTaGATCAGTTGCTCAGTGATC +
Preference number: 4 (lower is better)
Translates to: SEAHPCAWQNGMKVGAEMSSVFS*ISCSVI
Trigger: GATCACTGAGCAACTGATGCAGCTGAAAACTGAACT...CATCTCCGCTCCTACCTTCATGCCATTCTGCCAGGCACATGGATGTGCCTCACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
ENSMUST00000171635.8
CDS-3UTR CCA 90 bp CCAGAGAAACCTGAAAGCAAAAGGACAATAGTGAGTCCCTTTGTGATAGTCAGCAGGACCAAGGGGACTTaGCTGTGTCCCGAGCATCCT +
Preference number: 4 (lower is better)
Translates to: PEKPESKRTIVSPFVIVSRTKGT*LCPEHP
Trigger: AGGATGCTCGGGACACAGCCAAGTCCCCTTGGTCCT...GCTGACTATCACAAAGGGACTCACTATTGTCCTTTTGCTTTCAGGTTTCTCTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
CDS-3UTR CCA 90 bp AGTGAGGCACATCCATGTGCCTGGCAGAATGGCATGAAGGTAGGAGCGGAGATGGGAAGATGGGAATCCTaGACAAGAGTTCAGTTTTCA +
Preference number: 4 (lower is better)
Translates to: SEAHPCAWQNGMKVGAEMGRWES*TRVQFS
Trigger: TGAAAACTGAACTCTTGTCCAGGATTCCCATCTTCC...CATCTCCGCTCCTACCTTCATGCCATTCTGCCAGGCACATGGATGTGCCTCACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
ENSMUST00000171635.8
CDS-3UTR CCA 90 bp CAACTCCTGTCTCAAGGGAGTAAAGAGCTATCAAAGAGAACACCAATGTCTTCTAGGACCAAGGGGACTTaGCTGTGTCCCGAGCATCCT +
Preference number: 4 (lower is better)
Translates to: QLLSQGSKELSKRTPMSSRTKGT*LCPEHP
Trigger: AGGATGCTCGGGACACAGCCAAGTCCCCTTGGTCCT...AGAAGACATTGGTGTTCTCTTTGATAGCTCTTTACTCCCTTGAGACAGGAGTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
CDS-3UTR GCA 90 bp GACACAGTCTTCCTCACCGATGTTGTTAGGCTCCCCTCTATTCCAATATTTCTGGTGTCCCGAGCATCCTaGCAAACACTTGATTCCAGA +
Preference number: 4 (lower is better)
Translates to: DTVFLTDVVRLPSIPIFLVSRAS*QTLDSR
Trigger: TCTGGAATCAAGTGTTTGGCAGGATGCTCGGGACAC...CAGAAATATTGGAATAGAGGGGAGCCTAACAACATCGGTGAGGAAGACTGTGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111014.8
CDS-3UTR GCA 90 bp TTAGTGGATAAGAGTGCTGATGTGCAAGAAAGAGGGCCTGACCTTGAAGCCCTATGTATGGACTCATTCTaGCCCTGGAAGATGGGAATC +
Preference number: 4 (lower is better)
Translates to: LVDKSADVQERGPDLEALCMDSF*PWKMGI
Trigger: GATTCCCATCTTCCAGGGGCAGAATGAGTCCATACA...TAGGGCTTCAAGGTCAGGCCCTCTTTCTTGCACATCAGCACTCTTATCCACTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
CDS-3UTR GCA 90 bp TTAGTGGATAAGAGTGCTGATGTGCAAGAAAGAGGGCCTGACCTTGAAGCCCTATTCAGTGCATGGGGTTaGAGACTTCTTGCAGATCCA +
Preference number: 4 (lower is better)
Translates to: LVDKSADVQERGPDLEALFSAWG*RLLADP
Trigger: TGGATCTGCAAGAAGTCTGCAACCCCATGCACTGAA...TAGGGCTTCAAGGTCAGGCCCTCTTTCTTGCACATCAGCACTCTTATCCACTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084086.9
CDS-3UTR CCA 90 bp AGAGTCATTCCAGCCATCCCCAGCAAATTCGACACAGTCTTCCTCACCGATGTTGGAAGCTGGAGATCTTaGAAAGAAGTTCAGCCTTCA +
Preference number: 4 (lower is better)
Translates to: RVIPAIPSKFDTVFLTDVGSWRS*KEVQPS
Trigger: TGAAGGCTGAACTTCTTTCCAAGATCTCCAGCTTCC...AACATCGGTGAGGAAGACTGTGTCGAATTTGCTGGGGATGGCTGGAATGACTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111014.8
CDS-3UTR TCA 90 bp CTAGACTACCTGACAATAGACAAATGGCTGGGGAGATGCTTAGTGGATAAGAGTAGACTTGGAAAAGAATaGTCAGCAGGAGCCCAGCCA +
Preference number: 4 (lower is better)
Translates to: LDYLTIDKWLGRCLVDKSRLGKE*SAGAQP
Trigger: TGGCTGGGCTCCTGCTGATCATTCTTTTCCAAGTCT...ACTCTTATCCACTAAGCATCTCCCCAGCCATTTGTCTATTGTCAGGTAGTCTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
CDS-3UTR GCA 90 bp CCAGAGAAACCTGAAAGCAAAAGGACAATAGTGAGTCCCTTTGTGATAGTCAGCGCCTTAGAAGTCTGCTaGAGGAAGGTCTGCTCTTCA +
Preference number: 4 (lower is better)
Translates to: PEKPESKRTIVSPFVIVSALEVC*RKVCSS
Trigger: TGAAGAGCAGACCTTCCTGCAGCAGACTTCTAAGGC...GCTGACTATCACAAAGGGACTCACTATTGTCCTTTTGCTTTCAGGTTTCTCTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084086.9
CDS-3UTR CCA 90 bp TACAGCAACAGTAAACTAGACTACCTGACAATAGACAAATGGCTGGGGAGATGCTCTGCCCCTGGAAGATaGGAATCCTGGACAAGAGTT +
Preference number: 4 (lower is better)
Translates to: YSNSKLDYLTIDKWLGRCSAPGR*ESWTRV
Trigger: AACTCTTGTCCAGGATTCCCATCTTCCAGGGGCAGA...GCATCTCCCCAGCCATTTGTCTATTGTCAGGTAGTCTAGTTTACTGTTGCTGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
CDS-3UTR CCA 90 bp AATGGAAAACACCCAGATTCTGAAAGCATCCTACATCAGGTAACTGCACTGAAGGACTCATTCTGCCCCTaGAAGATGGGAATCCTGGAC +
Preference number: 4 (lower is better)
Translates to: NGKHPDSESILHQVTALKDSFCP*KMGILD
Trigger: GTCCAGGATTCCCATCTTCCAGGGGCAGAATGAGTC...CTTCAGTGCAGTTACCTGATGTAGGATGCTTTCAGAATCTGGGTGTTTTCCATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
CDS-3UTR CCA 90 bp CAACTCCTGTCTCAAGGGAGTAAAGAGCTATCAAAGAGAACACCAATGTCTTCTGACTCATTCTGCCCCTaGAAGATGGGAATCCTGGAC +
Preference number: 4 (lower is better)
Translates to: QLLSQGSKELSKRTPMSSDSFCP*KMGILD
Trigger: GTCCAGGATTCCCATCTTCCAGGGGCAGAATGAGTC...AGAAGACATTGGTGTTCTCTTTGATAGCTCTTTACTCCCTTGAGACAGGAGTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
