Pregenerated sensors for CD200R2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000090176Ensembl transcript IDs: ENSMUST00000102805.4
Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ACTAGGGAATCAAGCCTTTACTGGACCAAGGGTTTCTCCTTCCACTaGTGCCCAACAAGGCCATCCACTGCTACACAAGCAGCTGGAGCC | + |
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Preference number: 1 (lower is better) Translates to: TRESSLYWTKGFSFH*CPTRPSTATQAAGA Trigger: GGCTCCAGCTGCTTGTGTAGCAGTGGATGGCCTTGTTGGGCATCAGTGGAAGGAGAAACCCTTGGTCCAGTAAAGGCTTGATTCCCTAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102805.4 |
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| 3UTR CAA 90 bp | ATGGGATGGGTCCTTAGGTGGGGCAGTCTCTGGATGGCCTTTCTTTaGGTCTATGCTCCACAATTTGTCCCCATATTTCCTTTAGACAGG | + |
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Preference number: 2 (lower is better) Translates to: MGWVLRWGSLWMAFL*VYAPQFVPIFPLDR Trigger: CCTGTCTAAAGGAAATATGGGGACAAATTGTGGAGCATAGACCAAAAGAAAGGCCATCCAGAGACTGCCCCACCTAAGGACCCATCCCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102805.4 |
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| 3UTR-3UTR CCA 90 bp | AAGCCTTTACTGGACCAAGGGTTTCTCCTTCCACTGATGCCCAACAAGGCCATCAGTAGTGTCTGGGTTTaGTGTCTGTATATGGGATGG | + |
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Preference number: 2 (lower is better) Translates to: KPLLDQGFLLPLMPNKAISSVWV*CLYMGW Trigger: CCATCCCATATACAGACACCAAACCCAGACACTACT...GATGGCCTTGTTGGGCATCAGTGGAAGGAGAAACCCTTGGTCCAGTAAAGGCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102805.4 |
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| 3UTR-3UTR CCA 90 bp | GTTGGTAATTTAGTCCCTGGGAGCTCTGGGAGATCTGGTTGGTTGATATTGTTGGGGGCAGTCTCTGGATaGCCTTTCTTTTGGTCTATG | + |
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Preference number: 2 (lower is better) Translates to: VGNLVPGSSGRSGWLILLGAVSG*PFFWSM Trigger: CATAGACCAAAAGAAAGGCCATCCAGAGACTGCCCC...CAACAATATCAACCAACCAGATCTCCCAGAGCTCCCAGGGACTAAATTACCAAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102805.4 |
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| 3UTR-3UTR CCA 90 bp | CAAGCCTTTACTGGACCAAGGGTTTCTCCTTCCACTGATGCCCAACAAGGCCATGAGCTCTGGGAGATCTaGTTGGTTGATATTGTTGTT | + |
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Preference number: 2 (lower is better) Translates to: QAFTGPRVSPSTDAQQGHELWEI*LVDIVV Trigger: AACAACAATATCAACCAACCAGATCTCCCAGAGCTC...ATGGCCTTGTTGGGCATCAGTGGAAGGAGAAACCCTTGGTCCAGTAAAGGCTTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102805.4 |
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| 3UTR CAA 90 bp | TTCACCCTCTTCAGTCCTTTCTCTAACTCCTCCAATGGAGATTTTTaGCTCAGTCCAGTTGTTGGCTGCAAGCATCTACCTATGTATTTG | + |
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Preference number: 2 (lower is better) Translates to: FTLFSPFSNSSNGDF*LSPVVGCKHLPMYL Trigger: CAAATACATAGGTAGATGCTTGCAGCCAACAACTGGACTGAGCAAAAAATCTCCATTGGAGGAGTTAGAGAAAGGACTGAAGAGGGTGAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102805.4 |
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| 3UTR CCA 72 bp | CAAACGCTTCGCAGCATCTTCAGTAGTGTCTGGGTTTaGTGTCTGTATATGGGATGGGTCCTTAGGTGGGGC | + |
