Pregenerated sensors for CD1D1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028076Ensembl transcript IDs: ENSMUST00000029717.4, ENSMUST00000063869.11
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | ACCTCAGAGCGTCTGTTTGGGCAGGAAGTATGCTTTCTAGTTCAGTaGAAATCCCATAAAACACTGCCAACAGCTTGTTTCTGGCAGGTA | + |
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Preference number: 1 (lower is better) Translates to: TSERLFGQEVCFLVQ*KSHKTLPTACFWQV Trigger: TACCTGCCAGAAACAAGCTGTTGGCAGTGTTTTATGGGATTTGCACTGAACTAGAAAGCATACTTCCTGCCCAAACAGACGCTCTGAGGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029717.4 ENSMUST00000063869.11 |
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| 3UTR GCA 90 bp | TACACTTGCCAACTAACCTCAGAGCGTCTGTTTGGGCAGGAAGTATaGTTTCTAGTTCAGTGCAAATCCCATAAAACACTGCCAACAGCT | + |
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Preference number: 1 (lower is better) Translates to: YTCQLTSERLFGQEV*FLVQCKSHKTLPTA Trigger: AGCTGTTGGCAGTGTTTTATGGGATTTGCACTGAACTAGAAAGCATACTTCCTGCCCAAACAGACGCTCTGAGGTTAGTTGGCAAGTGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029717.4 ENSMUST00000063869.11 |
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| 3UTR GCA 90 bp | TTGAAAAATACAGAGTACAGCCAGGTTGGTGTTGGACTTTACACTTaGCAACTAACCTCAGAGCGTCTGTTTGGGCAGGAAGTATGCTTT | + |
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Preference number: 1 (lower is better) Translates to: LKNTEYSQVGVGLYT*QLTSERLFGQEVCF Trigger: AAAGCATACTTCCTGCCCAAACAGACGCTCTGAGGTTAGTTGGCAAGTGTAAAGTCCAACACCAACCTGGCTGTACTCTGTATTTTTCAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029717.4 ENSMUST00000063869.11 |
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| 3UTR-3UTR GCA 90 bp | TACAGAGTACAGCCAGGTTGGTGTTGGACTTTACACTTGCCAACTAACCTCAGAGCAGGTACGCACATTTaGAGTTGTGTTTGTTCTAAA | + |
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Preference number: 2 (lower is better) Translates to: YRVQPGWCWTLHLPTNLRAGTHI*SCVCSK Trigger: TTTAGAACAAACACAACTGCAAATGTGCGTACCTGC...TCTGAGGTTAGTTGGCAAGTGTAAAGTCCAACACCAACCTGGCTGTACTCTGTA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029717.4 ENSMUST00000063869.11 |
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| 3UTR-3UTR GCA 90 bp | GAGCGTCTGTTTGGGCAGGAAGTATGCTTTCTAGTTCAGTGCAAATCCCATAAAGCAGGTACGCACATTTaGAGTTGTGTTTGTTCTAAA | + |
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Preference number: 2 (lower is better) Translates to: ERLFGQEVCFLVQCKSHKAGTHI*SCVCSK Trigger: TTTAGAACAAACACAACTGCAAATGTGCGTACCTGC...TTTATGGGATTTGCACTGAACTAGAAAGCATACTTCCTGCCCAAACAGACGCTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029717.4 ENSMUST00000063869.11 |
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| 3UTR-3UTR GCA 90 bp | TTTCTAGTCACCTTGAAAAATACAGAGTACAGCCAGGTTGGTGTTGGACTTTACAATCCCATAAAACACTaGCAACAGCTTGTTTCTGGC | + |
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Preference number: 2 (lower is better) Translates to: FLVTLKNTEYSQVGVGLYNPIKH*QQLVSG Trigger: GCCAGAAACAAGCTGTTGGCAGTGTTTTATGGGATT...GTAAAGTCCAACACCAACCTGGCTGTACTCTGTATTTTTCAAGGTGACTAGAAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029717.4 ENSMUST00000063869.11 |