CDS-3UTR CCA 90 bp AGTGAGGCACATCCATGTGCCTGGCAGAATGGCATGAAGGTAGGAGCGGAGATGCTATTCCAATATTTCTaGAATCTGGATGACAGAGTA +
Preference number: 4 (lower is better)
Translates to: SEAHPCAWQNGMKVGAEMLFQYF*NLDDRV
Trigger: TACTCTGTCATCCAGATTCCAGAAATATTGGAATAG...CATCTCCGCTCCTACCTTCATGCCATTCTGCCAGGCACATGGATGTGCCTCACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000171635.8
CDS-3UTR TCA 90 bp TTAGTGGATAAGAGTGCTGATGTGCAAGAAAGAGGGCCTGACCTTGAAGCCCTAATCCTGCCAAACACTTaGTTCCAGAATTTGGTCGTA +
Preference number: 4 (lower is better)
Translates to: LVDKSADVQERGPDLEALILPNT*FQNLVV
Trigger: TACGACCAAATTCTGGAATCAAGTGTTTGGCAGGAT...TAGGGCTTCAAGGTCAGGCCCTCTTTCTTGCACATCAGCACTCTTATCCACTAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
CDS-3UTR GCA 90 bp CAACTCCTGTCTCAAGGGAGTAAAGAGCTATCAAAGAGAACACCAATGTCTTCTATGGAGCTAAGAGGCTaGATCTTGGCTTCTGTGGAG +
Preference number: 4 (lower is better)
Translates to: QLLSQGSKELSKRTPMSSMELRG*ILASVE
Trigger: CTCCACAGAAGCCAAGATGCAGCCTCTTAGCTCCAT...AGAAGACATTGGTGTTCTCTTTGATAGCTCTTTACTCCCTTGAGACAGGAGTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
CDS-3UTR CCA 90 bp CTAGACTACCTGACAATAGACAAATGGCTGGGGAGATGCTTAGTGGATAAGAGTCTGCCTCTCGGTATTTaGGGTTTTGGAGACTTGGAA +
Preference number: 4 (lower is better)
Translates to: LDYLTIDKWLGRCLVDKSLPLGI*GFGDLE
Trigger: TTCCAAGTCTCCAAAACCCCAAATACCGAGAGGCAG...ACTCTTATCCACTAAGCATCTCCCCAGCCATTTGTCTATTGTCAGGTAGTCTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
CDS-3UTR CCA 90 bp AATGGAAAACACCCAGATTCTGAAAGCATCCTACATCAGGTAACTGCACTGAAGTCTGCCCCTGGAAGATaGGAATCCTGGACAAGAGTT +
Preference number: 4 (lower is better)
Translates to: NGKHPDSESILHQVTALKSAPGR*ESWTRV
Trigger: AACTCTTGTCCAGGATTCCCATCTTCCAGGGGCAGA...CTTCAGTGCAGTTACCTGATGTAGGATGCTTTCAGAATCTGGGTGTTTTCCATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
3UTR CAA 72 bp TCCCCAGCAAATTCGACACAGTCTTCCTCACCGATGTaGTTAGGCTCCCCTCTATTCCAATATTTCTGGAAT +
Preference number: 4 (lower is better)
Translates to: SPANSTQSSSPM*LGSPLFQYFWN
Trigger: ATTCCAGAAATATTGGAATAGAGGGGAGCCTAACAACATCGGTGAGGAAGACTGTGTCGAATTTGCTGGGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111014.8
CDS-3UTR GCA 90 bp CTAGACTACCTGACAATAGACAAATGGCTGGGGAGATGCTTAGTGGATAAGAGTTTCTCTTGTTCCTTCTaGCTCTCGGTATTTGGGGTT +
Preference number: 4 (lower is better)
Translates to: LDYLTIDKWLGRCLVDKSFSCSF*LSVFGV
Trigger: AACCCCAAATACCGAGAGGCAGAAGGAACAAGAGAA...ACTCTTATCCACTAAGCATCTCCCCAGCCATTTGTCTATTGTCAGGTAGTCTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
CDS-3UTR GCA 90 bp CCAGAGAAACCTGAAAGCAAAAGGACAATAGTGAGTCCCTTTGTGATAGTCAGCTGCTGCAGGAAGGTCTaGTCTTCATCACTATTGATG +
Preference number: 4 (lower is better)
Translates to: PEKPESKRTIVSPFVIVSCCRKV*SSSLLM
Trigger: CATCAATAGTGATGAAGAGCAGACCTTCCTGCAGCA...GCTGACTATCACAAAGGGACTCACTATTGTCCTTTTGCTTTCAGGTTTCTCTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084086.9
CDS-3UTR GCA 90 bp CAACTCCTGTCTCAAGGGAGTAAAGAGCTATCAAAGAGAACACCAATGTCTTCTAGTTCAGTTTTCAGCTaGATCAGTTGCTCAGTGATC +
Preference number: 4 (lower is better)
Translates to: QLLSQGSKELSKRTPMSSSSVFS*ISCSVI
Trigger: GATCACTGAGCAACTGATGCAGCTGAAAACTGAACT...AGAAGACATTGGTGTTCTCTTTGATAGCTCTTTACTCCCTTGAGACAGGAGTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
CDS-3UTR CCA 90 bp AATGGAAAACACCCAGATTCTGAAAGCATCCTACATCAGGTAACTGCACTGAAGGGAAGATGGGAATCCTaGACAAGAGTTCAGTTTTCA +
Preference number: 4 (lower is better)
Translates to: NGKHPDSESILHQVTALKGRWES*TRVQFS
Trigger: TGAAAACTGAACTCTTGTCCAGGATTCCCATCTTCC...CTTCAGTGCAGTTACCTGATGTAGGATGCTTTCAGAATCTGGGTGTTTTCCATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
CDS TCA 90 bp GATGGGCCTTCCTCTGGAGATGGGGGCATGCCTGGGTCTGCTGGATaGCAGAGTAGAACCATCTACCCAGAGCCACGTGGCCTCCTTCTT +
Preference number: 5 (lower is better)
Translates to: DGPSSGDGGMPGSAG*QSRTIYPEPRGLLL
Trigger: AAGAAGGAGGCCACGTGGCTCTGGGTAGATGGTTCTACTCTGTCATCCAGCAGACCCAGGCATGCCCCCATCTCCAGAGGAAGGCCCATC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000188386.2
CDS-3UTR CAA 90 bp GCCAACAGGCAGGAAGAAGGAGCTGGCACGAAAGTGAGGCACATCCATGTGCCTCTAAGAGGCTGCATCTaGGCTTCTGTGGAGTCACTC +
Preference number: 5 (lower is better)
Translates to: ANRQEEGAGTKVRHIHVPLRGCI*ASVESL
Trigger: GAGTGACTCCACAGAAGCCAAGATGCAGCCTCTTAG...AGGCACATGGATGTGCCTCACTTTCGTGCCAGCTCCTTCTTCCTGCCTGTTGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
CDS-3UTR CAA 90 bp AGTGAGGCACATCCATGTGCCTGGCAGAATGGCATGAAGGTAGGAGCGGAGATGGGACTCATTCTTCCCTaGGGAGATGGGGATCCTGGA +
Preference number: 5 (lower is better)
Translates to: SEAHPCAWQNGMKVGAEMGLILP*GDGDPG
