Pregenerated sensors for CD209A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031494Ensembl transcript IDs: ENSMUST00000012847.3, ENSMUST00000207979.2, ENSMUST00000208960.2
Found 63 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TTTAGTAGGTGTGAGTACTCAGGATCAATTGCACATGGCAATATGTaGTCTCTACTCAGAAAGGAAGACAGAGGAGATGAAAGGAACCCA | + |
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Preference number: 1 (lower is better) Translates to: FSRCEYSGSIAHGNM*SLLRKEDRGDERNP Trigger: TGGGTTCCTTTCATCTCCTCTGTCTTCCTTTCTGAGTAGAGACCACATATTGCCATGTGCAATTGATCCTGAGTACTCACACCTACTAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000012847.3 |
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| 3UTR-3UTR CCA 90 bp | GTCAAAGGTGGACCAGAGCCACAACCACTAACCCAAAGAGAACCTGCAGACATCAGGGTTTTGGGACTGTaGAGATGGTGGAGGGAGTTG | + |
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Preference number: 2 (lower is better) Translates to: VKGGPEPQPLTQREPADIRVLGL*RWWREL Trigger: CAACTCCCTCCACCATCTCCACAGTCCCAAAACCCT...GATGTCTGCAGGTTCTCTTTGGGTTAGTGGTTGTGGCTCTGGTCCACCTTTGAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000012847.3 ENSMUST00000208960.2 |
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| 3UTR-3UTR CCA 90 bp | GAGCCACAACCACTAACCCAAAGAGAACCTGCAGACATCAGGAGACTATACATTAGGGTTTTGGGACTGTaGAGATGGTGGAGGGAGTTG | + |
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Preference number: 2 (lower is better) Translates to: EPQPLTQREPADIRRLYIRVLGL*RWWREL Trigger: CAACTCCCTCCACCATCTCCACAGTCCCAAAACCCT...AATGTATAGTCTCCTGATGTCTGCAGGTTCTCTTTGGGTTAGTGGTTGTGGCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000012847.3 ENSMUST00000208960.2 |
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| 3UTR-3UTR CCA 90 bp | TGTCTGTTTACTTCATTAAATGTCAAAGGTGGACCAGAGCCACAACCACTAACCCATTTGGCAGGGTTTTaGGACTGTGGAGATGGTGGA | + |
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Preference number: 2 (lower is better) Translates to: CLFTSLNVKGGPEPQPLTHLAGF*DCGDGG Trigger: TCCACCATCTCCACAGTCCCAAAACCCTGCCAAATG...GGTTAGTGGTTGTGGCTCTGGTCCACCTTTGACATTTAATGAAGTAAACAGACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000012847.3 ENSMUST00000208960.2 |
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| 3UTR-3UTR CCA 90 bp | CCAGGAGACAAACTGGACCTAGGAGCAATGCAGGAGACAAGCTACCTGCCAGAATGTCAAGGTTATCAATaGTCACAGACAAGTAGAATA | + |
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Preference number: 2 (lower is better) Translates to: PGDKLDLGAMQETSYLPECQGYQ*SQTSRI Trigger: TATTCTACTTGTCTGTGACCATTGATAACCTTGACA...TTCTGGCAGGTAGCTTGTCTCCTGCATTGCTCCTAGGTCCAGTTTGTCTCCTGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000012847.3 ENSMUST00000208960.2 |
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| 3UTR-3UTR CCA 90 bp | GCCAGAATAAAGTCTTACAGATCTTGTCAAGGTTATCAATGGTCACAGACAAGTAGGGTTTTGGGACTGTaGAGATGGTGGAGGGAGTTG | + |
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Preference number: 2 (lower is better) Translates to: ARIKSYRSCQGYQWSQTSRVLGL*RWWREL Trigger: CAACTCCCTCCACCATCTCCACAGTCCCAAAACCCT...ACTTGTCTGTGACCATTGATAACCTTGACAAGATCTGTAAGACTTTATTCTGGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000012847.3 ENSMUST00000207979.2 ENSMUST00000208960.2 |
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| 3UTR-3UTR GCA 90 bp | TGTCTGTTTACTTCATTAAATGTCAAAGGTGGACCAGAGCCACAACCACTAACCCTATGGGTAAAGTTCTaGCATTTGGCAGGGTTTTGG | + |
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Preference number: 2 (lower is better) Translates to: CLFTSLNVKGGPEPQPLTLWVKF*HLAGFW Trigger: CCAAAACCCTGCCAAATGGCAGAACTTTACCCATAG...GGTTAGTGGTTGTGGCTCTGGTCCACCTTTGACATTTAATGAAGTAAACAGACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000012847.3 ENSMUST00000208960.2 |
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| 3UTR-3UTR CCA 90 bp | GCCAGAATAAAGTCTTACAGATCTTGTCAAGGTTATCAATGGTCACAGACAAGTCATTTGGCAGGGTTTTaGGACTGTGGAGATGGTGGA | + |
