Pregenerated sensors for CD200R4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000062082Ensembl transcript IDs: ENSMUST00000114626.4, ENSMUST00000176321.8, ENSMUST00000176819.8
Found 56 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GAGTGTCTAACAAACATGAAGACAGCAGGGACAGGTAAGCTGGATTaGAATGAGAAAGTTGATTGCAAATGGCTGTTTTGTTGTATTGTG | + |
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Preference number: 1 (lower is better) Translates to: ECLTNMKTAGTGKLD*NEKVDCKWLFCCIV Trigger: CACAATACAACAAAACAGCCATTTGCAATCAACTTTCTCATTGCAATCCAGCTTACCTGTCCCTGCTGTCTTCATGTTTGTTAGACACTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000114626.4 ENSMUST00000176321.8 ENSMUST00000176819.8 |
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| 3UTR-3UTR CCA 90 bp | CATCCCATTACCATCCTTTTAGCATGTAAAGTACTCCAAGTATTCCCACCTACACAGGGACAGGTAAGCTaGATTGCAATGAGAAAGTTG | + |
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Preference number: 2 (lower is better) Translates to: HPITILLACKVLQVFPPTQGQVS*IAMRKL Trigger: CAACTTTCTCATTGCAATCCAGCTTACCTGTCCCTG...TGTAGGTGGGAATACTTGGAGTACTTTACATGCTAAAAGGATGGTAATGGGATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000114626.4 ENSMUST00000176321.8 ENSMUST00000176819.8 |
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| 3UTR-3UTR CCA 90 bp | CTCCAAGTATTCCCACCTACATATATAGTTCAAAGACAGCTGCTCTTTGATAAGCAGGGACAGGTAAGCTaGATTGCAATGAGAAAGTTG | + |
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Preference number: 2 (lower is better) Translates to: LQVFPPTYIVQRQLLFDKQGQVS*IAMRKL Trigger: CAACTTTCTCATTGCAATCCAGCTTACCTGTCCCTG...CTTATCAAAGAGCAGCTGTCTTTGAACTATATATGTAGGTGGGAATACTTGGAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000114626.4 ENSMUST00000176321.8 ENSMUST00000176819.8 |
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| 3UTR-3UTR GCA 90 bp | CATCCCATTACCATCCTTTTAGCATGTAAAGTACTCCAAGTATTCCCACCTACATACTGTCATTACAAATaGTTCCTCTCTGTCTCTCTT | + |
|
Preference number: 2 (lower is better) Translates to: HPITILLACKVLQVFPPTYCHYK*FLSVSL Trigger: AAGAGAGACAGAGAGGAAGCATTTGTAATGACAGTA...TGTAGGTGGGAATACTTGGAGTACTTTACATGCTAAAAGGATGGTAATGGGATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000114626.4 ENSMUST00000176321.8 ENSMUST00000176819.8 |
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| 3UTR-3UTR CCA 90 bp | CATCCCATTACCATCCTTTTAGCATGTAAAGTACTCCAAGTATTCCCACCTACAGACATATCTCCCAACTaGTTAATTAAAAATGGAGAG | + |
|
Preference number: 2 (lower is better) Translates to: HPITILLACKVLQVFPPTDISPN*LIKNGE Trigger: CTCTCCATTTTTAATTAACCAGTTGGGAGATATGTC...TGTAGGTGGGAATACTTGGAGTACTTTACATGCTAAAAGGATGGTAATGGGATG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000114626.4 ENSMUST00000176321.8 ENSMUST00000176819.8 |
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| 3UTR-3UTR GCA 90 bp | CAATACATGCATTCCCAATATTTCCATCCAAAGAAAAATGGAGGGACAAGTAATACAGGTAAGCTGGATTaGAATGAGAAAGTTGATTGC | + |
|
Preference number: 2 (lower is better) Translates to: QYMHSQYFHPKKNGGTSNTGKLD*NEKVDC Trigger: GCAATCAACTTTCTCATTGCAATCCAGCTTACCTGT...ATTACTTGTCCCTCCATTTTTCTTTGGATGGAAATATTGGGAATGCATGTATTG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000114626.4 ENSMUST00000176321.8 ENSMUST00000176819.8 |
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| 3UTR-3UTR CCA 90 bp | GTACTCCAAGTATTCCCACCTACATATATAGTTCAAAGACAGCTGCTCTTTGATGACATATCTCCCAACTaGTTAATTAAAAATGGAGAG | + |
|
Preference number: 2 (lower is better) Translates to: VLQVFPPTYIVQRQLLFDDISPN*LIKNGE Trigger: CTCTCCATTTTTAATTAACCAGTTGGGAGATATGTC...ATCAAAGAGCAGCTGTCTTTGAACTATATATGTAGGTGGGAATACTTGGAGTAC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000114626.4 ENSMUST00000176321.8 ENSMUST00000176819.8 |