Trigger: TCCAGGATCCCCATCTCCCAAGGGAAGAATGAGTCC...CATCTCCGCTCCTACCTTCATGCCATTCTGCCAGGCACATGGATGTGCCTCACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
ENSMUST00000171635.8
CDS-3UTR CAA 90 bp CAGAGCCTTTTTCACGATCCTGAGGCCAACAGGCAGGAAGAAGGAGCTGGCACGCTTCAGTGCATGGGGTaGCAGACTTCTTGCAGATCC +
Preference number: 5 (lower is better)
Translates to: QSLFHDPEANRQEEGAGTLQCMG*QTSCRS
Trigger: GGATCTGCAAGAAGTCTGCAACCCCATGCACTGAAG...CGTGCCAGCTCCTTCTTCCTGCCTGTTGGCCTCAGGATCGTGAAAAAGGCTCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000084086.9
CDS TCA 90 bp AGTAGAACCATCTACCCAGAGCCACGTGGCCTCCTTCTTCAGGTCTaGCAGGCCCATCCAGGTTGGTCCTTTAGCCTTAGAAGTCTGCTG +
Preference number: 5 (lower is better)
Translates to: SRTIYPEPRGLLLQV*QAHPGWSFSLRSLL
Trigger: CAGCAGACTTCTAAGGCTAAAGGACCAACCTGGATGGGCCTGTCAGACCTGAAGAAGGAGGCCACGTGGCTCTGGGTAGATGGTTCTACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084086.9
ENSMUST00000171635.8
ENSMUST00000188386.2
CDS CCA 90 bp CCAGCCAAGAACAGGAAGGAGAGCAGCTGCAGGACCAAGGGGACTTaGCTGTGTCCCGAGCATCCTGCCAAACACTTGATTCCAGAATTT +
Preference number: 5 (lower is better)
Translates to: PAKNRKESSCRTKGT*LCPEHPAKHLIPEF
Trigger: AAATTCTGGAATCAAGTGTTTGGCAGGATGCTCGGGACACAGCCAAGTCCCCTTGGTCCTGCAGCTGCTCTCCTTCCTGTTCTTGGCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
CDS-3UTR CAA 90 bp AGTGAGGCACATCCATGTGCCTGGCAGAATGGCATGAAGGTAGGAGCGGAGATGCTAAGAGGCTGCATCTaGGCTTCTGTGGAGTCACTC +
Preference number: 5 (lower is better)
Translates to: SEAHPCAWQNGMKVGAEMLRGCI*ASVESL
Trigger: GAGTGACTCCACAGAAGCCAAGATGCAGCCTCTTAG...CATCTCCGCTCCTACCTTCATGCCATTCTGCCAGGCACATGGATGTGCCTCACT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
ENSMUST00000171635.8
CDS-3UTR CAA 90 bp AGAGCCTTTTTCACGATCCTGAGGCCAACAGGCAGGAAGAAGGAGCTGGCACGACTGGAGGATCTTCTCTaGTTCCTTCTGCCTCTCGGT +
Preference number: 5 (lower is better)
Translates to: RAFFTILRPTGRKKELARLEDLL*FLLPLG
Trigger: ACCGAGAGGCAGAAGGAACAAGAGAAGATCCTCCAG...TCGTGCCAGCTCCTTCTTCCTGCCTGTTGGCCTCAGGATCGTGAAAAAGGCTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
CDS-3UTR CAA 90 bp AGTGAGGCACATCCATGTGCCTGGCAGAATGGCATGAAGGTAGGAGCGGAGATGCTGGAGGATCTTCTCTaGTTCCTTCTGCCTCTCGGT +
Preference number: 5 (lower is better)
Translates to: SEAHPCAWQNGMKVGAEMLEDLL*FLLPLG
Trigger: ACCGAGAGGCAGAAGGAACAAGAGAAGATCCTCCAG...CATCTCCGCTCCTACCTTCATGCCATTCTGCCAGGCACATGGATGTGCCTCACT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
ENSMUST00000171635.8
CDS-3UTR CAA 90 bp AGTGAGGCACATCCATGTGCCTGGCAGAATGGCATGAAGGTAGGAGCGGAGATGCTTCAGTGCATGGGGTaGCAGACTTCTTGCAGATCC +
Preference number: 5 (lower is better)
Translates to: SEAHPCAWQNGMKVGAEMLQCMG*QTSCRS
Trigger: GGATCTGCAAGAAGTCTGCAACCCCATGCACTGAAG...CATCTCCGCTCCTACCTTCATGCCATTCTGCCAGGCACATGGATGTGCCTCACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000171635.8
CDS-3UTR CAA 90 bp AGTGAGGCACATCCATGTGCCTGGCAGAATGGCATGAAGGTAGGAGCGGAGATGTCTGCCTCTCGGTATTaGGGGTTTTGGAGACTGCCA +
Preference number: 5 (lower is better)
Translates to: SEAHPCAWQNGMKVGAEMSASRY*GFWRLP
Trigger: TGGCAGTCTCCAAAACCCCAAATACCGAGAGGCAGA...CATCTCCGCTCCTACCTTCATGCCATTCTGCCAGGCACATGGATGTGCCTCACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171635.8
CDS CCA 90 bp ATCAGTTGCTCAGTGATCTTCGCCTGCATGGACTCATTCTTCCCTTaGGAGATGGGGATCCTGGACGTAAGCTCATCTGTCAGCTGGGTC +
Preference number: 5 (lower is better)
Translates to: ISCSVIFACMDSFFP*EMGILDVSSSVSWV
Trigger: GACCCAGCTGACAGATGAGCTTACGTCCAGGATCCCCATCTCCCAAGGGAAGAATGAGTCCATGCAGGCGAAGATCACTGAGCAACTGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
ENSMUST00000171635.8
ENSMUST00000188386.2
CDS-3UTR CAA 90 bp GCCAACAGGCAGGAAGAAGGAGCTGGCACGAAAGTGAGGCACATCCATGTGCCTCTCAGAGATCTTCTCTaGTATGGACTCATTCTGCCC +
Preference number: 5 (lower is better)
Translates to: ANRQEEGAGTKVRHIHVPLRDLL*YGLILP
Trigger: GGGCAGAATGAGTCCATACAAGAGAAGATCTCTGAG...AGGCACATGGATGTGCCTCACTTTCGTGCCAGCTCCTTCTTCCTGCCTGTTGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
CDS-3UTR CAA 90 bp AGTGAGGCACATCCATGTGCCTGGCAGAATGGCATGAAGGTAGGAGCGGAGATGGGGAAGCTGGAGATCTaGGAAAGAAGTTCAGCCTTC +
Preference number: 5 (lower is better)
Translates to: SEAHPCAWQNGMKVGAEMGKLEI*ERSSAF
Trigger: GAAGGCTGAACTTCTTTCCAAGATCTCCAGCTTCCC...CATCTCCGCTCCTACCTTCATGCCATTCTGCCAGGCACATGGATGTGCCTCACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
ENSMUST00000171635.8
CDS-3UTR CAA 90 bp AGTGAGGCACATCCATGTGCCTGGCAGAATGGCATGAAGGTAGGAGCGGAGATGCTCAGAGATCTTCTCTaGTATGGACTCATTCTGCCC +
Preference number: 5 (lower is better)
Translates to: SEAHPCAWQNGMKVGAEMLRDLL*YGLILP
Trigger: GGGCAGAATGAGTCCATACAAGAGAAGATCTCTGAG...CATCTCCGCTCCTACCTTCATGCCATTCTGCCAGGCACATGGATGTGCCTCACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
