Pregenerated sensors for CD200R1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022667Ensembl transcript IDs: ENSMUST00000057488.15, ENSMUST00000134625.2, ENSMUST00000231633.2
Found 79 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TTCACTCGTAGTGACACAGTCCCCATCTGGAGACCAAGAGATCTGTaGAGCAGGCTTGCCTGCCATTGCCTCACAGACTGCAGATCTGTT | + |
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Preference number: 1 (lower is better) Translates to: FTRSDTVPIWRPRDL*SRLACHCLTDCRSV Trigger: AACAGATCTGCAGTCTGTGAGGCAATGGCAGGCAAGCCTGCTGCACAGATCTCTTGGTCTCCAGATGGGGACTGTGTCACTACGAGTGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000231633.2 |
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| 3UTR GCA 90 bp | ACAGTCCCCATCTGGAGACCAAGAGATCTGTGCAGCAGGCTTGCCTaGCATTGCCTCACAGACTGCAGATCTGTTTTTCTCTGGAAAGTA | + |
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Preference number: 1 (lower is better) Translates to: TVPIWRPRDLCSRLA*HCLTDCRSVFLWKV Trigger: TACTTTCCAGAGAAAAACAGATCTGCAGTCTGTGAGGCAATGGCAGGCAAGCCTGCTGCACAGATCTCTTGGTCTCCAGATGGGGACTGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000231633.2 |
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| 3UTR TCA 90 bp | AATGGCCGACAAAGTAAGGCAGTCTGTGCCATTGACTTCGCCTTGTaGTACTGGAAATGCCTCCACCTTAGTCACAGTATCATAGAGTGG | + |
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Preference number: 1 (lower is better) Translates to: NGRQSKAVCAIDFAL*YWKCLHLSHSIIEW Trigger: CCACTCTATGATACTGTGACTAAGGTGGAGGCATTTCCAGTATCACAAGGCGAAGTCAATGGCACAGACTGCCTTACTTTGTCGGCCATT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000134625.2 ENSMUST00000231633.2 |
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| 3UTR TCA 90 bp | ACACCTCTACTCAGTTCTATGGACAGAGATTGGTTACCAGTCAAATaGGAGACAATGCAGGACACATCAGACACATTGTTCTGCTCCCAG | + |
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Preference number: 1 (lower is better) Translates to: TPLLSSMDRDWLPVK*ETMQDTSDTLFCSQ Trigger: CTGGGAGCAGAACAATGTGTCTGATGTGTCCTGCATTGTCTCTCATTTGACTGGTAACCAATCTCTGTCCATAGAACTGAGTAGAGGTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231633.2 |
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| 3UTR GCA 90 bp | AAGATCATGAGCTCCGGAGGAGAGGTGGTACCGGTCTTCTACTGTTaGTTTGCTAAATGGACACACTGTCCATTGTCTTCTAAACATTTC | + |
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Preference number: 1 (lower is better) Translates to: KIMSSGGEVVPVFYC*FAKWTHCPLSSKHF Trigger: GAAATGTTTAGAAGACAATGGACAGTGTGTCCATTTAGCAAAGCAACAGTAGAAGACCGGTACCACCTCTCCTCCGGAGCTCATGATCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231633.2 |
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| 3UTR CCA 90 bp | TCCGGAGGAGAGGTGGTACCGGTCTTCTACTGTTGCTTTGCTAAATaGACACACTGTCCATTGTCTTCTAAACATTTCTTTTATACTCAT | + |
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Preference number: 1 (lower is better) Translates to: SGGEVVPVFYCCFAK*THCPLSSKHFFYTH Trigger: ATGAGTATAAAAGAAATGTTTAGAAGACAATGGACAGTGTGTCCATTTAGCAAAGCAACAGTAGAAGACCGGTACCACCTCTCCTCCGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000231633.2 |
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| 3UTR CCA 90 bp | TGGCTAATGCAGGGACCCATAACTATTCAAGTTTCTGAGAATAAATaGTTGTTGAATGGAATGTTCAGCCTTAAACATTGTATATCTACC | + |
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Preference number: 1 (lower is better) Translates to: WLMQGPITIQVSENK*LLNGMFSLKHCIST Trigger: GGTAGATATACAATGTTTAAGGCTGAACATTCCATTCAACAACCATTTATTCTCAGAAACTTGAATAGTTATGGGTCCCTGCATTAGCCA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231633.2 |
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| 3UTR-3UTR GCA 90 bp | AAAGATCATGAGCTCCGGAGGAGAGGTGGTACCGGTCTTCTACTGTTGCTTTGCTCTGTGCAGCAGGCTTaGCTGCCATTGCCTCACAGA | + |
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Preference number: 2 (lower is better) Translates to: KDHELRRRGGTGLLLLLCSVQQA*LPLPHR Trigger: TCTGTGAGGCAATGGCAGGCAAGCCTGCTGCACAGA...GCAAAGCAACAGTAGAAGACCGGTACCACCTCTCCTCCGGAGCTCATGATCTTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231633.2 |
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| 3UTR CAA 90 bp | CCCCATCTGGAGACCAAGAGATCTGTGCAGCAGGCTTGCCTGCCATaGCCTCACAGACTGCAGATCTGTTTTTCTCTGGAAAGTAGGTTA | + |
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Preference number: 2 (lower is better) Translates to: PHLETKRSVQQACLP*PHRLQICFSLESRL Trigger: TAACCTACTTTCCAGAGAAAAACAGATCTGCAGTCTGTGAGGCAATGGCAGGCAAGCCTGCTGCACAGATCTCTTGGTCTCCAGATGGGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000231633.2 |
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| 3UTR-3UTR TCA 90 bp | CAGTCAAATGAGAGACAATGCAGGACACATCAGACACATTGTTCTGCTCCCAGTGGAGGGTCACTGCACTaGTCTGAAGTTCAGGACTGT | + |