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Preference number: 2 (lower is better) Translates to: ARIKSYRSCQGYQWSQTSHLAGF*DCGDGG Trigger: TCCACCATCTCCACAGTCCCAAAACCCTGCCAAATG...ACTTGTCTGTGACCATTGATAACCTTGACAAGATCTGTAAGACTTTATTCTGGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000012847.3 ENSMUST00000207979.2 ENSMUST00000208960.2 |
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| 3UTR-3UTR GCA 90 bp | TCAGGATCAATTGCACATGGCAATATGTGGTCTCTACTCAGAAAGGAAGACAGAAGGAGACAAGCTACCTaGCAGAATAAAGTCTTACAG | + |
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Preference number: 2 (lower is better) Translates to: SGSIAHGNMWSLLRKEDRRRQAT*QNKVLQ Trigger: CTGTAAGACTTTATTCTGGCAGGTAGCTTGTCTCCT...TCTGTCTTCCTTTCTGAGTAGAGACCACATATTGCCATGTGCAATTGATCCTGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000012847.3 |
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| 3UTR-3UTR GCA 90 bp | CCACAACCACTAACCCAAAGAGAACCTGCAGACATCAGGAGACTATACATTAATAGGAGACAAGCTACCTaGCAGAATAAAGTCTTACAG | + |
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Preference number: 2 (lower is better) Translates to: PQPLTQREPADIRRLYINRRQAT*QNKVLQ Trigger: CTGTAAGACTTTATTCTGGCAGGTAGCTTGTCTCCT...ATTAATGTATAGTCTCCTGATGTCTGCAGGTTCTCTTTGGGTTAGTGGTTGTGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000012847.3 ENSMUST00000208960.2 |
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| 3UTR-3UTR GCA 90 bp | GCCAGAATAAAGTCTTACAGATCTTGTCAAGGTTATCAATGGTCACAGACAAGTCTATGGGTAAAGTTCTaGCATTTGGCAGGGTTTTGG | + |
|
Preference number: 2 (lower is better) Translates to: ARIKSYRSCQGYQWSQTSLWVKF*HLAGFW Trigger: CCAAAACCCTGCCAAATGGCAGAACTTTACCCATAG...ACTTGTCTGTGACCATTGATAACCTTGACAAGATCTGTAAGACTTTATTCTGGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000012847.3 ENSMUST00000207979.2 ENSMUST00000208960.2 |
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| 3UTR-3UTR CCA 90 bp | ATCAGAGAAGGGTCCCATAGAAAGGTGTGCAGGGTAGATGAATTAAAATTTAGTGCACATGGCAATATGTaGTCTCTACTCAGAAAGGAA | + |
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Preference number: 2 (lower is better) Translates to: IREGSHRKVCRVDELKFSAHGNM*SLLRKE Trigger: TTCCTTTCTGAGTAGAGACCACATATTGCCATGTGC...ACTAAATTTTAATTCATCTACCCTGCACACCTTTCTATGGGACCCTTCTCTGAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000012847.3 |
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| 3UTR-3UTR CAA 90 bp | GAAAGGAAGACAGAGGAGATGAAAGGAACCCATTTAAGGACACCTCATGTCTGTCCATTTGGCAGGGTTTaGGGACTGTGGAGATGGTGG | + |
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Preference number: 3 (lower is better) Translates to: ERKTEEMKGTHLRTPHVCPFGRV*GLWRWW Trigger: CCACCATCTCCACAGTCCCAAAACCCTGCCAAATGG...ACAGACATGAGGTGTCCTTAAATGGGTTCCTTTCATCTCCTCTGTCTTCCTTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000012847.3 |
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| 3UTR-3UTR CAA 90 bp | ACCTGCCAGAATAAAGTCTTACAGATCTTGTCAAGGTTATCAATGGTCACAGACCCATTTGGCAGGGTTTaGGGACTGTGGAGATGGTGG | + |
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Preference number: 3 (lower is better) Translates to: TCQNKVLQILSRLSMVTDPFGRV*GLWRWW Trigger: CCACCATCTCCACAGTCCCAAAACCCTGCCAAATGG...GTCTGTGACCATTGATAACCTTGACAAGATCTGTAAGACTTTATTCTGGCAGGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000012847.3 ENSMUST00000207979.2 ENSMUST00000208960.2 |
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| 3UTR-3UTR CAA 90 bp | TGCAGGAGACAAGCTACCTGCCAGAATAAAGTCTTACAGATCTTGTCAAGGTTAGTAAAGTTCTGCCATTaGGCAGGGTTTTGGGACTGT | + |
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Preference number: 3 (lower is better) Translates to: CRRQATCQNKVLQILSRLVKFCH*AGFWDC Trigger: ACAGTCCCAAAACCCTGCCAAATGGCAGAACTTTAC...TAACCTTGACAAGATCTGTAAGACTTTATTCTGGCAGGTAGCTTGTCTCCTGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000012847.3 ENSMUST00000208960.2 |
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| 3UTR CCA 72 bp | TGTGAGTACTCAGGATCAATTGCACATGGCAATATGTaGTCTCTACTCAGAAAGGAAGACAGAGGAGATGAA | + |
