Pregenerated sensors for CD164 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000019818Ensembl transcript IDs: ENSMUST00000019962.15, ENSMUST00000186388.2, ENSMUST00000189300.2
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GATTTCTGCTGCTCACATCAACAGTTACATTCTCAGACCAAGCTTTaGCTCCCACAGTGTGAACACATTTTTCACGACGTCTCAGTCTGT | + |
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Preference number: 1 (lower is better) Translates to: DFCCSHQQLHSQTKL*LPQCEHIFHDVSVC Trigger: ACAGACTGAGACGTCGTGAAAAATGTGTTCACACTGTGGGAGGCAAAGCTTGGTCTGAGAATGTAACTGTTGATGTGAGCAGCAGAAATC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019962.15 |
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| 3UTR GCA 90 bp | GTCAGGGCAGCAGTGAATTCTGTGGCAAGAGCTTTTGTAGAGACTTaGAAAATGTCACTAACTTCCTACAATGTTAGAGCAGTGCTCAAA | + |
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Preference number: 1 (lower is better) Translates to: VRAAVNSVARAFVET*KMSLTSYNVRAVLK Trigger: TTTGAGCACTGCTCTAACATTGTAGGAAGTTAGTGACATTTTGCAAGTCTCTACAAAAGCTCTTGCCACAGAATTCACTGCTGCCCTGAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019962.15 |
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| 3UTR TCA 90 bp | GAACACATTTTTCACGACGTCTCAGTCTGTCTTAAGGCACTGTTCTaGTTTCTTAATACGGTACACTTTATGAGTATGAACAAGACCTGT | + |
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Preference number: 1 (lower is better) Translates to: EHIFHDVSVCLKALF*FLNTVHFMSMNKTC Trigger: ACAGGTCTTGTTCATACTCATAAAGTGTACCGTATTAAGAAATCAGAACAGTGCCTTAAGACAGACTGAGACGTCGTGAAAAATGTGTTC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019962.15 |
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| 3UTR TCA 90 bp | CATATGCTGACATTTATATGGGGCAAGGAGTCACATGGAGGTAAATaGCAAACCAATTTTGCCACCTTTATAAGGAATGGAAATTCTGTG | + |
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Preference number: 1 (lower is better) Translates to: HMLTFIWGKESHGGK*QTNFATFIRNGNSV Trigger: CACAGAATTTCCATTCCTTATAAAGGTGGCAAAATTGGTTTGTCATTTACCTCCATGTGACTCCTTGCCCCATATAAATGTCAGCATATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019962.15 |
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| 3UTR-3UTR CCA 90 bp | CCCTCAATCTGCCTGACGGGTGGTCATTTGGCACTCTTCTCAATTCTGGCCACCACAGCGTCTTCCATGTaGGACTTCTTCAATATTTTG | + |
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Preference number: 2 (lower is better) Translates to: PSICLTGGHLALFSILATTASSM*DFFNIL Trigger: CAAAATATTGAAGAAGTCCCACATGGAAGACGCTGT...GGTGGCCAGAATTGAGAAGAGTGCCAAATGACCACCCGTCAGGCAGATTGAGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019962.15 |
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| 3UTR-3UTR TCA 90 bp | AGTAAAGGCCCAAGGAAGAGAAAAGCCTATTCAGCCAGGGTATCGTCATTGGAAAATCTATGTTTGAAGTaGTGGCCCTCAATCTGCCTG | + |
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Preference number: 2 (lower is better) Translates to: SKGPRKRKAYSARVSSLENLCLK*WPSICL Trigger: CAGGCAGATTGAGGGCCATCACTTCAAACATAGATT...TTCCAATGACGATACCCTGGCTGAATAGGCTTTTCTCTTCCTTGGGCCTTTACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019962.15 |
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| 3UTR-3UTR GCA 90 bp | GTAAAGGCCCAAGGAAGAGAAAAGCCTATTCAGCCAGGGTATCGTCATTGGAAAATGAACAAGACCTGTTaGAGATTAATGTCTGTGTAT | + |
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Preference number: 2 (lower is better) Translates to: VKAQGREKPIQPGYRHWKMNKTC*RLMSVY Trigger: ATACACAGACATTAATCTGCAACAGGTCTTGTTCAT...TTTCCAATGACGATACCCTGGCTGAATAGGCTTTTCTCTTCCTTGGGCCTTTAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019962.15 |