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| 3UTR-3UTR GCA 90 bp | CCACCTACATATATAGTTCAAAGACAGCTGCTCTTTGATAAGTACATCAGAATATACTGTCATTACAAATaGTTCCTCTCTGTCTCTCTT | + |
|
Preference number: 2 (lower is better) Translates to: PPTYIVQRQLLFDKYIRIYCHYK*FLSVSL Trigger: AAGAGAGACAGAGAGGAAGCATTTGTAATGACAGTA...TATTCTGATGTACTTATCAAAGAGCAGCTGTCTTTGAACTATATATGTAGGTGG 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000114626.4 ENSMUST00000176321.8 ENSMUST00000176819.8 |
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| 3UTR-3UTR GCA 90 bp | CAATACATGCATTCCCAATATTTCCATCCAAAGAAAAATGGAGGGACAAGTAATTACTGTCATTACAAATaGTTCCTCTCTGTCTCTCTT | + |
|
Preference number: 2 (lower is better) Translates to: QYMHSQYFHPKKNGGTSNYCHYK*FLSVSL Trigger: AAGAGAGACAGAGAGGAAGCATTTGTAATGACAGTA...ATTACTTGTCCCTCCATTTTTCTTTGGATGGAAATATTGGGAATGCATGTATTG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000114626.4 ENSMUST00000176321.8 ENSMUST00000176819.8 |
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| 3UTR-3UTR CAA 90 bp | GAGTGTCTAACAAACATGAAGACAGCAGGGACAGGTAAGCTGGATTGCAATGAGTTGCAAATGGCTGTTTaGTTGTATTGTGTCCTCAGA | + |
|
Preference number: 3 (lower is better) Translates to: ECLTNMKTAGTGKLDCNELQMAV*LYCVLR Trigger: TCTGAGGACACAATACAACAAAACAGCCATTTGCAA...CTCATTGCAATCCAGCTTACCTGTCCCTGCTGTCTTCATGTTTGTTAGACACTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000114626.4 ENSMUST00000176321.8 ENSMUST00000176819.8 |
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| 3UTR GCA 72 bp | GGGACAGGTAAGCTGGATTGCAATGAGAAAGTTGATTaGAAATGGCTGTTTTGTTGTATTGTGTCCTCAGAC | + |
|
Preference number: 3 (lower is better) Translates to: GTGKLDCNEKVD*KWLFCCIVSSD Trigger: GTCTGAGGACACAATACAACAAAACAGCCATTTGCAATCAACTTTCTCATTGCAATCCAGCTTACCTGTCCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000114626.4 ENSMUST00000176321.8 ENSMUST00000176819.8 |
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| 3UTR GCA 72 bp | ACAAACATGAAGACAGCAGGGACAGGTAAGCTGGATTaGAATGAGAAAGTTGATTGCAAATGGCTGTTTTGT | + |
|
Preference number: 3 (lower is better) Translates to: TNMKTAGTGKLD*NEKVDCKWLFC Trigger: ACAAAACAGCCATTTGCAATCAACTTTCTCATTGCAATCCAGCTTACCTGTCCCTGCTGTCTTCATGTTTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000114626.4 ENSMUST00000176321.8 ENSMUST00000176819.8 |
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| 3UTR-3UTR CAA 90 bp | CATCCCATTACCATCCTTTTAGCATGTAAAGTACTCCAAGTATTCCCACCTACATTGCAAATGGCTGTTTaGTTGTATTGTGTCCTCAGA | + |
|
Preference number: 3 (lower is better) Translates to: HPITILLACKVLQVFPPTLQMAV*LYCVLR Trigger: TCTGAGGACACAATACAACAAAACAGCCATTTGCAA...TGTAGGTGGGAATACTTGGAGTACTTTACATGCTAAAAGGATGGTAATGGGATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000114626.4 ENSMUST00000176321.8 ENSMUST00000176819.8 |
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| 3UTR TCA 72 bp | GAAAATGTAACCTCTTCTGGGTTAATAATTTTAAGATaGGTGTCTAACAAACATGAAGACAGCAGGGACAGG | + |
|
Preference number: 3 (lower is better) Translates to: ENVTSSGLIILR*VSNKHEDSRDR Trigger: CCTGTCCCTGCTGTCTTCATGTTTGTTAGACACTCATCTTAAAATTATTAACCCAGAAGAGGTTACATTTTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000114626.4 ENSMUST00000176321.8 ENSMUST00000176819.8 |
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| CDS-3UTR CCA 90 bp | GAGTGTCTAACAAACATGAAGACAGCAGGGACAGGTAAGCTGGATTGCAATGAGTTGTTCTGCTCCCAGTaGCACGTGCTCCTGACAGTC | + |
|