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Preference number: 3 (lower is better) Translates to: CEYSGSIAHGNM*SLLRKEDRGDE Trigger: TTCATCTCCTCTGTCTTCCTTTCTGAGTAGAGACCACATATTGCCATGTGCAATTGATCCTGAGTACTCACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000012847.3 |
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| 3UTR CCA 72 bp | AGAATAAAGTCTTACAGATCTTGTCAAGGTTATCAATaGTCACAGACAAGTAGAATAAACTGGCATAGCTAT | + |
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Preference number: 3 (lower is better) Translates to: RIKSYRSCQGYQ*SQTSRINWHSY Trigger: ATAGCTATGCCAGTTTATTCTACTTGTCTGTGACCATTGATAACCTTGACAAGATCTGTAAGACTTTATTCT 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000012847.3 ENSMUST00000207979.2 ENSMUST00000208960.2 |
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| CDS-3UTR TCA 90 bp | AAGTTCTGCCATTTGGCAGGGTTTTGGGACTGTGGAGATGGTGGAGGGAGTTGGGGAAGCCAAAGCCTTTaGTGGAGTGCCTGGTGTGGC | + |
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Preference number: 4 (lower is better) Translates to: KFCHLAGFWDCGDGGGSWGSQSL*WSAWCG Trigger: GCCACACCAGGCACTCCATCAAAGGCTTTGGCTTCC...CCAACTCCCTCCACCATCTCCACAGTCCCAAAACCCTGCCAAATGGCAGAACTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000012847.3 ENSMUST00000207979.2 |
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| CDS-3UTR TCA 90 bp | AAGTTCTGCCATTTGGCAGGGTTTTGGGACTGTGGAGATGGTGGAGGGAGTTGGTCCAGCCGTCATCTCTaGACTCTGCACAGTCTTCCT | + |
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Preference number: 4 (lower is better) Translates to: KFCHLAGFWDCGDGGGSWSSRHL*TLHSLP Trigger: AGGAAGACTGTGCAGAGTTCAGAGATGACGGCTGGA...CCAACTCCCTCCACCATCTCCACAGTCCCAAAACCCTGCCAAATGGCAGAACTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000012847.3 ENSMUST00000207979.2 ENSMUST00000208960.2 |
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| CDS-3UTR TCA 90 bp | CCAGGAGACAAACTGGACCTAGGAGCAATGCAGGAGACAAGCTACCTGCCAGAATCCAGCCGTCATCTCTaGACTCTGCACAGTCTTCCT | + |
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Preference number: 4 (lower is better) Translates to: PGDKLDLGAMQETSYLPESSRHL*TLHSLP Trigger: AGGAAGACTGTGCAGAGTTCAGAGATGACGGCTGGA...TTCTGGCAGGTAGCTTGTCTCCTGCATTGCTCCTAGGTCCAGTTTGTCTCCTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000012847.3 ENSMUST00000208960.2 |
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| CDS-3UTR GCA 90 bp | AAGTTCTGCCATTTGGCAGGGTTTTGGGACTGTGGAGATGGTGGAGGGAGTTGGAAGCCTTTGATGGAGTaGCTGGTGTGGCTGGATGTC | + |
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Preference number: 4 (lower is better) Translates to: KFCHLAGFWDCGDGGGSWKPLME*LVWLDV Trigger: GACATCCAGCCACACCAGGCACTCCATCAAAGGCTT...CCAACTCCCTCCACCATCTCCACAGTCCCAAAACCCTGCCAAATGGCAGAACTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000012847.3 ENSMUST00000207979.2 |
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| CDS-3UTR GCA 90 bp | AAGTTCTGCCATTTGGCAGGGTTTTGGGACTGTGGAGATGGTGGAGGGAGTTGGACCAGAGGGCGAAGCTaGCTCTTCCCCATTTCCTTA | + |
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Preference number: 4 (lower is better) Translates to: KFCHLAGFWDCGDGGGSWTRGRS*LFPISL Trigger: TAAGGAAATGGGGAAGAGGCAGCTTCGCCCTCTGGT...CCAACTCCCTCCACCATCTCCACAGTCCCAAAACCCTGCCAAATGGCAGAACTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000208960.2 |
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| CDS-3UTR CCA 90 bp | AAGTTCTGCCATTTGGCAGGGTTTTGGGACTGTGGAGATGGTGGAGGGAGTTGGAGTGCCTGGTGTGGCTaGATGTCAGCAGTTCCTCAT | + |
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Preference number: 4 (lower is better) Translates to: KFCHLAGFWDCGDGGGSWSAWCG*MSAVPH Trigger: ATGAGGAACTGCTGACATCCAGCCACACCAGGCACT...CCAACTCCCTCCACCATCTCCACAGTCCCAAAACCCTGCCAAATGGCAGAACTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000012847.3 ENSMUST00000207979.2 |
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| CDS-3UTR GCA 90 bp | AGGTGGACCAGAGCCACAACCACTAACCCAAAGAGAACCTGCAGACATCAGGAGGTCATCTCTGAACTCTaGACAGTCTTCCTCTCCCAG | + |
