RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CD1D2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000041750

Ensembl transcript IDs: ENSMUST00000041920.5, ENSMUST00000192481.2, ENSMUST00000194208.6

Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR GCA 90 bp CTTTTAAGATCACTAGTATTCAAGAGCACAGACACCACCCCCACCTCACTCCGCAAGGAGCATACTGGTTaGTCTTCACTTCTTCAGGAT +
Preference number: 2 (lower is better)
Translates to: LLRSLVFKSTDTTPTSLRKEHTG*SSLLQD
Trigger: ATCCTGAAGAAGTGAAGAGCAACCAGTATGCTCCTT...GCGGAGTGAGGTGGGGGTGGTGTCTGTGCTCTTGAATACTAGTGATCTTAAAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000194208.6
3UTR-3UTR CAA 90 bp CTACTTTTAAGATCACTAGTATTCAAGAGCACAGACACCACCCCCACCTCACTCAAAGGAGCATACTGGTaGCTCTTCACTTCTTCAGGA +
Preference number: 3 (lower is better)
Translates to: LLLRSLVFKSTDTTPTSLKGAYW*LFTSSG
Trigger: TCCTGAAGAAGTGAAGAGCAACCAGTATGCTCCTTT...GAGTGAGGTGGGGGTGGTGTCTGTGCTCTTGAATACTAGTGATCTTAAAAGTAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000194208.6
CDS-3UTR CCA 90 bp GGTTGCTCTTCACTTCTTCAGGATTCCTCTCTTTCATCCCCAGATCCTGAGCAGGGCCATGTGCAGAGCTaGGGACACTGGACAACCAGG +
Preference number: 4 (lower is better)
Translates to: GCSSLLQDSSLSSPDPEQGHVQS*GHWTTR
Trigger: CCTGGTTGTCCAGTGTCCCCAGCTCTGCACATGGCC...CTGCTCAGGATCTGGGGATGAAAGAGAGGAATCCTGAAGAAGTGAAGAGCAACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041920.5
ENSMUST00000192481.2
ENSMUST00000194208.6
CDS-3UTR GCA 90 bp GGTTGCTCTTCACTTCTTCAGGATTCCTCTCTTTCATCCCCAGATCCTGAGCAGCTGCAGATGGCCATGTaGAGAGCTGGGGACACTGGA +
Preference number: 4 (lower is better)
Translates to: GCSSLLQDSSLSSPDPEQLQMAM*RAGDTG
Trigger: TCCAGTGTCCCCAGCTCTGCACATGGCCATCTGCAG...CTGCTCAGGATCTGGGGATGAAAGAGAGGAATCCTGAAGAAGTGAAGAGCAACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041920.5
ENSMUST00000192481.2
ENSMUST00000194208.6
CDS-3UTR CCA 90 bp GCATACTGGTTGCTCTTCACTTCTTCAGGATTCCTCTCTTTCATCCCCAGATCCCAGAGCTGGGGACACTaGACAACCAGGCCACTGGCT +
Preference number: 4 (lower is better)
Translates to: AYWLLFTSSGFLSFIPRSQSWGH*TTRPLA
Trigger: AGCCAGTGGCCTGGTTGTCCAGTGTCCCCAGCTCTG...GGATCTGGGGATGAAAGAGAGGAATCCTGAAGAAGTGAAGAGCAACCAGTATGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041920.5
ENSMUST00000192481.2
ENSMUST00000194208.6
CDS-3UTR CCA 90 bp CATACTGGTTGCTCTTCACTTCTTCAGGATTCCTCTCTTTCATCCCCAGATCCTCAGAGCTGGGGACACTaGACAACCAGGCCACTGGCT +
Preference number: 4 (lower is better)
Translates to: HTGCSSLLQDSSLSSPDPQSWGH*TTRPLA