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| 3UTR-3UTR GCA 90 bp | ACACACAAATCCATTTTTCTAGTCACCTTGAAAAATACAGAGTACAGCCAGGTTAAAGAGCGTACTGGCTaGTCTTCACTTCTTCAGGAT | + |
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Preference number: 2 (lower is better) Translates to: THKSIFLVTLKNTEYSQVKERTG*SSLLQD Trigger: ATCCTGAAGAAGTGAAGAGCAGCCAGTACGCTCTTT...AACCTGGCTGTACTCTGTATTTTTCAAGGTGACTAGAAAAATGGATTTGTGTGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000029717.4 ENSMUST00000063869.11 |
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| 3UTR-3UTR GCA 90 bp | GTCACACACACACAAATCCATTTTTCTAGTCACCTTGAAAAATACAGAGTACAGAAAGAGCGTACTGGCTaGTCTTCACTTCTTCAGGAT | + |
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Preference number: 2 (lower is better) Translates to: VTHTQIHFSSHLEKYRVQKERTG*SSLLQD Trigger: ATCCTGAAGAAGTGAAGAGCAGCCAGTACGCTCTTT...CTGTACTCTGTATTTTTCAAGGTGACTAGAAAAATGGATTTGTGTGTGTGTGAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000029717.4 ENSMUST00000063869.11 |
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| 3UTR-3UTR GCA 90 bp | GTCACACACACACAAATCCATTTTTCTAGTCACCTTGAAAAATACAGAGTACAGGTTGGACTTTACACTTaGCAACTAACCTCAGAGCGT | + |
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Preference number: 2 (lower is better) Translates to: VTHTQIHFSSHLEKYRVQVGLYT*QLTSER Trigger: ACGCTCTGAGGTTAGTTGGCAAGTGTAAAGTCCAAC...CTGTACTCTGTATTTTTCAAGGTGACTAGAAAAATGGATTTGTGTGTGTGTGAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000029717.4 ENSMUST00000063869.11 |
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| 3UTR-3UTR GCA 90 bp | TTATGGCATTTAGAACAAACATTATTAAAAGAGCCACAAATTGGAGGCCCTTGGGTTGGACTTTACACTTaGCAACTAACCTCAGAGCGT | + |
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Preference number: 2 (lower is better) Translates to: LWHLEQTLLKEPQIGGPWVGLYT*QLTSER Trigger: ACGCTCTGAGGTTAGTTGGCAAGTGTAAAGTCCAAC...CCAAGGGCCTCCAATTTGTGGCTCTTTTAATAATGTTTGTTCTAAATGCCATAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029717.4 ENSMUST00000063869.11 |
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| 3UTR-3UTR CCA 90 bp | TTTCTAGTCACCTTGAAAAATACAGAGTACAGCCAGGTTGGTGTTGGACTTTACGTTTGTTCTAAACTATaGAAACTGACGAAACAACTC | + |
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Preference number: 2 (lower is better) Translates to: FLVTLKNTEYSQVGVGLYVCSKL*KLTKQL Trigger: GAGTTGTTTCGTCAGTTTCCATAGTTTAGAACAAAC...GTAAAGTCCAACACCAACCTGGCTGTACTCTGTATTTTTCAAGGTGACTAGAAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029717.4 ENSMUST00000063869.11 |
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| 3UTR-3UTR GCA 90 bp | TTATGGCATTTAGAACAAACATTATTAAAAGAGCCACAAATTGGAGGCCCTTGGTGCTTTCTAGTTCAGTaGAAATCCCATAAAACACTG | + |
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Preference number: 2 (lower is better) Translates to: LWHLEQTLLKEPQIGGPWCFLVQ*KSHKTL Trigger: CAGTGTTTTATGGGATTTGCACTGAACTAGAAAGCA...CCAAGGGCCTCCAATTTGTGGCTCTTTTAATAATGTTTGTTCTAAATGCCATAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029717.4 ENSMUST00000063869.11 |
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| 3UTR-3UTR CCA 90 bp | TTATGGCATTTAGAACAAACATTATTAAAAGAGCCACAAATTGGAGGCCCTTGGGTTTGTTCTAAACTATaGAAACTGACGAAACAACTC | + |
