RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CD180 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000021624

Ensembl transcript IDs: ENSMUST00000022124.10, ENSMUST00000167144.2, ENSMUST00000170878.2, ENSMUST00000171267.2, ENSMUST00000172138.2

Found 148 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CATTTAGCAGGTCGGCTGTCTTGTCACTGTGTGACAGGGTGGGACTaGAGACTTAGCTCGCGTGAGGATTATTTTAAGAAGGTTCTGAGC +
Preference number: 1 (lower is better)
Translates to: HLAGRLSCHCVTGWD*RLSSREDYFKKVLS
Trigger: GCTCAGAACCTTCTTAAAATAATCCTCACGCGAGCTAAGTCTTCAGTCCCACCCTGTCACACAGTGACAAGACAGCCGACCTGCTAAATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170878.2
ENSMUST00000172138.2
3UTR GCA 90 bp TACCCACAAGTGAGTAGTGATATTGGCGGTAGCATCTCACAATGGTaGTTACAAACAAGAAATATCATCATAGGTGTGTGTGTTCTCCCG +
Preference number: 1 (lower is better)
Translates to: YPQVSSDIGGSISQW*LQTRNIIIGVCVLP
Trigger: CGGGAGAACACACACACCTATGATGATATTTCTTGTTTGTAAGCACCATTGTGAGATGCTACCGCCAATATCACTACTCACTTGTGGGTA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171267.2
3UTR CCA 90 bp TCTCTCTTCTTTCCACATATGCAAGTTGCACACCCTCACTTGCTTTaGATATTTCTGCCCATTTGTTCTGAAACATTGCTTCAGCATTCA +
Preference number: 1 (lower is better)
Translates to: SLFFPHMQVAHPHLL*IFLPICSETLLQHS
Trigger: TGAATGCTGAAGCAATGTTTCAGAACAAATGGGCAGAAATATCCAAAGCAAGTGAGGGTGTGCAACTTGCATATGTGGAAAGAAGAGAGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171267.2
3UTR CCA 90 bp ATCTACCCACAAGTGAGTAGTGATATTGGCGGTAGCATCTCACAATaGTGCTTACAAACAAGAAATATCATCATAGGTGTGTGTGTTCTC +
Preference number: 1 (lower is better)
Translates to: IYPQVSSDIGGSISQ*CLQTRNIIIGVCVL
Trigger: GAGAACACACACACCTATGATGATATTTCTTGTTTGTAAGCACCATTGTGAGATGCTACCGCCAATATCACTACTCACTTGTGGGTAGAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171267.2
3UTR TCA 90 bp CCCTCCTCATGCCACAGCCCTTTAATACAGTTCCTCATGTTGTGGTaGCCCTCCAGCCATAAAATTATTTTGTTTATATTTCATAACTGT +
Preference number: 1 (lower is better)
Translates to: PSSCHSPLIQFLMLW*PSSHKIILFIFHNC
Trigger: ACAGTTATGAAATATAAACAAAATAATTTTATGGCTGGAGGGTCACCACAACATGAGGAACTGTATTAAAGGGCTGTGGCATGAGGAGGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171267.2
3UTR CCA 90 bp TTGCTTCAGCATTCACATAAAACTTTTCAGCTATATTTCACTAGTTaGAATCATGATTCGCCTCTAGAGCAGATAATGGAACTCTTTATC +
Preference number: 1 (lower is better)
Translates to: LLQHSHKTFQLYFTS*NHDSPLEQIMELFI
Trigger: GATAAAGAGTTCCATTATCTGCTCTAGAGGCGAATCATGATTCCAACTAGTGAAATATAGCTGAAAAGTTTTATGTGAATGCTGAAGCAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171267.2
3UTR-3UTR TCA 90 bp AGTTGGCCCCAGCATAGCCAAGTTGGGTGGAGGCTAGGCTGGGGGTGGGAGCCATTCAGAAAAGCTCAGTaGACCCCCAGCCCAGCCCTA +
Preference number: 2 (lower is better)
Translates to: SWPQHSQVGWRLGWGWEPFRKAQ*TPSPAL
Trigger: TAGGGCTGGGCTGGGGGTTCACTGAGCTTTTCTGAA...TGGCTCCCACCCCCAGCCTAGCCTCCACCCAACTTGGCTATGCTGGGGCCAACT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
3UTR-3UTR GCA 90 bp TCTCCACTTAGGAGGAGATCTCTCTTCAAGAAGCTGGCCAAGCAGCCTTCTCCTAGCAGCCTTCTCCTTTaGTCCACACCAGCCGAAGTT +
Preference number: 2 (lower is better)
Translates to: SPLRRRSLFKKLAKQPSPSSLLL*STPAEV
Trigger: AACTTCGGCTGGTGTGGAGCAAAGGAGAAGGCTGCT...AGGAGAAGGCTGCTTGGCCAGCTTCTTGAAGAGAGATCTCCTCCTAAGTGGAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170878.2
ENSMUST00000172138.2
3UTR-3UTR GCA 90 bp GAGGATTATTTTAAGAAGGTTCTGAGCCCTGTGCTTCTCTGTCTCCACTTAGGAAGCAGCCTTCTCCTTTaGTCCACACCAGCCGAAGTT +
Preference number: 2 (lower is better)
Translates to: EDYFKKVLSPVLLCLHLGSSLLL*STPAEV
Trigger: AACTTCGGCTGGTGTGGAGCAAAGGAGAAGGCTGCT...TCCTAAGTGGAGACAGAGAAGCACAGGGCTCAGAACCTTCTTAAAATAATCCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170878.2
ENSMUST00000172138.2
3UTR-3UTR CCA 90 bp AGAGAAAGAGAGCAGTGGGTCAGAGTTGGCCCCAGCATAGCCAAGTTGGGTGGAGACAGTTTCTTCACTTaGGACAATTTTGCTAAACAC +
Preference number: 2 (lower is better)
Translates to: REREQWVRVGPSIAKLGGDSFFT*DNFAKH
Trigger: GTGTTTAGCAAAATTGTCCCAAGTGAAGAAACTGTC...TCCACCCAACTTGGCTATGCTGGGGCCAACTCTGACCCACTGCTCTCTTTCTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
3UTR-3UTR CCA 90 bp CTTAGCTCGCGTGAGGATTATTTTAAGAAGGTTCTGAGCCCTGTGCTTCTCTGTCTCTCTTCAAGAAGCTaGCCAAGCAGCCTTCTCCTT +
Preference number: 2 (lower is better)
Translates to: LSSREDYFKKVLSPVLLCLSSRS*PSSLLL
Trigger: AAGGAGAAGGCTGCTTGGCCAGCTTCTTGAAGAGAG...ACAGAGAAGCACAGGGCTCAGAACCTTCTTAAAATAATCCTCACGCGAGCTAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170878.2
ENSMUST00000172138.2
3UTR CAA 90 bp TGTCTCGGAAGCCTCAGGCTTCTCTCTTCTTTCCACATATGCAAGTaGCACACCCTCACTTGCTTTGGATATTTCTGCCCATTTGTTCTG +
Preference number: 2 (lower is better)
Translates to: CLGSLRLLSSFHICK*HTLTCFGYFCPFVL
Trigger: CAGAACAAATGGGCAGAAATATCCAAAGCAAGTGAGGGTGTGCAACTTGCATATGTGGAAAGAAGAGAGAAGCCTGAGGCTTCCGAGACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171267.2
3UTR-3UTR TCA 90 bp ATCAATTACACACTTGTGCACGTGAACACACACCCCTTTGTTTGCACACATGCGTTCCTCATGTTGTGGTaGCCCTCCAGCCATAAAATT +
Preference number: 2 (lower is better)
Translates to: INYTLVHVNTHPFVCTHAFLMLW*PSSHKI
Trigger: AATTTTATGGCTGGAGGGTCACCACAACATGAGGAA...CGCATGTGTGCAAACAAAGGGGTGTGTGTTCACGTGCACAAGTGTGTAATTGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171267.2
3UTR-3UTR TCA 90 bp ACTATGTGTCAGATGATAGATGGGGAAATGCTTCTTGAACTGGAAAACAGTAAACAAGGTCAGCCTGGCTaGCAGAGTGAATTCCAAGAC +
Preference number: 2 (lower is better)
Translates to: TMCQMIDGEMLLELENSKQGQPG*QSEFQD
Trigger: GTCTTGGAATTCACTCTGTCAGCCAGGCTGACCTTG...TTTACTGTTTTCCAGTTCAAGAAGCATTTCCCCATCTATCATCTGACACATAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171267.2
3UTR-3UTR GCA 90 bp ACTATGTGTCAGATGATAGATGGGGAAATGCTTCTTGAACTGGAAAACAGTAAATTGCACACCCTCACTTaGTTTGGATATTTCTGCCCA +
Preference number: 2 (lower is better)
Translates to: TMCQMIDGEMLLELENSKLHTLT*FGYFCP
Trigger: TGGGCAGAAATATCCAAAGCAAGTGAGGGTGTGCAA...TTTACTGTTTTCCAGTTCAAGAAGCATTTCCCCATCTATCATCTGACACATAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171267.2
3UTR-3UTR CCA 90 bp TCCACATATGCAAGTTGCACACCCTCACTTGCTTTGGATATTTCTGCCCATTTGCTATATTTCACTAGTTaGAATCATGATTCGCCTCTA +
Preference number: 2 (lower is better)
Translates to: STYASCTPSLALDISAHLLYFTS*NHDSPL
Trigger: TAGAGGCGAATCATGATTCCAACTAGTGAAATATAG...CAAATGGGCAGAAATATCCAAAGCAAGTGAGGGTGTGCAACTTGCATATGTGGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171267.2
3UTR-3UTR CAA 90 bp TGCTTAAACCGGTCCCTGTCATCTGGAGAGAGCCTCCCGGGTTCCCCAACTCACTCCCCAACTCACAGCTaGTCCCCGAGGTCTCCAACA +
Preference number: 3 (lower is better)
Translates to: CLNRSLSSGESLPGSPTHSPTHS*SPRSPT
Trigger: TGTTGGAGACCTCGGGGACAAGCTGTGAGTTGGGGA...GTGAGTTGGGGAACCCGGGAGGCTCTCTCCAGATGACAGGGACCGGTTTAAGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000170878.2