Trigger: AGCCAGTGGCCTGGTTGTCCAGTGTCCCCAGCTCTG...AGGATCTGGGGATGAAAGAGAGGAATCCTGAAGAAGTGAAGAGCAACCAGTATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041920.5
ENSMUST00000192481.2
ENSMUST00000194208.6
CDS-3UTR CCA 90 bp CTACTTTTAAGATCACTAGTATTCAAGAGCACAGACACCACCCCCACCTCACTCCAGAGCTGGGGACACTaGACAACCAGGCCACTGGCT +
Preference number: 4 (lower is better)
Translates to: LLLRSLVFKSTDTTPTSLQSWGH*TTRPLA
Trigger: AGCCAGTGGCCTGGTTGTCCAGTGTCCCCAGCTCTG...GAGTGAGGTGGGGGTGGTGTCTGTGCTCTTGAATACTAGTGATCTTAAAAGTAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000194208.6
CDS-3UTR CCA 90 bp AGCATACTGGTTGCTCTTCACTTCTTCAGGATTCCTCTCTTTCATCCCCAGATCGGCCATGTGCAGAGCTaGGGACACTGGACAACCAGG +
Preference number: 4 (lower is better)
Translates to: SILVALHFFRIPLFHPQIGHVQS*GHWTTR
Trigger: CCTGGTTGTCCAGTGTCCCCAGCTCTGCACATGGCC...GATCTGGGGATGAAAGAGAGGAATCCTGAAGAAGTGAAGAGCAACCAGTATGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041920.5
ENSMUST00000192481.2
ENSMUST00000194208.6
CDS-3UTR CCA 90 bp AGCATACTGGTTGCTCTTCACTTCTTCAGGATTCCTCTCTTTCATCCCCAGATCCACACCAGCTGCAGATaGCCATGTGCAGAGCTGGGG +
Preference number: 4 (lower is better)
Translates to: SILVALHFFRIPLFHPQIHTSCR*PCAELG
Trigger: CCCCAGCTCTGCACATGGCCATCTGCAGCTGGTGTG...GATCTGGGGATGAAAGAGAGGAATCCTGAAGAAGTGAAGAGCAACCAGTATGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041920.5
ENSMUST00000192481.2
ENSMUST00000194208.6
CDS-3UTR GCA 90 bp GCATACTGGTTGCTCTTCACTTCTTCAGGATTCCTCTCTTTCATCCCCAGATCCCTCCAACGGTGTGTCTaGAGATCCCCCAGCAAGATC +
Preference number: 4 (lower is better)
Translates to: AYWLLFTSSGFLSFIPRSLQRCV*RSPSKI
Trigger: GATCTTGCTGGGGGATCTGCAGACACACCGTTGGAG...GGATCTGGGGATGAAAGAGAGGAATCCTGAAGAAGTGAAGAGCAACCAGTATGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000041920.5
ENSMUST00000192481.2
ENSMUST00000194208.6
CDS-3UTR GCA 90 bp GGAGCATACTGGTTGCTCTTCACTTCTTCAGGATTCCTCTCTTTCATCCCCAGACTCCAACGGTGTGTCTaGAGATCCCCCAGCAAGATC +
Preference number: 4 (lower is better)
Translates to: GAYWLLFTSSGFLSFIPRLQRCV*RSPSKI
Trigger: GATCTTGCTGGGGGATCTGCAGACACACCGTTGGAG...TCTGGGGATGAAAGAGAGGAATCCTGAAGAAGTGAAGAGCAACCAGTATGCTCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000041920.5
ENSMUST00000192481.2
ENSMUST00000194208.6
CDS-3UTR TCA 90 bp GGAGCATACTGGTTGCTCTTCACTTCTTCAGGATTCCTCTCTTTCATCCCCAGAGAAGCTGATGATGGCTaGGTCATTACTCCAACGGTG +
Preference number: 4 (lower is better)
Translates to: GAYWLLFTSSGFLSFIPREADDG*VITPTV