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Preference number: 2 (lower is better) Translates to: LWHLEQTLLKEPQIGGPWVCSKL*KLTKQL Trigger: GAGTTGTTTCGTCAGTTTCCATAGTTTAGAACAAAC...CCAAGGGCCTCCAATTTGTGGCTCTTTTAATAATGTTTGTTCTAAATGCCATAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029717.4 ENSMUST00000063869.11 |
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| 3UTR GCA 72 bp | ACAGAGTACAGCCAGGTTGGTGTTGGACTTTACACTTaGCAACTAACCTCAGAGCGTCTGTTTGGGCAGGAA | + |
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Preference number: 3 (lower is better) Translates to: TEYSQVGVGLYT*QLTSERLFGQE Trigger: TTCCTGCCCAAACAGACGCTCTGAGGTTAGTTGGCAAGTGTAAAGTCCAACACCAACCTGGCTGTACTCTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029717.4 ENSMUST00000063869.11 |
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| 3UTR CCA 72 bp | CACCTTGAAAAATACAGAGTACAGCCAGGTTGGTGTTaGACTTTACACTTGCCAACTAACCTCAGAGCGTCT | + |
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Preference number: 3 (lower is better) Translates to: HLEKYRVQPGWC*TLHLPTNLRAS Trigger: AGACGCTCTGAGGTTAGTTGGCAAGTGTAAAGTCCAACACCAACCTGGCTGTACTCTGTATTTTTCAAGGTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029717.4 ENSMUST00000063869.11 |
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| 3UTR GCA 72 bp | ACTGCCAACAGCTTGTTTCTGGCAGGTACGCACATTTaGAGTTGTGTTTGTTCTAAACTATGGAAACTGACG | + |
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Preference number: 3 (lower is better) Translates to: TANSLFLAGTHI*SCVCSKLWKLT Trigger: CGTCAGTTTCCATAGTTTAGAACAAACACAACTGCAAATGTGCGTACCTGCCAGAAACAAGCTGTTGGCAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029717.4 ENSMUST00000063869.11 |
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| 3UTR GCA 72 bp | CGTCTGTTTGGGCAGGAAGTATGCTTTCTAGTTCAGTaGAAATCCCATAAAACACTGCCAACAGCTTGTTTC | + |
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Preference number: 3 (lower is better) Translates to: RLFGQEVCFLVQ*KSHKTLPTACF Trigger: GAAACAAGCTGTTGGCAGTGTTTTATGGGATTTGCACTGAACTAGAAAGCATACTTCCTGCCCAAACAGACG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029717.4 ENSMUST00000063869.11 |
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| 3UTR GCA 72 bp | CAACTAACCTCAGAGCGTCTGTTTGGGCAGGAAGTATaGTTTCTAGTTCAGTGCAAATCCCATAAAACACTG | + |
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Preference number: 3 (lower is better) Translates to: QLTSERLFGQEV*FLVQCKSHKTL Trigger: CAGTGTTTTATGGGATTTGCACTGAACTAGAAAGCATACTTCCTGCCCAAACAGACGCTCTGAGGTTAGTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029717.4 ENSMUST00000063869.11 |
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| 3UTR CCA 72 bp | ACTTTACACTTGCCAACTAACCTCAGAGCGTCTGTTTaGGCAGGAAGTATGCTTTCTAGTTCAGTGCAAATC | + |
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Preference number: 3 (lower is better) Translates to: TLHLPTNLRASV*AGSMLSSSVQI Trigger: GATTTGCACTGAACTAGAAAGCATACTTCCTGCCCAAACAGACGCTCTGAGGTTAGTTGGCAAGTGTAAAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029717.4 ENSMUST00000063869.11 |
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| 3UTR-3UTR CAA 90 bp | TTATGGCATTTAGAACAAACATTATTAAAAGAGCCACAAATTGGAGGCCCTTGGAACACTGCCAACAGCTaGTTTCTGGCAGGTACGCAC | + |