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Preference number: 3 (lower is better) Translates to: QTLRSIFSSVWV*CLYMGWVLRWG Trigger: GCCCCACCTAAGGACCCATCCCATATACAGACACCAAACCCAGACACTACTGAAGATGCTGCGAAGCGTTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102805.4 |
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| 3UTR CCA 72 bp | TTCAGTAGTGTCTGGGTTTGGTGTCTGTATATGGGATaGGTCCTTAGGTGGGGCAGTCTCTGGATGGCCTTT | + |
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Preference number: 3 (lower is better) Translates to: FSSVWVWCLYMG*VLRWGSLWMAF Trigger: AAAGGCCATCCAGAGACTGCCCCACCTAAGGACCCATCCCATATACAGACACCAAACCCAGACACTACTGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102805.4 |
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| 3UTR CCA 72 bp | TGGCTGCAAGCATCTACCTATGTATTTGTCAGGCTCTaGCTGAGCCTCTCAGGAGACAGCTATAACAGGCTC | + |
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Preference number: 3 (lower is better) Translates to: WLQASTYVFVRL*LSLSGDSYNRL Trigger: GAGCCTGTTATAGCTGTCTCCTGAGAGGCTCAGCCAGAGCCTGACAAATACATAGGTAGATGCTTGCAGCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102805.4 |
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| 3UTR TCA 72 bp | TGCAAGCATCTACCTATGTATTTGTCAGGCTCTGGCTaGGCCTCTCAGGAGACAGCTATAACAGGCTCCTGT | + |
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Preference number: 3 (lower is better) Translates to: CKHLPMYLSGSG*ASQETAITGSC Trigger: ACAGGAGCCTGTTATAGCTGTCTCCTGAGAGGCTCAGCCAGAGCCTGACAAATACATAGGTAGATGCTTGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102805.4 |
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| 3UTR CCA 72 bp | ATATGGGATGGGTCCTTAGGTGGGGCAGTCTCTGGATaGCCTTTCTTTTGGTCTATGCTCCACAATTTGTCC | + |
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Preference number: 3 (lower is better) Translates to: IWDGSLGGAVSG*PFFWSMLHNLS Trigger: GGACAAATTGTGGAGCATAGACCAAAAGAAAGGCCATCCAGAGACTGCCCCACCTAAGGACCCATCCCATAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102805.4 |
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| 3UTR-3UTR CAA 90 bp | GGAATCAAGCCTTTACTGGACCAAGGGTTTCTCCTTCCACTGATGCCCAACAAGTGGATGGCCTTTCTTTaGGTCTATGCTCCACAATTT | + |
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Preference number: 3 (lower is better) Translates to: GIKPLLDQGFLLPLMPNKWMAFL*VYAPQF Trigger: AAATTGTGGAGCATAGACCAAAAGAAAGGCCATCCA...CTTGTTGGGCATCAGTGGAAGGAGAAACCCTTGGTCCAGTAAAGGCTTGATTCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102805.4 |
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| 3UTR TCA 72 bp | TTAGACAGGAGCCCTTCTCAGTTAAGAATTTGGAGGTaGGTGTCTAACAAACATGAAGACAGCAGGGACGGG | + |
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Preference number: 3 (lower is better) Translates to: LDRSPSQLRIWR*VSNKHEDSRDG Trigger: CCCGTCCCTGCTGTCTTCATGTTTGTTAGACACTCACCTCCAAATTCTTAACTGAGAAGGGCTCCTGTCTAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102805.4 |
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| CDS-3UTR TCA 90 bp | TTTACTGGACCAAGGGTTTCTCCTTCCACTGATGCCCAACAAGGCCATCCACTGGTGTGGAGGCCCAGGTaGTGTTCCTGCCCAAGCAGG | + |
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Preference number: 4 (lower is better) Translates to: FTGPRVSPSTDAQQGHPLVWRPR*CSCPSR Trigger: CCTGCTTGGGCAGGAACATCACCTGGGCCTCCACAC...CAGTGGATGGCCTTGTTGGGCATCAGTGGAAGGAGAAACCCTTGGTCCAGTAAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102805.4 |