Trigger: CACCGTTGGAGTAATGACTCAGCCATCATCAGCTTC...TCTGGGGATGAAAGAGAGGAATCCTGAAGAAGTGAAGAGCAACCAGTATGCTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041920.5
ENSMUST00000192481.2
ENSMUST00000194208.6
CDS-3UTR TCA 90 bp ACTTTTAAGATCACTAGTATTCAAGAGCACAGACACCACCCCCACCTCACTCCGGAAGCTGATGATGGCTaGGTCATTACTCCAACGGTG +
Preference number: 4 (lower is better)
Translates to: TFKITSIQEHRHHPHLTPEADDG*VITPTV
Trigger: CACCGTTGGAGTAATGACTCAGCCATCATCAGCTTC...CGGAGTGAGGTGGGGGTGGTGTCTGTGCTCTTGAATACTAGTGATCTTAAAAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000194208.6
CDS-3UTR TCA 90 bp AGCATACTGGTTGCTCTTCACTTCTTCAGGATTCCTCTCTTTCATCCCCAGATCCATCCCAGTAGAGGATaGTATCCTGTCCTCCTAGGC +
Preference number: 4 (lower is better)
Translates to: SILVALHFFRIPLFHPQIHPSRG*YPVLLG
Trigger: GCCTAGGAGGACAGGATATCATCCTCTACTGGGATG...GATCTGGGGATGAAAGAGAGGAATCCTGAAGAAGTGAAGAGCAACCAGTATGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041920.5
ENSMUST00000192481.2
ENSMUST00000194208.6
CDS-3UTR CCA 90 bp GGCTGCAGGGAAACCGCAGGCTCTCCTACTTTTAAGATCACTAGTATTCAAGAGTTACTCAACTTGCCCTaGGACCATGGCTTCGTGAAG +
Preference number: 4 (lower is better)
Translates to: GCRETAGSPTFKITSIQELLNLP*DHGFVK
Trigger: CTTCACGAAGCCATGGTCCCAGGGCAAGTTGAGTAA...CTCTTGAATACTAGTGATCTTAAAAGTAGGAGAGCCTGCGGTTTCCCTGCAGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194208.6
CDS-3UTR CCA 90 bp AAATTTAAAGGAGCATACTGGTTGCTCTTCACTTCTTCAGGATTCCTCTCTTTCGGCCATGTGCAGAGCTaGGGACACTGGACAACCAGG +
Preference number: 4 (lower is better)
Translates to: KFKGAYWLLFTSSGFLSFGHVQS*GHWTTR
Trigger: CCTGGTTGTCCAGTGTCCCCAGCTCTGCACATGGCC...GAAAGAGAGGAATCCTGAAGAAGTGAAGAGCAACCAGTATGCTCCTTTAAATTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041920.5
ENSMUST00000192481.2
ENSMUST00000194208.6
CDS-3UTR CCA 90 bp ATTCCTAAATTTAAAGGAGCATACTGGTTGCTCTTCACTTCTTCAGGATTCCTCCACACCAGCTGCAGATaGCCATGTGCAGAGCTGGGG +
Preference number: 4 (lower is better)
Translates to: IPKFKGAYWLLFTSSGFLHTSCR*PCAELG
Trigger: CCCCAGCTCTGCACATGGCCATCTGCAGCTGGTGTG...GAGGAATCCTGAAGAAGTGAAGAGCAACCAGTATGCTCCTTTAAATTTAGGAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041920.5
ENSMUST00000192481.2
ENSMUST00000194208.6
CDS-3UTR CCA 90 bp AAATTTAAAGGAGCATACTGGTTGCTCTTCACTTCTTCAGGATTCCTCTCTTTCCACACCAGCTGCAGATaGCCATGTGCAGAGCTGGGG +
Preference number: 4 (lower is better)
Translates to: KFKGAYWLLFTSSGFLSFHTSCR*PCAELG