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| 3UTR-3UTR TCA 90 bp | TTGTGCAGCAAGTATGGCAAAGGTAAAATAAGGTATTTGATAGAACTAGATCCTTTGCCTCCCACAGTGTaGACACATTTTTCACGACGT | + |
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Preference number: 2 (lower is better) Translates to: LCSKYGKGKIRYLIELDPLPPTV*THFSRR Trigger: ACGTCGTGAAAAATGTGTTCACACTGTGGGAGGCAA...AGGATCTAGTTCTATCAAATACCTTATTTTACCTTTGCCATACTTGCTGCACAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000019962.15 |
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| 3UTR-3UTR TCA 90 bp | CTGCATGATTATAATGATAGCACATGGGAACTGAAACCAAGGAGGAAGAAAAGAACTTTTCTTCGAGGATaGTGCTCCAAAATATCCTGT | + |
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Preference number: 2 (lower is better) Translates to: LHDYNDSTWELKPRRKKRTFLRG*CSKISC Trigger: ACAGGATATTTTGGAGCATCATCCTCGAAGAAAAGT...TCTTTTCTTCCTCCTTGGTTTCAGTTCCCATGTGCTATCATTATAATCATGCAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000019962.15 |
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| 3UTR CAA 90 bp | AGTGTCTGCTTGTGCAGCAAGTATGGCAAAGGTAAAATAAGGTATTaGATAGAACTAGATCCTCAGGACAAATCAGATGAAAACTCTGAA | + |
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Preference number: 2 (lower is better) Translates to: SVCLCSKYGKGKIRY*IELDPQDKSDENSE Trigger: TTCAGAGTTTTCATCTGATTTGTCCTGAGGATCTAGTTCTATCAAATACCTTATTTTACCTTTGCCATACTTGCTGCACAAGCAGACACT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019962.15 |
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| 3UTR-3UTR TCA 90 bp | GTCTGCTTGTGCAGCAAGTATGGCAAAGGTAAAATAAGGTATTTGATAGAACTAGCTTTCAGAAGCAACTaGAGTAAAAGTCTGCATGAT | + |
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Preference number: 2 (lower is better) Translates to: VCLCSKYGKGKIRYLIELAFRSN*SKSLHD Trigger: ATCATGCAGACTTTTACTTCAGTTGCTTCTGAAAGC...TAGTTCTATCAAATACCTTATTTTACCTTTGCCATACTTGCTGCACAAGCAGAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019962.15 |
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| 3UTR CCA 72 bp | ATGTTTGAAGTGATGGCCCTCAATCTGCCTGACGGGTaGTCATTTGGCACTCTTCTCAATTCTGGCCACCAA | + |
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Preference number: 3 (lower is better) Translates to: MFEVMALNLPDG*SFGTLLNSGHQ Trigger: TTGGTGGCCAGAATTGAGAAGAGTGCCAAATGACCACCCGTCAGGCAGATTGAGGGCCATCACTTCAAACAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019962.15 |
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| 3UTR CCA 72 bp | CCGAGTTGTGGGCTTAGCTGTAGAATTGGTTGGCACTaGAGTGGTAGGAGGTATTACAGAACACAAGTCAGT | + |
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Preference number: 3 (lower is better) Translates to: PSCGLSCRIGWH*SGRRYYRTQVS Trigger: ACTGACTTGTGTTCTGTAATACCTCCTACCACTCCAGTGCCAACCAATTCTACAGCTAAGCCCACAACTCGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186388.2 |
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| 3UTR-3UTR CAA 90 bp | AGTCCCACAGCAGCAGCCATGGTAAACAAAGACGACAGCCACACGGATTCATGCGACTTCTTCAATATTTaGGTTTCAGTGAGTTGCACA | + |
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Preference number: 3 (lower is better) Translates to: SPTAAAMVNKDDSHTDSCDFFNI*VSVSCT Trigger: TGTGCAACTCACTGAAACCAAAATATTGAAGAAGTC...GCATGAATCCGTGTGGCTGTCGTCTTTGTTTACCATGGCTGCTGCTGTGGGACT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019962.15 |
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| 3UTR-3UTR CAA 90 bp | GTAAAGGCCCAAGGAAGAGAAAAGCCTATTCAGCCAGGGTATCGTCATTGGAAATTTGGTTTCAGTGAGTaGCACAAGTTAACTGCCAGT | + |