ENSMUST00000171635.8
CDS-3UTR CAA 90 bp AGTGAGGCACATCCATGTGCCTGGCAGAATGGCATGAAGGTAGGAGCGGAGATGCTTCAGCTGCATCAGTaGCTCAGAGATCTTCTCTTG +
Preference number: 5 (lower is better)
Translates to: SEAHPCAWQNGMKVGAEMLQLHQ*LRDLLL
Trigger: CAAGAGAAGATCTCTGAGCAACTGATGCAGCTGAAG...CATCTCCGCTCCTACCTTCATGCCATTCTGCCAGGCACATGGATGTGCCTCACT
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
ENSMUST00000171635.8
CDS-3UTR CAA 90 bp AGTGAGGCACATCCATGTGCCTGGCAGAATGGCATGAAGGTAGGAGCGGAGATGCATCTGTACCAGCTGTaGGTAGATCTTCTCCTGCTT +
Preference number: 5 (lower is better)
Translates to: SEAHPCAWQNGMKVGAEMHLYQL*VDLLLL
Trigger: AAGCAGGAGAAGATCTACCAACAGCTGGTACAGATG...CATCTCCGCTCCTACCTTCATGCCATTCTGCCAGGCACATGGATGTGCCTCACT
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
ENSMUST00000171635.8
CDS-3UTR CAA 90 bp CAGAGCCTTTTTCACGATCCTGAGGCCAACAGGCAGGAAGAAGGAGCTGGCACGTCGGTATTTGGGGTTTaGGAGACTTGGAAAAGAATG +
Preference number: 5 (lower is better)
Translates to: QSLFHDPEANRQEEGAGTSVFGV*ETWKRM
Trigger: CATTCTTTTCCAAGTCTCCAAAACCCCAAATACCGA...CGTGCCAGCTCCTTCTTCCTGCCTGTTGGCCTCAGGATCGTGAAAAAGGCTCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
CDS TCA 90 bp GAATCCTGGACAAGAGTTCAGTTTTCAGCTGCATCAGTTGCTCAGTaGTCTTCGCCTGCATGGACTCATTCTTCCCTTGGGAGATGGGGA +
Preference number: 5 (lower is better)
Translates to: ESWTRVQFSAASVAQ*SSPAWTHSSLGRWG
Trigger: TCCCCATCTCCCAAGGGAAGAATGAGTCCATGCAGGCGAAGATCACTGAGCAACTGATGCAGCTGAAAACTGAACTCTTGTCCAGGATTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
ENSMUST00000171635.8
ENSMUST00000188386.2
CDS GCA 90 bp TGCCCCTGGAAGATGGGAATCCTGGACAAGAGTTCAGTTTTCAGCTaGATCAGTTGCTCAGTGATCTTCGCCTGCATGGACTCATTCTTC +
Preference number: 5 (lower is better)
Translates to: CPWKMGILDKSSVFS*ISCSVIFACMDSFF
Trigger: GAAGAATGAGTCCATGCAGGCGAAGATCACTGAGCAACTGATGCAGCTGAAAACTGAACTCTTGTCCAGGATTCCCATCTTCCAGGGGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
ENSMUST00000171635.8
ENSMUST00000188386.2
CDS GCA 90 bp AAGATGGGAATCCTGGACAAGAGTTCAGTTTTCAGCTGCATCAGTTaGTCAGTGATCTTCGCCTGCATGGACTCATTCTTCCCTTGGGAG +
Preference number: 5 (lower is better)
Translates to: KMGILDKSSVFSCIS*SVIFACMDSFFPWE
Trigger: CTCCCAAGGGAAGAATGAGTCCATGCAGGCGAAGATCACTGAGCAACTGATGCAGCTGAAAACTGAACTCTTGTCCAGGATTCCCATCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
ENSMUST00000171635.8
ENSMUST00000188386.2
CDS GCA 90 bp TCTGTCAGCTGGGTCAGTTCCTGGAGGATCTTCTCTTGTTCCTTCTaGCTCTCGGTATTTGGGGTTTTGGAGACTGCCAAACACTTGATT +
Preference number: 5 (lower is better)
Translates to: SVSWVSSWRIFSCSF*LSVFGVLETAKHLI
Trigger: AATCAAGTGTTTGGCAGTCTCCAAAACCCCAAATACCGAGAGGCAGAAGGAACAAGAGAAGATCCTCCAGGAACTGACCCAGCTGACAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000171635.8
ENSMUST00000188386.2
CDS CCA 90 bp GTTCAGCCTTCAGCTGCATCAGTTGCTCAGAGATCTTCTCTTGTATaGACTCATTCTGCCCCTGGAAGATGGGAATCCTGGACAAGAGTT +
Preference number: 5 (lower is better)
Translates to: VQPSAASVAQRSSLV*THSAPGRWESWTRV
Trigger: AACTCTTGTCCAGGATTCCCATCTTCCAGGGGCAGAATGAGTCCATACAAGAGAAGATCTCTGAGCAACTGATGCAGCTGAAGGCTGAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
ENSMUST00000171635.8
ENSMUST00000188386.2
CDS CCA 90 bp TATTCCAATATTTCTGGAATCTCCTTCCAGAATGCATATTGTAGATaGGCCTTCCTCTGGAGATGGGGGCATGCCTGGGTCTGCTGGATG +
Preference number: 5 (lower is better)
Translates to: YSNISGISFQNAYCR*AFLWRWGHAWVCWM
Trigger: CATCCAGCAGACCCAGGCATGCCCCCATCTCCAGAGGAAGGCCCATCTACAATATGCATTCTGGAAGGAGATTCCAGAAATATTGGAATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000188386.2
CDS-3UTR CAA 90 bp CCAGAGAAACCTGAAAGCAAAAGGACAATAGTGAGTCCCTTTGTGATAGTCAGCGGACTCATTCTTCCCTaGGGAGATGGGGATCCTGGA +
Preference number: 5 (lower is better)
Translates to: PEKPESKRTIVSPFVIVSGLILP*GDGDPG
Trigger: TCCAGGATCCCCATCTCCCAAGGGAAGAATGAGTCC...GCTGACTATCACAAAGGGACTCACTATTGTCCTTTTGCTTTCAGGTTTCTCTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
CDS-3UTR CAA 90 bp CAGTCTTCCTCACCGATGTTGTTAGGCTCCCCTCTATTCCAATATTTCTGGAATGGACTCATTCTTCCCTaGGGAGATGGGGATCCTGGA +
Preference number: 5 (lower is better)
Translates to: QSSSPMLLGSPLFQYFWNGLILP*GDGDPG
Trigger: TCCAGGATCCCCATCTCCCAAGGGAAGAATGAGTCC...ATTCCAGAAATATTGGAATAGAGGGGAGCCTAACAACATCGGTGAGGAAGACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111014.8
CDS-3UTR CAA 90 bp GTGCAAGAAAGAGGGCCTGACCTTGAAGCCCTAGTAATTGTTAGAGGCCAGACACATCTGTACCAGCTGTaGGTAGATCTTCTCCTGCTT +
Preference number: 5 (lower is better)
Translates to: VQERGPDLEALVIVRGQTHLYQL*VDLLLL
Trigger: AAGCAGGAGAAGATCTACCAACAGCTGGTACAGATG...TGTCTGGCCTCTAACAATTACTAGGGCTTCAAGGTCAGGCCCTCTTTCTTGCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