Trigger: CCCCAGCTCTGCACATGGCCATCTGCAGCTGGTGTG...GAAAGAGAGGAATCCTGAAGAAGTGAAGAGCAACCAGTATGCTCCTTTAAATTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041920.5
ENSMUST00000192481.2
ENSMUST00000194208.6
CDS-3UTR GCA 90 bp TTCCTAAATTTAAAGGAGCATACTGGTTGCTCTTCACTTCTTCAGGATTCCTCTCTGCAGATGGCCATGTaGAGAGCTGGGGACACTGGA +
Preference number: 4 (lower is better)
Translates to: FLNLKEHTGCSSLLQDSSLQMAM*RAGDTG
Trigger: TCCAGTGTCCCCAGCTCTGCACATGGCCATCTGCAG...AGAGGAATCCTGAAGAAGTGAAGAGCAACCAGTATGCTCCTTTAAATTTAGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041920.5
ENSMUST00000192481.2
ENSMUST00000194208.6
CDS-3UTR CCA 90 bp ATTCCTAAATTTAAAGGAGCATACTGGTTGCTCTTCACTTCTTCAGGATTCCTCAGACCACGGGCAAACTaGGGCCAGGTGTCATTCAGG +
Preference number: 4 (lower is better)
Translates to: IPKFKGAYWLLFTSSGFLRPRAN*GQVSFR
Trigger: CCTGAATGACACCTGGCCCCAGTTTGCCCGTGGTCT...GAGGAATCCTGAAGAAGTGAAGAGCAACCAGTATGCTCCTTTAAATTTAGGAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041920.5
ENSMUST00000192481.2
ENSMUST00000194208.6
CDS-3UTR CCA 90 bp GCATACTGGTTGCTCTTCACTTCTTCAGGATTCCTCTCTTTCATCCCCAGATCCTGTCTCATCAGCATTTaGCAGGAAATCACCTCTGTG +
Preference number: 4 (lower is better)
Translates to: AYWLLFTSSGFLSFIPRSCLISI*QEITSV
Trigger: CACAGAGGTGATTTCCTGCCAAATGCTGATGAGACA...GGATCTGGGGATGAAAGAGAGGAATCCTGAAGAAGTGAAGAGCAACCAGTATGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041920.5
ENSMUST00000192481.2
ENSMUST00000194208.6
CDS-3UTR GCA 90 bp ATATTCCTAAATTTAAAGGAGCATACTGGTTGCTCTTCACTTCTTCAGGATTCCCTCCAACGGTGTGTCTaGAGATCCCCCAGCAAGATC +
Preference number: 4 (lower is better)
Translates to: IFLNLKEHTGCSSLLQDSLQRCV*RSPSKI
Trigger: GATCTTGCTGGGGGATCTGCAGACACACCGTTGGAG...GGAATCCTGAAGAAGTGAAGAGCAACCAGTATGCTCCTTTAAATTTAGGAATAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000041920.5
ENSMUST00000192481.2
ENSMUST00000194208.6
CDS-3UTR CCA 90 bp GTAATATTCCTAAATTTAAAGGAGCATACTGGTTGCTCTTCACTTCTTCAGGATAGACCACGGGCAAACTaGGGCCAGGTGTCATTCAGG +
Preference number: 4 (lower is better)
Translates to: VIFLNLKEHTGCSSLLQDRPRAN*GQVSFR
Trigger: CCTGAATGACACCTGGCCCCAGTTTGCCCGTGGTCT...ATCCTGAAGAAGTGAAGAGCAACCAGTATGCTCCTTTAAATTTAGGAATATTAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041920.5
ENSMUST00000192481.2
ENSMUST00000194208.6
CDS-3UTR TCA 90 bp ATTCCTAAATTTAAAGGAGCATACTGGTTGCTCTTCACTTCTTCAGGATTCCTCGAAGCTGATGATGGCTaGGTCATTACTCCAACGGTG +
Preference number: 4 (lower is better)
Translates to: IPKFKGAYWLLFTSSGFLEADDG*VITPTV