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Preference number: 2 (lower is better) Translates to: QSNERQCRTHQTHCSAPSGGSLH*SEVQDC Trigger: ACAGTCCTGAACTTCAGATCAGTGCAGTGACCCTCC...ACTGGGAGCAGAACAATGTGTCTGATGTGTCCTGCATTGTCTCTCATTTGACTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231633.2 |
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| 3UTR-3UTR GCA 90 bp | AAAGATCATGAGCTCCGGAGGAGAGGTGGTACCGGTCTTCTACTGTTGCTTTGCCATTGCCTCACAGACTaGAGATCTGTTTTTCTCTGG | + |
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Preference number: 2 (lower is better) Translates to: KDHELRRRGGTGLLLLLCHCLTD*RSVFLW Trigger: CCAGAGAAAAACAGATCTGCAGTCTGTGAGGCAATG...GCAAAGCAACAGTAGAAGACCGGTACCACCTCTCCTCCGGAGCTCATGATCTTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000231633.2 |
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| 3UTR-3UTR CCA 90 bp | AATCAGGTGGCCAGAAAGATCATGAGCTCCGGAGGAGAGGTGGTACCGGTCTTCTGTTGCTTTGCTAAATaGACACACTGTCCATTGTCT | + |
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Preference number: 2 (lower is better) Translates to: NQVARKIMSSGGEVVPVFCCFAK*THCPLS Trigger: AGACAATGGACAGTGTGTCCATTTAGCAAAGCAACA...GAAGACCGGTACCACCTCTCCTCCGGAGCTCATGATCTTTCTGGCCACCTGATT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000134625.2 ENSMUST00000231633.2 |
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| 3UTR-3UTR TCA 90 bp | CCCTGTTTCCACAGAAAGAAAGAGAATGGACTGACAGAGTACCCAGTACCTCAGTTGTGTCAGAGGAGATaGACTGTTGTTCTGTGTTGT | + |
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Preference number: 2 (lower is better) Translates to: PCFHRKKENGLTEYPVPQLCQRR*TVVLCC Trigger: ACAACACAGAACAACAGTTCATCTCCTCTGACACAA...CTGAGGTACTGGGTACTCTGTCAGTCCATTCTCTTTCTTTCTGTGGAAACAGGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231633.2 |
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| 3UTR-3UTR CCA 90 bp | CCATGTTGTGCAAACACTTTACACCTAACTGCCATTTTGTATCCTGAAACCCAAGCTTCAGAGACAAGATaGCATGAGCAGGCAAACCTG | + |
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Preference number: 2 (lower is better) Translates to: PCCANTLHLTAILYPETQASETR*HEQANL Trigger: CAGGTTTGCCTGCTCATGCCATCTTGTCTCTGAAGC...TTGGGTTTCAGGATACAAAATGGCAGTTAGGTGTAAAGTGTTTGCACAACATGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000231633.2 |
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| 3UTR-3UTR TCA 90 bp | AGTCACAGTATCATAGAGTGGATTGCTCTTCTCTGTATAGCTAGCATAAGGCTGGCACATAAAGCAATTTaGGAGCCTACAATCCAAACA | + |
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Preference number: 2 (lower is better) Translates to: SHSIIEWIALLCIASIRLAHKAI*EPTIQT Trigger: TGTTTGGATTGTAGGCTCTCAAATTGCTTTATGTGC...CAGCCTTATGCTAGCTATACAGAGAAGAGCAATCCACTCTATGATACTGTGACT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231633.2 |
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| 3UTR-3UTR CCA 90 bp | TTCTGTTGCTTGCTGTCTTTGCAGAATACTAAGAACCCTGTTTCCACAGAAAGATGTTGCTTTGCTAAATaGACACACTGTCCATTGTCT | + |
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Preference number: 2 (lower is better) Translates to: FCCLLSLQNTKNPVSTERCCFAK*THCPLS Trigger: AGACAATGGACAGTGTGTCCATTTAGCAAAGCAACA...TCTTTCTGTGGAAACAGGGTTCTTAGTATTCTGCAAAGACAGCAAGCAACAGAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231633.2 |
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| 3UTR-3UTR CCA 90 bp | CCATGTTGTGCAAACACTTTACACCTAACTGCCATTTTGTATCCTGAAACCCAATACTGCTTTTGTCAGTaGAATAGAAAAGCAGCAGAG | + |
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Preference number: 2 (lower is better) Translates to: PCCANTLHLTAILYPETQYCFCQ*NRKAAE Trigger: CTCTGCTGCTTTTCTATTCCACTGACAAAAGCAGTA...TTGGGTTTCAGGATACAAAATGGCAGTTAGGTGTAAAGTGTTTGCACAACATGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000231633.2 |
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| 3UTR-3UTR CCA 90 bp | TTCTGTTGCTTGCTGTCTTTGCAGAATACTAAGAACCCTGTTTCCACAGAAAGACACAGTATCATAGAGTaGATTGCTCTTCTCTGTATA | + |
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Preference number: 2 (lower is better) Translates to: FCCLLSLQNTKNPVSTERHSIIE*IALLCI Trigger: TATACAGAGAAGAGCAATCCACTCTATGATACTGTG...TCTTTCTGTGGAAACAGGGTTCTTAGTATTCTGCAAAGACAGCAAGCAACAGAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231633.2 |
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| 3UTR CAA 90 bp | CTAATGCAGGGACCCATAACTATTCAAGTTTCTGAGAATAAATGGTaGTTGAATGGAATGTTCAGCCTTAAACATTGTATATCTACCACC | + |
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Preference number: 2 (lower is better) Translates to: LMQGPITIQVSENKW*LNGMFSLKHCISTT Trigger: GGTGGTAGATATACAATGTTTAAGGCTGAACATTCCATTCAACAACCATTTATTCTCAGAAACTTGAATAGTTATGGGTCCCTGCATTAG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231633.2 |
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| 3UTR CAA 90 bp | GTACCGGTCTTCTACTGTTGCTTTGCTAAATGGACACACTGTCCATaGTCTTCTAAACATTTCTTTTATACTCATAAATTAATGCTGCTT | + |