Preference number: 4 (lower is better) Translates to: ECLTNMKTAGTGKLDCNELFCSQ*HVLLTV Trigger: GACTGTCAGGAGCACGTGCCACTGGGAGCAGAACAA...CTCATTGCAATCCAGCTTACCTGTCCCTGCTGTCTTCATGTTTGTTAGACACTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000114626.4 ENSMUST00000176321.8 ENSMUST00000176819.8 |
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| CDS-3UTR GCA 90 bp | ACAAACATGAAGACAGCAGGGACAGGTAAGCTGGATTGCAATGAGAAAGTTGATTCTGTGCAGCAGGCTTaGCTGCCATTGCCTCACAGA | + |
|
Preference number: 4 (lower is better) Translates to: TNMKTAGTGKLDCNEKVDSVQQA*LPLPHR Trigger: TCTGTGAGGCAATGGCAGGCAAGCCTGCTGCACAGA...ATCAACTTTCTCATTGCAATCCAGCTTACCTGTCCCTGCTGTCTTCATGTTTGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000114626.4 ENSMUST00000176321.8 ENSMUST00000176819.8 |
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| CDS-3UTR CCA 90 bp | ACAAACATGAAGACAGCAGGGACAGGTAAGCTGGATTGCAATGAGAAAGTTGATTTGTTCTGCTCCCAGTaGCACGTGCTCCTGACAGTC | + |
|
Preference number: 4 (lower is better) Translates to: TNMKTAGTGKLDCNEKVDLFCSQ*HVLLTV Trigger: GACTGTCAGGAGCACGTGCCACTGGGAGCAGAACAA...ATCAACTTTCTCATTGCAATCCAGCTTACCTGTCCCTGCTGTCTTCATGTTTGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000114626.4 ENSMUST00000176321.8 ENSMUST00000176819.8 |
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| CDS-3UTR TCA 90 bp | CATCCCATTACCATCCTTTTAGCATGTAAAGTACTCCAAGTATTCCCACCTACAGGAGGGCCACTGCACTaGTCTGAAGTTCAGGACTGT | + |
|
Preference number: 4 (lower is better) Translates to: HPITILLACKVLQVFPPTGGPLH*SEVQDC Trigger: ACAGTCCTGAACTTCAGATCAGTGCAGTGGCCCTCC...TGTAGGTGGGAATACTTGGAGTACTTTACATGCTAAAAGGATGGTAATGGGATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000114626.4 ENSMUST00000176321.8 ENSMUST00000176819.8 |
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| CDS-3UTR GCA 90 bp | GAGTGTCTAACAAACATGAAGACAGCAGGGACAGGTAAGCTGGATTGCAATGAGCATTGCCTCACAGACTaGAGTTCTGTTTTTCCCTGG | + |
|
Preference number: 4 (lower is better) Translates to: ECLTNMKTAGTGKLDCNEHCLTD*SSVFPW Trigger: CCAGGGAAAAACAGAACTGCAGTCTGTGAGGCAATG...CTCATTGCAATCCAGCTTACCTGTCCCTGCTGTCTTCATGTTTGTTAGACACTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000114626.4 ENSMUST00000176321.8 ENSMUST00000176819.8 |
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| CDS-3UTR GCA 90 bp | CATCCCATTACCATCCTTTTAGCATGTAAAGTACTCCAAGTATTCCCACCTACATCTGTGCAGCAGGCTTaGCTGCCATTGCCTCACAGA | + |
|
Preference number: 4 (lower is better) Translates to: HPITILLACKVLQVFPPTSVQQA*LPLPHR Trigger: TCTGTGAGGCAATGGCAGGCAAGCCTGCTGCACAGA...TGTAGGTGGGAATACTTGGAGTACTTTACATGCTAAAAGGATGGTAATGGGATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000114626.4 ENSMUST00000176321.8 ENSMUST00000176819.8 |
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| CDS-3UTR GCA 90 bp | ACAAACATGAAGACAGCAGGGACAGGTAAGCTGGATTGCAATGAGAAAGTTGATACAGACACATTGTTCTaGTCCCAGTGGCACGTGCTC | + |
|
Preference number: 4 (lower is better) Translates to: TNMKTAGTGKLDCNEKVDTDTLF*SQWHVL Trigger: GAGCACGTGCCACTGGGAGCAGAACAATGTGTCTGT...ATCAACTTTCTCATTGCAATCCAGCTTACCTGTCCCTGCTGTCTTCATGTTTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000114626.4 ENSMUST00000176321.8 ENSMUST00000176819.8 |
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| CDS-3UTR TCA 90 bp | GTACTCCAAGTATTCCCACCTACATATATAGTTCAAAGACAGCTGCTCTTTGATGGAGGGCCACTGCACTaGTCTGAAGTTCAGGACTGT | + |
|
Preference number: 4 (lower is better) Translates to: VLQVFPPTYIVQRQLLFDGGPLH*SEVQDC Trigger: ACAGTCCTGAACTTCAGATCAGTGCAGTGGCCCTCC...ATCAAAGAGCAGCTGTCTTTGAACTATATATGTAGGTGGGAATACTTGGAGTAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000114626.4 ENSMUST00000176321.8 ENSMUST00000176819.8 |