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Preference number: 4 (lower is better) Translates to: RWTRATTTNPKRTCRHQEVISEL*TVFLSQ Trigger: CTGGGAGAGGAAGACTGTGCAGAGTTCAGAGATGAC...CTCCTGATGTCTGCAGGTTCTCTTTGGGTTAGTGGTTGTGGCTCTGGTCCACCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000012847.3 ENSMUST00000208960.2 |
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| CDS-3UTR TCA 90 bp | GAAAGGAAGACAGAGGAGATGAAAGGAACCCATTTAAGGACACCTCATGTCTGTGGAAGCCAAAGCCTTTaGTGGAGTGCCTGGTGTGGC | + |
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Preference number: 4 (lower is better) Translates to: ERKTEEMKGTHLRTPHVCGSQSL*WSAWCG Trigger: GCCACACCAGGCACTCCATCAAAGGCTTTGGCTTCC...ACAGACATGAGGTGTCCTTAAATGGGTTCCTTTCATCTCCTCTGTCTTCCTTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000012847.3 |
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| CDS-3UTR CCA 90 bp | GTTCTGCCATTTGGCAGGGTTTTGGGACTGTGGAGATGGTGGAGGGAGTTGGCCAATCCAGAATTTGTTTaGAAGCCAAAGCCTTTGATG | + |
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Preference number: 4 (lower is better) Translates to: VLPFGRVLGLWRWWRELANPEFV*KPKPLM Trigger: CATCAAAGGCTTTGGCTTCCAAACAAATTCTGGATT...GGCCAACTCCCTCCACCATCTCCACAGTCCCAAAACCCTGCCAAATGGCAGAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000012847.3 ENSMUST00000207979.2 |
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| CDS-3UTR CCA 90 bp | AGAGCCACAACCACTAACCCAAAGAGAACCTGCAGACATCAGGAGACTATACATCATTGTGGCAGGCAGTaGCAGAATCATTCCAGGACT | + |
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Preference number: 4 (lower is better) Translates to: RATTTNPKRTCRHQETIHHCGRQ*QNHSRT Trigger: AGTCCTGGAATGATTCTGCCACTGCCTGCCACAATG...ATGTATAGTCTCCTGATGTCTGCAGGTTCTCTTTGGGTTAGTGGTTGTGGCTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000012847.3 ENSMUST00000208960.2 |
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| CDS-3UTR CCA 90 bp | AGGTGGACCAGAGCCACAACCACTAACCCAAAGAGAACCTGCAGACATCAGGAGTTTCTTCCTGAGAACTaGGTATTTTGTAGACCAGAG | + |
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Preference number: 4 (lower is better) Translates to: RWTRATTTNPKRTCRHQEFLPEN*VFCRPE Trigger: CTCTGGTCTACAAAATACCCAGTTCTCAGGAAGAAA...CTCCTGATGTCTGCAGGTTCTCTTTGGGTTAGTGGTTGTGGCTCTGGTCCACCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000208960.2 |
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| CDS-3UTR GCA 90 bp | TGCAGGAGACAAGCTACCTGCCAGAATAAAGTCTTACAGATCTTGTCAAGGTTATCCAGAGGGCGAAGCTaGCTCTTCCCCATTTCCTTA | + |
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Preference number: 4 (lower is better) Translates to: CRRQATCQNKVLQILSRLSRGRS*LFPISL Trigger: TAAGGAAATGGGGAAGAGGCAGCTTCGCCCTCTGGA...TAACCTTGACAAGATCTGTAAGACTTTATTCTGGCAGGTAGCTTGTCTCCTGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000012847.3 |
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| CDS-3UTR GCA 90 bp | TCAGGATCAATTGCACATGGCAATATGTGGTCTCTACTCAGAAAGGAAGACAGAAAGCCTTTGATGGAGTaGCTGGTGTGGCTGGATGTC | + |
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Preference number: 4 (lower is better) Translates to: SGSIAHGNMWSLLRKEDRKPLME*LVWLDV Trigger: GACATCCAGCCACACCAGGCACTCCATCAAAGGCTT...TCTGTCTTCCTTTCTGAGTAGAGACCACATATTGCCATGTGCAATTGATCCTGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000012847.3 |
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| CDS-3UTR CCA 90 bp | ACCTGCCAGAATAAAGTCTTACAGATCTTGTCAAGGTTATCAATGGTCACAGACAGTGCCTGGTGTGGCTaGATGTCAGCAGTTCCTCAT | + |
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Preference number: 4 (lower is better) Translates to: TCQNKVLQILSRLSMVTDSAWCG*MSAVPH Trigger: ATGAGGAACTGCTGACATCCAGCCACACCAGGCACT...GTCTGTGACCATTGATAACCTTGACAAGATCTGTAAGACTTTATTCTGGCAGGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000012847.3 ENSMUST00000207979.2 |
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| CDS-3UTR TCA 90 bp | ATCAGAGAAGGGTCCCATAGAAAGGTGTGCAGGGTAGATGAATTAAAATTTAGTTCCAGCCGTCATCTCTaGACTCTGCACAGTCTTCCT | + |