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Preference number: 2 (lower is better) Translates to: VPVFYCCFAKWTHCP*SSKHFFYTHKLMLL Trigger: AAGCAGCATTAATTTATGAGTATAAAAGAAATGTTTAGAAGACAATGGACAGTGTGTCCATTTAGCAAAGCAACAGTAGAAGACCGGTAC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000231633.2 |
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| 3UTR GCA 72 bp | AGTGACACAGTCCCCATCTGGAGACCAAGAGATCTGTaGAGCAGGCTTGCCTGCCATTGCCTCACAGACTGC | + |
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Preference number: 3 (lower is better) Translates to: SDTVPIWRPRDL*SRLACHCLTDC Trigger: GCAGTCTGTGAGGCAATGGCAGGCAAGCCTGCTGCACAGATCTCTTGGTCTCCAGATGGGGACTGTGTCACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000231633.2 |
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| 3UTR TCA 72 bp | GCATGTGCTCCTGACAGTCACAGTGCCATTGCTGTGTaGTTCACTCGTAGTGACACAGTCCCCATCTGGAGA | + |
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Preference number: 3 (lower is better) Translates to: ACAPDSHSAIAV*FTRSDTVPIWR Trigger: TCTCCAGATGGGGACTGTGTCACTACGAGTGAATCACACAGCAATGGCACTGTGACTGTCAGGAGCACATGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000231633.2 |
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| 3UTR-3UTR CAA 90 bp | CCATGTTGTGCAAACACTTTACACCTAACTGCCATTTTGTATCCTGAAACCCAAATCTGTGCAGCAGGCTaGCCTGCCATTGCCTCACAG | + |
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Preference number: 3 (lower is better) Translates to: PCCANTLHLTAILYPETQICAAG*PAIASQ Trigger: CTGTGAGGCAATGGCAGGCAAGCCTGCTGCACAGAT...TTGGGTTTCAGGATACAAAATGGCAGTTAGGTGTAAAGTGTTTGCACAACATGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000231633.2 |
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| 3UTR-3UTR CAA 90 bp | AAAGATCATGAGCTCCGGAGGAGAGGTGGTACCGGTCTTCTACTGTTGCTTTGCGGAATAAAATTGGTGTaGAACTCAAAACAGCAGGGG | + |
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Preference number: 3 (lower is better) Translates to: KDHELRRRGGTGLLLLLCGIKLV*NSKQQG Trigger: CCCCTGCTGTTTTGAGTTCAACACCAATTTTATTCC...GCAAAGCAACAGTAGAAGACCGGTACCACCTCTCCTCCGGAGCTCATGATCTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000231633.2 |
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| 3UTR TCA 72 bp | CAAGATGGCATGAGCAGGCAAACCTGGTGCTCACTTTaGAGAACACCTCTACTCAGTTCTATGGACAGAGAT | + |
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Preference number: 3 (lower is better) Translates to: QDGMSRQTWCSL*RTPLLSSMDRD Trigger: ATCTCTGTCCATAGAACTGAGTAGAGGTGTTCTTCAAAGTGAGCACCAGGTTTGCCTGCTCATGCCATCTTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231633.2 |
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| 3UTR GCA 72 bp | TGGACAGAGATTGGTTACCAGTCAAATGAGAGACAATaGAGGACACATCAGACACATTGTTCTGCTCCCAGT | + |
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Preference number: 3 (lower is better) Translates to: WTEIGYQSNERQ*RTHQTHCSAPS Trigger: ACTGGGAGCAGAACAATGTGTCTGATGTGTCCTGCATTGTCTCTCATTTGACTGGTAACCAATCTCTGTCCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231633.2 |
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| 3UTR-3UTR CAA 90 bp | CCCTGTTTCCACAGAAAGAAAGAGAATGGACTGACAGAGTACCCAGTACCTCAGTCTTATCAGTACAACTaGACCCTTAGAAGATCAGAC | + |
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Preference number: 3 (lower is better) Translates to: PCFHRKKENGLTEYPVPQSYQYN*TLRRSD Trigger: GTCTGATCTTCTAAGGGTCAAGTTGTACTGATAAGA...CTGAGGTACTGGGTACTCTGTCAGTCCATTCTCTTTCTTTCTGTGGAAACAGGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231633.2 |
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| 3UTR-3UTR CAA 90 bp | AGATCTGTTTTTCTCTGGAAAGTAGGTTACTTCAGGGGGCACCAGCACTTGGAGTCTAATTTTGGCAATTaGCATTTTCTGAAGCCACTG | + |
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Preference number: 3 (lower is better) Translates to: RSVFLWKVGYFRGHQHLESNFGN*HFLKPL Trigger: CAGTGGCTTCAGAAAATGCAAATTGCCAAAATTAGA...CTCCAAGTGCTGGTGCCCCCTGAAGTAACCTACTTTCCAGAGAAAAACAGATCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000231633.2 |
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| 3UTR-3UTR CAA 90 bp | CAGTCAAATGAGAGACAATGCAGGACACATCAGACACATTGTTCTGCTCCCAGTGTCTTTGTATCTACTTaGTATGCTATTGTGCAGGAT | + |
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Preference number: 3 (lower is better) Translates to: QSNERQCRTHQTHCSAPSVFVST*YAIVQD Trigger: ATCCTGCACAATAGCATACAAAGTAGATACAAAGAC...ACTGGGAGCAGAACAATGTGTCTGATGTGTCCTGCATTGTCTCTCATTTGACTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231633.2 |
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| 3UTR CCA 72 bp | GAGGTGGTACCGGTCTTCTACTGTTGCTTTGCTAAATaGACACACTGTCCATTGTCTTCTAAACATTTCTTT | + |