Trigger: CACCGTTGGAGTAATGACTCAGCCATCATCAGCTTC...GAGGAATCCTGAAGAAGTGAAGAGCAACCAGTATGCTCCTTTAAATTTAGGAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041920.5
ENSMUST00000192481.2
ENSMUST00000194208.6
CDS-3UTR TCA 90 bp AATATTCCTAAATTTAAAGGAGCATACTGGTTGCTCTTCACTTCTTCAGGATTCCATCCCAGTAGAGGATaGTATCCTGTCCTCCTAGGC +
Preference number: 4 (lower is better)
Translates to: NIPKFKGAYWLLFTSSGFHPSRG*YPVLLG
Trigger: GCCTAGGAGGACAGGATATCATCCTCTACTGGGATG...GAATCCTGAAGAAGTGAAGAGCAACCAGTATGCTCCTTTAAATTTAGGAATATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041920.5
ENSMUST00000192481.2
ENSMUST00000194208.6
CDS-3UTR CCA 90 bp ATATTCCTAAATTTAAAGGAGCATACTGGTTGCTCTTCACTTCTTCAGGATTCCTTACTCAACTTGCCCTaGGACCATGGCTTCGTGAAG +
Preference number: 4 (lower is better)
Translates to: IFLNLKEHTGCSSLLQDSLLNLP*DHGFVK
Trigger: CTTCACGAAGCCATGGTCCCAGGGCAAGTTGAGTAA...GGAATCCTGAAGAAGTGAAGAGCAACCAGTATGCTCCTTTAAATTTAGGAATAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041920.5
ENSMUST00000194208.6
CDS-3UTR CCA 90 bp AATATTCCTAAATTTAAAGGAGCATACTGGTTGCTCTTCACTTCTTCAGGATTCAACTTCTCCCACTGCTaGTTACTCAACTTGCCCTGG +
Preference number: 4 (lower is better)
Translates to: NIPKFKGAYWLLFTSSGFNFSHC*LLNLPW
Trigger: CCAGGGCAAGTTGAGTAACCAGCAGTGGGAGAAGTT...GAATCCTGAAGAAGTGAAGAGCAACCAGTATGCTCCTTTAAATTTAGGAATATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041920.5
ENSMUST00000194208.6
CDS-3UTR CCA 90 bp AAATTTAAAGGAGCATACTGGTTGCTCTTCACTTCTTCAGGATTCCTCTCTTTCTGTCTCATCAGCATTTaGCAGGAAATCACCTCTGTG +
Preference number: 4 (lower is better)
Translates to: KFKGAYWLLFTSSGFLSFCLISI*QEITSV
Trigger: CACAGAGGTGATTTCCTGCCAAATGCTGATGAGACA...GAAAGAGAGGAATCCTGAAGAAGTGAAGAGCAACCAGTATGCTCCTTTAAATTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041920.5
ENSMUST00000192481.2
ENSMUST00000194208.6
CDS-3UTR CCA 90 bp AATATTCCTAAATTTAAAGGAGCATACTGGTTGCTCTTCACTTCTTCAGGATTCATCTCAATGGGATCCTaGGACCATGGCTTCGTGAAG +
Preference number: 4 (lower is better)
Translates to: NIPKFKGAYWLLFTSSGFISMGS*DHGFVK
Trigger: CTTCACGAAGCCATGGTCCCAGGATCCCATTGAGAT...GAATCCTGAAGAAGTGAAGAGCAACCAGTATGCTCCTTTAAATTTAGGAATATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192481.2
CDS-3UTR CCA 90 bp AATATTCCTAAATTTAAAGGAGCATACTGGTTGCTCTTCACTTCTTCAGGATTCTGTCTCATCAGCATTTaGCAGGAAATCACCTCTGTG +
Preference number: 4 (lower is better)
Translates to: NIPKFKGAYWLLFTSSGFCLISI*QEITSV