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| CDS-3UTR GCA 90 bp | ACAAACATGAAGACAGCAGGGACAGGTAAGCTGGATTGCAATGAGAAAGTTGATGGTTGTATGCTATTGTaGAGGAAGGCAGGTGTCTGT | + |
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Preference number: 4 (lower is better) Translates to: TNMKTAGTGKLDCNEKVDGCMLL*RKAGVC Trigger: ACAGACACCTGCCTTCCTGCACAATAGCATACAACC...ATCAACTTTCTCATTGCAATCCAGCTTACCTGTCCCTGCTGTCTTCATGTTTGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000114626.4 ENSMUST00000176321.8 ENSMUST00000176819.8 |
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| CDS-3UTR CCA 90 bp | GAGTGTCTAACAAACATGAAGACAGCAGGGACAGGTAAGCTGGATTGCAATGAGCTTGACTCAGTTCTATaGACAGAGACTGATTACCAG | + |
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Preference number: 4 (lower is better) Translates to: ECLTNMKTAGTGKLDCNELDSVL*TETDYQ Trigger: CTGGTAATCAGTCTCTGTCCATAGAACTGAGTCAAG...CTCATTGCAATCCAGCTTACCTGTCCCTGCTGTCTTCATGTTTGTTAGACACTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000114626.4 ENSMUST00000176321.8 ENSMUST00000176819.8 |
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| CDS-3UTR TCA 90 bp | CAATACATGCATTCCCAATATTTCCATCCAAAGAAAAATGGAGGGACAAGTAATGGAGGGCCACTGCACTaGTCTGAAGTTCAGGACTGT | + |
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Preference number: 4 (lower is better) Translates to: QYMHSQYFHPKKNGGTSNGGPLH*SEVQDC Trigger: ACAGTCCTGAACTTCAGATCAGTGCAGTGGCCCTCC...ATTACTTGTCCCTCCATTTTTCTTTGGATGGAAATATTGGGAATGCATGTATTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000114626.4 ENSMUST00000176321.8 ENSMUST00000176819.8 |
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| CDS-3UTR GCA 90 bp | CCACCTACATATATAGTTCAAAGACAGCTGCTCTTTGATAAGTACATCAGAATATCTGTGCAGCAGGCTTaGCTGCCATTGCCTCACAGA | + |
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Preference number: 4 (lower is better) Translates to: PPTYIVQRQLLFDKYIRISVQQA*LPLPHR Trigger: TCTGTGAGGCAATGGCAGGCAAGCCTGCTGCACAGA...TATTCTGATGTACTTATCAAAGAGCAGCTGTCTTTGAACTATATATGTAGGTGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000114626.4 ENSMUST00000176321.8 ENSMUST00000176819.8 |
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| CDS-3UTR CCA 90 bp | CAATACATGCATTCCCAATATTTCCATCCAAAGAAAAATGGAGGGACAAGTAATTTGTTCTGCTCCCAGTaGCACGTGCTCCTGACAGTC | + |
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Preference number: 4 (lower is better) Translates to: QYMHSQYFHPKKNGGTSNLFCSQ*HVLLTV Trigger: GACTGTCAGGAGCACGTGCCACTGGGAGCAGAACAA...ATTACTTGTCCCTCCATTTTTCTTTGGATGGAAATATTGGGAATGCATGTATTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000114626.4 ENSMUST00000176321.8 ENSMUST00000176819.8 |
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| CDS-3UTR CCA 90 bp | GGCTGTTTTGTTGTATTGTGTCCTCAGACTAATGGACTTCCAGAAATCTGGATATCCTGCCCAAGCAGCTaGTTTCATTGGTCTTTTTAT | + |
|
Preference number: 4 (lower is better) Translates to: GCFVVLCPQTNGLPEIWISCPSS*FHWSFY Trigger: ATAAAAAGACCAATGAAACCAGCTGCTTGGGCAGGA...TATCCAGATTTCTGGAAGTCCATTAGTCTGAGGACACAATACAACAAAACAGCC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000114626.4 ENSMUST00000176321.8 ENSMUST00000176819.8 |
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| CDS-3UTR CCA 90 bp | CATCCCATTACCATCCTTTTAGCATGTAAAGTACTCCAAGTATTCCCACCTACAAGTTCTGTTTTTCCCTaGAAAGTAGGTTACCTCAGG | + |