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Preference number: 3 (lower is better) Translates to: EVVPVFYCCFAK*THCPLSSKHFF Trigger: AAAGAAATGTTTAGAAGACAATGGACAGTGTGTCCATTTAGCAAAGCAACAGTAGAAGACCGGTACCACCTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231633.2 |
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| 3UTR-3UTR CAA 90 bp | TGTACAGCTGTGAATAAGAAGCCATGTTGTGCAAACACTTTACACCTAACTGCCAAGCAGCTGGTTTCATaGGTCTTTGTATCTACTTTG | + |
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Preference number: 3 (lower is better) Translates to: CTAVNKKPCCANTLHLTAKQLVS*VFVSTL Trigger: CAAAGTAGATACAAAGACCAATGAAACCAGCTGCTT...GGCAGTTAGGTGTAAAGTGTTTGCACAACATGGCTTCTTATTCACAGCTGTACA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231633.2 |
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| 3UTR TCA 72 bp | GTTGTTCTGTGTTGTTTGATTCTTATCAGTACAACTTaGCCCTTAGAAGATCAGACTAGATCATGCAAGTGC | + |
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Preference number: 3 (lower is better) Translates to: VVLCCLILISTT*PLEDQTRSCKC Trigger: GCACTTGCATGATCTAGTCTGATCTTCTAAGGGTCAAGTTGTACTGATAAGAATCAAACAACACAGAACAAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231633.2 |
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| CDS-3UTR TCA 90 bp | GGTTACCCAAAATCAGGTGGCCAGAAAGATCATGAGCTCCGGAGGAGAGGTGGTGTGTGGAGGCCCAGGTaGTGTTCCTGCCCAAGCAGC | + |
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Preference number: 4 (lower is better) Translates to: GYPKSGGQKDHELRRRGGVWRPR*CSCPSS Trigger: GCTGCTTGGGCAGGAACATCACCTGGGCCTCCACAC...ACCACCTCTCCTCCGGAGCTCATGATCTTTCTGGCCACCTGATTTTGGGTAACC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000134625.2 |
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| CDS-3UTR TCA 90 bp | AAAGATCATGAGCTCCGGAGGAGAGGTGGTACCGGTCTTCTACTGTTGCTTTGCAGTGGCATGTGCTCCTaGCAGTCACAGTGCCATTGC | + |
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Preference number: 4 (lower is better) Translates to: KDHELRRRGGTGLLLLLCSGMCS*QSQCHC Trigger: GCAATGGCACTGTGACTGTCAGGAGCACATGCCACT...GCAAAGCAACAGTAGAAGACCGGTACCACCTCTCCTCCGGAGCTCATGATCTTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000134625.2 |
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| CDS-3UTR GCA 90 bp | GTGGCCAGAAAGATCATGAGCTCCGGAGGAGAGGTGGTACCGGTCTTCTACTGTATGCTGGAGGGTCACTaGACTGATCTGAAGTTCAGG | + |
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Preference number: 4 (lower is better) Translates to: VARKIMSSGGEVVPVFYCMLEGH*TDLKFR Trigger: CCTGAACTTCAGATCAGTGCAGTGACCCTCCAGCAT...ACAGTAGAAGACCGGTACCACCTCTCCTCCGGAGCTCATGATCTTTCTGGCCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000134625.2 |
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| CDS-3UTR CCA 90 bp | GTTACCCAAAATCAGGTGGCCAGAAAGATCATGAGCTCCGGAGGAGAGGTGGTAGACACAGTCCCCATCTaGAGACCAAGAGATCTGTGC | + |
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Preference number: 4 (lower is better) Translates to: VTQNQVARKIMSSGGEVVDTVPI*RPRDLC Trigger: GCACAGATCTCTTGGTCTCCAGATGGGGACTGTGTC...TACCACCTCTCCTCCGGAGCTCATGATCTTTCTGGCCACCTGATTTTGGGTAAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000134625.2 |
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| CDS-3UTR GCA 90 bp | AAAGATCATGAGCTCCGGAGGAGAGGTGGTACCGGTCTTCTACTGTTGCTTTGCTCAGACACATTGTTCTaGTCCCAGTGGCATGTGCTC | + |
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Preference number: 4 (lower is better) Translates to: KDHELRRRGGTGLLLLLCSDTLF*SQWHVL Trigger: GAGCACATGCCACTGGGAGCAGAACAATGTGTCTGA...GCAAAGCAACAGTAGAAGACCGGTACCACCTCTCCTCCGGAGCTCATGATCTTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000134625.2 |
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| CDS-3UTR TCA 90 bp | GTTACCCAAAATCAGGTGGCCAGAAAGATCATGAGCTCCGGAGGAGAGGTGGTAAGTGCCATTGCTGTGTaGTTCACTCGTAGTGACACA | + |
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Preference number: 4 (lower is better) Translates to: VTQNQVARKIMSSGGEVVSAIAV*FTRSDT Trigger: TGTGTCACTACGAGTGAATCACACAGCAATGGCACT...TACCACCTCTCCTCCGGAGCTCATGATCTTTCTGGCCACCTGATTTTGGGTAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000134625.2 |
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| CDS-3UTR TCA 90 bp | GTGCTTTTTAATAGCTTTGGAAGAGCTAATTTCCAAGTAGTCCTTCCATTGTCGGTGTGGAGGCCCAGGTaGTGTTCCTGCCCAAGCAGC | + |
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Preference number: 4 (lower is better) Translates to: VLFNSFGRANFQVVLPLSVWRPR*CSCPSS Trigger: GCTGCTTGGGCAGGAACATCACCTGGGCCTCCACAC...CGACAATGGAAGGACTACTTGGAAATTAGCTCTTCCAAAGCTATTAAAAAGCAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057488.15 |
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| CDS-3UTR GCA 90 bp | CAAAATCAGGTGGCCAGAAAGATCATGAGCTCCGGAGGAGAGGTGGTACCGGTCTCAAATGAGAGACAATaGAGGACACATCAGACACAT | + |