Trigger: CACAGAGGTGATTTCCTGCCAAATGCTGATGAGACA...GAATCCTGAAGAAGTGAAGAGCAACCAGTATGCTCCTTTAAATTTAGGAATATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041920.5
ENSMUST00000192481.2
ENSMUST00000194208.6
CDS GCA 90 bp TGTGCAGAGCTGGGGACACTGGACAACCAGGCCACTGGCTTCTCTTaGTTCTCTAGGTCTGACTTCCCTGCCTCTAGGAGACCACGGGCA +
Preference number: 5 (lower is better)
Translates to: CAELGTLDNQATGFS*FSRSDFPASRRPRA
Trigger: TGCCCGTGGTCTCCTAGAGGCAGGGAAGTCAGACCTAGAGAAGCAAGAGAAGCCAGTGGCCTGGTTGTCCAGTGTCCCCAGCTCTGCACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041920.5
ENSMUST00000192481.2
ENSMUST00000194208.6
CDS CCA 90 bp TTCTCTAGGTCTGACTTCCCTGCCTCTAGGAGACCACGGGCAAACTaGGGCCAGGTGTCATTCAGGAGCGTCTGCACGGTTGCACTTGTC +
Preference number: 5 (lower is better)
Translates to: FSRSDFPASRRPRAN*GQVSFRSVCTVALV
Trigger: GACAAGTGCAACCGTGCAGACGCTCCTGAATGACACCTGGCCCCAGTTTGCCCGTGGTCTCCTAGAGGCAGGGAAGTCAGACCTAGAGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041920.5
ENSMUST00000192481.2
ENSMUST00000194208.6
CDS TCA 90 bp GGCCAGGTGTCATTCAGGAGCGTCTGCACGGTTGCACTTGTCCCTTaGTCAGCGTTGAGCACTTTGATGGGCAAGTCTAACCAAGATGGG +
Preference number: 5 (lower is better)
Translates to: GQVSFRSVCTVALVP*SALSTLMGKSNQDG
Trigger: CCCATCTTGGTTAGACTTGCCCATCAAAGTGCTCAACGCTGATCAAGGGACAAGTGCAACCGTGCAGACGCTCCTGAATGACACCTGGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041920.5
ENSMUST00000192481.2
ENSMUST00000194208.6
CDS GCA 90 bp TTCGTGAAGCTGATGATGGCTGAGTCATTACTCCAACGGTGTGTCTaGAGATCCCCCAGCAAGATCAGGCTGTCTGTGCGGGACCAGCTT +
Preference number: 5 (lower is better)
Translates to: FVKLMMAESLLQRCV*RSPSKIRLSVRDQL
Trigger: AAGCTGGTCCCGCACAGACAGCCTGATCTTGCTGGGGGATCTGCAGACACACCGTTGGAGTAATGACTCAGCCATCATCAGCTTCACGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000041920.5
ENSMUST00000192481.2
ENSMUST00000194208.6
CDS TCA 90 bp ACTCAACTTGCCCTGGGACCATGGCTTCGTGAAGCTGATGATGGCTaGGTCATTACTCCAACGGTGTGTCTGCAGATCCCCCAGCAAGAT +
Preference number: 5 (lower is better)
Translates to: TQLALGPWLREADDG*VITPTVCLQIPQQD
Trigger: ATCTTGCTGGGGGATCTGCAGACACACCGTTGGAGTAATGACTCAGCCATCATCAGCTTCACGAAGCCATGGTCCCAGGGCAAGTTGAGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041920.5
ENSMUST00000194208.6
CDS-3UTR CAA 90 bp ACTTTTAAGATCACTAGTATTCAAGAGCACAGACACCACCCCCACCTCACTCCGTGCTGGTTACTCAACTaGCCCTGGGACCATGGCTTC +
Preference number: 5 (lower is better)
Translates to: TFKITSIQEHRHHPHLTPCWLLN*PWDHGF
Trigger: GAAGCCATGGTCCCAGGGCAAGTTGAGTAACCAGCA...CGGAGTGAGGTGGGGGTGGTGTCTGTGCTCTTGAATACTAGTGATCTTAAAAGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000194208.6