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Preference number: 3 (lower is better) Translates to: LWHLEQTLLKEPQIGGPWNTANS*FLAGTH Trigger: GTGCGTACCTGCCAGAAACAAGCTGTTGGCAGTGTT...CCAAGGGCCTCCAATTTGTGGCTCTTTTAATAATGTTTGTTCTAAATGCCATAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029717.4 ENSMUST00000063869.11 |
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| 3UTR CCA 72 bp | TCTAGTCACCTTGAAAAATACAGAGTACAGCCAGGTTaGTGTTGGACTTTACACTTGCCAACTAACCTCAGA | + |
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Preference number: 3 (lower is better) Translates to: SSHLEKYRVQPG*CWTLHLPTNLR Trigger: TCTGAGGTTAGTTGGCAAGTGTAAAGTCCAACACCAACCTGGCTGTACTCTGTATTTTTCAAGGTGACTAGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029717.4 ENSMUST00000063869.11 |
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| 3UTR-3UTR CAA 90 bp | TTATGGCATTTAGAACAAACATTATTAAAAGAGCCACAAATTGGAGGCCCTTGGAAAATACTGTTGGTGTaGGATTTTACACTTGCCAAC | + |
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Preference number: 3 (lower is better) Translates to: LWHLEQTLLKEPQIGGPWKILLV*DFTLAN Trigger: GTTGGCAAGTGTAAAATCCAACACCAACAGTATTTT...CCAAGGGCCTCCAATTTGTGGCTCTTTTAATAATGTTTGTTCTAAATGCCATAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000029717.4 ENSMUST00000063869.11 |
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| 3UTR CCA 72 bp | GCATTTAGAACAAACATTATTAAAAGAGCCACAAATTaGAGGCCCTTGGAGTTATCATTAATTGGCAGGTTT | + |
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Preference number: 3 (lower is better) Translates to: AFRTNIIKRATN*RPLELSLIGRF Trigger: AAACCTGCCAATTAATGATAACTCCAAGGGCCTCCAATTTGTGGCTCTTTTAATAATGTTTGTTCTAAATGC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029717.4 ENSMUST00000063869.11 |
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| CDS-3UTR GCA 90 bp | CAGACCAGGACTGAAGTCCTAGAGCCTGGAAAGTCTGAATTTCAGGAGAGGCAGGCTGGTTACTCAACTTaGCCTGGGACCATGGCTTCG | + |
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Preference number: 4 (lower is better) Translates to: QTRTEVLEPGKSEFQERQAGYST*PGTMAS Trigger: CGAAGCCATGGTCCCAGGGCAAGTTGAGTAACCAGC...CTGCCTCTCCTGAAATTCAGACTTTCCAGGCTCTAGGACTTCAGTCCTGGTCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029717.4 |
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| CDS-3UTR CCA 90 bp | CTAACCTCAGAGCGTCTGTTTGGGCAGGAAGTATGCTTTCTAGTTCAGTGCAAACCAAGATGGGGCCCCTaGGACTGTCTGCCAGGACGT | + |
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Preference number: 4 (lower is better) Translates to: LTSERLFGQEVCFLVQCKPRWGP*DCLPGR Trigger: ACGTCCTGGCAGACAGTCCCAGGGGCCCCATCTTGG...TTTGCACTGAACTAGAAAGCATACTTCCTGCCCAAACAGACGCTCTGAGGTTAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029717.4 |
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| CDS-3UTR CCA 90 bp | CTAACCTCAGAGCGTCTGTTTGGGCAGGAAGTATGCTTTCTAGTTCAGTGCAAAGGACAACCAGGCCACTaGCTTCTCCTGGGACCATGG | + |
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Preference number: 4 (lower is better) Translates to: LTSERLFGQEVCFLVQCKGQPGH*LLLGPW Trigger: CCATGGTCCCAGGAGAAGCCAGTGGCCTGGTTGTCC...TTTGCACTGAACTAGAAAGCATACTTCCTGCCCAAACAGACGCTCTGAGGTTAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063869.11 |