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Preference number: 4 (lower is better) Translates to: IREGSHRKVCRVDELKFSSSRHL*TLHSLP Trigger: AGGAAGACTGTGCAGAGTTCAGAGATGACGGCTGGA...ACTAAATTTTAATTCATCTACCCTGCACACCTTTCTATGGGACCCTTCTCTGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000012847.3 |
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| CDS-3UTR GCA 90 bp | AGAATAAAGTCTTACAGATCTTGTCAAGGTTATCAATGGTCACAGACAAGTAGATCCAGAGGGCGAAGCTaGCTCTTCCCCATTTCCTTA | + |
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Preference number: 4 (lower is better) Translates to: RIKSYRSCQGYQWSQTSRSRGRS*LFPISL Trigger: TAAGGAAATGGGGAAGAGGCAGCTTCGCCCTCTGGA...TCTACTTGTCTGTGACCATTGATAACCTTGACAAGATCTGTAAGACTTTATTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000012847.3 ENSMUST00000207979.2 |
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| CDS-3UTR CCA 90 bp | TGTCTGTTTACTTCATTAAATGTCAAAGGTGGACCAGAGCCACAACCACTAACCAATCCAGAATTTGTTTaGAAGCCAAAGCCTTTGATG | + |
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Preference number: 4 (lower is better) Translates to: CLFTSLNVKGGPEPQPLTNPEFV*KPKPLM Trigger: CATCAAAGGCTTTGGCTTCCAAACAAATTCTGGATT...GGTTAGTGGTTGTGGCTCTGGTCCACCTTTGACATTTAATGAAGTAAACAGACA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000012847.3 |
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| CDS-3UTR CAA 90 bp | GTTCTGCCATTTGGCAGGGTTTTGGGACTGTGGAGATGGTGGAGGGAGTTGGCCCTTGATGACCACAAGTaGAGCCCCCACATTGTGGCA | + |
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Preference number: 5 (lower is better) Translates to: VLPFGRVLGLWRWWRELALDDHK*SPHIVA Trigger: TGCCACAATGTGGGGGCTCAACTTGTGGTCATCAAG...GGCCAACTCCCTCCACCATCTCCACAGTCCCAAAACCCTGCCAAATGGCAGAAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000012847.3 ENSMUST00000207979.2 ENSMUST00000208960.2 |
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| CDS CCA 90 bp | CCAGAATTTGTTTGGAAGCCAAAGCCTTTGATGGAGTGCCTGGTGTaGCTGGATGTCAGCAGTTCCTCATCCAGAGGGCGAAGCTGCCTC | + |
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Preference number: 5 (lower is better) Translates to: PEFVWKPKPLMECLV*LDVSSSSSRGRSCL Trigger: GAGGCAGCTTCGCCCTCTGGATGAGGAACTGCTGACATCCAGCCACACCAGGCACTCCATCAAAGGCTTTGGCTTCCAAACAAATTCTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000012847.3 ENSMUST00000207979.2 |
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| CDS-3UTR CAA 90 bp | GGTAAAGTTCTGCCATTTGGCAGGGTTTTGGGACTGTGGAGATGGTGGAGGGAGGAAGTAACAGCTTCCTaGGAAGTGCGTCCAGTCCCA | + |
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Preference number: 5 (lower is better) Translates to: GKVLPFGRVLGLWRWWREEVTAS*EVRPVP Trigger: TGGGACTGGACGCACTTCCAAGGAAGCTGTTACTTC...CTCCCTCCACCATCTCCACAGTCCCAAAACCCTGCCAAATGGCAGAACTTTACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000012847.3 ENSMUST00000207979.2 ENSMUST00000208960.2 |
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| CDS-3UTR CAA 90 bp | AAGTTCTGCCATTTGGCAGGGTTTTGGGACTGTGGAGATGGTGGAGGGAGTTGGCTTGATGACCACAAGTaGAGCCCCCACATTGTGGCA | + |
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Preference number: 5 (lower is better) Translates to: KFCHLAGFWDCGDGGGSWLDDHK*SPHIVA Trigger: TGCCACAATGTGGGGGCTCAACTTGTGGTCATCAAG...CCAACTCCCTCCACCATCTCCACAGTCCCAAAACCCTGCCAAATGGCAGAACTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000012847.3 ENSMUST00000207979.2 ENSMUST00000208960.2 |
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| CDS TCA 90 bp | ACAGAACAAACAGCTAGGAAGAGCACCTGCAGTGCCAAGGGGACTTaGCTGTGGACCAGGCACCCTGTGAAGCTACTGAATCCAGAATTT | + |
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Preference number: 5 (lower is better) Translates to: TEQTARKSTCSAKGT*LWTRHPVKLLNPEF Trigger: AAATTCTGGATTCAGTAGCTTCACAGGGTGCCTGGTCCACAGTCAAGTCCCCTTGGCACTGCAGGTGCTCTTCCTAGCTGTTTGTTCTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000012847.3 ENSMUST00000207979.2 |
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| CDS GCA 90 bp | CTACTGAATCCAGAATTTGTTTGGAAGCCAAAGCCTTTGATGGAGTaGCTGGTGTGGCTGGATGTCAGCAGTTCCTCATCCAGAGGGCGA | + |