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| CDS-3UTR TCA 90 bp | TTTACTGGACCAAGGGTTTCTCCTTCCACTGATGCCCAACAAGGCCATCCACTGGCCACCGCACTGATCTaGAGGTCAGGAATGTGGTCA | + |
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Preference number: 4 (lower is better) Translates to: FTGPRVSPSTDAQQGHPLATALI*RSGMWS Trigger: TGACCACATTCCTGACCTTCAGATCAGTGCGGTGGC...CAGTGGATGGCCTTGTTGGGCATCAGTGGAAGGAGAAACCCTTGGTCCAGTAAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102805.4 |
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| CDS-3UTR GCA 90 bp | CAAGCCTTTACTGGACCAAGGGTTTCTCCTTCCACTGATGCCCAACAAGGCCATTCTGTGCAGCAGGCTTaGCTGCCATTGCCTCACAAA | + |
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Preference number: 4 (lower is better) Translates to: QAFTGPRVSPSTDAQQGHSVQQA*LPLPHK Trigger: TTTGTGAGGCAATGGCAGGCAAGCCTGCTGCACAGA...ATGGCCTTGTTGGGCATCAGTGGAAGGAGAAACCCTTGGTCCAGTAAAGGCTTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102805.4 |
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| CDS-3UTR GCA 90 bp | TTTACTGGACCAAGGGTTTCTCCTTCCACTGATGCCCAACAAGGCCATCCACTGAGGCTTGCCTGCCATTaGCTCACAAACTGCAGTTCT | + |
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Preference number: 4 (lower is better) Translates to: FTGPRVSPSTDAQQGHPLRLACH*LTNCSS Trigger: AGAACTGCAGTTTGTGAGGCAATGGCAGGCAAGCCT...CAGTGGATGGCCTTGTTGGGCATCAGTGGAAGGAGAAACCCTTGGTCCAGTAAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102805.4 |
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| CDS-3UTR TCA 90 bp | GTTGGTAATTTAGTCCCTGGGAGCTCTGGGAGATCTGGTTGGTTGATATTGTTGAGTGGCAAGTGCTCCTaGCAGTCACAGTGCCATTGC | + |
|
Preference number: 4 (lower is better) Translates to: VGNLVPGSSGRSGWLILLSGKCS*QSQCHC Trigger: GCAATGGCACTGTGACTGTCAGGAGCACTTGCCACT...CAACAATATCAACCAACCAGATCTCCCAGAGCTCCCAGGGACTAAATTACCAAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102805.4 |
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| CDS-3UTR CCA 90 bp | ATATGGGATGGGTCCTTAGGTGGGGCAGTCTCTGGATGGCCTTTCTTTTGGTCTTTTTCACGTAGAGAATaGTCAGCAAGGAAGGGGTGG | + |
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Preference number: 4 (lower is better) Translates to: IWDGSLGGAVSGWPFFWSFSRRE*SARKGW Trigger: CCACCCCTTCCTTGCTGACCATTCTCTACGTGAAAA...AGACCAAAAGAAAGGCCATCCAGAGACTGCCCCACCTAAGGACCCATCCCATAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000102805.4 |
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| CDS-3UTR CCA 90 bp | TTGGCTGCAAGCATCTACCTATGTATTTGTCAGGCTCTGGCTGAGCCTCTCAGGATTATGCAGGAAGGCTaGCCTCTGGGCTTTATTATC | + |
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Preference number: 4 (lower is better) Translates to: LAASIYLCICQALAEPLRIMQEG*PLGFII Trigger: GATAATAAAGCCCAGAGGCCAGCCTTCCTGCATAAT...CCTGAGAGGCTCAGCCAGAGCCTGACAAATACATAGGTAGATGCTTGCAGCCAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102805.4 |
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| 3UTR CAA 72 bp | GTCCTTAGGTGGGGCAGTCTCTGGATGGCCTTTCTTTaGGTCTATGCTCCACAATTTGTCCCCATATTTCCT | + |
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Preference number: 4 (lower is better) Translates to: VLRWGSLWMAFL*VYAPQFVPIFP Trigger: AGGAAATATGGGGACAAATTGTGGAGCATAGACCAAAAGAAAGGCCATCCAGAGACTGCCCCACCTAAGGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102805.4 |