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| CDS-3UTR GCA 90 bp | TTTCTAGTCACCTTGAAAAATACAGAGTACAGCCAGGTTGGTGTTGGACTTTACCCTCCTAGGCTGCTGTaGTTCACCCTGCAGGCCAGG | + |
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Preference number: 4 (lower is better) Translates to: FLVTLKNTEYSQVGVGLYPPRLL*FTLQAR Trigger: CCTGGCCTGCAGGGTGAAGCACAGCAGCCTAGGAGG...GTAAAGTCCAACACCAACCTGGCTGTACTCTGTATTTTTCAAGGTGACTAGAAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029717.4 ENSMUST00000063869.11 |
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| CDS-3UTR GCA 90 bp | TCTAGTCACCTTGAAAAATACAGAGTACAGCCAGGTTGGTGTTGGACTTTACACCCTGTCCTCCTAGGCTaGTGTGCTTCACCCTGCAGG | + |
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Preference number: 4 (lower is better) Translates to: SSHLEKYRVQPGWCWTLHPVLLG*CASPCR Trigger: CCTGCAGGGTGAAGCACAGCAGCCTAGGAGGACAGG...GTGTAAAGTCCAACACCAACCTGGCTGTACTCTGTATTTTTCAAGGTGACTAGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029717.4 ENSMUST00000063869.11 |
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| CDS-3UTR CCA 90 bp | GAGCGTCTGTTTGGGCAGGAAGTATGCTTTCTAGTTCAGTGCAAATCCCATAAAGCCACTGGCTTCTCCTaGGACCATGGCTTCGTGAAG | + |
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Preference number: 4 (lower is better) Translates to: ERLFGQEVCFLVQCKSHKATGFS*DHGFVK Trigger: CTTCACGAAGCCATGGTCCCAGGAGAAGCCAGTGGC...TTTATGGGATTTGCACTGAACTAGAAAGCATACTTCCTGCCCAAACAGACGCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063869.11 |
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| 3UTR CAA 72 bp | TACAGAGTACAGCCAGGTTGGTGTTGGACTTTACACTaGCCAACTAACCTCAGAGCGTCTGTTTGGGCAGGA | + |
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Preference number: 4 (lower is better) Translates to: YRVQPGWCWTLH*PTNLRASVWAG Trigger: TCCTGCCCAAACAGACGCTCTGAGGTTAGTTGGCAAGTGTAAAGTCCAACACCAACCTGGCTGTACTCTGTA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029717.4 ENSMUST00000063869.11 |
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| CDS-3UTR CCA 90 bp | TTTCTAGTCACCTTGAAAAATACAGAGTACAGCCAGGTTGGTGTTGGACTTTACCACACCAGCTGCCTATaGCCATGTGCAGAGCTGGGG | + |
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Preference number: 4 (lower is better) Translates to: FLVTLKNTEYSQVGVGLYHTSCL*PCAELG Trigger: CCCCAGCTCTGCACATGGCCATAGGCAGCTGGTGTG...GTAAAGTCCAACACCAACCTGGCTGTACTCTGTATTTTTCAAGGTGACTAGAAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029717.4 ENSMUST00000063869.11 |
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| CDS-3UTR TCA 90 bp | TCTAGTCACCTTGAAAAATACAGAGTACAGCCAGGTTGGTGTTGGACTTTACACTCATTACTCCAACGGTaGGTCTGCAGATCCCCCAGC | + |
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Preference number: 4 (lower is better) Translates to: SSHLEKYRVQPGWCWTLHSLLQR*VCRSPS Trigger: GCTGGGGGATCTGCAGACTCACCGTTGGAGTAATGA...GTGTAAAGTCCAACACCAACCTGGCTGTACTCTGTATTTTTCAAGGTGACTAGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000029717.4 ENSMUST00000063869.11 |
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| CDS-3UTR GCA 90 bp | ACACACAAATCCATTTTTCTAGTCACCTTGAAAAATACAGAGTACAGCCAGGTTCCTCCTAGGCTGCTGTaGTTCACCCTGCAGGCCAGG | + |