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Preference number: 3 (lower is better) Translates to: VKAQGREKPIQPGYRHWKFGFSE*HKLTAS Trigger: ACTGGCAGTTAACTTGTGCAACTCACTGAAACCAAA...TTTCCAATGACGATACCCTGGCTGAATAGGCTTTTCTCTTCCTTGGGCCTTTAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019962.15 |
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| 3UTR TCA 72 bp | AGTTTAGTGCTAAACAAATTTAATCTATGTTTGAAGTaGTGGCCCTCAATCTGCCTGACGGGTGGTCATTTG | + |
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Preference number: 3 (lower is better) Translates to: SLVLNKFNLCLK*WPSICLTGGHL Trigger: CAAATGACCACCCGTCAGGCAGATTGAGGGCCATCACTTCAAACATAGATTAAATTTGTTTAGCACTAAACT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019962.15 |
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| 3UTR TCA 72 bp | TTTCACGACGTCTCAGTCTGTCTTAAGGCACTGTTCTaGTTTCTTAATACGGTACACTTTATGAGTATGAAC | + |
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Preference number: 3 (lower is better) Translates to: FHDVSVCLKALF*FLNTVHFMSMN Trigger: GTTCATACTCATAAAGTGTACCGTATTAAGAAATCAGAACAGTGCCTTAAGACAGACTGAGACGTCGTGAAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019962.15 |
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| CDS-3UTR TCA 90 bp | GTAAAGGCCCAAGGAAGAGAAAAGCCTATTCAGCCAGGGTATCGTCATTGGAAATGGGAGCCAGGGTGGTaGTGTTGGGCTGCGCGGCCG | + |
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Preference number: 4 (lower is better) Translates to: VKAQGREKPIQPGYRHWKWEPGW*CWAARP Trigger: CGGCCGCGCAGCCCAACATCACCACCCTGGCTCCCA...TTTCCAATGACGATACCCTGGCTGAATAGGCTTTTCTCTTCCTTGGGCCTTTAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019962.15 |
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| CDS-3UTR TCA 90 bp | CCCTCAATCTGCCTGACGGGTGGTCATTTGGCACTCTTCTCAATTCTGGCCACCAGGAAACACAGCTGTTaGAGCTCGCACAGGTTTCTG | + |
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Preference number: 4 (lower is better) Translates to: PSICLTGGHLALFSILATRKHSC*SSHRFL Trigger: CAGAAACCTGTGCGAGCTTCAACAGCTGTGTTTCCT...GGTGGCCAGAATTGAGAAGAGTGCCAAATGACCACCCGTCAGGCAGATTGAGGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019962.15 |
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| CDS-3UTR CCA 90 bp | AAAAACAGTCCCACAGCAGCAGCCATGGTAAACAAAGACGACAGCCACACGGATGACTTCCGCTCAGGCTaGGAGGTTGGAGTCAGTGTG | + |
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Preference number: 4 (lower is better) Translates to: KNSPTAAAMVNKDDSHTDDFRSG*EVGVSV Trigger: CACACTGACTCCAACCTCCCAGCCTGAGCGGAAGTC...ATCCGTGTGGCTGTCGTCTTTGTTTACCATGGCTGCTGCTGTGGGACTGTTTTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019962.15 |
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| CDS-3UTR TCA 90 bp | ACTGAGGGAGTAGGTGTAGGAGAGGAAGGCCGAGTTGTGGGCTTAGCTGTAGAAAGGAAACACAGCTGTTaGAGCTCGCACAGGTTTCTT | + |
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Preference number: 4 (lower is better) Translates to: TEGVGVGEEGRVVGLAVERKHSC*SSHRFL Trigger: AAGAAACCTGTGCGAGCTTCAACAGCTGTGTTTCCT...TTCTACAGCTAAGCCCACAACTCGGCCTTCCTCTCCTACACCTACTCCCTCAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186388.2 |
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| 3UTR CAA 72 bp | GGAGAGGAAGGCCGAGTTGTGGGCTTAGCTGTAGAATaGGTTGGCACTGGAGTGGTAGGAGGTATTACAGAA | + |
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Preference number: 4 (lower is better) Translates to: GEEGRVVGLAVE*VGTGVVGGITE Trigger: TTCTGTAATACCTCCTACCACTCCAGTGCCAACCAATTCTACAGCTAAGCCCACAACTCGGCCTTCCTCTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186388.2 |