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| 3UTR CAA 72 bp | AATTTAGTCCCTGGGAGCTCTGGGAGATCTGGTTGGTaGATATTGTTGTTCTTCCTATGGGGCTGCAAACCC | + |
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Preference number: 4 (lower is better) Translates to: NLVPGSSGRSGW*ILLFFLWGCKP Trigger: GGGTTTGCAGCCCCATAGGAAGAACAACAATATCAACCAACCAGATCTCCCAGAGCTCCCAGGGACTAAATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102805.4 |
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| CDS-3UTR GCA 90 bp | CTCTGGATGGCCTTTCTTTTGGTCTATGCTCCACAATTTGTCCCCATATTTCCTAGTCCAAGAGATCTGTaGAGCAGGCTTGCCTGCCAT | + |
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Preference number: 4 (lower is better) Translates to: LWMAFLLVYAPQFVPIFPSPRDL*SRLACH Trigger: ATGGCAGGCAAGCCTGCTGCACAGATCTCTTGGACT...AGGAAATATGGGGACAAATTGTGGAGCATAGACCAAAAGAAAGGCCATCCAGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102805.4 |
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| CDS-3UTR GCA 90 bp | GGAATCAAGCCTTTACTGGACCAAGGGTTTCTCCTTCCACTGATGCCCAACAAGTCGAATGAGAGACAATaGAGGACACAGCAGACACAT | + |
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Preference number: 4 (lower is better) Translates to: GIKPLLDQGFLLPLMPNKSNERQ*RTQQTH Trigger: ATGTGTCTGCTGTGTCCTGCATTGTCTCTCATTCGA...CTTGTTGGGCATCAGTGGAAGGAGAAACCCTTGGTCCAGTAAAGGCTTGATTCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102805.4 |
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| CDS-3UTR CCA 90 bp | CCTTTGGTTGGTAATTTAGTCCCTGGGAGCTCTGGGAGATCTGGTTGGTTGATATACTGCTTTTGTCAGTaGAATAGAACGGCAGCAGAG | + |
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Preference number: 4 (lower is better) Translates to: PLVGNLVPGSSGRSGWLIYCFCQ*NRTAAE Trigger: CTCTGCTGCCGTTCTATTCCACTGACAAAAGCAGTA...TATCAACCAACCAGATCTCCCAGAGCTCCCAGGGACTAAATTACCAACCAAAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102805.4 |
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| CDS-3UTR CCA 90 bp | CCACAATTTGTCCCCATATTTCCTTTAGACAGGAGCCCTTCTCAGTTAAGAATTTCAGCAAGGAAGGGGTaGTGCTGGTGGTACCTCTAC | + |
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Preference number: 4 (lower is better) Translates to: PQFVPIFPLDRSPSQLRISARKG*CWWYLY Trigger: GTAGAGGTACCACCAGCACCACCCCTTCCTTGCTGA...AATTCTTAACTGAGAAGGGCTCCTGTCTAAAGGAAATATGGGGACAAATTGTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102805.4 |
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| CDS-3UTR GCA 90 bp | ATGCTGTTTTCTGGTATGTGTCATCAGACTAATGAGCTTCCAGAAATCTGGATAGCAAGGAAGGGGTGGTaGTGGTGGTACCTCTACTCA | + |
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Preference number: 4 (lower is better) Translates to: MLFSGMCHQTNELPEIWIARKGW*WWYLYS Trigger: TGAGTAGAGGTACCACCAGCACCACCCCTTCCTTGC...TATCCAGATTTCTGGAAGCTCATTAGTCTGATGACACATACCAGAAAACAGCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102805.4 |
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| CDS-3UTR CCA 90 bp | CAAGCCTTTACTGGACCAAGGGTTTCTCCTTCCACTGATGCCCAACAAGGCCATTCTGTACAGACACTATaGTGTACACAGACACAAAAT | + |