CDS TCA 90 bp TGCTGCAGGAAGGTCTGCTCTTCATCACTATTGATGATGACTAGTTaGGCCTTCACTTCTTTGCAAGCTGTGACGGCGTCATTCCAGTTC +
Preference number: 5 (lower is better)
Translates to: CCRKVCSSSLLMMTS*AFTSLQAVTASFQF
Trigger: GAACTGGAATGACGCCGTCACAGCTTGCAAAGAAGTGAAGGCTCAACTAGTCATCATCAATAGTGATGAAGAGCAGACCTTCCTGCAGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084086.9
ENSMUST00000171635.8
ENSMUST00000188386.2
CDS GCA 90 bp AGCTGCATCAGTTGCTCAGAGATCTTCTCTTGTATGGACTCATTCTaGCCCTGGAAGATGGGAATCCTGGACAAGAGTTCAGTTTTCAGC +
Preference number: 5 (lower is better)
Translates to: SCISCSEIFSCMDSF*PWKMGILDKSSVFS
Trigger: GCTGAAAACTGAACTCTTGTCCAGGATTCCCATCTTCCAGGGGCAGAATGAGTCCATACAAGAGAAGATCTCTGAGCAACTGATGCAGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
ENSMUST00000171635.8
ENSMUST00000188386.2
CDS GCA 90 bp AAGCTGGAGATCTTGGAAAGAAGTTCAGCCTTCAGCTGCATCAGTTaGTCAGAGATCTTCTCTTGTATGGACTCATTCTGCCCCTGGAAG +
Preference number: 5 (lower is better)
Translates to: KLEILERSSAFSCIS*SEIFSCMDSFCPWK
Trigger: CTTCCAGGGGCAGAATGAGTCCATACAAGAGAAGATCTCTGAGCAACTGATGCAGCTGAAGGCTGAACTTCTTTCCAAGATCTCCAGCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
ENSMUST00000171635.8
ENSMUST00000188386.2
CDS CCA 90 bp GCTCAGAGATCTTCTCTTGTATGGACTCATTCTGCCCCTGGAAGATaGGAATCCTGGACAAGAGTTCAGTTTTCAGCTGCATCAGTTGCT +
Preference number: 5 (lower is better)
Translates to: AQRSSLVWTHSAPGR*ESWTRVQFSAASVA
Trigger: AGCAACTGATGCAGCTGAAAACTGAACTCTTGTCCAGGATTCCCATCTTCCAGGGGCAGAATGAGTCCATACAAGAGAAGATCTCTGAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
ENSMUST00000171635.8
ENSMUST00000188386.2
CDS CCA 90 bp CAGTTCCTGGAGGATCTTCTCTTGTTCCTTCTGCCTCTCGGTATTTaGGGTTTTGGAGACTGCCAAACACTTGATTCCAGAATTTGGTCG +
Preference number: 5 (lower is better)
Translates to: QFLEDLLLFLLPLGI*GFGDCQTLDSRIWS
Trigger: CGACCAAATTCTGGAATCAAGTGTTTGGCAGTCTCCAAAACCCCAAATACCGAGAGGCAGAAGGAACAAGAGAAGATCCTCCAGGAACTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000171635.8
ENSMUST00000188386.2
CDS-3UTR CAA 90 bp CTAGACTACCTGACAATAGACAAATGGCTGGGGAGATGCTTAGTGGATAAGAGTCTAAGAGGCTGCATCTaGGCTTCTGTGGAGTCACTC +
Preference number: 5 (lower is better)
Translates to: LDYLTIDKWLGRCLVDKSLRGCI*ASVESL
Trigger: GAGTGACTCCACAGAAGCCAAGATGCAGCCTCTTAG...ACTCTTATCCACTAAGCATCTCCCCAGCCATTTGTCTATTGTCAGGTAGTCTAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
CDS-3UTR CAA 90 bp GACACAGTCTTCCTCACCGATGTTGTTAGGCTCCCCTCTATTCCAATATTTCTGTCTGCCTCTCGGTATTaGGGGTTTTGGAGACTTGGA +
Preference number: 5 (lower is better)
Translates to: DTVFLTDVVRLPSIPIFLSASRY*GFWRLG
Trigger: TCCAAGTCTCCAAAACCCCAAATACCGAGAGGCAGA...CAGAAATATTGGAATAGAGGGGAGCCTAACAACATCGGTGAGGAAGACTGTGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000111014.8
CDS-3UTR CAA 90 bp CTAGACTACCTGACAATAGACAAATGGCTGGGGAGATGCTTAGTGGATAAGAGTCTGGAGGATCTTCTCTaGTTCCTTCTGCCTCTCGGT +
Preference number: 5 (lower is better)
Translates to: LDYLTIDKWLGRCLVDKSLEDLL*FLLPLG
Trigger: ACCGAGAGGCAGAAGGAACAAGAGAAGATCCTCCAG...ACTCTTATCCACTAAGCATCTCCCCAGCCATTTGTCTATTGTCAGGTAGTCTAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
CDS-3UTR CAA 90 bp AGAGCCTTTTTCACGATCCTGAGGCCAACAGGCAGGAAGAAGGAGCTGGCACGACAGATCCAGAACTTTTaGAGTTCACATTTAGAGTCA +
Preference number: 5 (lower is better)
Translates to: RAFFTILRPTGRKKELARQIQNF*SSHLES
Trigger: TGACTCTAAATGTGAACTCAAAAAGTTCTGGATCTG...TCGTGCCAGCTCCTTCTTCCTGCCTGTTGGCCTCAGGATCGTGAAAAAGGCTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000084086.9
CDS-3UTR CAA 90 bp AGTGAGGCACATCCATGTGCCTGGCAGAATGGCATGAAGGTAGGAGCGGAGATGCAGATCCAGAACTTTTaGAGTTCACATTTAGAGTCA +
Preference number: 5 (lower is better)
Translates to: SEAHPCAWQNGMKVGAEMQIQNF*SSHLES
Trigger: TGACTCTAAATGTGAACTCAAAAAGTTCTGGATCTG...CATCTCCGCTCCTACCTTCATGCCATTCTGCCAGGCACATGGATGTGCCTCACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000171635.8
CDS CCA 90 bp ATCAGTTGCTCAGAGATCTTCTCTTGTATGGACTCATTCTGCCCCTaGAAGATGGGAATCCTGGACAAGAGTTCAGTTTTCAGCTGCATC +
Preference number: 5 (lower is better)
Translates to: ISCSEIFSCMDSFCP*KMGILDKSSVFSCI
Trigger: GATGCAGCTGAAAACTGAACTCTTGTCCAGGATTCCCATCTTCCAGGGGCAGAATGAGTCCATACAAGAGAAGATCTCTGAGCAACTGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
ENSMUST00000171635.8
ENSMUST00000188386.2
CDS-3UTR CAA 90 bp ATAGACAAATGGCTGGGGAGATGCTTAGTGGATAAGAGTGCTGATGTGCAAGAATCTGCCTCTCGGTATTaGGGGTTTTGGAGACTTGGA +
Preference number: 5 (lower is better)
Translates to: IDKWLGRCLVDKSADVQESASRY*GFWRLG
Trigger: TCCAAGTCTCCAAAACCCCAAATACCGAGAGGCAGA...TTCTTGCACATCAGCACTCTTATCCACTAAGCATCTCCCCAGCCATTTGTCTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
CDS-3UTR CAA 90 bp CCAGAGAAACCTGAAAGCAAAAGGACAATAGTGAGTCCCTTTGTGATAGTCAGCCTCAGAGATCTTCTCTaGTATGGACTCATTCTGCCC +