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| CDS-3UTR CCA 90 bp | CCCTCAATCTGCCTGACGGGTGGTCATTTGGCACTCTTCTCAATTCTGGCCACCTCAGTGCGGTTCACCTaGGAACAATTACTTAATGGT | + |
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Preference number: 4 (lower is better) Translates to: PSICLTGGHLALFSILATSVRFT*EQLLNG Trigger: ACCATTAAGTAATTGTTCCCAGGTGAACCGCACTGA...GGTGGCCAGAATTGAGAAGAGTGCCAAATGACCACCCGTCAGGCAGATTGAGGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019962.15 |
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| CDS-3UTR CCA 90 bp | GGTGGTCATTTGGCACTCTTCTCAATTCTGGCCACCAAGTTACACCTGGAACTAAGGTTGGAGTCAGTGTaGTATTTGTTGTCCCTGCTG | + |
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Preference number: 4 (lower is better) Translates to: GGHLALFSILATKLHLELRLESV*YLLSLL Trigger: CAGCAGGGACAACAAATACCACACTGACTCCAACCT...TAGTTCCAGGTGTAACTTGGTGGCCAGAATTGAGAAGAGTGCCAAATGACCACC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019962.15 |
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| CDS-3UTR CCA 90 bp | CAGTCCCACAGCAGCAGCCATGGTAAACAAAGACGACAGCCACACGGATTCATGGTCTTATTTGCTTCTTaGCAATGTAACCAAAAGCAG | + |
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Preference number: 4 (lower is better) Translates to: QSHSSSHGKQRRQPHGFMVLFAS*QCNQKQ Trigger: CTGCTTTTGGTTACATTGCCAAGAAGCAAATAAGAC...CATGAATCCGTGTGGCTGTCGTCTTTGTTTACCATGGCTGCTGCTGTGGGACTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019962.15 |
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| CDS-3UTR CCA 90 bp | GAAGGCCGAGTTGTGGGCTTAGCTGTAGAATTGGTTGGCACTGGAGTGGTAGGAGTCTTATTTGCTTCTTaGCAATGTAACCAAAAGCAG | + |
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Preference number: 4 (lower is better) Translates to: EGRVVGLAVELVGTGVVGVLFAS*QCNQKQ Trigger: CTGCTTTTGGTTACATTGCCAAGAAGCAAATAAGAC...TCCTACCACTCCAGTGCCAACCAATTCTACAGCTAAGCCCACAACTCGGCCTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186388.2 |
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| CDS-3UTR TCA 90 bp | CTGCATGATTATAATGATAGCACATGGGAACTGAAACCAAGGAGGAAGAAAAGAGGACGATCCCTCCAATaGAGCTGGCTGCATCAAAGG | + |
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Preference number: 4 (lower is better) Translates to: LHDYNDSTWELKPRRKKRGRSLQ*SWLHQR Trigger: CCTTTGATGCAGCCAGCTTCATTGGAGGGATCGTCC...TCTTTTCTTCCTCCTTGGTTTCAGTTCCCATGTGCTATCATTATAATCATGCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019962.15 |
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| CDS-3UTR CCA 90 bp | TTGTGCAGCAAGTATGGCAAAGGTAAAATAAGGTATTTGATAGAACTAGATCCTCTCAGGCTGGGAGGTTaGAGTCAGTGTGGTATTTGT | + |
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Preference number: 4 (lower is better) Translates to: LCSKYGKGKIRYLIELDPLRLGG*SQCGIC Trigger: ACAAATACCACACTGACTCCAACCTCCCAGCCTGAG...AGGATCTAGTTCTATCAAATACCTTATTTTACCTTTGCCATACTTGCTGCACAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019962.15 |
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| 3UTR CAA 72 bp | TTGTGCAGCAAGTATGGCAAAGGTAAAATAAGGTATTaGATAGAACTAGATCCTCAGGACAAATCAGATGAA | + |
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Preference number: 4 (lower is better) Translates to: LCSKYGKGKIRY*IELDPQDKSDE Trigger: TTCATCTGATTTGTCCTGAGGATCTAGTTCTATCAAATACCTTATTTTACCTTTGCCATACTTGCTGCACAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019962.15 |
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| CDS-3UTR CAA 90 bp | CAGTCCCACAGCAGCAGCCATGGTAAACAAAGACGACAGCCACACGGATTCATGGGCACCTCGGTCACGTaGGGAGCCAGGGTGGTGATG | + |