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Preference number: 4 (lower is better) Translates to: QAFTGPRVSPSTDAQQGHSVQTL*CTQTQN Trigger: ATTTTGTGTCTGTGTACACCATAGTGTCTGTACAGA...ATGGCCTTGTTGGGCATCAGTGGAAGGAGAAACCCTTGGTCCAGTAAAGGCTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102805.4 |
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| 3UTR CAA 72 bp | TTCAGTCCTTTCTCTAACTCCTCCAATGGAGATTTTTaGCTCAGTCCAGTTGTTGGCTGCAAGCATCTACCT | + |
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Preference number: 4 (lower is better) Translates to: FSPFSNSSNGDF*LSPVVGCKHLP Trigger: AGGTAGATGCTTGCAGCCAACAACTGGACTGAGCAAAAAATCTCCATTGGAGGAGTTAGAGAAAGGACTGAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102805.4 |
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| 3UTR CAA 72 bp | CAGCAGGGACGGGTAAGCTGGATTCCAATGAGAAAGTaGATTACAAATGCTGTTTTCTGGTATGTGTCATCA | + |
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Preference number: 4 (lower is better) Translates to: QQGRVSWIPMRK*ITNAVFWYVSS Trigger: TGATGACACATACCAGAAAACAGCATTTGTAATCAACTTTCTCATTGGAATCCAGCTTACCCGTCCCTGCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102805.4 |
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| CDS-3UTR GCA 90 bp | ATGCTGTTTTCTGGTATGTGTCATCAGACTAATGAGCTTCCAGAAATCTGGATACATTGCCTCACAAACTaGAGTTCTATTTTCCCCGAG | + |
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Preference number: 4 (lower is better) Translates to: MLFSGMCHQTNELPEIWIHCLTN*SSIFPE Trigger: CTCGGGGAAAATAGAACTGCAGTTTGTGAGGCAATG...TATCCAGATTTCTGGAAGCTCATTAGTCTGATGACACATACCAGAAAACAGCAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000102805.4 |
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| CDS-3UTR CCA 90 bp | ATGCTGTTTTCTGGTATGTGTCATCAGACTAATGAGCTTCCAGAAATCTGGATACTCTACTCAGTTCTATaGACAGAGACTGATTACCAG | + |
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Preference number: 4 (lower is better) Translates to: MLFSGMCHQTNELPEIWILYSVL*TETDYQ Trigger: CTGGTAATCAGTCTCTGTCCATAGAACTGAGTAGAG...TATCCAGATTTCTGGAAGCTCATTAGTCTGATGACACATACCAGAAAACAGCAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102805.4 |
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| CDS-3UTR CAA 90 bp | ATATGGGATGGGTCCTTAGGTGGGGCAGTCTCTGGATGGCCTTTCTTTTGGTCTATCTGTGCAGCAGGCTaGCCTGCCATTGCCTCACAA | + |
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Preference number: 5 (lower is better) Translates to: IWDGSLGGAVSGWPFFWSICAAG*PAIASQ Trigger: TTGTGAGGCAATGGCAGGCAAGCCTGCTGCACAGAT...AGACCAAAAGAAAGGCCATCCAGAGACTGCCCCACCTAAGGACCCATCCCATAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102805.4 |
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| CDS CCA 90 bp | TCAGCAAGGAAGGGGTGGTGCTGGTGGTACCTCTACTCAGTTCTATaGACAGAGACTGATTACCAGTCGAATGAGAGACAATGCAGGACA | + |
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Preference number: 5 (lower is better) Translates to: SARKGWCWWYLYSVL*TETDYQSNERQCRT Trigger: TGTCCTGCATTGTCTCTCATTCGACTGGTAATCAGTCTCTGTCCATAGAACTGAGTAGAGGTACCACCAGCACCACCCCTTCCTTGCTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102805.4 |
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| CDS-3UTR CAA 90 bp | CAAGCCTTTACTGGACCAAGGGTTTCTCCTTCCACTGATGCCCAACAAGGCCATCCCAAGCAGGTTTCATaGGTCTCCTTTGTTTCTACT | + |