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Preference number: 4 (lower is better) Translates to: QNQVARKIMSSGGEVVPVSNERQ*RTHQTH Trigger: ATGTGTCTGATGTGTCCTGCATTGTCTCTCATTTGA...GACCGGTACCACCTCTCCTCCGGAGCTCATGATCTTTCTGGCCACCTGATTTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000134625.2 |
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| CDS-3UTR GCA 90 bp | ATTGGTTACCCAAAATCAGGTGGCCAGAAAGATCATGAGCTCCGGAGGAGAGGTCATTGCCTCACAGACTaGAGATCTGTTTTTCTCTGG | + |
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Preference number: 4 (lower is better) Translates to: IGYPKSGGQKDHELRRRGHCLTD*RSVFLW Trigger: CCAGAGAAAAACAGATCTGCAGTCTGTGAGGCAATG...ACCTCTCCTCCGGAGCTCATGATCTTTCTGGCCACCTGATTTTGGGTAACCAAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000134625.2 |
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| CDS-3UTR TCA 90 bp | ATTGGTTACCCAAAATCAGGTGGCCAGAAAGATCATGAGCTCCGGAGGAGAGGTTTGTGTCAGAGGAGATaGACTGTTGTTCTGTGTTGT | + |
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Preference number: 4 (lower is better) Translates to: IGYPKSGGQKDHELRRRGLCQRR*TVVLCC Trigger: ACAACACAGAACAACAGTTCATCTCCTCTGACACAA...ACCTCTCCTCCGGAGCTCATGATCTTTCTGGCCACCTGATTTTGGGTAACCAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000134625.2 |
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| CDS-3UTR CCA 90 bp | AAAGATCATGAGCTCCGGAGGAGAGGTGGTACCGGTCTTCTACTGTTGCTTTGCTACTGCTTTTGTCAGTaGAATAGAAAAGCAGCAGAG | + |
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Preference number: 4 (lower is better) Translates to: KDHELRRRGGTGLLLLLCYCFCQ*NRKAAE Trigger: CTCTGCTGCTTTTCTATTCCACTGACAAAAGCAGTA...GCAAAGCAACAGTAGAAGACCGGTACCACCTCTCCTCCGGAGCTCATGATCTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000134625.2 |
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| CDS-3UTR TCA 90 bp | ACATTTGTGCTTTTTAATAGCTTTGGAAGAGCTAATTTCCAAGTAGTCCTTCCAAGTGGCATGTGCTCCTaGCAGTCACAGTGCCATTGC | + |
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Preference number: 4 (lower is better) Translates to: TFVLFNSFGRANFQVVLPSGMCS*QSQCHC Trigger: GCAATGGCACTGTGACTGTCAGGAGCACATGCCACT...TGGAAGGACTACTTGGAAATTAGCTCTTCCAAAGCTATTAAAAAGCACAAATGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057488.15 |
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| CDS-3UTR TCA 90 bp | ACATTTGTGCTTTTTAATAGCTTTGGAAGAGCTAATTTCCAAGTAGTCCTTCCAGGAGGGTCACTGCACTaGTCTGAAGTTCAGGACTGT | + |
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Preference number: 4 (lower is better) Translates to: TFVLFNSFGRANFQVVLPGGSLH*SEVQDC Trigger: ACAGTCCTGAACTTCAGATCAGTGCAGTGACCCTCC...TGGAAGGACTACTTGGAAATTAGCTCTTCCAAAGCTATTAAAAAGCACAAATGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057488.15 |
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| CDS-3UTR GCA 90 bp | ACATTTGTGCTTTTTAATAGCTTTGGAAGAGCTAATTTCCAAGTAGTCCTTCCAAGACCAAGAGATCTGTaGAGCAGGCTTGCCTGCCAT | + |
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Preference number: 4 (lower is better) Translates to: TFVLFNSFGRANFQVVLPRPRDL*SRLACH Trigger: ATGGCAGGCAAGCCTGCTGCACAGATCTCTTGGTCT...TGGAAGGACTACTTGGAAATTAGCTCTTCCAAAGCTATTAAAAAGCACAAATGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057488.15 |
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| CDS-3UTR CCA 90 bp | ACATTTGTGCTTTTTAATAGCTTTGGAAGAGCTAATTTCCAAGTAGTCCTTCCAGACACAGTCCCCATCTaGAGACCAAGAGATCTGTGC | + |
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Preference number: 4 (lower is better) Translates to: TFVLFNSFGRANFQVVLPDTVPI*RPRDLC Trigger: GCACAGATCTCTTGGTCTCCAGATGGGGACTGTGTC...TGGAAGGACTACTTGGAAATTAGCTCTTCCAAAGCTATTAAAAAGCACAAATGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057488.15 |
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| CDS-3UTR CCA 90 bp | AGTCACAGTATCATAGAGTGGATTGCTCTTCTCTGTATAGCTAGCATAAGGCTGCTCTACTCAGTTCTATaGACAGAGATTGGTTACCAG | + |
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Preference number: 4 (lower is better) Translates to: SHSIIEWIALLCIASIRLLYSVL*TEIGYQ Trigger: CTGGTAACCAATCTCTGTCCATAGAACTGAGTAGAG...CAGCCTTATGCTAGCTATACAGAGAAGAGCAATCCACTCTATGATACTGTGACT 42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000134625.2 |
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| CDS-3UTR GCA 90 bp | GCTAATTTCCAAGTAGTCCTTCCATTGTCGAATTTTAAAGAAAGCAAAGCAGTAATGCTGGAGGGTCACTaGACTGATCTGAAGTTCAGG | + |
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Preference number: 4 (lower is better) Translates to: ANFQVVLPLSNFKESKAVMLEGH*TDLKFR Trigger: CCTGAACTTCAGATCAGTGCAGTGACCCTCCAGCAT...TACTGCTTTGCTTTCTTTAAAATTCGACAATGGAAGGACTACTTGGAAATTAGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057488.15 |
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| CDS-3UTR GCA 90 bp | ACATTTGTGCTTTTTAATAGCTTTGGAAGAGCTAATTTCCAAGTAGTCCTTCCATCAGACACATTGTTCTaGTCCCAGTGGCATGTGCTC | + |