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Preference number: 5 (lower is better) Translates to: QSHSSSHGKQRRQPHGFMGTSVT*GARVVM Trigger: CATCACCACCCTGGCTCCCAACGTGACCGAGGTGCC...CATGAATCCGTGTGGCTGTCGTCTTTGTTTACCATGGCTGCTGCTGTGGGACTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019962.15 |
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| CDS GCA 90 bp | AGCCTGCACACCCAAGACAAGGACGATCCCTCCAATGAAGCTGGCTaGATCAAAGGTCGACTTCCGCTCAGGCTGGGAGGTTGGAGTCAG | + |
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Preference number: 5 (lower is better) Translates to: SLHTQDKDDPSNEAG*IKGRLPLRLGGWSQ Trigger: CTGACTCCAACCTCCCAGCCTGAGCGGAAGTCGACCTTTGATGCAGCCAGCTTCATTGGAGGGATCGTCCTTGTCTTGGGTGTGCAGGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019962.15 ENSMUST00000189300.2 |
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| CDS CCA 90 bp | CCTCCAATGAAGCTGGCTGCATCAAAGGTCGACTTCCGCTCAGGCTaGGAGGTTGGAGTCAGTGTGGTATTTGTTGTCCCTGCTGATGTG | + |
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Preference number: 5 (lower is better) Translates to: PPMKLAASKVDFRSG*EVGVSVVFVVPADV Trigger: CACATCAGCAGGGACAACAAATACCACACTGACTCCAACCTCCCAGCCTGAGCGGAAGTCGACCTTTGATGCAGCCAGCTTCATTGGAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019962.15 ENSMUST00000189300.2 |
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| CDS-3UTR CAA 90 bp | ATCTGCCTGACGGGTGGTCATTTGGCACTCTTCTCAATTCTGGCCACCAAGTTAGGCTTAGCTGTAGAATaGGTTGGCACTGGAGTGGTA | + |
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Preference number: 5 (lower is better) Translates to: ICLTGGHLALFSILATKLGLAVE*VGTGVV Trigger: TACCACTCCAGTGCCAACCAATTCTACAGCTAAGCC...TAACTTGGTGGCCAGAATTGAGAAGAGTGCCAAATGACCACCCGTCAGGCAGAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019962.15 |
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| CDS-3UTR CAA 90 bp | GTTGTGGGCTTAGCTGTAGAATTGGTTGGCACTGGAGTGGTAGGAGGTATTACACAGGAAACACAGCTGTaGAAGCTCGCACAGGTTTCT | + |
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Preference number: 5 (lower is better) Translates to: VVGLAVELVGTGVVGGITQETQL*KLAQVS Trigger: AGAAACCTGTGCGAGCTTCAACAGCTGTGTTTCCTG...TGTAATACCTCCTACCACTCCAGTGCCAACCAATTCTACAGCTAAGCCCACAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186388.2 |
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| CDS-3UTR CAA 90 bp | GTAAAGGCCCAAGGAAGAGAAAAGCCTATTCAGCCAGGGTATCGTCATTGGAAACAGGAAACACAGCTGTaGAAGCTCGCACAGGTTTCT | + |
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Preference number: 5 (lower is better) Translates to: VKAQGREKPIQPGYRHWKQETQL*KLAQVS Trigger: AGAAACCTGTGCGAGCTTCAACAGCTGTGTTTCCTG...TTTCCAATGACGATACCCTGGCTGAATAGGCTTTTCTCTTCCTTGGGCCTTTAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019962.15 |
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| CDS CAA 90 bp | GTCGTGGTCGGCACCTCGGTCACGTTGGGAGCCAGGGTGGTGATGTaGGGCTGCGCGGCCGAGACGCAGAGCACGGCGAGGCAGGTGGCG | + |
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Preference number: 6 (lower is better) Translates to: VVVGTSVTLGARVVM*GCAAETQSTARQVA Trigger: CGCCACCTGCCTCGCCGTGCTCTGCGTCTCGGCCGCGCAGCCCAACATCACCACCCTGGCTCCCAACGTGACCGAGGTGCCGACCACGAC 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019962.15 |
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| CDS CAA 72 bp | ACCACTTTGGTGGTCGTGGTCGGCACCTCGGTCACGTaGGGAGCCAGGGTGGTGATGTTGGGCTGCGCGGCC | + |