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Preference number: 4 (lower is better) Translates to: THKSIFLVTLKNTEYSQVPPRLL*FTLQAR Trigger: CCTGGCCTGCAGGGTGAAGCACAGCAGCCTAGGAGG...AACCTGGCTGTACTCTGTATTTTTCAAGGTGACTAGAAAAATGGATTTGTGTGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000029717.4 ENSMUST00000063869.11 |
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| CDS-3UTR GCA 90 bp | TCTAGTCACCTTGAAAAATACAGAGTACAGCCAGGTTGGTGTTGGACTTTACACTGCAACTTCTCCCACTaGTGGTTACTCAACTTGCCC | + |
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Preference number: 4 (lower is better) Translates to: SSHLEKYRVQPGWCWTLHCNFSH*WLLNLP Trigger: GGGCAAGTTGAGTAACCAGCAGTGGGAGAAGTTGCA...GTGTAAAGTCCAACACCAACCTGGCTGTACTCTGTATTTTTCAAGGTGACTAGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029717.4 |
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| CDS-3UTR TCA 90 bp | ACACACAAATCCATTTTTCTAGTCACCTTGAAAAATACAGAGTACAGCCAGGTTTCATTACTCCAACGGTaGGTCTGCAGATCCCCCAGC | + |
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Preference number: 4 (lower is better) Translates to: THKSIFLVTLKNTEYSQVSLLQR*VCRSPS Trigger: GCTGGGGGATCTGCAGACTCACCGTTGGAGTAATGA...AACCTGGCTGTACTCTGTATTTTTCAAGGTGACTAGAAAAATGGATTTGTGTGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 2 transcripts: ENSMUST00000029717.4 ENSMUST00000063869.11 |
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| CDS-3UTR GCA 90 bp | GTCACACACACACAAATCCATTTTTCTAGTCACCTTGAAAAATACAGAGTACAGGAGCATCTGCACGGTTaGACTTGTCCCTTGATCAGC | + |
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Preference number: 4 (lower is better) Translates to: VTHTQIHFSSHLEKYRVQEHLHG*TCPLIS Trigger: GCTGATCAAGGGACAAGTGCAACCGTGCAGATGCTC...CTGTACTCTGTATTTTTCAAGGTGACTAGAAAAATGGATTTGTGTGTGTGTGAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000029717.4 |
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| CDS-3UTR GCA 90 bp | GTCACACACACACAAATCCATTTTTCTAGTCACCTTGAAAAATACAGAGTACAGGGACCAGCTTCTGTTTaGAAAGGAAGACATCTGCAG | + |
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Preference number: 4 (lower is better) Translates to: VTHTQIHFSSHLEKYRVQGPASV*KGRHLQ Trigger: CTGCAGATGTCTTCCTTTGCAAACAGAAGCTGGTCC...CTGTACTCTGTATTTTTCAAGGTGACTAGAAAAATGGATTTGTGTGTGTGTGAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000029717.4 ENSMUST00000063869.11 |
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| CDS-3UTR GCA 90 bp | TTATGGCATTTAGAACAAACATTATTAAAAGAGCCACAAATTGGAGGCCCTTGGGGACCAGCTTCTGTTTaGAAAGGAAGACATCTGCAG | + |
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Preference number: 4 (lower is better) Translates to: LWHLEQTLLKEPQIGGPWGPASV*KGRHLQ Trigger: CTGCAGATGTCTTCCTTTGCAAACAGAAGCTGGTCC...CCAAGGGCCTCCAATTTGTGGCTCTTTTAATAATGTTTGTTCTAAATGCCATAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029717.4 ENSMUST00000063869.11 |
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| 3UTR CAA 72 bp | ATGTCACACACACACAAATCCATTTTTCTAGTCACCTaGAAAAATACAGAGTACAGCCAGGTTGGTGTTGGA | + |
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Preference number: 4 (lower is better) Translates to: MSHTHKSIFLVT*KNTEYSQVGVG Trigger: TCCAACACCAACCTGGCTGTACTCTGTATTTTTCAAGGTGACTAGAAAAATGGATTTGTGTGTGTGTGACAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000029717.4 ENSMUST00000063869.11 |