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Preference number: 4 (lower is better) Translates to: TFVLFNSFGRANFQVVLPSDTLF*SQWHVL Trigger: GAGCACATGCCACTGGGAGCAGAACAATGTGTCTGA...TGGAAGGACTACTTGGAAATTAGCTCTTCCAAAGCTATTAAAAAGCACAAATGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057488.15 |
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| CDS-3UTR TCA 90 bp | ACATTTGTGCTTTTTAATAGCTTTGGAAGAGCTAATTTCCAAGTAGTCCTTCCAAGTGCCATTGCTGTGTaGTTCACTCGTAGTGACACA | + |
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Preference number: 4 (lower is better) Translates to: TFVLFNSFGRANFQVVLPSAIAV*FTRSDT Trigger: TGTGTCACTACGAGTGAATCACACAGCAATGGCACT...TGGAAGGACTACTTGGAAATTAGCTCTTCCAAAGCTATTAAAAAGCACAAATGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057488.15 |
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| CDS-3UTR CCA 90 bp | AGTCACAGTATCATAGAGTGGATTGCTCTTCTCTGTATAGCTAGCATAAGGCTGAGCAGCTGGTTTCATTaGTCTTTGTATCTACTTTGT | + |
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Preference number: 4 (lower is better) Translates to: SHSIIEWIALLCIASIRLSSWFH*SLYLLC Trigger: ACAAAGTAGATACAAAGACCAATGAAACCAGCTGCT...CAGCCTTATGCTAGCTATACAGAGAAGAGCAATCCACTCTATGATACTGTGACT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000134625.2 |
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| CDS-3UTR GCA 90 bp | ACATTTGTGCTTTTTAATAGCTTTGGAAGAGCTAATTTCCAAGTAGTCCTTCCACATTGCCTCACAGACTaGAGATCTGTTTTTCTCTGG | + |
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Preference number: 4 (lower is better) Translates to: TFVLFNSFGRANFQVVLPHCLTD*RSVFLW Trigger: CCAGAGAAAAACAGATCTGCAGTCTGTGAGGCAATG...TGGAAGGACTACTTGGAAATTAGCTCTTCCAAAGCTATTAAAAAGCACAAATGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000057488.15 |
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| CDS-3UTR TCA 90 bp | GGAAGAGCTAATTTCCAAGTAGTCCTTCCATTGTCGAATTTTAAAGAAAGCAAATTGTGTCAGAGGAGATaGACTGTTGTTCTGTGTTGT | + |
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Preference number: 4 (lower is better) Translates to: GRANFQVVLPLSNFKESKLCQRR*TVVLCC Trigger: ACAACACAGAACAACAGTTCATCTCCTCTGACACAA...TTTGCTTTCTTTAAAATTCGACAATGGAAGGACTACTTGGAAATTAGCTCTTCC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057488.15 |
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| CDS-3UTR CCA 90 bp | ACATTTGTGCTTTTTAATAGCTTTGGAAGAGCTAATTTCCAAGTAGTCCTTCCACTCTACTCAGTTCTATaGACAGAGATTGGTTACCAG | + |
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Preference number: 4 (lower is better) Translates to: TFVLFNSFGRANFQVVLPLYSVL*TEIGYQ Trigger: CTGGTAACCAATCTCTGTCCATAGAACTGAGTAGAG...TGGAAGGACTACTTGGAAATTAGCTCTTCCAAAGCTATTAAAAAGCACAAATGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057488.15 |
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| 3UTR CAA 72 bp | CCATGTTGTGCAAACACTTTACACCTAACTGCCATTTaGTATCCTGAAACCCAATATAAAGCTAGGAATGTT | + |
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Preference number: 4 (lower is better) Translates to: PCCANTLHLTAI*YPETQYKARNV Trigger: AACATTCCTAGCTTTATATTGGGTTTCAGGATACAAAATGGCAGTTAGGTGTAAAGTGTTTGCACAACATGG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231633.2 |
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| CDS-3UTR GCA 90 bp | ACATTTGTGCTTTTTAATAGCTTTGGAAGAGCTAATTTCCAAGTAGTCCTTCCATCAAATGAGAGACAATaGAGGACACATCAGACACAT | + |
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Preference number: 4 (lower is better) Translates to: TFVLFNSFGRANFQVVLPSNERQ*RTHQTH Trigger: ATGTGTCTGATGTGTCCTGCATTGTCTCTCATTTGA...TGGAAGGACTACTTGGAAATTAGCTCTTCCAAAGCTATTAAAAAGCACAAATGT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057488.15 |
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| CDS-3UTR CCA 90 bp | GGAAGAGCTAATTTCCAAGTAGTCCTTCCATTGTCGAATTTTAAAGAAAGCAAATACTGCTTTTGTCAGTaGAATAGAAAAGCAGCAGAG | + |
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Preference number: 4 (lower is better) Translates to: GRANFQVVLPLSNFKESKYCFCQ*NRKAAE Trigger: CTCTGCTGCTTTTCTATTCCACTGACAAAAGCAGTA...TTTGCTTTCTTTAAAATTCGACAATGGAAGGACTACTTGGAAATTAGCTCTTCC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000057488.15 |
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| CDS-3UTR CCA 90 bp | GGAAGAGCTAATTTCCAAGTAGTCCTTCCATTGTCGAATTTTAAAGAAAGCAAATATGGTCGTAATGATTaGTTACCACCTCTACTCAGT | + |
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Preference number: 4 (lower is better) Translates to: GRANFQVVLPLSNFKESKYGRND*LPPLLS Trigger: ACTGAGTAGAGGTGGTAACCAATCATTACGACCATA...TTTGCTTTCTTTAAAATTCGACAATGGAAGGACTACTTGGAAATTAGCTCTTCC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057488.15 |
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| CDS-3UTR CCA 90 bp | GCTAATTTCCAAGTAGTCCTTCCATTGTCGAATTTTAAAGAAAGCAAAGCAGTAAGCAGCTGGTTTCATTaGTCTTTGTATCTACTTTGT | + |
