Pregenerated sensors for CD2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000027863

Ensembl transcript IDs: ENSMUST00000029456.5

Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	CTCGGGGTCTGGGTAAAGGAGGGCCTTTCTGCTGGTGAATCTGTGTaGCTGATGGAGGAGGTCTCTTCTTCTGCTGGTGCTCACGGGTAC	+
Preference number: 5 (lower is better) Translates to: LGVWVKEGLSAGESV*LMEEVSSSAGAHGY Trigger: GTACCCGTGAGCACCAGCAGAAGAAGAGACCTCCTCCATCAGGCACACAGATTCACCAGCAGAAAGGCCCTCCTTTACCCAGACCCCGAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029456.5
CDS CCA 90 bp	GTTCAAAATCTGTCCCTTGCAAGACCGCACAGGTCAGGGTTGTGTTaGGGCATTCCCAGTGGATCATGGGCTTTGAGACCCTCTCCAGAA	+
Preference number: 5 (lower is better) Translates to: VQNLSLARPHRSGLC*GIPSGSWALRPSPE Trigger: TTCTGGAGAGGGTCTCAAAGCCCATGATCCACTGGGAATGCCCCAACACAACCCTGACCTGTGCGGTCTTGCAAGGGACAGATTTTGAAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029456.5
CDS CCA 90 bp	TCCTGCACCGACCCCCACTGTGACATAGAAGGACAGACCTTTCTCTaGACAGTTAACAACTTCCATCTTAGACTCCTTGCTGACCGGGTT	+
Preference number: 5 (lower is better) Translates to: SCTDPHCDIEGQTFL*TVNNFHLRLLADRV Trigger: AACCCGGTCAGCAAGGAGTCTAAGATGGAAGTTGTTAACTGTCCAGAGAAAGGTCTGTCCTTCTATGTCACAGTGGGGGTCGGTGCAGGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029456.5
CDS GCA 72 bp	CCAGGTGGAGGAGGAGCTTGGAGCGCCACTGAATTCTaGGCTGCTGCGGCTGGGGTTGAGTGCGGCTTGGGG	+
Preference number: 6 (lower is better) Translates to: PGGGGAWSATEF*AAAAGVECGLG Trigger: CCCCAAGCCGCACTCAACCCCAGCCGCAGCAGCGCAGAATTCAGTGGCGCTCCAAGCTCCTCCTCCACCTGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029456.5
CDS CCA 72 bp	GGAGGTCTCTTCTTCTGCTGGTGCTCACGGGTACGGTaGCCTGGAGGCAAGGGACGATGGCCAGGTGTCTGG	+
Preference number: 6 (lower is better) Translates to: GGLFFCWCSRVR*PGGKGRWPGVW Trigger: CCAGACACCTGGCCATCGTCCCTTGCCTCCAGGCCACCGTACCCGTGAGCACCAGCAGAAGAAGAGACCTCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029456.5
CDS GCA 72 bp	TGTGTGCCTGATGGAGGAGGTCTCTTCTTCTGCTGGTaGTCACGGGTACGGTGGCCTGGAGGCAAGGGACGA	+
Preference number: 6 (lower is better) Translates to: CVPDGGGLFFCW*SRVRWPGGKGR Trigger: TCGTCCCTTGCCTCCAGGCCACCGTACCCGTGAGCACCAGCAGAAGAAGAGACCTCCTCCATCAGGCACACA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029456.5
CDS CCA 72 bp	CTGTCCCTTGCAAGACCGCACAGGTCAGGGTTGTGTTaGGGCATTCCCAGTGGATCATGGGCTTTGAGACCC	+
Preference number: 6 (lower is better) Translates to: LSLARPHRSGLC*GIPSGSWALRP Trigger: GGGTCTCAAAGCCCATGATCCACTGGGAATGCCCCAACACAACCCTGACCTGTGCGGTCTTGCAAGGGACAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029456.5