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Preference number: 6 (lower is better) Translates to: TTLVVVVGTSVT*GARVVMLGCAA Trigger: GGCCGCGCAGCCCAACATCACCACCCTGGCTCCCAACGTGACCGAGGTGCCGACCACGACCACCAAAGTGGT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019962.15 |
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| CDS TCA 72 bp | CAGCCTGCACACCCAAGACAAGGACGATCCCTCCAATaGAGCTGGCTGCATCAAAGGTCGACTTCCGCTCAG | + |
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Preference number: 6 (lower is better) Translates to: QPAHPRQGRSLQ*SWLHQRSTSAQ Trigger: CTGAGCGGAAGTCGACCTTTGATGCAGCCAGCTTCATTGGAGGGATCGTCCTTGTCTTGGGTGTGCAGGCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019962.15 ENSMUST00000189300.2 |
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| CDS GCA 72 bp | ACCCAAGACAAGGACGATCCCTCCAATGAAGCTGGCTaGATCAAAGGTCGACTTCCGCTCAGGCTGGGAGGT | + |
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Preference number: 6 (lower is better) Translates to: TQDKDDPSNEAG*IKGRLPLRLGG Trigger: ACCTCCCAGCCTGAGCGGAAGTCGACCTTTGATGCAGCCAGCTTCATTGGAGGGATCGTCCTTGTCTTGGGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019962.15 ENSMUST00000189300.2 |
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| CDS CAA 72 bp | TTAGTAAAGGTGGCATTAACACAGGAAACACAGCTGTaGAAGCTCGCACAGGTTTCCCGCCGACCGCGGGGC | + |
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Preference number: 6 (lower is better) Translates to: LVKVALTQETQL*KLAQVSRRPRG Trigger: GCCCCGCGGTCGGCGGGAAACCTGTGCGAGCTTCAACAGCTGTGTTTCCTGTGTTAATGCCACCTTTACTAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000189300.2 |
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| CDS CCA 72 bp | AAGCTGGCTGCATCAAAGGTCGACTTCCGCTCAGGCTaGGAGGTTGGAGTCAGTGTGGTATTTGTTGTCCCT | + |
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Preference number: 6 (lower is better) Translates to: KLAASKVDFRSG*EVGVSVVFVVP Trigger: AGGGACAACAAATACCACACTGACTCCAACCTCCCAGCCTGAGCGGAAGTCGACCTTTGATGCAGCCAGCTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019962.15 ENSMUST00000189300.2 |
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| CDS CAA 90 bp | GTAATATTATTAGTAAAGGTGGCATTAACACAGGAAACACAGCTGTaGAAGCTCGCACAGGTTTCCCGCCGACCGCGGGGCGCGTCGCCT | + |
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Preference number: 6 (lower is better) Translates to: VILLVKVALTQETQL*KLAQVSRRPRGASP Trigger: AGGCGACGCGCCCCGCGGTCGGCGGGAAACCTGTGCGAGCTTCAACAGCTGTGTTTCCTGTGTTAATGCCACCTTTACTAATAATATTAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000189300.2 |
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| CDS CAA 90 bp | ACAAGTCAGTGCGGTTCACCTGGGAACAATTACTTAATGGTTCATTaGCACAATAGGTCTTATTTGCTTCTTGGCAATGTAACCAAAAGC | + |
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Preference number: 6 (lower is better) Translates to: TSQCGSPGNNYLMVH*HNRSYLLLGNVTKS Trigger: GCTTTTGGTTACATTGCCAAGAAGCAAATAAGACCTATTGTGCAAATGAACCATTAAGTAATTGTTCCCAGGTGAACCGCACTGACTTGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019962.15 ENSMUST00000189300.2 |
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| CDS CAA 72 bp | TGCGGTTCACCTGGGAACAATTACTTAATGGTTCATTaGCACAATAGGTCTTATTTGCTTCTTGGCAATGTA | + |
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Preference number: 6 (lower is better) Translates to: CGSPGNNYLMVH*HNRSYLLLGNV Trigger: TACATTGCCAAGAAGCAAATAAGACCTATTGTGCAAATGAACCATTAAGTAATTGTTCCCAGGTGAACCGCA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019962.15 ENSMUST00000189300.2 |
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