Preference number: 5 (lower is better)
Translates to: PEKPESKRTIVSPFVIVSLRDLL*YGLILP
Trigger: GGGCAGAATGAGTCCATACAAGAGAAGATCTCTGAG...GCTGACTATCACAAAGGGACTCACTATTGTCCTTTTGCTTTCAGGTTTCTCTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
CDS-3UTR CAA 90 bp CAGTCTTCCTCACCGATGTTGTTAGGCTCCCCTCTATTCCAATATTTCTGGAATCTTCAGCTGCATCAGTaGCTCAGAGATCTTCTCTTG +
Preference number: 5 (lower is better)
Translates to: QSSSPMLLGSPLFQYFWNLQLHQ*LRDLLL
Trigger: CAAGAGAAGATCTCTGAGCAACTGATGCAGCTGAAG...ATTCCAGAAATATTGGAATAGAGGGGAGCCTAACAACATCGGTGAGGAAGACTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111014.8
CDS-3UTR CAA 90 bp AATGGAAAACACCCAGATTCTGAAAGCATCCTACATCAGGTAACTGCACTGAAGGGGAAGCTGGAGATCTaGGAAAGAAGTTCAGCCTTC +
Preference number: 5 (lower is better)
Translates to: NGKHPDSESILHQVTALKGKLEI*ERSSAF
Trigger: GAAGGCTGAACTTCTTTCCAAGATCTCCAGCTTCCC...CTTCAGTGCAGTTACCTGATGTAGGATGCTTTCAGAATCTGGGTGTTTTCCATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
CDS-3UTR CAA 90 bp CAACTCCTGTCTCAAGGGAGTAAAGAGCTATCAAAGAGAACACCAATGTCTTCTGGGAAGCTGGAGATCTaGGAAAGAAGTTCAGCCTTC +
Preference number: 5 (lower is better)
Translates to: QLLSQGSKELSKRTPMSSGKLEI*ERSSAF
Trigger: GAAGGCTGAACTTCTTTCCAAGATCTCCAGCTTCCC...AGAAGACATTGGTGTTCTCTTTGATAGCTCTTTACTCCCTTGAGACAGGAGTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
CDS-3UTR CAA 90 bp CCAGAGAAACCTGAAAGCAAAAGGACAATAGTGAGTCCCTTTGTGATAGTCAGCCATCTGTACCAGCTGTaGGTAGATCTTCTCCTGCTT +
Preference number: 5 (lower is better)
Translates to: PEKPESKRTIVSPFVIVSHLYQL*VDLLLL
Trigger: AAGCAGGAGAAGATCTACCAACAGCTGGTACAGATG...GCTGACTATCACAAAGGGACTCACTATTGTCCTTTTGCTTTCAGGTTTCTCTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
CDS-3UTR CAA 90 bp GACACAGTCTTCCTCACCGATGTTGTTAGGCTCCCCTCTATTCCAATATTTCTGTCGGTATTTGGGGTTTaGGAGACTTGGAAAAGAATG +
Preference number: 5 (lower is better)
Translates to: DTVFLTDVVRLPSIPIFLSVFGV*ETWKRM
Trigger: CATTCTTTTCCAAGTCTCCAAAACCCCAAATACCGA...CAGAAATATTGGAATAGAGGGGAGCCTAACAACATCGGTGAGGAAGACTGTGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000111014.8
CDS-3UTR CAA 90 bp CAACTCCTGTCTCAAGGGAGTAAAGAGCTATCAAAGAGAACACCAATGTCTTCTCTTCAGCTGCATCAGTaGCTCAGAGATCTTCTCTTG +
Preference number: 5 (lower is better)
Translates to: QLLSQGSKELSKRTPMSSLQLHQ*LRDLLL
Trigger: CAAGAGAAGATCTCTGAGCAACTGATGCAGCTGAAG...AGAAGACATTGGTGTTCTCTTTGATAGCTCTTTACTCCCTTGAGACAGGAGTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
CDS TCA 72 bp TCCTCTGGAGATGGGGGCATGCCTGGGTCTGCTGGATaGCAGAGTAGAACCATCTACCCAGAGCCACGTGGC +
Preference number: 6 (lower is better)
Translates to: SSGDGGMPGSAG*QSRTIYPEPRG
Trigger: GCCACGTGGCTCTGGGTAGATGGTTCTACTCTGTCATCCAGCAGACCCAGGCATGCCCCCATCTCCAGAGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000188386.2
CDS TCA 72 bp ATCTACCCAGAGCCACGTGGCCTCCTTCTTCAGGTCTaGCAGGCCCATCCAGGTTGGTCCTTTAGCCTTAGA +
Preference number: 6 (lower is better)
Translates to: IYPEPRGLLLQV*QAHPGWSFSLR
Trigger: TCTAAGGCTAAAGGACCAACCTGGATGGGCCTGTCAGACCTGAAGAAGGAGGCCACGTGGCTCTGGGTAGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084086.9
ENSMUST00000171635.8
ENSMUST00000188386.2
CDS CCA 72 bp TCCTTCCAGAATGCATATTGTAGATGGGCCTTCCTCTaGAGATGGGGGCATGCCTGGGTCTGCTGGATGACA +
Preference number: 6 (lower is better)
Translates to: SFQNAYCRWAFL*RWGHAWVCWMT
Trigger: TGTCATCCAGCAGACCCAGGCATGCCCCCATCTCCAGAGGAAGGCCCATCTACAATATGCATTCTGGAAGGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000188386.2
CDS CAA 90 bp CATCAGTTGCTCAGTGATCTTCGCCTGCATGGACTCATTCTTCCCTaGGGAGATGGGGATCCTGGACGTAAGCTCATCTGTCAGCTGGGT +
Preference number: 6 (lower is better)
Translates to: HQLLSDLRLHGLILP*GDGDPGRKLICQLG
Trigger: ACCCAGCTGACAGATGAGCTTACGTCCAGGATCCCCATCTCCCAAGGGAAGAATGAGTCCATGCAGGCGAAGATCACTGAGCAACTGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
ENSMUST00000171635.8
ENSMUST00000188386.2
CDS CCA 72 bp CTGGACGTAAGCTCATCTGTCAGCTGGGTCAGTTCCTaGAGGATCTTCTCTTGTTCCTTCTGCCTCTCGGTA +
Preference number: 6 (lower is better)
Translates to: LDVSSSVSWVSS*RIFSCSFCLSV
Trigger: TACCGAGAGGCAGAAGGAACAAGAGAAGATCCTCCAGGAACTGACCCAGCTGACAGATGAGCTTACGTCCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
ENSMUST00000171635.8
ENSMUST00000188386.2
CDS CCA 72 bp GAGATGGGGATCCTGGACGTAAGCTCATCTGTCAGCTaGGTCAGTTCCTGGAGGATCTTCTCTTGTTCCTTC +
Preference number: 6 (lower is better)
Translates to: EMGILDVSSSVS*VSSWRIFSCSF
Trigger: GAAGGAACAAGAGAAGATCCTCCAGGAACTGACCCAGCTGACAGATGAGCTTACGTCCAGGATCCCCATCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
ENSMUST00000171635.8
ENSMUST00000188386.2
CDS CCA 72 bp TCAGTGATCTTCGCCTGCATGGACTCATTCTTCCCTTaGGAGATGGGGATCCTGGACGTAAGCTCATCTGTC +