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Preference number: 4 (lower is better) Translates to: HPITILLACKVLQVFPPTSSVFP*KVGYLR Trigger: CCTGAGGTAACCTACTTTCCAGGGAAAAACAGAACT...TGTAGGTGGGAATACTTGGAGTACTTTACATGCTAAAAGGATGGTAATGGGATG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000114626.4 ENSMUST00000176321.8 ENSMUST00000176819.8 |
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| CDS-3UTR CCA 90 bp | CATCCCATTACCATCCTTTTAGCATGTAAAGTACTCCAAGTATTCCCACCTACACTTGACTCAGTTCTATaGACAGAGACTGATTACCAG | + |
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Preference number: 4 (lower is better) Translates to: HPITILLACKVLQVFPPTLDSVL*TETDYQ Trigger: CTGGTAATCAGTCTCTGTCCATAGAACTGAGTCAAG...TGTAGGTGGGAATACTTGGAGTACTTTACATGCTAAAAGGATGGTAATGGGATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000114626.4 ENSMUST00000176321.8 ENSMUST00000176819.8 |
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| CDS-3UTR GCA 90 bp | TTATCAATACATGCATTCCCAATATTTCCATCCAAAGAAAAATGGAGGGACAAGGGTTGTATGCTATTGTaGAGGAAGGCAGGTGTCTGT | + |
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Preference number: 4 (lower is better) Translates to: LSIHAFPIFPSKEKWRDKGCMLL*RKAGVC Trigger: ACAGACACCTGCCTTCCTGCACAATAGCATACAACC...CTTGTCCCTCCATTTTTCTTTGGATGGAAATATTGGGAATGCATGTATTGATAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000114626.4 ENSMUST00000176321.8 ENSMUST00000176819.8 |
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| CDS-3UTR GCA 90 bp | ATCAATACATGCATTCCCAATATTTCCATCCAAAGAAAAATGGAGGGACAAGTAGGTTGTATGCTATTGTaGAGGAAGGCAGGTGTCTGT | + |
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Preference number: 4 (lower is better) Translates to: INTCIPNISIQRKMEGQVGCMLL*RKAGVC Trigger: ACAGACACCTGCCTTCCTGCACAATAGCATACAACC...TACTTGTCCCTCCATTTTTCTTTGGATGGAAATATTGGGAATGCATGTATTGAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000114626.4 ENSMUST00000176321.8 ENSMUST00000176819.8 |
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| CDS-3UTR GCA 90 bp | ATCAATACATGCATTCCCAATATTTCCATCCAAAGAAAAATGGAGGGACAAGTACATTGCCTCACAGACTaGAGTTCTGTTTTTCCCTGG | + |
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Preference number: 4 (lower is better) Translates to: INTCIPNISIQRKMEGQVHCLTD*SSVFPW Trigger: CCAGGGAAAAACAGAACTGCAGTCTGTGAGGCAATG...TACTTGTCCCTCCATTTTTCTTTGGATGGAAATATTGGGAATGCATGTATTGAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000114626.4 ENSMUST00000176321.8 ENSMUST00000176819.8 |
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| CDS-3UTR CCA 90 bp | CTCCAAGTATTCCCACCTACATATATAGTTCAAAGACAGCTGCTCTTTGATAAGCTTGACTCAGTTCTATaGACAGAGACTGATTACCAG | + |
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Preference number: 4 (lower is better) Translates to: LQVFPPTYIVQRQLLFDKLDSVL*TETDYQ Trigger: CTGGTAATCAGTCTCTGTCCATAGAACTGAGTCAAG...CTTATCAAAGAGCAGCTGTCTTTGAACTATATATGTAGGTGGGAATACTTGGAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000114626.4 ENSMUST00000176321.8 ENSMUST00000176819.8 |
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| CDS-3UTR TCA 90 bp | ATCAATACATGCATTCCCAATATTTCCATCCAAAGAAAAATGGAGGGACAAGTAGTGGTCATTGTACCTTaGCTCAGTTCTATGGACAGA | + |
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Preference number: 4 (lower is better) Translates to: INTCIPNISIQRKMEGQVVVIVP*LSSMDR Trigger: TCTGTCCATAGAACTGAGTCAAGGTACAATGACCAC...TACTTGTCCCTCCATTTTTCTTTGGATGGAAATATTGGGAATGCATGTATTGAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000114626.4 ENSMUST00000176321.8 ENSMUST00000176819.8 |
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| CDS-3UTR TCA 90 bp | TTATCAATACATGCATTCCCAATATTTCCATCCAAAGAAAAATGGAGGGACAAGGTGGTCATTGTACCTTaGCTCAGTTCTATGGACAGA | + |