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Preference number: 4 (lower is better) Translates to: ANFQVVLPLSNFKESKAVSSWFH*SLYLLC Trigger: ACAAAGTAGATACAAAGACCAATGAAACCAGCTGCT...TACTGCTTTGCTTTCTTTAAAATTCGACAATGGAAGGACTACTTGGAAATTAGC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057488.15 |
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| CDS-3UTR CCA 90 bp | GGAAGAGCTAATTTCCAAGTAGTCCTTCCATTGTCGAATTTTAAAGAAAGCAAAAGATCTGTTTTTCTCTaGAAAGTAGGTTACTTCAGG | + |
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Preference number: 4 (lower is better) Translates to: GRANFQVVLPLSNFKESKRSVFL*KVGYFR Trigger: CCTGAAGTAACCTACTTTCCAGAGAAAAACAGATCT...TTTGCTTTCTTTAAAATTCGACAATGGAAGGACTACTTGGAAATTAGCTCTTCC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000057488.15 |
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| CDS-3UTR CCA 90 bp | ACATTTGTGCTTTTTAATAGCTTTGGAAGAGCTAATTTCCAAGTAGTCCTTCCACACAGTATCATAGAGTaGATTGCTCTTCTCTGTATA | + |
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Preference number: 4 (lower is better) Translates to: TFVLFNSFGRANFQVVLPHSIIE*IALLCI Trigger: TATACAGAGAAGAGCAATCCACTCTATGATACTGTG...TGGAAGGACTACTTGGAAATTAGCTCTTCCAAAGCTATTAAAAAGCACAAATGT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057488.15 |
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| CDS-3UTR CAA 90 bp | AATCAGGTGGCCAGAAAGATCATGAGCTCCGGAGGAGAGGTGGTACCGGTCTTCCTACTTTGTATGCTATaGTGCAGGATGGCAGGCCTC | + |
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Preference number: 5 (lower is better) Translates to: NQVARKIMSSGGEVVPVFLLCML*CRMAGL Trigger: GAGGCCTGCCATCCTGCACAATAGCATACAAAGTAG...GAAGACCGGTACCACCTCTCCTCCGGAGCTCATGATCTTTCTGGCCACCTGATT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000134625.2 |
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| CDS-3UTR CAA 90 bp | ATTGGTTACCCAAAATCAGGTGGCCAGAAAGATCATGAGCTCCGGAGGAGAGGTATCTGTGCAGCAGGCTaGCCTGCCATTGCCTCACAG | + |
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Preference number: 5 (lower is better) Translates to: IGYPKSGGQKDHELRRRGICAAG*PAIASQ Trigger: CTGTGAGGCAATGGCAGGCAAGCCTGCTGCACAGAT...ACCTCTCCTCCGGAGCTCATGATCTTTCTGGCCACCTGATTTTGGGTAACCAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000134625.2 |
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| CDS-3UTR CAA 90 bp | GTGGCCAGAAAGATCATGAGCTCCGGAGGAGAGGTGGTACCGGTCTTCTACTGTACAGTCACAGTGCCATaGCTGTGTGATTCACTCGTA | + |
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Preference number: 5 (lower is better) Translates to: VARKIMSSGGEVVPVFYCTVTVP*LCDSLV Trigger: TACGAGTGAATCACACAGCAATGGCACTGTGACTGT...ACAGTAGAAGACCGGTACCACCTCTCCTCCGGAGCTCATGATCTTTCTGGCCAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000134625.2 |
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| CDS-3UTR CAA 90 bp | CAAAATCAGGTGGCCAGAAAGATCATGAGCTCCGGAGGAGAGGTGGTACCGGTCTTCTATGGACAGAGATaGGTTACCAGTCAAATGAGA | + |
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Preference number: 5 (lower is better) Translates to: QNQVARKIMSSGGEVVPVFYGQR*VTSQMR Trigger: TCTCATTTGACTGGTAACCAATCTCTGTCCATAGAA...GACCGGTACCACCTCTCCTCCGGAGCTCATGATCTTTCTGGCCACCTGATTTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000134625.2 |
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| CDS TCA 90 bp | CCACCTCTACTCAGTTCTATGGACAGAGATTGGTTACCAGTCAAATaGGAGACAATGCAGGACACATCAGACACATTGTTCTGCTCCCAG | + |
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Preference number: 5 (lower is better) Translates to: PPLLSSMDRDWLPVK*ETMQDTSDTLFCSQ Trigger: CTGGGAGCAGAACAATGTGTCTGATGTGTCCTGCATTGTCTCTCATTTGACTGGTAACCAATCTCTGTCCATAGAACTGAGTAGAGGTGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000057488.15 ENSMUST00000134625.2 |
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| CDS-3UTR CAA 90 bp | GTGCTTTTTAATAGCTTTGGAAGAGCTAATTTCCAAGTAGTCCTTCCATTGTCGATCTGTGCAGCAGGCTaGCCTGCCATTGCCTCACAG | + |
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Preference number: 5 (lower is better) Translates to: VLFNSFGRANFQVVLPLSICAAG*PAIASQ Trigger: CTGTGAGGCAATGGCAGGCAAGCCTGCTGCACAGAT...CGACAATGGAAGGACTACTTGGAAATTAGCTCTTCCAAAGCTATTAAAAAGCAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057488.15 |
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| CDS-3UTR CAA 90 bp | ATTGGTTACCCAAAATCAGGTGGCCAGAAAGATCATGAGCTCCGGAGGAGAGGTGTCTTTGTATCTACTTaGTATGCTATTGTGCAGGAT | + |
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Preference number: 5 (lower is better) Translates to: IGYPKSGGQKDHELRRRGVFVST*YAIVQD Trigger: ATCCTGCACAATAGCATACAAAGTAGATACAAAGAC...ACCTCTCCTCCGGAGCTCATGATCTTTCTGGCCACCTGATTTTGGGTAACCAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000134625.2 |