CDS GCA 72 bp	AAAAAGCGCCACCAAGAGCACCAAGAGGAGTCCTCCTaGACCGACCCCCACTGTGACATAGAAGGACAGACC	+
Preference number: 6 (lower is better) Translates to: KKRHQEHQEESS*TDPHCDIEGQT Trigger: GGTCTGTCCTTCTATGTCACAGTGGGGGTCGGTGCAGGAGGACTCCTCTTGGTGCTCTTGGTGGCGCTTTTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000029456.5
CDS CCA 72 bp	CACTCCCACAGGGAGGTTTTGGCTGAACTCGGGGTCTaGGTAAAGGAGGGCCTTTCTGCTGGTGAATCTGTG	+
Preference number: 6 (lower is better) Translates to: HSHREVLAELGV*VKEGLSAGESV Trigger: CACAGATTCACCAGCAGAAAGGCCCTCCTTTACCCAGACCCCGAGTTCAGCCAAAACCTCCCTGTGGGAGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029456.5
CDS CAA 72 bp	CCCCAGATGGTCTCATTGTCTCTGCAGTCCGCCCCTTaGCCGGAAAGGCTGAAGAGCAGAAAGAAGCTACCC	+
Preference number: 6 (lower is better) Translates to: PQMVSLSLQSAP*PERLKSRKKLP Trigger: GGGTAGCTTCTTTCTGCTCTTCAGCCTTTCCGGCAAAGGGGCGGACTGCAGAGACAATGAGACCATCTGGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029456.5
CDS CAA 72 bp	GCAGTGAAACACCATCTCCACTCCCACAGGGAGGTTTaGGCTGAACTCGGGGTCTGGGTAAAGGAGGGCCTT	+
Preference number: 6 (lower is better) Translates to: AVKHHLHSHREV*AELGVWVKEGL Trigger: AAGGCCCTCCTTTACCCAGACCCCGAGTTCAGCCAAAACCTCCCTGTGGGAGTGGAGATGGTGTTTCACTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029456.5
CDS TCA 72 bp	ACTCGGGGTCTGGGTAAAGGAGGGCCTTTCTGCTGGTaGATCTGTGTGCCTGATGGAGGAGGTCTCTTCTTC	+
Preference number: 6 (lower is better) Translates to: TRGLGKGGPFCW*ICVPDGGGLFF Trigger: GAAGAAGAGACCTCCTCCATCAGGCACACAGATTCACCAGCAGAAAGGCCCTCCTTTACCCAGACCCCGAGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029456.5
CDS CAA 72 bp	CAAAATCTGTCCCTTGCAAGACCGCACAGGTCAGGGTaGTGTTGGGGCATTCCCAGTGGATCATGGGCTTTG	+
Preference number: 6 (lower is better) Translates to: QNLSLARPHRSG*CWGIPSGSWAL Trigger: CAAAGCCCATGATCCACTGGGAATGCCCCAACACAACCCTGACCTGTGCGGTCTTGCAAGGGACAGATTTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029456.5
CDS CAA 90 bp	CCCAAGACACCCCAGATGGTCTCATTGTCTCTGCAGTCCGCCCCTTaGCCGGAAAGGCTGAAGAGCAGAAAGAAGCTACCCAGGAATTTA	+
Preference number: 6 (lower is better) Translates to: PKTPQMVSLSLQSAP*PERLKSRKKLPRNL Trigger: TAAATTCCTGGGTAGCTTCTTTCTGCTCTTCAGCCTTTCCGGCAAAGGGGCGGACTGCAGAGACAATGAGACCATCTGGGGTGTCTTGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029456.5
CDS CAA 90 bp	GCTTCAGTTCAAAATCTGTCCCTTGCAAGACCGCACAGGTCAGGGTaGTGTTGGGGCATTCCCAGTGGATCATGGGCTTTGAGACCCTCT	+