CDS-3UTR CAA 90 bp CATACTGGTTGCTCTTCACTTCTTCAGGATTCCTCTCTTTCATCCCCAGATCCTTGCTGGTTACTCAACTaGCCCTGGGACCATGGCTTC +
Preference number: 5 (lower is better)
Translates to: HTGCSSLLQDSSLSSPDPCWLLN*PWDHGF
Trigger: GAAGCCATGGTCCCAGGGCAAGTTGAGTAACCAGCA...AGGATCTGGGGATGAAAGAGAGGAATCCTGAAGAAGTGAAGAGCAACCAGTATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041920.5
ENSMUST00000194208.6
CDS-3UTR CAA 90 bp GGTTGCTCTTCACTTCTTCAGGATTCCTCTCTTTCATCCCCAGATCCTGAGCAGGAAGGTGTAATTCTTTaGCTGGACTTCAGATTGTCC +
Preference number: 5 (lower is better)
Translates to: GCSSLLQDSSLSSPDPEQEGVIL*LDFRLS
Trigger: GGACAATCTGAAGTCCAGCAAAAGAATTACACCTTC...CTGCTCAGGATCTGGGGATGAAAGAGAGGAATCCTGAAGAAGTGAAGAGCAACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041920.5
ENSMUST00000192481.2
ENSMUST00000194208.6
CDS-3UTR CAA 90 bp CTACTTTTAAGATCACTAGTATTCAAGAGCACAGACACCACCCCCACCTCACTCTTAGGTGACATCATTTaGACTAATTCCTGTATGTCC +
Preference number: 5 (lower is better)
Translates to: LLLRSLVFKSTDTTPTSLLGDII*TNSCMS
Trigger: GGACATACAGGAATTAGTCAAAATGATGTCACCTAA...GAGTGAGGTGGGGGTGGTGTCTGTGCTCTTGAATACTAGTGATCTTAAAAGTAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000194208.6
CDS-3UTR CAA 90 bp ATTCCTAAATTTAAAGGAGCATACTGGTTGCTCTTCACTTCTTCAGGATTCCTCGAAGGTGTAATTCTTTaGCTGGACTTCAGATTGTCC +
Preference number: 5 (lower is better)
Translates to: IPKFKGAYWLLFTSSGFLEGVIL*LDFRLS
Trigger: GGACAATCTGAAGTCCAGCAAAAGAATTACACCTTC...GAGGAATCCTGAAGAAGTGAAGAGCAACCAGTATGCTCCTTTAAATTTAGGAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041920.5
ENSMUST00000192481.2
ENSMUST00000194208.6
CDS-3UTR CAA 90 bp AAATTTAAAGGAGCATACTGGTTGCTCTTCACTTCTTCAGGATTCCTCTCTTTCGAAGGTGTAATTCTTTaGCTGGACTTCAGATTGTCC +
Preference number: 5 (lower is better)
Translates to: KFKGAYWLLFTSSGFLSFEGVIL*LDFRLS
Trigger: GGACAATCTGAAGTCCAGCAAAAGAATTACACCTTC...GAAAGAGAGGAATCCTGAAGAAGTGAAGAGCAACCAGTATGCTCCTTTAAATTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041920.5
ENSMUST00000192481.2
ENSMUST00000194208.6
CDS-3UTR CAA 90 bp AAATTTAAAGGAGCATACTGGTTGCTCTTCACTTCTTCAGGATTCCTCTCTTTCTTAGGTGACATCATTTaGACTAATTCCTGTATGTCC +
Preference number: 5 (lower is better)
Translates to: KFKGAYWLLFTSSGFLSFLGDII*TNSCMS
Trigger: GGACATACAGGAATTAGTCAAAATGATGTCACCTAA...GAAAGAGAGGAATCCTGAAGAAGTGAAGAGCAACCAGTATGCTCCTTTAAATTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041920.5