Preference number: 6 (lower is better)
Translates to: SVIFACMDSFFP*EMGILDVSSSV
Trigger: GACAGATGAGCTTACGTCCAGGATCCCCATCTCCCAAGGGAAGAATGAGTCCATGCAGGCGAAGATCACTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
ENSMUST00000171635.8
ENSMUST00000188386.2
CDS CAA 72 bp CTCAGTGATCTTCGCCTGCATGGACTCATTCTTCCCTaGGGAGATGGGGATCCTGGACGTAAGCTCATCTGT +
Preference number: 6 (lower is better)
Translates to: LSDLRLHGLILP*GDGDPGRKLIC
Trigger: ACAGATGAGCTTACGTCCAGGATCCCCATCTCCCAAGGGAAGAATGAGTCCATGCAGGCGAAGATCACTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
ENSMUST00000171635.8
ENSMUST00000188386.2
CDS CAA 90 bp CGTAAGCTCATCTGTCAGCTGGGTCAGTTCCTGGAGGATCTTCTCTaGTTCCTTCTGCCTCTCGGTATTTGGGGTTTTGGAGACTGCCAA +
Preference number: 6 (lower is better)
Translates to: RKLICQLGQFLEDLL*FLLPLGIWGFGDCQ
Trigger: TTGGCAGTCTCCAAAACCCCAAATACCGAGAGGCAGAAGGAACAAGAGAAGATCCTCCAGGAACTGACCCAGCTGACAGATGAGCTTACG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000171635.8
ENSMUST00000188386.2
CDS GCA 72 bp GTTTTCAGCTGCATCAGTTGCTCAGTGATCTTCGCCTaGATGGACTCATTCTTCCCTTGGGAGATGGGGATC +
Preference number: 6 (lower is better)
Translates to: VFSCISCSVIFA*MDSFFPWEMGI
Trigger: GATCCCCATCTCCCAAGGGAAGAATGAGTCCATGCAGGCGAAGATCACTGAGCAACTGATGCAGCTGAAAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
ENSMUST00000171635.8
ENSMUST00000188386.2
CDS CCA 72 bp ATTTCTGGAATCTCCTTCCAGAATGCATATTGTAGATaGGCCTTCCTCTGGAGATGGGGGCATGCCTGGGTC +
Preference number: 6 (lower is better)
Translates to: ISGISFQNAYCR*AFLWRWGHAWV
Trigger: GACCCAGGCATGCCCCCATCTCCAGAGGAAGGCCCATCTACAATATGCATTCTGGAAGGAGATTCCAGAAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000188386.2
CDS CAA 90 bp CGTAAGCTCATCTGTCAGCTGGGTCAGTTCCTGGAGGATCTTCTCTaGTTCCTTCTGCCTCTCGGTATTTGGGGTTTTGGAGACTTGGAA +
Preference number: 6 (lower is better)
Translates to: RKLICQLGQFLEDLL*FLLPLGIWGFGDLE
Trigger: TTCCAAGTCTCCAAAACCCCAAATACCGAGAGGCAGAAGGAACAAGAGAAGATCCTCCAGGAACTGACCCAGCTGACAGATGAGCTTACG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
CDS GCA 72 bp TGGGTCAGTTCCTGGAGGATCTTCTCTTGTTCCTTCTaGCTCTCGGTATTTGGGGTTTTGGAGACTGCCAAA +
Preference number: 6 (lower is better)
Translates to: WVSSWRIFSCSF*LSVFGVLETAK
Trigger: TTTGGCAGTCTCCAAAACCCCAAATACCGAGAGGCAGAAGGAACAAGAGAAGATCCTCCAGGAACTGACCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000171635.8
ENSMUST00000188386.2
CDS CCA 72 bp TCAGCTGCATCAGTTGCTCAGAGATCTTCTCTTGTATaGACTCATTCTGCCCCTGGAAGATGGGAATCCTGG +
Preference number: 6 (lower is better)
Translates to: SAASVAQRSSLV*THSAPGRWESW
Trigger: CCAGGATTCCCATCTTCCAGGGGCAGAATGAGTCCATACAAGAGAAGATCTCTGAGCAACTGATGCAGCTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
ENSMUST00000171635.8
ENSMUST00000188386.2
CDS CAA 90 bp GAAGATGGGAATCCTGGACAAGAGTTCAGTTTTCAGCTGCATCAGTaGCTCAGTGATCTTCGCCTGCATGGACTCATTCTTCCCTTGGGA +
Preference number: 6 (lower is better)
Translates to: EDGNPGQEFSFQLHQ*LSDLRLHGLILPLG
Trigger: TCCCAAGGGAAGAATGAGTCCATGCAGGCGAAGATCACTGAGCAACTGATGCAGCTGAAAACTGAACTCTTGTCCAGGATTCCCATCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
ENSMUST00000171635.8
ENSMUST00000188386.2
CDS TCA 72 bp ACAAGAGTTCAGTTTTCAGCTGCATCAGTTGCTCAGTaGTCTTCGCCTGCATGGACTCATTCTTCCCTTGGG +
Preference number: 6 (lower is better)
Translates to: TRVQFSAASVAQ*SSPAWTHSSLG
Trigger: CCCAAGGGAAGAATGAGTCCATGCAGGCGAAGATCACTGAGCAACTGATGCAGCTGAAAACTGAACTCTTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
ENSMUST00000171635.8
ENSMUST00000188386.2
CDS GCA 72 bp TGGGTCAGTTCCTGGAGGATCTTCTCTTGTTCCTTCTaGCTCTCGGTATTTGGGGTTTTGGAGACTTGGAAA +
Preference number: 6 (lower is better)
Translates to: WVSSWRIFSCSF*LSVFGVLETWK
Trigger: TTTCCAAGTCTCCAAAACCCCAAATACCGAGAGGCAGAAGGAACAAGAGAAGATCCTCCAGGAACTGACCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
CDS GCA 72 bp CCCATCCAGGTTGGTCCTTTAGCCTTAGAAGTCTGCTaGAGGAAGGTCTGCTCTTCATCACTATTGATGATG +
Preference number: 6 (lower is better)
Translates to: PIQVGPLALEVC*RKVCSSSLLMM
Trigger: CATCATCAATAGTGATGAAGAGCAGACCTTCCTGCAGCAGACTTCTAAGGCTAAAGGACCAACCTGGATGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084086.9
ENSMUST00000171635.8
ENSMUST00000188386.2
CDS CCA 72 bp GTATGGACTCATTCTGCCCCTGGAAGATGGGAATCCTaGACAAGAGTTCAGTTTTCAGCTGCATCAGTTGCT +
Preference number: 6 (lower is better)
Translates to: VWTHSAPGRWES*TRVQFSAASVA
Trigger: AGCAACTGATGCAGCTGAAAACTGAACTCTTGTCCAGGATTCCCATCTTCCAGGGGCAGAATGAGTCCATAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
ENSMUST00000171635.8
ENSMUST00000188386.2
CDS CAA 72 bp AGCCTTCAGCTGCATCAGTTGCTCAGAGATCTTCTCTaGTATGGACTCATTCTGCCCCTGGAAGATGGGAAT +