Preference number: 6 (lower is better) Translates to: ASVQNLSLARPHRSG*CWGIPSGSWALRPS Trigger: AGAGGGTCTCAAAGCCCATGATCCACTGGGAATGCCCCAACACAACCCTGACCTGTGCGGTCTTGCAAGGGACAGATTTTGAACTGAAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029456.5
CDS CAA 90 bp	GGTGCCCCTCCTTACCCATCGCACCTCATCAATATCATCAGTCATTaGAAAGTTGGGGATGTTCAGGGTGATGCCATGACCCAAGACACC	+
Preference number: 6 (lower is better) Translates to: GAPPYPSHLINIISH*KVGDVQGDAMTQDT Trigger: GGTGTCTTGGGTCATGGCATCACCCTGAACATCCCCAACTTTCAAATGACTGATGATATTGATGAGGTGCGATGGGTAAGGAGGGGCACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029456.5
CDS CAA 90 bp	GACAGACCTTTCTCTGGACAGTTAACAACTTCCATCTTAGACTCCTaGCTGACCGGGTTTATCGCCTCACACTTGAATGGTGCGTTCAGG	+
Preference number: 6 (lower is better) Translates to: DRPFSGQLTTSILDS*LTGFIASHLNGAFR Trigger: CCTGAACGCACCATTCAAGTGTGAGGCGATAAACCCGGTCAGCAAGGAGTCTAAGATGGAAGTTGTTAACTGTCCAGAGAAAGGTCTGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029456.5
CDS TCA 72 bp	TATCATCAGTCATTTGAAAGTTGGGGATGTTCAGGGTaGTGCCATGACCCAAGACACCCCAGATGGTCTCAT	+
Preference number: 6 (lower is better) Translates to: YHQSFESWGCSG*CHDPRHPRWSH Trigger: ATGAGACCATCTGGGGTGTCTTGGGTCATGGCATCACCCTGAACATCCCCAACTTTCAAATGACTGATGATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029456.5
CDS CCA 72 bp	GACCCCCACTGTGACATAGAAGGACAGACCTTTCTCTaGACAGTTAACAACTTCCATCTTAGACTCCTTGCT	+
Preference number: 6 (lower is better) Translates to: DPHCDIEGQTFL*TVNNFHLRLLA Trigger: AGCAAGGAGTCTAAGATGGAAGTTGTTAACTGTCCAGAGAAAGGTCTGTCCTTCTATGTCACAGTGGGGGTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029456.5
CDS CAA 72 bp	CCTTACCCATCGCACCTCATCAATATCATCAGTCATTaGAAAGTTGGGGATGTTCAGGGTGATGCCATGACC	+
Preference number: 6 (lower is better) Translates to: PYPSHLINIISH*KVGDVQGDAMT Trigger: GGTCATGGCATCACCCTGAACATCCCCAACTTTCAAATGACTGATGATATTGATGAGGTGCGATGGGTAAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029456.5
CDS CAA 72 bp	TTCTCTGGACAGTTAACAACTTCCATCTTAGACTCCTaGCTGACCGGGTTTATCGCCTCACACTTGAATGGT	+
Preference number: 6 (lower is better) Translates to: FSGQLTTSILDS*LTGFIASHLNG Trigger: ACCATTCAAGTGTGAGGCGATAAACCCGGTCAGCAAGGAGTCTAAGATGGAAGTTGTTAACTGTCCAGAGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029456.5
CDS GCA 72 bp	TCATCCCATTTGTGCCATACACCATTACATTATAGGTaGCACTGTCGTTTCTCATCATCGGCTTCTTTATCT	+
Preference number: 6 (lower is better) Translates to: SSHLCHTPLHYR*HCRFSSSASLS Trigger: AGATAAAGAAGCCGATGATGAGAAACGACAGTGGCACCTATAATGTAATGGTGTATGGCACAAATGGGATGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029456.5

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