ENSMUST00000172138.2
3UTR CCA 72 bp CAGAAGTATAAGAGAAAGAGAGCAGTGGGTCAGAGTTaGCCCCAGCATAGCCAAGTTGGGTGGAGGCTAGGC +
Preference number: 3 (lower is better)
Translates to: QKYKRKRAVGQS*PQHSQVGWRLG
Trigger: GCCTAGCCTCCACCCAACTTGGCTATGCTGGGGCCAACTCTGACCCACTGCTCTCTTTCTCTTATACTTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
3UTR-3UTR CAA 90 bp AAGGTTCTGAGCCCTGTGCTTCTCTGTCTCCACTTAGGAGGAGATCTCTCTTCATCCCCAACTCACAGCTaGTCCCCGAGGTCTCCAACA +
Preference number: 3 (lower is better)
Translates to: KVLSPVLLCLHLGGDLSSSPTHS*SPRSPT
Trigger: TGTTGGAGACCTCGGGGACAAGCTGTGAGTTGGGGA...TGAAGAGAGATCTCCTCCTAAGTGGAGACAGAGAAGCACAGGGCTCAGAACCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000170878.2
ENSMUST00000172138.2
3UTR CCA 72 bp ACTGGAGGGACTGCCTCTGTGTCTCACAGCCATGTCTaGTCCTCCAACCACAGTACCATGGAAGACTCATAT +
Preference number: 3 (lower is better)
Translates to: TGGTASVSHSHV*SSNHSTMEDSY
Trigger: ATATGAGTCTTCCATGGTACTGTGGTTGGAGGACCAGACATGGCTGTGAGACACAGAGGCAGTCCCTCCAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
3UTR TCA 72 bp GGTCGGCTGTCTTGTCACTGTGTGACAGGGTGGGACTaGAGACTTAGCTCGCGTGAGGATTATTTTAAGAAG +
Preference number: 3 (lower is better)
Translates to: GRLSCHCVTGWD*RLSSREDYFKK
Trigger: CTTCTTAAAATAATCCTCACGCGAGCTAAGTCTTCAGTCCCACCCTGTCACACAGTGACAAGACAGCCGACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170878.2
ENSMUST00000172138.2
3UTR GCA 72 bp CTAAGCCATGAGAACGTTGTCAGCACAGAAGTGGCATaGTACCATTTAGCAGGTCGGCTGTCTTGTCACTGT +
Preference number: 3 (lower is better)
Translates to: LSHENVVSTEVA*YHLAGRLSCHC
Trigger: ACAGTGACAAGACAGCCGACCTGCTAAATGGTAGCATGCCACTTCTGTGCTGACAACGTTCTCATGGCTTAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170878.2
3UTR CCA 72 bp ACCCCCAGCCCAGCCCTAGGAACTAATAGAAAAGTCTaGTCACTCAAGGATGACAGTTTCTTCACTTGGGAC +
Preference number: 3 (lower is better)
Translates to: TPSPALGTNRKV*SLKDDSFFTWD
Trigger: GTCCCAAGTGAAGAAACTGTCATCCTTGAGTGACCAGACTTTTCTATTAGTTCCTAGGGCTGGGCTGGGGGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
3UTR-3UTR CAA 90 bp GGGACTGCCTCTGTGTCTCACAGCCATGTCTGGTCCTCCAACCACAGTACCATGTCACTTGGGACAATTTaGCTAAACACATTTATCTGC +
Preference number: 3 (lower is better)
Translates to: GTASVSHSHVWSSNHSTMSLGTI*LNTFIC
Trigger: GCAGATAAATGTGTTTAGCAAAATTGTCCCAAGTGA...CATGGTACTGTGGTTGGAGGACCAGACATGGCTGTGAGACACAGAGGCAGTCCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
3UTR TCA 72 bp GACATTCTTCATGTGTACTATCAGCCTCCTAAGCCATaGGAACGTTGTCAGCACAGAAGTGGCATGCTACCA +
Preference number: 3 (lower is better)
Translates to: DILHVYYQPPKP*ERCQHRSGMLP
Trigger: TGGTAGCATGCCACTTCTGTGCTGACAACGTTCTCATGGCTTAGGAGGCTGATAGTACACATGAAGAATGTC
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170878.2
3UTR GCA 72 bp CTCGGAAGCCTCAGGCTTCTCTCTTCTTTCCACATATaGAAGTTGCACACCCTCACTTGCTTTGGATATTTC +
Preference number: 3 (lower is better)
Translates to: LGSLRLLSSFHI*KLHTLTCFGYF
Trigger: GAAATATCCAAAGCAAGTGAGGGTGTGCAACTTGCATATGTGGAAAGAAGAGAGAAGCCTGAGGCTTCCGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171267.2
3UTR-3UTR CAA 90 bp CTCAGGCTTCTCTCTTCTTTCCACATATGCAAGTTGCACACCCTCACTTGCTTTTCTCTTAAAATACCATaGCTCAGTGACAGCCAACTC +
Preference number: 3 (lower is better)
Translates to: LRLLSSFHICKLHTLTCFSLKIP*LSDSQL
Trigger: GAGTTGGCTGTCACTGAGCAATGGTATTTTAAGAGA...AAAGCAAGTGAGGGTGTGCAACTTGCATATGTGGAAAGAAGAGAGAAGCCTGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171267.2
3UTR CCA 72 bp CTCACAGCCATGTCTGGTCCTCCAACCACAGTACCATaGAAGACTCATATGAGTAAGACATATGTTCAGAAA +
Preference number: 3 (lower is better)
Translates to: LTAMSGPPTTVP*KTHMSKTYVQK
Trigger: TTTCTGAACATATGTCTTACTCATATGAGTCTTCCATGGTACTGTGGTTGGAGGACCAGACATGGCTGTGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
3UTR GCA 72 bp TGCAAGTTGCACACCCTCACTTGCTTTGGATATTTCTaGCCATTTGTTCTGAAACATTGCTTCAGCATTCAC +
Preference number: 3 (lower is better)
Translates to: CKLHTLTCFGYF*PFVLKHCFSIH
Trigger: GTGAATGCTGAAGCAATGTTTCAGAACAAATGGGCAGAAATATCCAAAGCAAGTGAGGGTGTGCAACTTGCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171267.2
3UTR CCA 72 bp CAGGACCTAGCACATGCTAAGCATACATTCTACCAATaGGCTATAGTCTTGCTCTTTTCTCATCAGGTATAT +
Preference number: 3 (lower is better)
Translates to: QDLAHAKHTFYQ*AIVLLFSHQVY
Trigger: ATATACCTGATGAGAAAAGAGCAAGACTATAGCCCATTGGTAGAATGTATGCTTAGCATGTGCTAGGTCCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171267.2
3UTR GCA 72 bp GTGAGTAGTGATATTGGCGGTAGCATCTCACAATGGTaGTTACAAACAAGAAATATCATCATAGGTGTGTGT +
Preference number: 3 (lower is better)
Translates to: VSSDIGGSISQW*LQTRNIIIGVC
Trigger: ACACACACCTATGATGATATTTCTTGTTTGTAAGCACCATTGTGAGATGCTACCGCCAATATCACTACTCAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171267.2
3UTR TCA 72 bp TGCCACAGCCCTTTAATACAGTTCCTCATGTTGTGGTaGCCCTCCAGCCATAAAATTATTTTGTTTATATTT +
Preference number: 3 (lower is better)
Translates to: CHSPLIQFLMLW*PSSHKIILFIF
Trigger: AAATATAAACAAAATAATTTTATGGCTGGAGGGTCACCACAACATGAGGAACTGTATTAAAGGGCTGTGGCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171267.2
3UTR GCA 72 bp ACTAGAGAGATCTATGAATTTCTCTTAAAATACCATTaGTCAGTGACAGCCAACTCTATTAACAGGCAGTGT +
Preference number: 3 (lower is better)
Translates to: TREIYEFLLKYH*SVTANSINRQC
Trigger: ACACTGCCTGTTAATAGAGTTGGCTGTCACTGAGCAATGGTATTTTAAGAGAAATTCATAGATCTCTCTAGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171267.2
3UTR CCA 72 bp CATTCACATAAAACTTTTCAGCTATATTTCACTAGTTaGAATCATGATTCGCCTCTAGAGCAGATAATGGAA +
Preference number: 3 (lower is better)
Translates to: HSHKTFQLYFTS*NHDSPLEQIME
Trigger: TTCCATTATCTGCTCTAGAGGCGAATCATGATTCCAACTAGTGAAATATAGCTGAAAAGTTTTATGTGAATG
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171267.2
CDS-3UTR CCA 90 bp AGTTGGCCCCAGCATAGCCAAGTTGGGTGGAGGCTAGGCTGGGGGTGGGAGCCAAGGCGTGCTGGTCAATaGAGGAGAGATCACAAAAGG +
Preference number: 4 (lower is better)
Translates to: SWPQHSQVGWRLGWGWEPRRAGQ*RRDHKR
Trigger: CCTTTTGTGATCTCTCCTCCATTGACCAGCACGCCT...TGGCTCCCACCCCCAGCCTAGCCTCCACCCAACTTGGCTATGCTGGGGCCAACT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
CDS-3UTR CCA 90 bp GGTCAGAGTTGGCCCCAGCATAGCCAAGTTGGGTGGAGGCTAGGCTGGGGGTGGGTTTCAATGTCATCATaGCTGAGGTCAAGTTCGCGG +
Preference number: 4 (lower is better)
Translates to: GQSWPQHSQVGWRLGWGWVSMSS*LRSSSR
Trigger: CCGCGAACTTGACCTCAGCCATGATGACATTGAAAC...CCACCCCCAGCCTAGCCTCCACCCAACTTGGCTATGCTGGGGCCAACTCTGACC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
3UTR CAA 72 bp TCTGGAGAGAGCCTCCCGGGTTCCCCAACTCACAGCTaGTCCCCGAGGTCTCCAACACCCAGTTATCGTTCT +
Preference number: 4 (lower is better)
Translates to: SGESLPGSPTHS*SPRSPTPSYRS