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Preference number: 4 (lower is better) Translates to: LSIHAFPIFPSKEKWRDKVVIVP*LSSMDR Trigger: TCTGTCCATAGAACTGAGTCAAGGTACAATGACCAC...CTTGTCCCTCCATTTTTCTTTGGATGGAAATATTGGGAATGCATGTATTGATAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000114626.4 ENSMUST00000176321.8 ENSMUST00000176819.8 |
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| CDS-3UTR CCA 90 bp | GTACTCCAAGTATTCCCACCTACATATATAGTTCAAAGACAGCTGCTCTTTGATTACTGCATTTATCAGTaGACTAGAAAAGCAGCAGAG | + |
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Preference number: 4 (lower is better) Translates to: VLQVFPPTYIVQRQLLFDYCIYQ*TRKAAE Trigger: CTCTGCTGCTTTTCTAGTCCACTGATAAATGCAGTA...ATCAAAGAGCAGCTGTCTTTGAACTATATATGTAGGTGGGAATACTTGGAGTAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000114626.4 ENSMUST00000176321.8 ENSMUST00000176819.8 |
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| CDS-3UTR CCA 90 bp | CATCCCATTACCATCCTTTTAGCATGTAAAGTACTCCAAGTATTCCCACCTACAAGCAGCTGGTTTCATTaGTCTTTTTATCTAGGTTGT | + |
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Preference number: 4 (lower is better) Translates to: HPITILLACKVLQVFPPTSSWFH*SFYLGC Trigger: ACAACCTAGATAAAAAGACCAATGAAACCAGCTGCT...TGTAGGTGGGAATACTTGGAGTACTTTACATGCTAAAAGGATGGTAATGGGATG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000114626.4 ENSMUST00000176321.8 ENSMUST00000176819.8 |
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| 3UTR CAA 72 bp | ATGAGAAAGTTGATTGCAAATGGCTGTTTTGTTGTATaGTGTCCTCAGACTAATGGACTTCCAGAAATCTGG | + |
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Preference number: 4 (lower is better) Translates to: MRKLIANGCFVV*CPQTNGLPEIW Trigger: CCAGATTTCTGGAAGTCCATTAGTCTGAGGACACAATACAACAAAACAGCCATTTGCAATCAACTTTCTCAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000114626.4 ENSMUST00000176321.8 ENSMUST00000176819.8 |
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| CDS-3UTR CCA 90 bp | GTACTCCAAGTATTCCCACCTACATATATAGTTCAAAGACAGCTGCTCTTTGATAGCAGCTGGTTTCATTaGTCTTTTTATCTAGGTTGT | + |
|
Preference number: 4 (lower is better) Translates to: VLQVFPPTYIVQRQLLFDSSWFH*SFYLGC Trigger: ACAACCTAGATAAAAAGACCAATGAAACCAGCTGCT...ATCAAAGAGCAGCTGTCTTTGAACTATATATGTAGGTGGGAATACTTGGAGTAC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000114626.4 ENSMUST00000176321.8 ENSMUST00000176819.8 |
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| CDS-3UTR CCA 90 bp | TTATCAATACATGCATTCCCAATATTTCCATCCAAAGAAAAATGGAGGGACAAGTCCTGCCCAAGCAGCTaGTTTCATTGGTCTTTTTAT | + |
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Preference number: 4 (lower is better) Translates to: LSIHAFPIFPSKEKWRDKSCPSS*FHWSFY Trigger: ATAAAAAGACCAATGAAACCAGCTGCTTGGGCAGGA...CTTGTCCCTCCATTTTTCTTTGGATGGAAATATTGGGAATGCATGTATTGATAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000114626.4 ENSMUST00000176321.8 ENSMUST00000176819.8 |
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| CDS-3UTR CCA 90 bp | ATCAATACATGCATTCCCAATATTTCCATCCAAAGAAAAATGGAGGGACAAGTATCCTGCCCAAGCAGCTaGTTTCATTGGTCTTTTTAT | + |
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Preference number: 4 (lower is better) Translates to: INTCIPNISIQRKMEGQVSCPSS*FHWSFY Trigger: ATAAAAAGACCAATGAAACCAGCTGCTTGGGCAGGA...TACTTGTCCCTCCATTTTTCTTTGGATGGAAATATTGGGAATGCATGTATTGAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000114626.4 ENSMUST00000176321.8 ENSMUST00000176819.8 |