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| CDS TCA 90 bp | CATGGCTTCGTGAAGCTGATGGTGGCTGAGTCATTACTCCAACGGTaGGTCTGCAGATCCCCCAGCCAGACCACGCTGTCTGTGCGGGAC | + |
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Preference number: 5 (lower is better) Translates to: HGFVKLMVAESLLQR*VCRSPSQTTLSVRD Trigger: GTCCCGCACAGACAGCGTGGTCTGGCTGGGGGATCTGCAGACTCACCGTTGGAGTAATGACTCAGCCACCATCAGCTTCACGAAGCCATG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029717.4 ENSMUST00000063869.11 |
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| CDS GCA 90 bp | TGTGCAGAGCTGGGGACACTGGACAACCAGGCCACTGGCTTCTCTTaGTTCTCTAGGTCTGACTTCCCTGCCTCTAGGAGACCACGGACA | + |
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Preference number: 5 (lower is better) Translates to: CAELGTLDNQATGFS*FSRSDFPASRRPRT Trigger: TGTCCGTGGTCTCCTAGAGGCAGGGAAGTCAGACCTAGAGAAGCAAGAGAAGCCAGTGGCCTGGTTGTCCAGTGTCCCCAGCTCTGCACA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029717.4 |
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| CDS GCA 90 bp | TGGGTAGAAGCCAGAGACATGACACACCAGCTGCCTATGGCCATGTaGAGAGCTGGGGACACTGGACAACCAGGCCACTGGCTTCTCTTG | + |
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Preference number: 5 (lower is better) Translates to: WVEARDMTHQLPMAM*RAGDTGQPGHWLLL Trigger: CAAGAGAAGCCAGTGGCCTGGTTGTCCAGTGTCCCCAGCTCTGCACATGGCCATAGGCAGCTGGTGTGTCATGTCTCTGGCTTCTACCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029717.4 |
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| CDS CCA 90 bp | TGTGCAGAGCTGGGGACACTGGACAACCAGGCCACTGGCTTCTCCTaGGACCATGGCTTCGTGAAGCTGATGGTGGCTGAGTCATTACTC | + |
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Preference number: 5 (lower is better) Translates to: CAELGTLDNQATGFS*DHGFVKLMVAESLL Trigger: GAGTAATGACTCAGCCACCATCAGCTTCACGAAGCCATGGTCCCAGGAGAAGCCAGTGGCCTGGTTGTCCAGTGTCCCCAGCTCTGCACA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063869.11 |
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| CDS CCA 90 bp | AGCCAGAGACATGACACACCAGCTGCCTATGGCCATGTGCAGAGCTaGGGACACTGGACAACCAGGCCACTGGCTTCTCTTGCTTCTCTA | + |
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Preference number: 5 (lower is better) Translates to: SQRHDTPAAYGHVQS*GHWTTRPLASLASL Trigger: TAGAGAAGCAAGAGAAGCCAGTGGCCTGGTTGTCCAGTGTCCCCAGCTCTGCACATGGCCATAGGCAGCTGGTGTGTCATGTCTCTGGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029717.4 |
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| CDS-3UTR CAA 90 bp | ACACACAAATCCATTTTTCTAGTCACCTTGAAAAATACAGAGTACAGCCAGGTTTCACCCACACAGGTTTaGGGTAGAAGCCAGAGACAT | + |
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Preference number: 5 (lower is better) Translates to: THKSIFLVTLKNTEYSQVSPTQV*GRSQRH Trigger: ATGTCTCTGGCTTCTACCCAAAACCTGTGTGGGTGA...AACCTGGCTGTACTCTGTATTTTTCAAGGTGACTAGAAAAATGGATTTGTGTGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000029717.4 ENSMUST00000063869.11 |
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| CDS GCA 72 bp | GCCAGAGACATGACACACCAGCTGCCTATGGCCATGTaGAGAGCTGGGGACACTGGACAACCAGGCCACTGG | + |
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Preference number: 6 (lower is better) Translates to: ARDMTHQLPMAM*RAGDTGQPGHW Trigger: CCAGTGGCCTGGTTGTCCAGTGTCCCCAGCTCTGCACATGGCCATAGGCAGCTGGTGTGTCATGTCTCTGGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029717.4 ENSMUST00000063869.11 |