Preference number: 6 (lower is better)
Translates to: SLQLHQLLRDLL*YGLILPLEDGN
Trigger: ATTCCCATCTTCCAGGGGCAGAATGAGTCCATACAAGAGAAGATCTCTGAGCAACTGATGCAGCTGAAGGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
ENSMUST00000171635.8
ENSMUST00000188386.2
CDS CAA 90 bp AAGAAGTTCAGCCTTCAGCTGCATCAGTTGCTCAGAGATCTTCTCTaGTATGGACTCATTCTGCCCCTGGAAGATGGGAATCCTGGACAA +
Preference number: 6 (lower is better)
Translates to: KKFSLQLHQLLRDLL*YGLILPLEDGNPGQ
Trigger: TTGTCCAGGATTCCCATCTTCCAGGGGCAGAATGAGTCCATACAAGAGAAGATCTCTGAGCAACTGATGCAGCTGAAGGCTGAACTTCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
ENSMUST00000171635.8
ENSMUST00000188386.2
CDS CAA 90 bp GAAGCTGGAGATCTTGGAAAGAAGTTCAGCCTTCAGCTGCATCAGTaGCTCAGAGATCTTCTCTTGTATGGACTCATTCTGCCCCTGGAA +
Preference number: 6 (lower is better)
Translates to: EAGDLGKKFSLQLHQ*LRDLLLYGLILPLE
Trigger: TTCCAGGGGCAGAATGAGTCCATACAAGAGAAGATCTCTGAGCAACTGATGCAGCTGAAGGCTGAACTTCTTTCCAAGATCTCCAGCTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
ENSMUST00000171635.8
ENSMUST00000188386.2
CDS CAA 90 bp TTCCAGCCATCCCCAGCAAATTCGACACAGTCTTCCTCACCGATGTaGTTAGGCTCCCCTCTATTCCAATATTTCTGGAATCTCCTTCCA +
Preference number: 6 (lower is better)
Translates to: FQPSPANSTQSSSPM*LGSPLFQYFWNLLP
Trigger: TGGAAGGAGATTCCAGAAATATTGGAATAGAGGGGAGCCTAACAACATCGGTGAGGAAGACTGTGTCGAATTTGCTGGGGATGGCTGGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000188386.2
CDS CAA 90 bp TGGAGGATCTTCTCTTGTTCCTTCTGCCTCTCGGTATTTGGGGTTTaGGAGACTGCCAAACACTTGATTCCAGAATTTGGTCGTAGTCTG +
Preference number: 6 (lower is better)
Translates to: WRIFSCSFCLSVFGV*ETAKHLIPEFGRSL
Trigger: CAGACTACGACCAAATTCTGGAATCAAGTGTTTGGCAGTCTCCAAAACCCCAAATACCGAGAGGCAGAAGGAACAAGAGAAGATCCTCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000171635.8
ENSMUST00000188386.2
CDS GCA 72 bp AGTTGCTCAGAGATCTTCTCTTGTATGGACTCATTCTaGCCCTGGAAGATGGGAATCCTGGACAAGAGTTCA +
Preference number: 6 (lower is better)
Translates to: SCSEIFSCMDSF*PWKMGILDKSS
Trigger: TGAACTCTTGTCCAGGATTCCCATCTTCCAGGGGCAGAATGAGTCCATACAAGAGAAGATCTCTGAGCAACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
ENSMUST00000171635.8
ENSMUST00000188386.2
CDS CCA 72 bp TCTTCTCTTGTATGGACTCATTCTGCCCCTGGAAGATaGGAATCCTGGACAAGAGTTCAGTTTTCAGCTGCA +
Preference number: 6 (lower is better)
Translates to: SSLVWTHSAPGR*ESWTRVQFSAA
Trigger: TGCAGCTGAAAACTGAACTCTTGTCCAGGATTCCCATCTTCCAGGGGCAGAATGAGTCCATACAAGAGAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
ENSMUST00000171635.8
ENSMUST00000188386.2
CDS TCA 72 bp AAGGTCTGCTCTTCATCACTATTGATGATGACTAGTTaGGCCTTCACTTCTTTGCAAGCTGTGACGGCGTCA +
Preference number: 6 (lower is better)
Translates to: KVCSSSLLMMTS*AFTSLQAVTAS
Trigger: TGACGCCGTCACAGCTTGCAAAGAAGTGAAGGCTCAACTAGTCATCATCAATAGTGATGAAGAGCAGACCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084086.9
ENSMUST00000171635.8
ENSMUST00000188386.2
CDS CCA 72 bp TCAGAGATCTTCTCTTGTATGGACTCATTCTGCCCCTaGAAGATGGGAATCCTGGACAAGAGTTCAGTTTTC +
Preference number: 6 (lower is better)
Translates to: SEIFSCMDSFCP*KMGILDKSSVF
Trigger: GAAAACTGAACTCTTGTCCAGGATTCCCATCTTCCAGGGGCAGAATGAGTCCATACAAGAGAAGATCTCTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
ENSMUST00000171635.8
ENSMUST00000188386.2
CDS CAA 72 bp CAGGCGGAAGAGTTCAGTCTTCATCTGTACCAGCTGTaGGTAGATCTTCTCCTGCTTAGAATCATCCTTTAC +
Preference number: 6 (lower is better)
Translates to: QAEEFSLHLYQL*VDLLLLRIILY
Trigger: GTAAAGGATGATTCTAAGCAGGAGAAGATCTACCAACAGCTGGTACAGATGAAGACTGAACTCTTCCGCCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084086.9
ENSMUST00000171635.8
ENSMUST00000188386.2
CDS GCA 72 bp ATCTTGGAAAGAAGTTCAGCCTTCAGCTGCATCAGTTaGTCAGAGATCTTCTCTTGTATGGACTCATTCTGC +
Preference number: 6 (lower is better)
Translates to: ILERSSAFSCIS*SEIFSCMDSFC
Trigger: GCAGAATGAGTCCATACAAGAGAAGATCTCTGAGCAACTGATGCAGCTGAAGGCTGAACTTCTTTCCAAGAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
ENSMUST00000171635.8
ENSMUST00000188386.2
CDS CAA 72 bp GATCTTGGAAAGAAGTTCAGCCTTCAGCTGCATCAGTaGCTCAGAGATCTTCTCTTGTATGGACTCATTCTG +
Preference number: 6 (lower is better)
Translates to: DLGKKFSLQLHQ*LRDLLLYGLIL
Trigger: CAGAATGAGTCCATACAAGAGAAGATCTCTGAGCAACTGATGCAGCTGAAGGCTGAACTTCTTTCCAAGATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084086.9
ENSMUST00000111014.8
ENSMUST00000171635.8
ENSMUST00000188386.2
CDS CAA 72 bp AGGAAGGTAGAGTTCAGTCTTCATCTGTACCAGCTGTaGGTAGATCTTCTCCTGCTTAGAATCATCCTTTAC +
Preference number: 6 (lower is better)
Translates to: RKVEFSLHLYQL*VDLLLLRIILY
Trigger: GTAAAGGATGATTCTAAGCAGGAGAAGATCTACCAACAGCTGGTACAGATGAAGACTGAACTCTACCTTCCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111014.8