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Preference number: 5 (lower is better) Translates to: LLNPEFVWKPKPLME*LVWLDVSSSSSRGR Trigger: TCGCCCTCTGGATGAGGAACTGCTGACATCCAGCCACACCAGGCACTCCATCAAAGGCTTTGGCTTCCAAACAAATTCTGGATTCAGTAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000012847.3 ENSMUST00000207979.2 |
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| CDS-3UTR CAA 90 bp | ATTAAATGTCAAAGGTGGACCAGAGCCACAACCACTAACCCAAAGAGAACCTGCGAAGTAACAGCTTCCTaGGAAGTGCGTCCAGTCCCA | + |
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Preference number: 5 (lower is better) Translates to: IKCQRWTRATTTNPKRTCEVTAS*EVRPVP Trigger: TGGGACTGGACGCACTTCCAAGGAAGCTGTTACTTC...GCAGGTTCTCTTTGGGTTAGTGGTTGTGGCTCTGGTCCACCTTTGACATTTAAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000012847.3 ENSMUST00000208960.2 |
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| CDS-3UTR CAA 90 bp | GTTCTGCCATTTGGCAGGGTTTTGGGACTGTGGAGATGGTGGAGGGAGTTGGCCCAGATCCAGAATTTCTaGTTAGTACATTTGGTGTCA | + |
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Preference number: 5 (lower is better) Translates to: VLPFGRVLGLWRWWRELAQIQNF*LVHLVS Trigger: TGACACCAAATGTACTAACAAGAAATTCTGGATCTG...GGCCAACTCCCTCCACCATCTCCACAGTCCCAAAACCCTGCCAAATGGCAGAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000012847.3 ENSMUST00000207979.2 ENSMUST00000208960.2 |
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| CDS GCA 90 bp | CTTGTTAGTACATTTGGTGTCATTCCAGCCGTCATCTCTGAACTCTaGACAGTCTTCCTCTCCCAGGTTGTTAGGTTCTCCTTTACTCCA | + |
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Preference number: 5 (lower is better) Translates to: LVSTFGVIPAVISEL*TVFLSQVVRFSFTP Trigger: TGGAGTAAAGGAGAACCTAACAACCTGGGAGAGGAAGACTGTGCAGAGTTCAGAGATGACGGCTGGAATGACACCAAATGTACTAACAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000012847.3 ENSMUST00000207979.2 ENSMUST00000208960.2 |
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| CDS-3UTR CAA 90 bp | AAAGTTCTGCCATTTGGCAGGGTTTTGGGACTGTGGAGATGGTGGAGGGAGTTGGAATCCAGAATTTGTTaGGAAGCCAAAGCCTTTGAT | + |
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Preference number: 5 (lower is better) Translates to: KVLPFGRVLGLWRWWRELESRIC*EAKAFD Trigger: ATCAAAGGCTTTGGCTTCCAAACAAATTCTGGATTC...CAACTCCCTCCACCATCTCCACAGTCCCAAAACCCTGCCAAATGGCAGAACTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000012847.3 ENSMUST00000207979.2 |
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| CDS-3UTR CAA 90 bp | CCACAACCACTAACCCAAAGAGAACCTGCAGACATCAGGAGACTATACATTAATGAAGTAACAGCTTCCTaGGAAGTGCGTCCAGTCCCA | + |
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Preference number: 5 (lower is better) Translates to: PQPLTQREPADIRRLYINEVTAS*EVRPVP Trigger: TGGGACTGGACGCACTTCCAAGGAAGCTGTTACTTC...ATTAATGTATAGTCTCCTGATGTCTGCAGGTTCTCTTTGGGTTAGTGGTTGTGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000012847.3 ENSMUST00000208960.2 |
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| CDS-3UTR CAA 90 bp | AAGTTCTGCCATTTGGCAGGGTTTTGGGACTGTGGAGATGGTGGAGGGAGTTGGCAGATCCAGAATTTCTaGTTAGTACATTTGGTGTCA | + |
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Preference number: 5 (lower is better) Translates to: KFCHLAGFWDCGDGGGSWQIQNF*LVHLVS Trigger: TGACACCAAATGTACTAACAAGAAATTCTGGATCTG...CCAACTCCCTCCACCATCTCCACAGTCCCAAAACCCTGCCAAATGGCAGAACTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000012847.3 ENSMUST00000207979.2 ENSMUST00000208960.2 |
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| CDS-3UTR CAA 90 bp | AAGTTCTGCCATTTGGCAGGGTTTTGGGACTGTGGAGATGGTGGAGGGAGTTGGGAAGTTGAAAGCTTTTaGCAGATCCAGAATTTCTTG | + |
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Preference number: 5 (lower is better) Translates to: KFCHLAGFWDCGDGGGSWEVESF*QIQNFL Trigger: CAAGAAATTCTGGATCTGCAAAAAGCTTTCAACTTC...CCAACTCCCTCCACCATCTCCACAGTCCCAAAACCCTGCCAAATGGCAGAACTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000012847.3 ENSMUST00000207979.2 ENSMUST00000208960.2 |