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Preference number: 5 (lower is better) Translates to: QAFTGPRVSPSTDAQQGHPKQVS*VSFVST Trigger: AGTAGAAACAAAGGAGACCAATGAAACCTGCTTGGG...ATGGCCTTGTTGGGCATCAGTGGAAGGAGAAACCCTTGGTCCAGTAAAGGCTTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102805.4 |
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| CDS-3UTR CAA 90 bp | AAGCCTTTACTGGACCAAGGGTTTCTCCTTCCACTGATGCCCAACAAGGCCATCTTTCATTGGTCTCCTTaGTTTCTACTTTGTAGGCCA | + |
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Preference number: 5 (lower is better) Translates to: KPLLDQGFLLPLMPNKAIFHWSP*FLLCRP Trigger: TGGCCTACAAAGTAGAAACAAAGGAGACCAATGAAA...GATGGCCTTGTTGGGCATCAGTGGAAGGAGAAACCCTTGGTCCAGTAAAGGCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102805.4 |
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| CDS TCA 90 bp | CCATCTGTACAGACACTATGGTGTACACAGACACAAAATTATAGATaGAGATCAGCAAAGTCAAAGCCGGAGTCCTCCCCAAAGCATGCA | + |
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Preference number: 5 (lower is better) Translates to: PSVQTLWCTQTQNYR*RSAKSKPESSPKHA Trigger: TGCATGCTTTGGGGAGGACTCCGGCTTTGACTTTGCTGATCTTCATCTATAATTTTGTGTCTGTGTACACCATAGTGTCTGTACAGATGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102805.4 |
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| CDS TCA 72 bp | GAAGGTCAGGAATGTGGTCAGGTGTGGAGGCCCAGGTaGTGTTCCTGCCCAAGCAGGTTTCATTGGTCTCCT | + |
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Preference number: 6 (lower is better) Translates to: EGQECGQVWRPR*CSCPSRFHWSP Trigger: AGGAGACCAATGAAACCTGCTTGGGCAGGAACATCACCTGGGCCTCCACACCTGACCACATTCCTGACCTTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102805.4 |
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| CDS GCA 72 bp | AGTGACACAGTCCCCATCTGGAGTCCAAGAGATCTGTaGAGCAGGCTTGCCTGCCATTGCCTCACAAACTGC | + |
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Preference number: 6 (lower is better) Translates to: SDTVPIWSPRDL*SRLACHCLTNC Trigger: GCAGTTTGTGAGGCAATGGCAGGCAAGCCTGCTGCACAGATCTCTTGGACTCCAGATGGGGACTGTGTCACT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102805.4 |
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| CDS TCA 72 bp | ATAAGTAATTCCCCTCATGCTGGAGGGCCACCGCACTaGTCTGAAGGTCAGGAATGTGGTCAGGTGTGGAGG | + |
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Preference number: 6 (lower is better) Translates to: ISNSPHAGGPPH*SEGQECGQVWR Trigger: CCTCCACACCTGACCACATTCCTGACCTTCAGATCAGTGCGGTGGCCCTCCAGCATGAGGGGAATTACTTAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102805.4 |
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| CDS CAA 90 bp | TTGTTCTGCTCCCAGTGGCAAGTGCTCCTGACAGTCACAGTGCCATaGCTGTGTGACTCACTCTTAGTGACACAGTCCCCATCTGGAGTC | + |
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Preference number: 6 (lower is better) Translates to: LFCSQWQVLLTVTVP*LCDSLLVTQSPSGV Trigger: GACTCCAGATGGGGACTGTGTCACTAAGAGTGAGTCACACAGCAATGGCACTGTGACTGTCAGGAGCACTTGCCACTGGGAGCAGAACAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102805.4 |
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| CDS TCA 72 bp | GCAAGTGCTCCTGACAGTCACAGTGCCATTGCTGTGTaGCTCACTCTTAGTGACACAGTCCCCATCTGGAGT | + |