Trigger: AGAACGATAACTGGGTGTTGGAGACCTCGGGGACAAGCTGTGAGTTGGGGAACCCGGGAGGCTCTCTCCAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000172138.2
CDS-3UTR TCA 90 bp GGGACTGCCTCTGTGTCTCACAGCCATGTCTGGTCCTCCAACCACAGTACCATGACTTTGGAAGACAGCTaGGTCGAAAGCCCCCAGCTC +
Preference number: 4 (lower is better)
Translates to: GTASVSHSHVWSSNHSTMTLEDS*VESPQL
Trigger: GAGCTGGGGGCTTTCGACTCAGCTGTCTTCCAAAGT...CATGGTACTGTGGTTGGAGGACCAGACATGGCTGTGAGACACAGAGGCAGTCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
CDS-3UTR TCA 90 bp AGAGAAAGAGAGCAGTGGGTCAGAGTTGGCCCCAGCATAGCCAAGTTGGGTGGAAGAGCTGCTCACTGCTaGTGTCAAGGAGGCTGTGGG +
Preference number: 4 (lower is better)
Translates to: REREQWVRVGPSIAKLGGRAAHC*CQGGCG
Trigger: CCCACAGCCTCCTTGACATCAGCAGTGAGCAGCTCT...TCCACCCAACTTGGCTATGCTGGGGCCAACTCTGACCCACTGCTCTCTTTCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
CDS-3UTR TCA 90 bp CTCAGATGGGTAGAGCTGACTGTGGGTCGCTTCTCACTGGAGGGACTGCCTCTGTCATCTTCAGACTGGTaGAGGCGTGCTGGTCAATGG +
Preference number: 4 (lower is better)
Translates to: LRWVELTVGRFSLEGLPLSSSDW*RRAGQW
Trigger: CCATTGACCAGCACGCCTTCACCAGTCTGAAGATGA...CAGAGGCAGTCCCTCCAGTGAGAAGCGACCCACAGTCAGCTCTACCCATCTGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
CDS-3UTR CCA 90 bp GGTCAGAGTTGGCCCCAGCATAGCCAAGTTGGGTGGAGGCTAGGCTGGGGGTGGAGGCCACTGAAGCAATaGAATGTGTTGGAGGAAATG +
Preference number: 4 (lower is better)
Translates to: GQSWPQHSQVGWRLGWGWRPLKQ*NVLEEM
Trigger: CATTTCCTCCAACACATTCCATTGCTTCAGTGGCCT...CCACCCCCAGCCTAGCCTCCACCCAACTTGGCTATGCTGGGGCCAACTCTGACC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
CDS-3UTR CCA 90 bp CTCAGATGGGTAGAGCTGACTGTGGGTCGCTTCTCACTGGAGGGACTGCCTCTGGTTAGGTCCAGTTCCTaGAGGCCACTGAAGCAATGG +
Preference number: 4 (lower is better)
Translates to: LRWVELTVGRFSLEGLPLVRSSS*RPLKQW
Trigger: CCATTGCTTCAGTGGCCTCCAGGAACTGGACCTAAC...CAGAGGCAGTCCCTCCAGTGAGAAGCGACCCACAGTCAGCTCTACCCATCTGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
CDS-3UTR TCA 90 bp CTCAGATGGGTAGAGCTGACTGTGGGTCGCTTCTCACTGGAGGGACTGCCTCTGTCTAGGAGTTCTAGCTaGGGGCATTCTTTGAATGCC +
Preference number: 4 (lower is better)
Translates to: LRWVELTVGRFSLEGLPLSRSSS*GHSLNA
Trigger: GGCATTCAAAGAATGCCCTCAGCTAGAACTCCTAGA...CAGAGGCAGTCCCTCCAGTGAGAAGCGACCCACAGTCAGCTCTACCCATCTGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
CDS-3UTR GCA 90 bp GGTCAGAGTTGGCCCCAGCATAGCCAAGTTGGGTGGAGGCTAGGCTGGGGGTGGAAATGTTTGAGCAAGTaGAGTCAAGGGGATTTTGTC +
Preference number: 4 (lower is better)
Translates to: GQSWPQHSQVGWRLGWGWKCLSK*SQGDFV
Trigger: GACAAAATCCCCTTGACTGCACTTGCTCAAACATTT...CCACCCCCAGCCTAGCCTCCACCCAACTTGGCTATGCTGGGGCCAACTCTGACC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
CDS-3UTR CCA 90 bp GAGATCTCTCTTCAAGAAGCTGGCCAAGCAGCCTTCTCCTTTGCTCCACACCAGGATCTGAGGATGTGGTaGCTCGGCAACTGGCCAAGA +
Preference number: 4 (lower is better)
Translates to: EISLQEAGQAAFSFAPHQDLRMW*LGNWPR
Trigger: TCTTGGCCAGTTGCCGAGCCACCACATCCTCAGATC...CTGGTGTGGAGCAAAGGAGAAGGCTGCTTGGCCAGCTTCTTGAAGAGAGATCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170878.2
ENSMUST00000172138.2
CDS-3UTR TCA 90 bp GAGATCTCTCTTCAAGAAGCTGGCCAAGCAGCCTTCTCCTTTGCTCCACACCAGAATGCACTTCTGATCTaGGGATGTGGTGGCTCGGCA +
Preference number: 4 (lower is better)
Translates to: EISLQEAGQAAFSFAPHQNALLI*GCGGSA
Trigger: TGCCGAGCCACCACATCCTCAGATCAGAAGTGCATT...CTGGTGTGGAGCAAAGGAGAAGGCTGCTTGGCCAGCTTCTTGAAGAGAGATCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170878.2
ENSMUST00000172138.2
CDS-3UTR TCA 90 bp GGTCAGAGTTGGCCCCAGCATAGCCAAGTTGGGTGGAGGCTAGGCTGGGGGTGGTGCCAGGAATTTCATTaGGACCTAAATTTTCACAGT +
Preference number: 4 (lower is better)
Translates to: GQSWPQHSQVGWRLGWGWCQEFH*DLNFHS
Trigger: ACTGTGAAAATTTAGGTCTCAATGAAATTCCTGGCA...CCACCCCCAGCCTAGCCTCCACCCAACTTGGCTATGCTGGGGCCAACTCTGACC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
CDS-3UTR GCA 90 bp GGGACTGCCTCTGTGTCTCACAGCCATGTCTGGTCCTCCAACCACAGTACCATGAAATTAATGGTCCTCTaGTGGGACAAGATGGGGAGG +
Preference number: 4 (lower is better)
Translates to: GTASVSHSHVWSSNHSTMKLMVL*WDKMGR
Trigger: CCTCCCCATCTTGTCCCAGCAGAGGACCATTAATTT...CATGGTACTGTGGTTGGAGGACCAGACATGGCTGTGAGACACAGAGGCAGTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
CDS-3UTR CCA 90 bp TTAGGAGGAGATCTCTCTTCAAGAAGCTGGCCAAGCAGCCTTCTCCTTTGCTCCGATCTGAGGATGTGGTaGCTCGGCAACTGGCCAAGA +
Preference number: 4 (lower is better)
Translates to: LGGDLSSRSWPSSLLLCSDLRMW*LGNWPR
Trigger: TCTTGGCCAGTTGCCGAGCCACCACATCCTCAGATC...GGAGCAAAGGAGAAGGCTGCTTGGCCAGCTTCTTGAAGAGAGATCTCCTCCTAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170878.2
ENSMUST00000172138.2
CDS-3UTR TCA 90 bp CTCCACTTAGGAGGAGATCTCTCTTCAAGAAGCTGGCCAAGCAGCCTTCTCCTTAATGCACTTCTGATCTaGGGATGTGGTGGCTCGGCA +
Preference number: 4 (lower is better)
Translates to: LHLGGDLSSRSWPSSLLLNALLI*GCGGSA
Trigger: TGCCGAGCCACCACATCCTCAGATCAGAAGTGCATT...AAGGAGAAGGCTGCTTGGCCAGCTTCTTGAAGAGAGATCTCCTCCTAAGTGGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000170878.2
ENSMUST00000172138.2
CDS-3UTR TCA 90 bp CTGCCTCTGTGTCTCACAGCCATGTCTGGTCCTCCAACCACAGTACCATGGAAGTTCTCAATGCACTTCTaGTCTGAGGATGTGGTGGCT +
Preference number: 4 (lower is better)
Translates to: LPLCLTAMSGPPTTVPWKFSMHF*SEDVVA
Trigger: AGCCACCACATCCTCAGATCAGAAGTGCATTGAGAA...CTTCCATGGTACTGTGGTTGGAGGACCAGACATGGCTGTGAGACACAGAGGCAG
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
CDS-3UTR GCA 90 bp CTGCCTCTGTGTCTCACAGCCATGTCTGGTCCTCCAACCACAGTACCATGGAAGGAACAGATGCTTCAATaGCTTAGGCCCACTAAGTGC +
Preference number: 4 (lower is better)
Translates to: LPLCLTAMSGPPTTVPWKEQMLQ*LRPTKC
Trigger: GCACTTAGTGGGCCTAAGGCATTGAAGCATCTGTTC...CTTCCATGGTACTGTGGTTGGAGGACCAGACATGGCTGTGAGACACAGAGGCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
CDS-3UTR CCA 90 bp AGAGAAAGAGAGCAGTGGGTCAGAGTTGGCCCCAGCATAGCCAAGTTGGGTGGACTTCAGCTTCTCTGTTaGGAAACCTTTGGGGAGCTT +
Preference number: 4 (lower is better)
Translates to: REREQWVRVGPSIAKLGGLQLLC*ETFGEL
Trigger: AAGCTCCCCAAAGGTTTCCCAACAGAGAAGCTGAAG...TCCACCCAACTTGGCTATGCTGGGGCCAACTCTGACCCACTGCTCTCTTTCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
CDS-3UTR TCA 90 bp GAAGGTTCTGAGCCCTGTGCTTCTCTGTCTCCACTTAGGAGGAGATCTCTCTTCTTCTCAATGCACTTCTaGTCTGAGGATGTGGTGGCT +
Preference number: 4 (lower is better)
Translates to: EGSEPCASLSPLRRRSLFFSMHF*SEDVVA
Trigger: AGCCACCACATCCTCAGATCAGAAGTGCATTGAGAA...GAAGAGAGATCTCCTCCTAAGTGGAGACAGAGAAGCACAGGGCTCAGAACCTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170878.2
CDS-3UTR TCA 90 bp AATGCTCTTCTTTCTCAGATGGGTAGAGCTGACTGTGGGTCGCTTCTCACTGGATTCAGGCTCTGTAAGTaGGACAGGTTTCGGAGTTGC +
Preference number: 4 (lower is better)