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| CDS-3UTR CAA 90 bp | GGTAAAGTTCTGCCATTTGGCAGGGTTTTGGGACTGTGGAGATGGTGGAGGGAGGAAGTTGAAAGCTTTTaGCAGATCCAGAATTTCTTG | + |
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Preference number: 5 (lower is better) Translates to: GKVLPFGRVLGLWRWWREEVESF*QIQNFL Trigger: CAAGAAATTCTGGATCTGCAAAAAGCTTTCAACTTC...CTCCCTCCACCATCTCCACAGTCCCAAAACCCTGCCAAATGGCAGAACTTTACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000012847.3 ENSMUST00000207979.2 ENSMUST00000208960.2 |
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| CDS-3UTR CAA 90 bp | AGGAGACAAGCTACCTGCCAGAATAAAGTCTTACAGATCTTGTCAAGGTTATCACTTGATGACCACAAGTaGAGCCCCCACATTGTGGCA | + |
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Preference number: 5 (lower is better) Translates to: RRQATCQNKVLQILSRLSLDDHK*SPHIVA Trigger: TGCCACAATGTGGGGGCTCAACTTGTGGTCATCAAG...TGATAACCTTGACAAGATCTGTAAGACTTTATTCTGGCAGGTAGCTTGTCTCCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000012847.3 ENSMUST00000208960.2 |
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| CDS-3UTR CAA 90 bp | AGGAGACAAACTGGACCTAGGAGCAATGCAGGAGACAAGCTACCTGCCAGAATACAGATCCAGAATTTCTaGTTAGTACATTTGGTGTCA | + |
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Preference number: 5 (lower is better) Translates to: RRQTGPRSNAGDKLPARIQIQNF*LVHLVS Trigger: TGACACCAAATGTACTAACAAGAAATTCTGGATCTG...TATTCTGGCAGGTAGCTTGTCTCCTGCATTGCTCCTAGGTCCAGTTTGTCTCCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000012847.3 ENSMUST00000208960.2 |
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| CDS-3UTR CAA 90 bp | GAGCCACAACCACTAACCCAAAGAGAACCTGCAGACATCAGGAGACTATACATTGAATCCAGAATTTGTTaGGAAGCCAAAGCCTTTGAT | + |
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Preference number: 5 (lower is better) Translates to: EPQPLTQREPADIRRLYIESRIC*EAKAFD Trigger: ATCAAAGGCTTTGGCTTCCAAACAAATTCTGGATTC...AATGTATAGTCTCCTGATGTCTGCAGGTTCTCTTTGGGTTAGTGGTTGTGGCTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000012847.3 |
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| CDS-3UTR CAA 90 bp | AGGAGACAAGCTACCTGCCAGAATAAAGTCTTACAGATCTTGTCAAGGTTATCAGAAGTTGAAAGCTTTTaGCAGATCCAGAATTTCTTG | + |
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Preference number: 5 (lower is better) Translates to: RRQATCQNKVLQILSRLSEVESF*QIQNFL Trigger: CAAGAAATTCTGGATCTGCAAAAAGCTTTCAACTTC...TGATAACCTTGACAAGATCTGTAAGACTTTATTCTGGCAGGTAGCTTGTCTCCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000012847.3 ENSMUST00000208960.2 |
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| CDS CAA 90 bp | ACTGTGGACCAGGCACCCTGTGAAGCTACTGAATCCAGAATTTGTTaGGAAGCCAAAGCCTTTGATGGAGTGCCTGGTGTGGCTGGATGT | + |
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Preference number: 6 (lower is better) Translates to: TVDQAPCEATESRIC*EAKAFDGVPGVAGC Trigger: ACATCCAGCCACACCAGGCACTCCATCAAAGGCTTTGGCTTCCAAACAAATTCTGGATTCAGTAGCTTCACAGGGTGCCTGGTCCACAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000012847.3 ENSMUST00000207979.2 |
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| CDS CAA 90 bp | CCTGTGAAGCTACTGAATCCAGAATTTGTTTGGAAGCCAAAGCCTTaGATGGAGTGCCTGGTGTGGCTGGATGTCAGCAGTTCCTCATCC | + |
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Preference number: 6 (lower is better) Translates to: PVKLLNPEFVWKPKP*MECLVWLDVSSSSS Trigger: GGATGAGGAACTGCTGACATCCAGCCACACCAGGCACTCCATCAAAGGCTTTGGCTTCCAAACAAATTCTGGATTCAGTAGCTTCACAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000012847.3 ENSMUST00000207979.2 |
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| CDS TCA 72 bp | AAGTTCTGCTCTTCATCACTCTTGATGACCACAAGTTaGGCCCCCACATTGTGGCAGGCAGTGGCAGAATCA | + |
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Preference number: 6 (lower is better) Translates to: KFCSSSLLMTTS*APTLWQAVAES Trigger: TGATTCTGCCACTGCCTGCCACAATGTGGGGGCTCAACTTGTGGTCATCAAGAGTGATGAAGAGCAGAACTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000012847.3 ENSMUST00000207979.2 ENSMUST00000208960.2 |