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Preference number: 6 (lower is better) Translates to: ASAPDSHSAIAV*LTLSDTVPIWS Trigger: ACTCCAGATGGGGACTGTGTCACTAAGAGTGAGTCACACAGCAATGGCACTGTGACTGTCAGGAGCACTTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102805.4 |
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| CDS CCA 72 bp | CGTAGAGAATGGTCAGCAAGGAAGGGGTGGTGCTGGTaGTACCTCTACTCAGTTCTATGGACAGAGACTGAT | + |
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Preference number: 6 (lower is better) Translates to: RREWSARKGWCW*YLYSVLWTETD Trigger: ATCAGTCTCTGTCCATAGAACTGAGTAGAGGTACCACCAGCACCACCCCTTCCTTGCTGACCATTCTCTACG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102805.4 |
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| CDS CCA 72 bp | TCACGTAGAGAATGGTCAGCAAGGAAGGGGTGGTGCTaGTGGTACCTCTACTCAGTTCTATGGACAGAGACT | + |
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Preference number: 6 (lower is better) Translates to: SRREWSARKGWC*WYLYSVLWTET Trigger: AGTCTCTGTCCATAGAACTGAGTAGAGGTACCACCAGCACCACCCCTTCCTTGCTGACCATTCTCTACGTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102805.4 |
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| CDS GCA 72 bp | CTGTGCAGCAGGCTTGCCTGCCATTGCCTCACAAACTaGAGTTCTATTTTCCCCGAGAAAGTAGGTTACTTC | + |
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Preference number: 6 (lower is better) Translates to: LCSRLACHCLTN*SSIFPEKVGYF Trigger: GAAGTAACCTACTTTCTCGGGGAAAATAGAACTGCAGTTTGTGAGGCAATGGCAGGCAAGCCTGCTGCACAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102805.4 |
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| CDS GCA 72 bp | TTTTCACGTAGAGAATGGTCAGCAAGGAAGGGGTGGTaGTGGTGGTACCTCTACTCAGTTCTATGGACAGAG | + |
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Preference number: 6 (lower is better) Translates to: FSRREWSARKGW*WWYLYSVLWTE Trigger: CTCTGTCCATAGAACTGAGTAGAGGTACCACCAGCACCACCCCTTCCTTGCTGACCATTCTCTACGTGAAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102805.4 |
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| CDS CCA 72 bp | CCATTTTCACGTAGAGAATGGTCAGCAAGGAAGGGGTaGTGCTGGTGGTACCTCTACTCAGTTCTATGGACA | + |
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Preference number: 6 (lower is better) Translates to: PFSRREWSARKG*CWWYLYSVLWT Trigger: TGTCCATAGAACTGAGTAGAGGTACCACCAGCACCACCCCTTCCTTGCTGACCATTCTCTACGTGAAAATGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102805.4 |
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| CDS TCA 72 bp | CAGACACTATGGTGTACACAGACACAAAATTATAGATaGAGATCAGCAAAGTCAAAGCCGGAGTCCTCCCCA | + |
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Preference number: 6 (lower is better) Translates to: QTLWCTQTQNYR*RSAKSKPESSP Trigger: TGGGGAGGACTCCGGCTTTGACTTTGCTGATCTTCATCTATAATTTTGTGTCTGTGTACACCATAGTGTCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102805.4 |
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| CDS CAA 72 bp | GGAGGTCATAGACTTTATGGAAATTCCCTTCAGGTGTaGTTATCTCACATAAGTAATTCCCCTCATGCTGGA | + |
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Preference number: 6 (lower is better) Translates to: GGHRLYGNSLQV*LSHISNSPHAG Trigger: TCCAGCATGAGGGGAATTACTTATGTGAGATAACAACACCTGAAGGGAATTTCCATAAAGTCTATGACCTCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102805.4 |
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