Translates to: NALLSQMGRADCGSLLTGFRLCK*DRFRSC
Trigger: GCAACTCCGAAACCTGTCTCACTTACAGAGCCTGAA...TCCAGTGAGAAGCGACCCACAGTCAGCTCTACCCATCTGAGAAAGAAGAGCATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
CDS-3UTR TCA 90 bp AGAAAGAGAGCAGTGGGTCAGAGTTGGCCCCAGCATAGCCAAGTTGGGTGGAGGTCCCAGTGTCTGAAGTaGGTTGGTCTTTTGAATATT +
Preference number: 4 (lower is better)
Translates to: RKRAVGQSWPQHSQVGWRSQCLK*VGLLNI
Trigger: AATATTCAAAAGACCAACTCACTTCAGACACTGGGA...CCTCCACCCAACTTGGCTATGCTGGGGCCAACTCTGACCCACTGCTCTCTTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
CDS-3UTR GCA 90 bp ACTGGAGGGACTGCCTCTGTGTCTCACAGCCATGTCTGGTCCTCCAACCACAGTTTCGGAGTTGCAGGTTaGAACAATCAGAAGTTTCAA +
Preference number: 4 (lower is better)
Translates to: TGGTASVSHSHVWSSNHSFGVAG*NNQKFQ
Trigger: TTGAAACTTCTGATTGTTGCAACCTGCAACTCCGAA...ACTGTGGTTGGAGGACCAGACATGGCTGTGAGACACAGAGGCAGTCCCTCCAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
3UTR CAA 72 bp TTACACACTTGTGCACGTGAACACACACCCCTTTGTTaGCACACATGCGTACTGATGGCTCCCTCATCTACC +
Preference number: 4 (lower is better)
Translates to: LHTCAREHTPLC*HTCVLMAPSST
Trigger: GGTAGATGAGGGAGCCATCAGTACGCATGTGTGCAAACAAAGGGGTGTGTGTTCACGTGCACAAGTGTGTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171267.2
CDS-3UTR TCA 90 bp ACTCATATGAGTAAGACATATGTTCAGAAAAGCTCAGTGAACCCCCAGCCCAGCAATGCACTTCTGATCTaGGGATGTGGTGGCTCGGCA +
Preference number: 4 (lower is better)
Translates to: THMSKTYVQKSSVNPQPSNALLI*GCGGSA
Trigger: TGCCGAGCCACCACATCCTCAGATCAGAAGTGCATT...GCTGGGCTGGGGGTTCACTGAGCTTTTCTGAACATATGTCTTACTCATATGAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
CDS-3UTR TCA 90 bp GGGACTGCCTCTGTGTCTCACAGCCATGTCTGGTCCTCCAACCACAGTACCATGTTCCCTTTTGGAAAGTaGTTTCCCTGTAAGTTCAAA +
Preference number: 4 (lower is better)
Translates to: GTASVSHSHVWSSNHSTMFPFGK*FPCKFK
Trigger: TTTGAACTTACAGGGAAATCACTTTCCAAAAGGGAA...CATGGTACTGTGGTTGGAGGACCAGACATGGCTGTGAGACACAGAGGCAGTCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
CDS-3UTR GCA 90 bp AGAGAAAGAGAGCAGTGGGTCAGAGTTGGCCCCAGCATAGCCAAGTTGGGTGGATGGAGGAAATATGGTTaGTTCCGAGATAGAGACTTT +
Preference number: 4 (lower is better)
Translates to: REREQWVRVGPSIAKLGGWRKYG*FRDRDF
Trigger: AAAGTCTCTATCTCGGAAGCAACCATATTTCCTCCA...TCCACCCAACTTGGCTATGCTGGGGCCAACTCTGACCCACTGCTCTCTTTCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
CDS-3UTR TCA 90 bp CTGCCTCTGTGTCTCACAGCCATGTCTGGTCCTCCAACCACAGTACCATGGAAGAGTGAGTTGGTCTTTTaGATATTCCCTTTTGGAAAG +
Preference number: 4 (lower is better)
Translates to: LPLCLTAMSGPPTTVPWKSELVF*IFPFGK
Trigger: CTTTCCAAAAGGGAATATTCAAAAGACCAACTCACT...CTTCCATGGTACTGTGGTTGGAGGACCAGACATGGCTGTGAGACACAGAGGCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
CDS-3UTR TCA 90 bp AGACTTAGCTCGCGTGAGGATTATTTTAAGAAGGTTCTGAGCCCTGTGCTTCTCCTCTCAATGCACTTCTaGTCTGAGGATGTGGTGGCT +
Preference number: 4 (lower is better)
Translates to: RLSSREDYFKKVLSPVLLLSMHF*SEDVVA
Trigger: AGCCACCACATCCTCAGATCAGAAGTGCATTGAGAG...GAGAAGCACAGGGCTCAGAACCTTCTTAAAATAATCCTCACGCGAGCTAAGTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000172138.2
CDS-3UTR GCA 90 bp AATGCTCTTCTTTCTCAGATGGGTAGAGCTGACTGTGGGTCGCTTCTCACTGGATGGATGAAGAACAGATaGTTCAATGCCTTAGGCCCA +
Preference number: 4 (lower is better)
Translates to: NALLSQMGRADCGSLLTGWMKNR*FNALGP
Trigger: TGGGCCTAAGGCATTGAAGCATCTGTTCTTCATCCA...TCCAGTGAGAAGCGACCCACAGTCAGCTCTACCCATCTGAGAAAGAAGAGCATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
CDS-3UTR CCA 90 bp ATTAGTGGCTTGCTGGAGAGAGCTCATATCTTCTTTAGACAGGTAATGGATAGCGATCTGAGGATGTGGTaGCTCGGCAACTGGCCAAGA +
Preference number: 4 (lower is better)
Translates to: ISGLLERAHIFFRQVMDSDLRMW*LGNWPR
Trigger: TCTTGGCCAGTTGCCGAGCCACCACATCCTCAGATC...GCTATCCATTACCTGTCTAAAGAAGATATGAGCTCTCTCCAGCAAGCCACTAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167144.2
CDS-3UTR TCA 90 bp CAGATTAGTGGCTTGCTGGAGAGAGCTCATATCTTCTTTAGACAGGTAATGGATAATGCACTTCTGATCTaGGGATGTGGTGGCTCGGCA +
Preference number: 4 (lower is better)
Translates to: QISGLLERAHIFFRQVMDNALLI*GCGGSA
Trigger: TGCCGAGCCACCACATCCTCAGATCAGAAGTGCATT...ATCCATTACCTGTCTAAAGAAGATATGAGCTCTCTCCAGCAAGCCACTAATCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167144.2
CDS-3UTR CCA 90 bp GAAAAGTCTGGTCACTCAAGGATGACAGTTTCTTCACTTGGGACAATTTTGCTAGATCTGAGGATGTGGTaGCTCGGCAACTGGCCAAGA +
Preference number: 4 (lower is better)
Translates to: EKSGHSRMTVSSLGTILLDLRMW*LGNWPR
Trigger: TCTTGGCCAGTTGCCGAGCCACCACATCCTCAGATC...TAGCAAAATTGTCCCAAGTGAAGAAACTGTCATCCTTGAGTGACCAGACTTTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
CDS-3UTR CCA 90 bp ATAGCACTCGGAATGCATTTCTTAGGAAAGGATAAACACACAAGCAGCTTCTCTGATCTGAGGATGTGGTaGCTCGGCAACTGGCCAAGA +
Preference number: 4 (lower is better)
Translates to: IALGMHFLGKDKHTSSFSDLRMW*LGNWPR
Trigger: TCTTGGCCAGTTGCCGAGCCACCACATCCTCAGATC...AGAGAAGCTGCTTGTGTGTTTATCCTTTCCTAAGAAATGCATTCCGAGTGCTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171267.2
3UTR CAA 72 bp AGCCTCAGGCTTCTCTCTTCTTTCCACATATGCAAGTaGCACACCCTCACTTGCTTTGGATATTTCTGCCCA +
Preference number: 4 (lower is better)
Translates to: SLRLLSSFHICK*HTLTCFGYFCP
Trigger: TGGGCAGAAATATCCAAAGCAAGTGAGGGTGTGCAACTTGCATATGTGGAAAGAAGAGAGAAGCCTGAGGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171267.2
CDS-3UTR TCA 90 bp CCTCACTTGCTTTGGATATTTCTGCCCATTTGTTCTGAAACATTGCTTCAGCATAATGCACTTCTGATCTaGGGATGTGGTGGCTCGGCA +
Preference number: 4 (lower is better)
Translates to: PHLLWIFLPICSETLLQHNALLI*GCGGSA
Trigger: TGCCGAGCCACCACATCCTCAGATCAGAAGTGCATT...ATGCTGAAGCAATGTTTCAGAACAAATGGGCAGAAATATCCAAAGCAAGTGAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171267.2
CDS-3UTR TCA 90 bp TCCACATATGCAAGTTGCACACCCTCACTTGCTTTGGATATTTCTGCCCATTTGTTCTCAATGCACTTCTaGTCTGAGGATGTGGTGGCT +
Preference number: 4 (lower is better)
Translates to: STYASCTPSLALDISAHLFSMHF*SEDVVA
Trigger: AGCCACCACATCCTCAGATCAGAAGTGCATTGAGAA...CAAATGGGCAGAAATATCCAAAGCAAGTGAGGGTGTGCAACTTGCATATGTGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171267.2
CDS-3UTR TCA 90 bp ATTAGTGGCTTGCTGGAGAGAGCTCATATCTTCTTTAGACAGGTAATGGATAGCTCCTCAATGCACTTCTaGTCTGAGGATGTGGTGGCT +
Preference number: 4 (lower is better)
Translates to: ISGLLERAHIFFRQVMDSSSMHF*SEDVVA
Trigger: AGCCACCACATCCTCAGATCAGAAGTGCATTGAGGA...GCTATCCATTACCTGTCTAAAGAAGATATGAGCTCTCTCCAGCAAGCCACTAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167144.2
CDS-3UTR TCA 90 bp CTAATAGAAAAGTCTGGTCACTCAAGGATGACAGTTTCTTCACTTGGGACAATTGTTCCTGGAGGCCACTaGAGCAATGGAATGTGTTGG +
Preference number: 4 (lower is better)
Translates to: LIEKSGHSRMTVSSLGTIVPGGH*SNGMCW