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| CDS-3UTR CAA 90 bp | ACATTTGTGCTTTTTAATAGCTTTGGAAGAGCTAATTTCCAAGTAGTCCTTCCACTACTTTGTATGCTATaGTGCAGGATGGCAGGCCTC | + |
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Preference number: 5 (lower is better) Translates to: TFVLFNSFGRANFQVVLPLLCML*CRMAGL Trigger: GAGGCCTGCCATCCTGCACAATAGCATACAAAGTAG...TGGAAGGACTACTTGGAAATTAGCTCTTCCAAAGCTATTAAAAAGCACAAATGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057488.15 |
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| CDS-3UTR CAA 90 bp | GGAAGAGCTAATTTCCAAGTAGTCCTTCCATTGTCGAATTTTAAAGAAAGCAAAACAGTCACAGTGCCATaGCTGTGTGATTCACTCGTA | + |
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Preference number: 5 (lower is better) Translates to: GRANFQVVLPLSNFKESKTVTVP*LCDSLV Trigger: TACGAGTGAATCACACAGCAATGGCACTGTGACTGT...TTTGCTTTCTTTAAAATTCGACAATGGAAGGACTACTTGGAAATTAGCTCTTCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057488.15 |
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| CDS-3UTR CAA 90 bp | GTGCTTTTTAATAGCTTTGGAAGAGCTAATTTCCAAGTAGTCCTTCCATTGTCGAAGCAGCTGGTTTCATaGGTCTTTGTATCTACTTTG | + |
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Preference number: 5 (lower is better) Translates to: VLFNSFGRANFQVVLPLSKQLVS*VFVSTL Trigger: CAAAGTAGATACAAAGACCAATGAAACCAGCTGCTT...CGACAATGGAAGGACTACTTGGAAATTAGCTCTTCCAAAGCTATTAAAAAGCAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057488.15 |
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| CDS-3UTR CAA 90 bp | GTGCTTTTTAATAGCTTTGGAAGAGCTAATTTCCAAGTAGTCCTTCCATTGTCGGTCTTTGTATCTACTTaGTATGCTATTGTGCAGGAT | + |
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Preference number: 5 (lower is better) Translates to: VLFNSFGRANFQVVLPLSVFVST*YAIVQD Trigger: ATCCTGCACAATAGCATACAAAGTAGATACAAAGAC...CGACAATGGAAGGACTACTTGGAAATTAGCTCTTCCAAAGCTATTAAAAAGCAC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057488.15 |
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| CDS-3UTR CAA 90 bp | ACATTTGTGCTTTTTAATAGCTTTGGAAGAGCTAATTTCCAAGTAGTCCTTCCATTCTATGGACAGAGATaGGTTACCAGTCAAATGAGA | + |
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Preference number: 5 (lower is better) Translates to: TFVLFNSFGRANFQVVLPFYGQR*VTSQMR Trigger: TCTCATTTGACTGGTAACCAATCTCTGTCCATAGAA...TGGAAGGACTACTTGGAAATTAGCTCTTCCAAAGCTATTAAAAAGCACAAATGT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057488.15 |
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| CDS-3UTR CAA 90 bp | GGAAGAGCTAATTTCCAAGTAGTCCTTCCATTGTCGAATTTTAAAGAAAGCAAATCTAATTTTGGCAATTaGCATTTTCTGAAGCCACTG | + |
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Preference number: 5 (lower is better) Translates to: GRANFQVVLPLSNFKESKSNFGN*HFLKPL Trigger: CAGTGGCTTCAGAAAATGCAAATTGCCAAAATTAGA...TTTGCTTTCTTTAAAATTCGACAATGGAAGGACTACTTGGAAATTAGCTCTTCC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000057488.15 |
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| CDS TCA 72 bp | TGTGTCAGAGGAGATGAACTGTTGTTCTGTGTTGTTTaGTTCTTATCAGTACAACTTGACCCAGCCACAAAG | + |
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Preference number: 6 (lower is better) Translates to: CVRGDELLFCVV*FLSVQLDPATK Trigger: CTTTGTGGCTGGGTCAAGTTGTACTGATAAGAATCAAACAACACAGAACAACAGTTCATCTCCTCTGACACA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000057488.15 ENSMUST00000134625.2 |
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| CDS CCA 72 bp | GTCGTAATGATTGGTTACCACCTCTACTCAGTTCTATaGACAGAGATTGGTTACCAGTCAAATGAGAGACAA | + |
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Preference number: 6 (lower is better) Translates to: VVMIGYHLYSVL*TEIGYQSNERQ Trigger: TTGTCTCTCATTTGACTGGTAACCAATCTCTGTCCATAGAACTGAGTAGAGGTGGTAACCAATCATTACGAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057488.15 |
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| CDS CCA 72 bp | TTAATGCTGCTTTCAGTCCACCTCTACTCAGTTCTATaGACAGAGATTGGTTACCAGTCAAATGAGAGACAA | + |
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Preference number: 6 (lower is better) Translates to: LMLLSVHLYSVL*TEIGYQSNERQ Trigger: TTGTCTCTCATTTGACTGGTAACCAATCTCTGTCCATAGAACTGAGTAGAGGTGGACTGAAAGCAGCATTAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000134625.2 |
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| CDS CCA 72 bp | GATGGTATGATGTATGGAATATATGGTCGTAATGATTaGTTACCACCTCTACTCAGTTCTATGGACAGAGAT | + |
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Preference number: 6 (lower is better) Translates to: DGMMYGIYGRND*LPPLLSSMDRD Trigger: ATCTCTGTCCATAGAACTGAGTAGAGGTGGTAACCAATCATTACGACCATATATTCCATACATCATACCATC 39% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057488.15 |
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