ENSMUST00000194208.6
CDS CCA 72 bp TCTGACTTCCCTGCCTCTAGGAGACCACGGGCAAACTaGGGCCAGGTGTCATTCAGGAGCGTCTGCACGGTT +
Preference number: 6 (lower is better)
Translates to: SDFPASRRPRAN*GQVSFRSVCTV
Trigger: AACCGTGCAGACGCTCCTGAATGACACCTGGCCCCAGTTTGCCCGTGGTCTCCTAGAGGCAGGGAAGTCAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041920.5
ENSMUST00000192481.2
ENSMUST00000194208.6
CDS TCA 72 bp GCCCTGGGACCATGGCTTCGTGAAGCTGATGATGGCTaGGTCATTACTCCAACGGTGTGTCTGCAGATCCCC +
Preference number: 6 (lower is better)
Translates to: ALGPWLREADDG*VITPTVCLQIP
Trigger: GGGGATCTGCAGACACACCGTTGGAGTAATGACTCAGCCATCATCAGCTTCACGAAGCCATGGTCCCAGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041920.5
ENSMUST00000194208.6
CDS GCA 72 bp CTGATGATGGCTGAGTCATTACTCCAACGGTGTGTCTaGAGATCCCCCAGCAAGATCAGGCTGTCTGTGCGG +
Preference number: 6 (lower is better)
Translates to: LMMAESLLQRCV*RSPSKIRLSVR
Trigger: CCGCACAGACAGCCTGATCTTGCTGGGGGATCTGCAGACACACCGTTGGAGTAATGACTCAGCCATCATCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000041920.5
ENSMUST00000192481.2
ENSMUST00000194208.6
CDS GCA 72 bp CTGGGGCCAGGTGTCATTCAGGAGCGTCTGCACGGTTaGACTTGTCCCTTGATCAGCGTTGAGCACTTTGAT +
Preference number: 6 (lower is better)
Translates to: LGPGVIQERLHG*TCPLISVEHFD
Trigger: ATCAAAGTGCTCAACGCTGATCAAGGGACAAGTGCAACCGTGCAGACGCTCCTGAATGACACCTGGCCCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041920.5
ENSMUST00000192481.2
ENSMUST00000194208.6
CDS TCA 72 bp ATCCTGGGACCATGGCTTCGTGAAGCTGATGATGGCTaGGTCATTACTCCAACGGTGTGTCTGCAGATCCCC +
Preference number: 6 (lower is better)
Translates to: ILGPWLREADDG*VITPTVCLQIP
Trigger: GGGGATCTGCAGACACACCGTTGGAGTAATGACTCAGCCATCATCAGCTTCACGAAGCCATGGTCCCAGGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192481.2
CDS CCA 72 bp GCATTCCCAGGGTACATTTCACAGCCGGTAGACAACTaGATCTCAATGGGATCCTGGGACCATGGCTTCGTG +
Preference number: 6 (lower is better)
Translates to: AFPGYISQPVDN*ISMGSWDHGFV
Trigger: CACGAAGCCATGGTCCCAGGATCCCATTGAGATCCAGTTGTCTACCGGCTGTGAAATGTACCCTGGGAATGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192481.2
CDS TCA 72 bp TCATTCAGGAGCGTCTGCACGGTTGCACTTGTCCCTTaGTCAGCGTTGAGCACTTTGATGGGCAAGTCTAAC +
Preference number: 6 (lower is better)
Translates to: SFRSVCTVALVP*SALSTLMGKSN
Trigger: GTTAGACTTGCCCATCAAAGTGCTCAACGCTGATCAAGGGACAAGTGCAACCGTGCAGACGCTCCTGAATGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041920.5
ENSMUST00000192481.2
ENSMUST00000194208.6