Trigger: CCAACACATTCCATTGCTTCAGTGGCCTCCAGGAAC...AATTGTCCCAAGTGAAGAAACTGTCATCCTTGAGTGACCAGACTTTTCTATTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
CDS-3UTR TCA 90 bp ACTCATATGAGTAAGACATATGTTCAGAAAAGCTCAGTGAACCCCCAGCCCAGCGGAAATTGGAAGCACTaGTTTGGCACAAATTCTCAA +
Preference number: 4 (lower is better)
Translates to: THMSKTYVQKSSVNPQPSGNWKH*FGTNSQ
Trigger: TTGAGAATTTGTGCCAAATCAGTGCTTCCAATTTCC...GCTGGGCTGGGGGTTCACTGAGCTTTTCTGAACATATGTCTTACTCATATGAGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
CDS-3UTR GCA 90 bp CATATGAGTAAGACATATGTTCAGAAAAGCTCAGTGAACCCCCAGCCCAGCCCTGTGTCCTCGAGTTTTTaGATGTTTTCTTTGTACCAT +
Preference number: 4 (lower is better)
Translates to: HMSKTYVQKSSVNPQPSPVSSSF*MFSLYH
Trigger: ATGGTACAAAGAAAACATGCAAAAACTCGAGGACAC...AGGGCTGGGCTGGGGGTTCACTGAGCTTTTCTGAACATATGTCTTACTCATATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
CDS-3UTR CCA 90 bp CTAATAGAAAAGTCTGGTCACTCAAGGATGACAGTTTCTTCACTTGGGACAATTATGTCAAGGAGGCTGTaGGAGAGATTCAGCACCTTC +
Preference number: 4 (lower is better)
Translates to: LIEKSGHSRMTVSSLGTIMSRRL*ERFSTF
Trigger: GAAGGTGCTGAATCTCTCCCACAGCCTCCTTGACAT...AATTGTCCCAAGTGAAGAAACTGTCATCCTTGAGTGACCAGACTTTTCTATTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
CDS-3UTR TCA 90 bp CTTAGCTCGCGTGAGGATTATTTTAAGAAGGTTCTGAGCCCTGTGCTTCTCTGTTGCCAGGAATTTCATTaGGACCTAAATTTTCACAGT +
Preference number: 4 (lower is better)
Translates to: LSSREDYFKKVLSPVLLCCQEFH*DLNFHS
Trigger: ACTGTGAAAATTTAGGTCTCAATGAAATTCCTGGCA...ACAGAGAAGCACAGGGCTCAGAACCTTCTTAAAATAATCCTCACGCGAGCTAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170878.2
CDS-3UTR TCA 90 bp ACACTGAATCAATTACACACTTGTGCACGTGAACACACACCCCTTTGTTTGCACTGCCAGGAATTTCATTaGGACCTAAATTTTCACAGT +
Preference number: 4 (lower is better)
Translates to: TLNQLHTCAREHTPLCLHCQEFH*DLNFHS
Trigger: ACTGTGAAAATTTAGGTCTCAATGAAATTCCTGGCA...GTGCAAACAAAGGGGTGTGTGTTCACGTGCACAAGTGTGTAATTGATTCAGTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171267.2
CDS-3UTR GCA 90 bp AGTGGCTTGCTGGAGAGAGCTCATATCTTCTTTAGACAGGTAATGGATAGCATTTGGAGGAAATATGGTTaGTTCCGAGATAGAGACTTT +
Preference number: 4 (lower is better)
Translates to: SGLLERAHIFFRQVMDSIWRKYG*FRDRDF
Trigger: AAAGTCTCTATCTCGGAAGCAACCATATTTCCTCCA...AATGCTATCCATTACCTGTCTAAAGAAGATATGAGCTCTCTCCAGCAAGCCACT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167144.2
CDS-3UTR CCA 90 bp GAAAAGTCTGGTCACTCAAGGATGACAGTTTCTTCACTTGGGACAATTTTGCTACTGGATATTCCTGTTTaGATGAAGAACAGATGCTTC +
Preference number: 4 (lower is better)
Translates to: EKSGHSRMTVSSLGTILLLDIPV*MKNRCF
Trigger: GAAGCATCTGTTCTTCATCCAAACAGGAATATCCAG...TAGCAAAATTGTCCCAAGTGAAGAAACTGTCATCCTTGAGTGACCAGACTTTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
CDS-3UTR GCA 90 bp CTAATAGAAAAGTCTGGTCACTCAAGGATGACAGTTTCTTCACTTGGGACAATTACTAAGTGCTGTCTCTaGCATAAATATCAGGGGATT +
Preference number: 4 (lower is better)
Translates to: LIEKSGHSRMTVSSLGTITKCCL*HKYQGI
Trigger: AATCCCCTGATATTTATGGCAGAGACAGCACTTAGT...AATTGTCCCAAGTGAAGAAACTGTCATCCTTGAGTGACCAGACTTTTCTATTAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
CDS-3UTR CCA 90 bp GAAAAGTCTGGTCACTCAAGGATGACAGTTTCTTCACTTGGGACAATTTTGCTACCAAAGTTTAAACTTTaGAAGACAGCTGAGTCGAAA +
Preference number: 4 (lower is better)
Translates to: EKSGHSRMTVSSLGTILLPKFKL*KTAESK
Trigger: TTTCGACTCAGCTGTCTTCCAAAGTTTAAACTTTGG...TAGCAAAATTGTCCCAAGTGAAGAAACTGTCATCCTTGAGTGACCAGACTTTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
3UTR CAA 72 bp CACTCAAGGATGACAGTTTCTTCACTTGGGACAATTTaGCTAAACACATTTATCTGCCTTCTCTGGAAATCT +
Preference number: 4 (lower is better)
Translates to: HSRMTVSSLGTI*LNTFICLLWKS
Trigger: AGATTTCCAGAGAAGGCAGATAAATGTGTTTAGCAAAATTGTCCCAAGTGAAGAAACTGTCATCCTTGAGTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
3UTR CAA 72 bp CATGCTAAGCATACATTCTACCAATGGGCTATAGTCTaGCTCTTTTCTCATCAGGTATATGCAAAAGGAGTT +
Preference number: 4 (lower is better)
Translates to: HAKHTFYQWAIV*LFSHQVYAKGV
Trigger: AACTCCTTTTGCATATACCTGATGAGAAAAGAGCAAGACTATAGCCCATTGGTAGAATGTATGCTTAGCATG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171267.2
CDS-3UTR TCA 90 bp CTAATAGAAAAGTCTGGTCACTCAAGGATGACAGTTTCTTCACTTGGGACAATTATATTCCTGTTTGGATaGAGAACAGATGCTTCAATG +
Preference number: 4 (lower is better)
Translates to: LIEKSGHSRMTVSSLGTIIFLFG*RTDASM
Trigger: CATTGAAGCATCTGTTCTTCATCCAAACAGGAATAT...AATTGTCCCAAGTGAAGAAACTGTCATCCTTGAGTGACCAGACTTTTCTATTAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
CDS-3UTR CCA 90 bp AAAGTCTGGTCACTCAAGGATGACAGTTTCTTCACTTGGGACAATTTTGCTAAAAACCGATGTTGGCTTTaGAAAGTATCTTCATGTATC +
Preference number: 4 (lower is better)
Translates to: KVWSLKDDSFFTWDNFAKNRCWL*KVSSCI
Trigger: GATACATGAAGATACTTTCCAAAGCCAACATCGGTT...TTTAGCAAAATTGTCCCAAGTGAAGAAACTGTCATCCTTGAGTGACCAGACTTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
CDS-3UTR CCA 90 bp CTAGGAACTAATAGAAAAGTCTGGTCACTCAAGGATGACAGTTTCTTCACTTGGTTGGAAGCACTGATTTaGCACAAATTCTCAAACTTA +
Preference number: 4 (lower is better)
Translates to: LGTNRKVWSLKDDSFFTWLEALI*HKFSNL
Trigger: TAAGTTTGAGAATTTGTGCCAAATCAGTGCTTCCAA...CCAAGTGAAGAAACTGTCATCCTTGAGTGACCAGACTTTTCTATTAGTTCCTAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
CDS-3UTR CAA 90 bp AGTTGGCCCCAGCATAGCCAAGTTGGGTGGAGGCTAGGCTGGGGGTGGGAGCCATCTGTTGGGAAACCTTaGGGGAGCTTAATGGAGGAA +
Preference number: 5 (lower is better)
Translates to: SWPQHSQVGWRLGWGWEPSVGKP*GSLMEE
Trigger: TTCCTCCATTAAGCTCCCCAAAGGTTTCCCAACAGA...TGGCTCCCACCCCCAGCCTAGCCTCCACCCAACTTGGCTATGCTGGGGCCAACT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
CDS-3UTR CAA 90 bp AGAAAGAGAGCAGTGGGTCAGAGTTGGCCCCAGCATAGCCAAGTTGGGTGGAGGGTAAGGGAGGGGAAATaGGAAGCACTGATTTGGCAC +
Preference number: 5 (lower is better)
Translates to: RKRAVGQSWPQHSQVGWRVREGK*EALIWH
Trigger: GTGCCAAATCAGTGCTTCCAATTTCCCCTCCCTTAC...CCTCCACCCAACTTGGCTATGCTGGGGCCAACTCTGACCCACTGCTCTCTTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
CDS-3UTR CAA 90 bp GGTCAGAGTTGGCCCCAGCATAGCCAAGTTGGGTGGAGGCTAGGCTGGGGGTGGACTTTCCAAGGTTTTTaGATTGTGCAGTGGGATAAA +
Preference number: 5 (lower is better)
Translates to: GQSWPQHSQVGWRLGWGWTFQGF*IVQWDK
Trigger: TTTATCCCACTGCACAATCAAAAAACCTTGGAAAGT...CCACCCCCAGCCTAGCCTCCACCCAACTTGGCTATGCTGGGGCCAACTCTGACC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
CDS-3UTR CAA 90 bp GCAGTGGGTCAGAGTTGGCCCCAGCATAGCCAAGTTGGGTGGAGGCTAGGCTGGGAGTTCTTCAAACCCTaGAAGATAACTAGCAAGTTC +
Preference number: 5 (lower is better)
Translates to: AVGQSWPQHSQVGWRLGWEFFKP*KITSKF
Trigger: GAACTTGCTAGTTATCTTCAAGGGTTTGAAGAACTC...CCAGCCTAGCCTCCACCCAACTTGGCTATGCTGGGGCCAACTCTGACCCACTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