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| CDS-3UTR CCA 90 bp | CAATACATGCATTCCCAATATTTCCATCCAAAGAAAAATGGAGGGACAAGTAATAGTTCTGTTTTTCCCTaGAAAGTAGGTTACCTCAGG | + |
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Preference number: 4 (lower is better) Translates to: QYMHSQYFHPKKNGGTSNSSVFP*KVGYLR Trigger: CCTGAGGTAACCTACTTTCCAGGGAAAAACAGAACT...ATTACTTGTCCCTCCATTTTTCTTTGGATGGAAATATTGGGAATGCATGTATTG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000114626.4 ENSMUST00000176321.8 ENSMUST00000176819.8 |
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| CDS-3UTR CCA 90 bp | ATCAATACATGCATTCCCAATATTTCCATCCAAAGAAAAATGGAGGGACAAGTATACTGCATTTATCAGTaGACTAGAAAAGCAGCAGAG | + |
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Preference number: 4 (lower is better) Translates to: INTCIPNISIQRKMEGQVYCIYQ*TRKAAE Trigger: CTCTGCTGCTTTTCTAGTCCACTGATAAATGCAGTA...TACTTGTCCCTCCATTTTTCTTTGGATGGAAATATTGGGAATGCATGTATTGAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000114626.4 ENSMUST00000176321.8 ENSMUST00000176819.8 |
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| CDS-3UTR CCA 90 bp | TTATCAATACATGCATTCCCAATATTTCCATCCAAAGAAAAATGGAGGGACAAGTACTGCATTTATCAGTaGACTAGAAAAGCAGCAGAG | + |
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Preference number: 4 (lower is better) Translates to: LSIHAFPIFPSKEKWRDKYCIYQ*TRKAAE Trigger: CTCTGCTGCTTTTCTAGTCCACTGATAAATGCAGTA...CTTGTCCCTCCATTTTTCTTTGGATGGAAATATTGGGAATGCATGTATTGATAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000114626.4 ENSMUST00000176321.8 ENSMUST00000176819.8 |
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| CDS-3UTR CAA 90 bp | GAGTGTCTAACAAACATGAAGACAGCAGGGACAGGTAAGCTGGATTGCAATGAGCCAGACACAAAAATATaGATGAAGATCAGCAAAGTC | + |
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Preference number: 5 (lower is better) Translates to: ECLTNMKTAGTGKLDCNEPDTKI*MKISKV Trigger: GACTTTGCTGATCTTCATCAATATTTTTGTGTCTGG...CTCATTGCAATCCAGCTTACCTGTCCCTGCTGTCTTCATGTTTGTTAGACACTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000114626.4 ENSMUST00000176819.8 |
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| CDS-3UTR CAA 90 bp | CATCCCATTACCATCCTTTTAGCATGTAAAGTACTCCAAGTATTCCCACCTACACCAGACACAAAAATATaGATGAAGATCAGCAAAGTC | + |
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Preference number: 5 (lower is better) Translates to: HPITILLACKVLQVFPPTPDTKI*MKISKV Trigger: GACTTTGCTGATCTTCATCAATATTTTTGTGTCTGG...TGTAGGTGGGAATACTTGGAGTACTTTACATGCTAAAAGGATGGTAATGGGATG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000114626.4 ENSMUST00000176819.8 |
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| CDS-3UTR CAA 90 bp | CTCCAAGTATTCCCACCTACATATATAGTTCAAAGACAGCTGCTCTTTGATAAGGTCTTTTTATCTAGGTaGTATGCTATTGTGCAGGAA | + |
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Preference number: 5 (lower is better) Translates to: LQVFPPTYIVQRQLLFDKVFLSR*YAIVQE Trigger: TTCCTGCACAATAGCATACAACCTAGATAAAAAGAC...CTTATCAAAGAGCAGCTGTCTTTGAACTATATATGTAGGTGGGAATACTTGGAG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000114626.4 ENSMUST00000176321.8 ENSMUST00000176819.8 |
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| CDS-3UTR CAA 90 bp | ATCAATACATGCATTCCCAATATTTCCATCCAAAGAAAAATGGAGGGACAAGTAAAGCAGCTGGTTTCATaGGTCTTTTTATCTAGGTTG | + |
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Preference number: 5 (lower is better) Translates to: INTCIPNISIQRKMEGQVKQLVS*VFLSRL Trigger: CAACCTAGATAAAAAGACCAATGAAACCAGCTGCTT...TACTTGTCCCTCCATTTTTCTTTGGATGGAAATATTGGGAATGCATGTATTGAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000114626.4 ENSMUST00000176321.8 ENSMUST00000176819.8 |