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| CDS CCA 72 bp | CTGGGGACACTGGACAACCAGGCCACTGGCTTCTCCTaGGACCATGGCTTCGTGAAGCTGATGGTGGCTGAG | + |
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Preference number: 6 (lower is better) Translates to: LGTLDNQATGFS*DHGFVKLMVAE Trigger: CTCAGCCACCATCAGCTTCACGAAGCCATGGTCCCAGGAGAAGCCAGTGGCCTGGTTGTCCAGTGTCCCCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063869.11 |
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| CDS CCA 72 bp | ATGTGCAGAGCTGGGGACACTGGACAACCAGGCCACTaGCTTCTCCTGGGACCATGGCTTCGTGAAGCTGAT | + |
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Preference number: 6 (lower is better) Translates to: MCRAGDTGQPGH*LLLGPWLREAD Trigger: ATCAGCTTCACGAAGCCATGGTCCCAGGAGAAGCCAGTGGCCTGGTTGTCCAGTGTCCCCAGCTCTGCACAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063869.11 |
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| CDS TCA 72 bp | GTGAAGCTGATGGTGGCTGAGTCATTACTCCAACGGTaGGTCTGCAGATCCCCCAGCCAGACCACGCTGTCT | + |
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Preference number: 6 (lower is better) Translates to: VKLMVAESLLQR*VCRSPSQTTLS Trigger: AGACAGCGTGGTCTGGCTGGGGGATCTGCAGACTCACCGTTGGAGTAATGACTCAGCCACCATCAGCTTCAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029717.4 ENSMUST00000063869.11 |
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| CDS TCA 72 bp | CTCCTGGGACCATGGCTTCGTGAAGCTGATGGTGGCTaGGTCATTACTCCAACGGTGAGTCTGCAGATCCCC | + |
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Preference number: 6 (lower is better) Translates to: LLGPWLREADGG*VITPTVSLQIP Trigger: GGGGATCTGCAGACTCACCGTTGGAGTAATGACTCAGCCACCATCAGCTTCACGAAGCCATGGTCCCAGGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063869.11 |
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| CDS GCA 72 bp | CCAGACCACGCTGTCTGTGCGGGACCAGCTTCTGTTTaGAAAGGAAGACATCTGCAGGCAGCGGAAGGTGTA | + |
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Preference number: 6 (lower is better) Translates to: PDHAVCAGPASV*KGRHLQAAEGV Trigger: TACACCTTCCGCTGCCTGCAGATGTCTTCCTTTGCAAACAGAAGCTGGTCCCGCACAGACAGCGTGGTCTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029717.4 ENSMUST00000063869.11 |
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| CDS CAA 72 bp | GATCAGTACTATGAAGACGATCAGGCCCACGGGTGCTaGCCTGGCATCCCAGTAGAGGATGATATCCTGTCC | + |
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Preference number: 6 (lower is better) Translates to: DQYYEDDQAHGC*PGIPVEDDILS Trigger: GGACAGGATATCATCCTCTACTGGGATGCCAGGCAAGCACCCGTGGGCCTGATCGTCTTCATAGTACTGATC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029717.4 ENSMUST00000063869.11 |
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| CDS CAA 72 bp | TTCCTGTATGTCCCTGGTAAAGCTGACTCGATAGACTaGAAACATATGCTGCAACTTCTCCCACTGCTGGTT | + |
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Preference number: 6 (lower is better) Translates to: FLYVPGKADSID*KHMLQLLPLLV Trigger: AACCAGCAGTGGGAGAAGTTGCAGCATATGTTTCAAGTCTATCGAGTCAGCTTTACCAGGGACATACAGGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029717.4 |
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