CDS TCA 90 bp TCAAATGCTGGAGTGCTGGCAGGCCATCGAAGAGCTGCTCACTGCTaGTGTCAAGGAGGCTGTGGGAGAGATTCAGCACCTTCAAAAGAT +
Preference number: 5 (lower is better)
Translates to: SNAGVLAGHRRAAHC*CQGGCGRDSAPSKD
Trigger: ATCTTTTGAAGGTGCTGAATCTCTCCCACAGCCTCCTTGACATCAGCAGTGAGCAGCTCTTCGATGGCCTGCCAGCACTCCAGCATTTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
CDS TCA 90 bp CCAGTACCGAGCTCAAGTCTCTTCGTGTTGCCCTTGATGGAAAGGTaGGTAAGGGAGGGGAAATTGGAAGCACTGATTTGGCACAAATTC +
Preference number: 5 (lower is better)
Translates to: PVPSSSLFVLPLMER*VREGKLEALIWHKF
Trigger: GAATTTGTGCCAAATCAGTGCTTCCAATTTCCCCTCCCTTACTCACCTTTCCATCAAGGGCAACACGAAGAGACTTGAGCTCGGTACTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
CDS CCA 90 bp TCAATACTGGATATTCCTCAATGCACTTCTGATCTGAGGATGTGGTaGCTCGGCAACTGGCCAAGAAGAGGGCCACTAAAAAGAAGCAGC +
Preference number: 5 (lower is better)
Translates to: SILDIPQCTSDLRMW*LGNWPRRGPLKRSS
Trigger: GCTGCTTCTTTTTAGTGGCCCTCTTCTTGGCCAGTTGCCGAGCCACCACATCCTCAGATCAGAAGTGCATTGAGGAATATCCAGTATTGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000167144.2
CDS-3UTR CAA 90 bp ACTGGAGGGACTGCCTCTGTGTCTCACAGCCATGTCTGGTCCTCCAACCACAGTAACATTCTGTTGAGTTaGGTAAAGTGCCAGGAATTT +
Preference number: 5 (lower is better)
Translates to: TGGTASVSHSHVWSSNHSNILLS*VKCQEF
Trigger: AAATTCCTGGCACTTTACCAAACTCAACAGAATGTT...ACTGTGGTTGGAGGACCAGACATGGCTGTGAGACACAGAGGCAGTCCCTCCAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
CDS-3UTR CAA 90 bp AATGCTCTTCTTTCTCAGATGGGTAGAGCTGACTGTGGGTCGCTTCTCACTGGATCCAGGAAGGTGAGATaGATAAGTCTGCTGAAGGTC +
Preference number: 5 (lower is better)
Translates to: NALLSQMGRADCGSLLTGSRKVR*ISLLKV
Trigger: GACCTTCAGCAGACTTATCAATCTCACCTTCCTGGA...TCCAGTGAGAAGCGACCCACAGTCAGCTCTACCCATCTGAGAAAGAAGAGCATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
CDS-3UTR CAA 90 bp AGAGAAAGAGAGCAGTGGGTCAGAGTTGGCCCCAGCATAGCCAAGTTGGGTGGATGTGTCCTCGAGTTTTaGCATGTTTTCTTTGTACCA +
Preference number: 5 (lower is better)
Translates to: REREQWVRVGPSIAKLGGCVLEF*HVFFVP
Trigger: TGGTACAAAGAAAACATGCAAAAACTCGAGGACACA...TCCACCCAACTTGGCTATGCTGGGGCCAACTCTGACCCACTGCTCTCTTTCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
CDS-3UTR CAA 90 bp AAGTTTCTCCTGCTTAAACCGGTCCCTGTCATCTGGAGAGAGCCTCCCGGGTTCAACATTCTGTTGAGTTaGGTAAAGTGCCAGGAATTT +
Preference number: 5 (lower is better)
Translates to: KFLLLKPVPVIWREPPGFNILLS*VKCQEF
Trigger: AAATTCCTGGCACTTTACCAAACTCAACAGAATGTT...GAACCCGGGAGGCTCTCTCCAGATGACAGGGACCGGTTTAAGCAGGAGAAACTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170878.2
CDS-3UTR CAA 90 bp AGAGAAAGAGAGCAGTGGGTCAGAGTTGGCCCCAGCATAGCCAAGTTGGGTGGAAAGCAATGGAATGTGTaGGAGGAAATGTTGAAGAAA +
Preference number: 5 (lower is better)
Translates to: REREQWVRVGPSIAKLGGKQWNV*EEMLKK
Trigger: TTTCTTCAACATTTCCTCCAACACATTCCATTGCTT...TCCACCCAACTTGGCTATGCTGGGGCCAACTCTGACCCACTGCTCTCTTTCTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
CDS TCA 90 bp TTTTCACAGTTGTATGTTTTGTTGACTTCTTTCTCAATGCACTTCTaGTCTGAGGATGTGGTGGCTCGGCAACTGGCCAAGAAGAGGGCC +
Preference number: 5 (lower is better)
Translates to: FSQLYVLLTSFSMHF*SEDVVARQLAKKRA
Trigger: GGCCCTCTTCTTGGCCAGTTGCCGAGCCACCACATCCTCAGATCAGAAGTGCATTGAGAAAGAAGTCAACAAAACATACAACTGTGAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022124.10
ENSMUST00000170878.2
ENSMUST00000171267.2
CDS TCA 90 bp TCTTTCACCTTTAGTCGAGTAAATGCCAAATCTAGGAGTTCTAGCTaGGGGCATTCTTTGAATGCCTCCGTCTTGAGGCTCAGGGGTTCA +
Preference number: 5 (lower is better)
Translates to: SFTFSRVNAKSRSSS*GHSLNASVLRLRGS
Trigger: TGAACCCCTGAGCCTCAAGACGGAGGCATTCAAAGAATGCCCTCAGCTAGAACTCCTAGATTTGGCATTTACTCGACTAAAGGTGAAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
CDS CCA 90 bp AAATCAATACTGGATATTCCTCAATGCACTTCTGATCTGAGGATGTaGTGGCTCGGCAACTGGCCAAGAAGAGGGCCACTAAAAAGAAGC +
Preference number: 5 (lower is better)
Translates to: KSILDIPQCTSDLRM*WLGNWPRRGPLKRS
Trigger: GCTTCTTTTTAGTGGCCCTCTTCTTGGCCAGTTGCCGAGCCACCACATCCTCAGATCAGAAGTGCATTGAGGAATATCCAGTATTGATTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000167144.2
CDS-3UTR CAA 90 bp TCTCCACTTAGGAGGAGATCTCTCTTCAAGAAGCTGGCCAAGCAGCCTTCTCCTGTGCCAGGAATTTCATaGAGACCTAAATTTTCACAG +
Preference number: 5 (lower is better)
Translates to: SPLRRRSLFKKLAKQPSPVPGIS*RPKFSQ
Trigger: CTGTGAAAATTTAGGTCTCAATGAAATTCCTGGCAC...AGGAGAAGGCTGCTTGGCCAGCTTCTTGAAGAGAGATCTCCTCCTAAGTGGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170878.2
CDS-3UTR CAA 90 bp CATATGAGTAAGACATATGTTCAGAAAAGCTCAGTGAACCCCCAGCCCAGCCCTGCTGAAGGTCGTGTTTaGAATGGTAGGCAAGACATT +
Preference number: 5 (lower is better)
Translates to: HMSKTYVQKSSVNPQPSPAEGRV*NGRQDI
Trigger: AATGTCTTGCCTACCATTCAAAACACGACCTTCAGC...AGGGCTGGGCTGGGGGTTCACTGAGCTTTTCTGAACATATGTCTTACTCATATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
CDS-3UTR CAA 90 bp AGACTTAGCTCGCGTGAGGATTATTTTAAGAAGGTTCTGAGCCCTGTGCTTCTCTCCAGGAAGGTGAGATaGATAAGTCTGCTGAAGGTC +
Preference number: 5 (lower is better)
Translates to: RLSSREDYFKKVLSPVLLSRKVR*ISLLKV
Trigger: GACCTTCAGCAGACTTATCAATCTCACCTTCCTGGA...GAGAAGCACAGGGCTCAGAACCTTCTTAAAATAATCCTCACGCGAGCTAAGTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170878.2
CDS TCA 90 bp GCCTGTTGTGACTCAGGTCTACATGATTCATCATCTTCAGACTGGTaGAGGCGTGCTGGTCAATGGAGGAGAGATCACAAAAGGATAAAA +
Preference number: 5 (lower is better)
Translates to: ACCDSGLHDSSSSDW*RRAGQWRRDHKRIK
Trigger: TTTTATCCTTTTGTGATCTCTCCTCCATTGACCAGCACGCCTTCACCAGTCTGAAGATGATGAATCATGTAGACCTGAGTCACAACAGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
CDS-3UTR CAA 90 bp CACTTAGGAGGAGATCTCTCTTCAAGAAGCTGGCCAAGCAGCCTTCTCCTTTGCCAGTTGTATGTTTTGTaGACTTCTTTCTCAATGCAC +
Preference number: 5 (lower is better)
Translates to: HLGGDLSSRSWPSSLLLCQLYVL*TSFSMH
Trigger: GTGCATTGAGAAAGAAGTCAACAAAACATACAACTG...GCAAAGGAGAAGGCTGCTTGGCCAGCTTCTTGAAGAGAGATCTCCTCCTAAGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170878.2
CDS-3UTR CAA 90 bp AGCTCGCGTGAGGATTATTTTAAGAAGGTTCTGAGCCCTGTGCTTCTCTGTCTCACTCCAAACATTCTGTaGAGTTTGGTAAAGTGCCAG +
Preference number: 5 (lower is better)
Translates to: SSREDYFKKVLSPVLLCLTPNIL*SLVKCQ
Trigger: CTGGCACTTTACCAAACTCAACAGAATGTTTGGAGT...GAGACAGAGAAGCACAGGGCTCAGAACCTTCTTAAAATAATCCTCACGCGAGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170878.2
CDS-3UTR CAA 90 bp CTTAGCTCGCGTGAGGATTATTTTAAGAAGGTTCTGAGCCCTGTGCTTCTCTGTGCTGAAGGTCGTGTTTaGAATGGTAGGCAAGACATT +
Preference number: 5 (lower is better)
Translates to: LSSREDYFKKVLSPVLLCAEGRV*NGRQDI
Trigger: AATGTCTTGCCTACCATTCAAAACACGACCTTCAGC...ACAGAGAAGCACAGGGCTCAGAACCTTCTTAAAATAATCCTCACGCGAGCTAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170878.2
CDS-3UTR CAA 90 bp CTAGGAACTAATAGAAAAGTCTGGTCACTCAAGGATGACAGTTTCTTCACTTGGTTGAATGCCTCCGTCTaGAGGCTCAGGGGTTCATTG +