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| CDS-3UTR CAA 90 bp | ATCAATACATGCATTCCCAATATTTCCATCCAAAGAAAAATGGAGGGACAAGTAGTCTTTTTATCTAGGTaGTATGCTATTGTGCAGGAA | + |
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Preference number: 5 (lower is better) Translates to: INTCIPNISIQRKMEGQVVFLSR*YAIVQE Trigger: TTCCTGCACAATAGCATACAACCTAGATAAAAAGAC...TACTTGTCCCTCCATTTTTCTTTGGATGGAAATATTGGGAATGCATGTATTGAT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000114626.4 ENSMUST00000176321.8 ENSMUST00000176819.8 |
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| CDS GCA 72 bp | AGTGACACAGTCCCCATCTGGAGTCCAAGAGATCTGTaGAGCAGGCTTGCCTGCCATTGCCTCACAGACTGC | + |
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Preference number: 6 (lower is better) Translates to: SDTVPIWSPRDL*SRLACHCLTDC Trigger: GCAGTCTGTGAGGCAATGGCAGGCAAGCCTGCTGCACAGATCTCTTGGACTCCAGATGGGGACTGTGTCACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000114626.4 ENSMUST00000176321.8 ENSMUST00000176819.8 |
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| CDS CAA 72 bp | TCCCAGTGGCACGTGCTCCTGACAGTCACAGTGCCATaGCTGTGTGACTCACTCTTAGTGACACAGTCCCCA | + |
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Preference number: 6 (lower is better) Translates to: SQWHVLLTVTVP*LCDSLLVTQSP Trigger: TGGGGACTGTGTCACTAAGAGTGAGTCACACAGCAATGGCACTGTGACTGTCAGGAGCACGTGCCACTGGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000114626.4 ENSMUST00000176321.8 ENSMUST00000176819.8 |
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| CDS CAA 90 bp | TTGTTCTGCTCCCAGTGGCACGTGCTCCTGACAGTCACAGTGCCATaGCTGTGTGACTCACTCTTAGTGACACAGTCCCCATCTGGAGTC | + |
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Preference number: 6 (lower is better) Translates to: LFCSQWHVLLTVTVP*LCDSLLVTQSPSGV Trigger: GACTCCAGATGGGGACTGTGTCACTAAGAGTGAGTCACACAGCAATGGCACTGTGACTGTCAGGAGCACGTGCCACTGGGAGCAGAACAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000114626.4 ENSMUST00000176321.8 ENSMUST00000176819.8 |
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| CDS TCA 72 bp | GCACGTGCTCCTGACAGTCACAGTGCCATTGCTGTGTaGCTCACTCTTAGTGACACAGTCCCCATCTGGAGT | + |
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Preference number: 6 (lower is better) Translates to: ARAPDSHSAIAV*LTLSDTVPIWS Trigger: ACTCCAGATGGGGACTGTGTCACTAAGAGTGAGTCACACAGCAATGGCACTGTGACTGTCAGGAGCACGTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000114626.4 ENSMUST00000176321.8 ENSMUST00000176819.8 |
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| CDS GCA 72 bp | CTGTGCAGCAGGCTTGCCTGCCATTGCCTCACAGACTaGAGTTCTGTTTTTCCCTGGAAAGTAGGTTACCTC | + |
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Preference number: 6 (lower is better) Translates to: LCSRLACHCLTD*SSVFPWKVGYL Trigger: GAGGTAACCTACTTTCCAGGGAAAAACAGAACTGCAGTCTGTGAGGCAATGGCAGGCAAGCCTGCTGCACAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000114626.4 ENSMUST00000176321.8 ENSMUST00000176819.8 |
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| CDS CAA 72 bp | TTCTCATCAGTACAACTTGACCCAGACACAAAAATATaGATGAAGATCAGCAAAGTCAAAGTCGGAATCCTC | + |
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Preference number: 6 (lower is better) Translates to: FSSVQLDPDTKI*MKISKVKVGIL Trigger: GAGGATTCCGACTTTGACTTTGCTGATCTTCATCAATATTTTTGTGTCTGGGTCAAGTTGTACTGATGAGAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000114626.4 ENSMUST00000176819.8 |
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