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| CDS GCA 72 bp | ACATTTGGTGTCATTCCAGCCGTCATCTCTGAACTCTaGACAGTCTTCCTCTCCCAGGTTGTTAGGTTCTCC | + |
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Preference number: 6 (lower is better) Translates to: TFGVIPAVISEL*TVFLSQVVRFS Trigger: GGAGAACCTAACAACCTGGGAGAGGAAGACTGTGCAGAGTTCAGAGATGACGGCTGGAATGACACCAAATGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000012847.3 ENSMUST00000207979.2 ENSMUST00000208960.2 |
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| CDS CCA 72 bp | AGGCACCCTGTGAAGCTACTGAATCCAGAATTTGTTTaGAAGCCAAAGCCTTTGATGGAGTGCCTGGTGTGG | + |
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Preference number: 6 (lower is better) Translates to: RHPVKLLNPEFV*KPKPLMECLVW Trigger: CCACACCAGGCACTCCATCAAAGGCTTTGGCTTCCAAACAAATTCTGGATTCAGTAGCTTCACAGGGTGCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000012847.3 ENSMUST00000207979.2 |
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| CDS CAA 72 bp | CAGGCACCCTGTGAAGCTACTGAATCCAGAATTTGTTaGGAAGCCAAAGCCTTTGATGGAGTGCCTGGTGTG | + |
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Preference number: 6 (lower is better) Translates to: QAPCEATESRIC*EAKAFDGVPGV Trigger: CACACCAGGCACTCCATCAAAGGCTTTGGCTTCCAAACAAATTCTGGATTCAGTAGCTTCACAGGGTGCCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000012847.3 ENSMUST00000207979.2 |
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| CDS CAA 72 bp | AAAGTTCTGCTCTTCATCACTCTTGATGACCACAAGTaGAGCCCCCACATTGTGGCAGGCAGTGGCAGAATC | + |
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Preference number: 6 (lower is better) Translates to: KVLLFITLDDHK*SPHIVAGSGRI Trigger: GATTCTGCCACTGCCTGCCACAATGTGGGGGCTCAACTTGTGGTCATCAAGAGTGATGAAGAGCAGAACTTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000012847.3 ENSMUST00000207979.2 ENSMUST00000208960.2 |
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| CDS CAA 90 bp | GGAGCGGCACAGTCGATCTACGCCAGCCTTCAACTGGGTCAGTTCTaGGTAGACATTCATCTGATTGTTTTCTTCCTGAGAACTGGGTAT | + |
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Preference number: 6 (lower is better) Translates to: GAAQSIYASLQLGQF*VDIHLIVFFLRTGY Trigger: ATACCCAGTTCTCAGGAAGAAAACAATCAGATGAATGTCTACCAAGAACTGACCCAGTTGAAGGCTGGCGTAGATCGACTGTGCCGCTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000012847.3 ENSMUST00000208960.2 |
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| CDS CAA 72 bp | CTACTGAATCCAGAATTTGTTTGGAAGCCAAAGCCTTaGATGGAGTGCCTGGTGTGGCTGGATGTCAGCAGT | + |
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Preference number: 6 (lower is better) Translates to: LLNPEFVWKPKP*MECLVWLDVSS Trigger: ACTGCTGACATCCAGCCACACCAGGCACTCCATCAAAGGCTTTGGCTTCCAAACAAATTCTGGATTCAGTAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000012847.3 ENSMUST00000207979.2 |
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| CDS CAA 90 bp | GAAGTTGAAAGCTTTTTGCAGATCCAGAATTTCTTGTTAGTACATTaGGTGTCATTCCAGCCGTCATCTCTGAACTCTGCACAGTCTTCC | + |
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Preference number: 6 (lower is better) Translates to: EVESFLQIQNFLLVH*VSFQPSSLNSAQSS Trigger: GGAAGACTGTGCAGAGTTCAGAGATGACGGCTGGAATGACACCAAATGTACTAACAAGAAATTCTGGATCTGCAAAAAGCTTTCAACTTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000012847.3 ENSMUST00000207979.2 ENSMUST00000208960.2 |
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| CDS CAA 72 bp | AGCTTTTTGCAGATCCAGAATTTCTTGTTAGTACATTaGGTGTCATTCCAGCCGTCATCTCTGAACTCTGCA | + |
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Preference number: 6 (lower is better) Translates to: SFLQIQNFLLVH*VSFQPSSLNSA Trigger: TGCAGAGTTCAGAGATGACGGCTGGAATGACACCAAATGTACTAACAAGAAATTCTGGATCTGCAAAAAGCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000012847.3 ENSMUST00000207979.2 ENSMUST00000208960.2 |
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