Preference number: 5 (lower is better)
Translates to: LGTNRKVWSLKDDSFFTWLNASV*RLRGSL
Trigger: CAATGAACCCCTGAGCCTCAAGACGGAGGCATTCAA...CCAAGTGAAGAAACTGTCATCCTTGAGTGACCAGACTTTTCTATTAGTTCCTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
CDS-3UTR CAA 90 bp ATTAGTGGCTTGCTGGAGAGAGCTCATATCTTCTTTAGACAGGTAATGGATAGCTCTGTTGGGAAACCTTaGGGGAGCTTAATGGAGGAA +
Preference number: 5 (lower is better)
Translates to: ISGLLERAHIFFRQVMDSSVGKP*GSLMEE
Trigger: TTCCTCCATTAAGCTCCCCAAAGGTTTCCCAACAGA...GCTATCCATTACCTGTCTAAAGAAGATATGAGCTCTCTCCAGCAAGCCACTAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000167144.2
CDS CCA 90 bp ATATCTTCGTCATCCATGTCCTCAAATGTCCCCAGCCAAAGAGACTaGATCGTAGAGTTCTTCAAACCCTTGAAGATAACTAGCAAGTTC +
Preference number: 5 (lower is better)
Translates to: ISSSSMSSNVPSQRD*IVEFFKPLKITSKF
Trigger: GAACTTGCTAGTTATCTTCAAGGGTTTGAAGAACTCTACGATCCAGTCTCTTTGGCTGGGGACATTTGAGGACATGGATGACGAAGATAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
CDS TCA 90 bp TGGATCGTAGAGTTCTTCAAACCCTTGAAGATAACTAGCAAGTTCTaGGTCCCTCCAAAGTTTAAACTTTGGAAGACAGCTGAGTCGAAA +
Preference number: 5 (lower is better)
Translates to: WIVEFFKPLKITSKF*VPPKFKLWKTAESK
Trigger: TTTCGACTCAGCTGTCTTCCAAAGTTTAAACTTTGGAGGGACTCAGAACTTGCTAGTTATCTTCAAGGGTTTGAAGAACTCTACGATCCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
CDS GCA 90 bp GGGATAAAATCAATACTGGATATTCCTGTTTGGATGAAGAACAGATaGTTCAATGCCTTAGGCCCACTAAGTGCTGTCTCTGCCATAAAT +
Preference number: 5 (lower is better)
Translates to: GIKSILDIPVWMKNR*FNALGPLSAVSAIN
Trigger: ATTTATGGCAGAGACAGCACTTAGTGGGCCTAAGGCATTGAAGCATCTGTTCTTCATCCAAACAGGAATATCCAGTATTGATTTTATCCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
CDS-3UTR CAA 90 bp ATAGCACTCGGAATGCATTTCTTAGGAAAGGATAAACACACAAGCAGCTTCTCTACTCCAAACATTCTGTaGAGTTTGGTAAAGTGCCAG +
Preference number: 5 (lower is better)
Translates to: IALGMHFLGKDKHTSSFSTPNIL*SLVKCQ
Trigger: CTGGCACTTTACCAAACTCAACAGAATGTTTGGAGT...AGAGAAGCTGCTTGTGTGTTTATCCTTTCCTAAGAAATGCATTCCGAGTGCTAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171267.2
CDS-3UTR CAA 90 bp TATCGGAGACACTTGGGATGTAGAATACAGTTTTGCTTAAGTAAAATGTCAAGGTCCAGGAAGGTGAGATaGATAAGTCTGCTGAAGGTC +
Preference number: 5 (lower is better)
Translates to: YRRHLGCRIQFCLSKMSRSRKVR*ISLLKV
Trigger: GACCTTCAGCAGACTTATCAATCTCACCTTCCTGGA...CCTTGACATTTTACTTAAGCAAAACTGTATTCTACATCCCAAGTGTCTCCGATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171267.2
CDS-3UTR CAA 90 bp CTAATAGAAAAGTCTGGTCACTCAAGGATGACAGTTTCTTCACTTGGGACAATTACTCCAAACATTCTGTaGAGTTTGGTAAAGTGCCAG +
Preference number: 5 (lower is better)
Translates to: LIEKSGHSRMTVSSLGTITPNIL*SLVKCQ
Trigger: CTGGCACTTTACCAAACTCAACAGAATGTTTGGAGT...AATTGTCCCAAGTGAAGAAACTGTCATCCTTGAGTGACCAGACTTTTCTATTAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
CDS-3UTR CAA 90 bp ACTATGTGTCAGATGATAGATGGGGAAATGCTTCTTGAACTGGAAAACAGTAAAGCTGAAGGTCGTGTTTaGAATGGTAGGCAAGACATT +
Preference number: 5 (lower is better)
Translates to: TMCQMIDGEMLLELENSKAEGRV*NGRQDI
Trigger: AATGTCTTGCCTACCATTCAAAACACGACCTTCAGC...TTTACTGTTTTCCAGTTCAAGAAGCATTTCCCCATCTATCATCTGACACATAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171267.2
CDS-3UTR CAA 90 bp ATTAGTGGCTTGCTGGAGAGAGCTCATATCTTCTTTAGACAGGTAATGGATAGCACTTTCCAAGGTTTTTaGATTGTGCAGTGGGATAAA +
Preference number: 5 (lower is better)
Translates to: ISGLLERAHIFFRQVMDSTFQGF*IVQWDK
Trigger: TTTATCCCACTGCACAATCAAAAAACCTTGGAAAGT...GCTATCCATTACCTGTCTAAAGAAGATATGAGCTCTCTCCAGCAAGCCACTAAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000167144.2
CDS-3UTR CAA 90 bp GAAAAGTCTGGTCACTCAAGGATGACAGTTTCTTCACTTGGGACAATTTTGCTACAGTTGTATGTTTTGTaGACTTCTTTCTCAATGCAC +
Preference number: 5 (lower is better)
Translates to: EKSGHSRMTVSSLGTILLQLYVL*TSFSMH
Trigger: GTGCATTGAGAAAGAAGTCAACAAAACATACAACTG...TAGCAAAATTGTCCCAAGTGAAGAAACTGTCATCCTTGAGTGACCAGACTTTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
CDS-3UTR CAA 90 bp CTAATAGAAAAGTCTGGTCACTCAAGGATGACAGTTTCTTCACTTGGGACAATTGTGCCAGGAATTTCATaGAGACCTAAATTTTCACAG +
Preference number: 5 (lower is better)
Translates to: LIEKSGHSRMTVSSLGTIVPGIS*RPKFSQ
Trigger: CTGTGAAAATTTAGGTCTCAATGAAATTCCTGGCAC...AATTGTCCCAAGTGAAGAAACTGTCATCCTTGAGTGACCAGACTTTTCTATTAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
CDS-3UTR CAA 90 bp ATAGCACTCGGAATGCATTTCTTAGGAAAGGATAAACACACAAGCAGCTTCTCTAACATTCTGTTGAGTTaGGTAAAGTGCCAGGAATTT +
Preference number: 5 (lower is better)
Translates to: IALGMHFLGKDKHTSSFSNILLS*VKCQEF
Trigger: AAATTCCTGGCACTTTACCAAACTCAACAGAATGTT...AGAGAAGCTGCTTGTGTGTTTATCCTTTCCTAAGAAATGCATTCCGAGTGCTAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171267.2
CDS-3UTR CAA 90 bp ACTATGTGTCAGATGATAGATGGGGAAATGCTTCTTGAACTGGAAAACAGTAAACAGTTGTATGTTTTGTaGACTTCTTTCTCAATGCAC +
Preference number: 5 (lower is better)
Translates to: TMCQMIDGEMLLELENSKQLYVL*TSFSMH
Trigger: GTGCATTGAGAAAGAAGTCAACAAAACATACAACTG...TTTACTGTTTTCCAGTTCAAGAAGCATTTCCCCATCTATCATCTGACACATAGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000171267.2
CDS TCA 72 bp GGAGTGCTGGCAGGCCATCGAAGAGCTGCTCACTGCTaGTGTCAAGGAGGCTGTGGGAGAGATTCAGCACCT +
Preference number: 6 (lower is better)
Translates to: GVLAGHRRAAHC*CQGGCGRDSAP
Trigger: AGGTGCTGAATCTCTCCCACAGCCTCCTTGACATCAGCAGTGAGCAGCTCTTCGATGGCCTGCCAGCACTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
CDS GCA 72 bp TTCAAATGCTGGAGTGCTGGCAGGCCATCGAAGAGCTaGTCACTGCTGATGTCAAGGAGGCTGTGGGAGAGA +
Preference number: 6 (lower is better)
Translates to: FKCWSAGRPSKS*SLLMSRRLWER
Trigger: TCTCTCCCACAGCCTCCTTGACATCAGCAGTGAGCAGCTCTTCGATGGCCTGCCAGCACTCCAGCATTTGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
CDS TCA 72 bp CTTAGTCCCACAAGTCCAGAAGGCAATTCACTCAGGTaGGTGGCTGTTAGGTCCAGTTCCTGGAGGCCACTG +
Preference number: 6 (lower is better)
Translates to: LSPTSPEGNSLR*VAVRSSSWRPL
Trigger: CAGTGGCCTCCAGGAACTGGACCTAACAGCCACTCACCTGAGTGAATTGCCTTCTGGACTTGTGGGACTAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
CDS TCA 72 bp TCTCCTAGACAGACAGCTCTCAATGCACTTCTGATCTaGGGATGTGGTGGCTCGGCAACTGGCCAAGAAGAG +
Preference number: 6 (lower is better)
Translates to: SPRQTALNALLI*GCGGSATGQEE
Trigger: CTCTTCTTGGCCAGTTGCCGAGCCACCACATCCTCAGATCAGAAGTGCATTGAGAGCTGTCTGTCTAGGAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000172138.2
CDS CCA 72 bp CTGGATATTCCTCAATGCACTTCTGATCTGAGGATGTaGTGGCTCGGCAACTGGCCAAGAAGAGGGCCACTA +
Preference number: 6 (lower is better)
Translates to: LDIPQCTSDLRM*WLGNWPRRGPL
Trigger: TAGTGGCCCTCTTCTTGGCCAGTTGCCGAGCCACCACATCCTCAGATCAGAAGTGCATTGAGGAATATCCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167144.2
CDS CCA 72 bp GACAGCTCTCAATGCACTTCTGATCTGAGGATGTGGTaGCTCGGCAACTGGCCAAGAAGAGGGCCACTAAAA +
Preference number: 6 (lower is better)
Translates to: DSSQCTSDLRMW*LGNWPRRGPLK
Trigger: TTTTAGTGGCCCTCTTCTTGGCCAGTTGCCGAGCCACCACATCCTCAGATCAGAAGTGCATTGAGAGCTGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000172138.2
CDS CCA 72 bp TCGAAGAGCTGCTCACTGCTGATGTCAAGGAGGCTGTaGGAGAGATTCAGCACCTTCAAAAGATGGAGGTTC +
Preference number: 6 (lower is better)
Translates to: SKSCSLLMSRRL*ERFSTFKRWRF
Trigger: GAACCTCCATCTTTTGAAGGTGCTGAATCTCTCCCACAGCCTCCTTGACATCAGCAGTGAGCAGCTCTTCGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
CDS CCA 72 bp CTTCTTTCTCAATGCACTTCTGATCTGAGGATGTGGTaGCTCGGCAACTGGCCAAGAAGAGGGCCACTAAAA +
Preference number: 6 (lower is better)
Translates to: LLSQCTSDLRMW*LGNWPRRGPLK
Trigger: TTTTAGTGGCCCTCTTCTTGGCCAGTTGCCGAGCCACCACATCCTCAGATCAGAAGTGCATTGAGAAAGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022124.10
ENSMUST00000170878.2
ENSMUST00000171267.2
CDS CCA 72 bp GATATTCCTCAATGCACTTCTGATCTGAGGATGTGGTaGCTCGGCAACTGGCCAAGAAGAGGGCCACTAAAA +
Preference number: 6 (lower is better)
Translates to: DIPQCTSDLRMW*LGNWPRRGPLK
Trigger: TTTTAGTGGCCCTCTTCTTGGCCAGTTGCCGAGCCACCACATCCTCAGATCAGAAGTGCATTGAGGAATATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167144.2
CDS TCA 72 bp TGTTTTGTTGACTTCTTTCTCAATGCACTTCTGATCTaGGGATGTGGTGGCTCGGCAACTGGCCAAGAAGAG +
Preference number: 6 (lower is better)
Translates to: CFVDFFLNALLI*GCGGSATGQEE
Trigger: CTCTTCTTGGCCAGTTGCCGAGCCACCACATCCTCAGATCAGAAGTGCATTGAGAAAGAAGTCAACAAAACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022124.10
ENSMUST00000170878.2
ENSMUST00000171267.2
CDS TCA 72 bp GACTCAGGTCTACATGATTCATCATCTTCAGACTGGTaGAGGCGTGCTGGTCAATGGAGGAGAGATCACAAA +
Preference number: 6 (lower is better)
Translates to: DSGLHDSSSSDW*RRAGQWRRDHK
Trigger: TTTGTGATCTCTCCTCCATTGACCAGCACGCCTTCACCAGTCTGAAGATGATGAATCATGTAGACCTGAGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
CDS TCA 72 bp AATCAATACTGGATATTCCTCAATGCACTTCTGATCTaGGGATGTGGTGGCTCGGCAACTGGCCAAGAAGAG +
Preference number: 6 (lower is better)
Translates to: NQYWIFLNALLI*GCGGSATGQEE
Trigger: CTCTTCTTGGCCAGTTGCCGAGCCACCACATCCTCAGATCAGAAGTGCATTGAGGAATATCCAGTATTGATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167144.2
CDS GCA 72 bp GAAGAACAGATGCTTCAATGCCTTAGGCCCACTAAGTaGTGTCTCTGCCATAAATATCAGGGGATTTGCGGT +
Preference number: 6 (lower is better)
Translates to: EEQMLQCLRPTK*CLCHKYQGICG
Trigger: ACCGCAAATCCCCTGATATTTATGGCAGAGACAGCACTTAGTGGGCCTAAGGCATTGAAGCATCTGTTCTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
CDS TCA 72 bp TTGTATGTTTTGTTGACTTCTTTCTCAATGCACTTCTaGTCTGAGGATGTGGTGGCTCGGCAACTGGCCAAG +
Preference number: 6 (lower is better)
Translates to: LYVLLTSFSMHF*SEDVVARQLAK
Trigger: CTTGGCCAGTTGCCGAGCCACCACATCCTCAGATCAGAAGTGCATTGAGAAAGAAGTCAACAAAACATACAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022124.10
ENSMUST00000170878.2
ENSMUST00000171267.2
CDS TCA 72 bp TTTAGTCGAGTAAATGCCAAATCTAGGAGTTCTAGCTaGGGGCATTCTTTGAATGCCTCCGTCTTGAGGCTC +
Preference number: 6 (lower is better)
Translates to: FSRVNAKSRSSS*GHSLNASVLRL
Trigger: GAGCCTCAAGACGGAGGCATTCAAAGAATGCCCTCAGCTAGAACTCCTAGATTTGGCATTTACTCGACTAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
CDS GCA 72 bp TGCAGTGGGATAAAATCAATACTGGATATTCCTCAATaGACTTCTGATCTGAGGATGTGGTGGCTCGGCAAC +
Preference number: 6 (lower is better)
Translates to: CSGIKSILDIPQ*TSDLRMWWLGN
Trigger: GTTGCCGAGCCACCACATCCTCAGATCAGAAGTGCATTGAGGAATATCCAGTATTGATTTTATCCCACTGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000167144.2
CDS GCA 72 bp GGATATTCCTGTTTGGATGAAGAACAGATGCTTCAATaGCTTAGGCCCACTAAGTGCTGTCTCTGCCATAAA +
Preference number: 6 (lower is better)
Translates to: GYSCLDEEQMLQ*LRPTKCCLCHK
Trigger: TTTATGGCAGAGACAGCACTTAGTGGGCCTAAGGCATTGAAGCATCTGTTCTTCATCCAAACAGGAATATCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
CDS CCA 72 bp TCATCCATGTCCTCAAATGTCCCCAGCCAAAGAGACTaGATCGTAGAGTTCTTCAAACCCTTGAAGATAACT +
Preference number: 6 (lower is better)
Translates to: SSMSSNVPSQRD*IVEFFKPLKIT
Trigger: AGTTATCTTCAAGGGTTTGAAGAACTCTACGATCCAGTCTCTTTGGCTGGGGACATTTGAGGACATGGATGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
CDS CAA 90 bp GTCTTCCCAGTGTCTGAAGTGAGTTGGTCTTTTGAATATTCCCTTTaGGAAAGTGATTTCCCTGTAAGTTCAAATGCTGGAGTGCTGGCA +
Preference number: 6 (lower is better)
Translates to: VFPVSEVSWSFEYSL*ESDFPVSSNAGVLA
Trigger: TGCCAGCACTCCAGCATTTGAACTTACAGGGAAATCACTTTCCAAAAGGGAATATTCAAAAGACCAACTCACTTCAGACACTGGGAAGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
CDS CAA 72 bp GTGCAGTGGGATAAAATCAATACTGGATATTCCTGTTaGGATGAAGAACAGATGCTTCAATGCCTTAGGCCC +
Preference number: 6 (lower is better)
Translates to: VQWDKINTGYSC*DEEQMLQCLRP
Trigger: GGGCCTAAGGCATTGAAGCATCTGTTCTTCATCCAAACAGGAATATCCAGTATTGATTTTATCCCACTGCAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
CDS CCA 72 bp TGCAGTGGGATAAAATCAATACTGGATATTCCTGTTTaGATGAAGAACAGATGCTTCAATGCCTTAGGCCCA +
Preference number: 6 (lower is better)
Translates to: CSGIKSILDIPV*MKNRCFNALGP
Trigger: TGGGCCTAAGGCATTGAAGCATCTGTTCTTCATCCAAACAGGAATATCCAGTATTGATTTTATCCCACTGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
CDS CAA 72 bp GAAGGTGAGATTGATAAGTCTGCTGAAGGTCGTGTTTaGAATGGTAGGCAAGACATTAAAGCTGAACTCCAA +
Preference number: 6 (lower is better)
Translates to: EGEIDKSAEGRV*NGRQDIKAELQ
Trigger: TTGGAGTTCAGCTTTAATGTCTTGCCTACCATTCAAAACACGACCTTCAGCAGACTTATCAATCTCACCTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022124.10
ENSMUST00000170878.2
ENSMUST00000171267.2
CDS CAA 90 bp TTTTTGATTGTGCAGTGGGATAAAATCAATACTGGATATTCCTGTTaGGATGAAGAACAGATGCTTCAATGCCTTAGGCCCACTAAGTGC +
Preference number: 6 (lower is better)
Translates to: FLIVQWDKINTGYSC*DEEQMLQCLRPTKC
Trigger: GCACTTAGTGGGCCTAAGGCATTGAAGCATCTGTTCTTCATCCAAACAGGAATATCCAGTATTGATTTTATCCCACTGCACAATCAAAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
CDS TCA 72 bp GAGTTCTTCAAACCCTTGAAGATAACTAGCAAGTTCTaGGTCCCTCCAAAGTTTAAACTTTGGAAGACAGCT +
Preference number: 6 (lower is better)
Translates to: EFFKPLKITSKF*VPPKFKLWKTA
Trigger: AGCTGTCTTCCAAAGTTTAAACTTTGGAGGGACTCAGAACTTGCTAGTTATCTTCAAGGGTTTGAAGAACTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10
CDS CAA 72 bp GTGTCTGAAGTGAGTTGGTCTTTTGAATATTCCCTTTaGGAAAGTGATTTCCCTGTAAGTTCAAATGCTGGA +
Preference number: 6 (lower is better)
Translates to: VSEVSWSFEYSL*ESDFPVSSNAG
Trigger: TCCAGCATTTGAACTTACAGGGAAATCACTTTCCAAAAGGGAATATTCAAAAGACCAACTCACTTCAGACAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022124.10