Pregenerated sensors for CCZ1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029617Ensembl transcript IDs: ENSMUST00000031621.11
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 72 bp | TATTGCTTTACTGTGTCCCTAACCCAGTCACTAGCATaGCCAGTAAGTTGTAATGGTAAACACAAAGGTTGT | + |
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Preference number: 3 (lower is better) Translates to: YCFTVSLTQSLA*PVSCNGKHKGC Trigger: ACAACCTTTGTGTTTACCATTACAACTTACTGGTCATGCTAGTGACTGGGTTAGGGACACAGTAAAGCAATA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031621.11 |
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| CDS-3UTR TCA 90 bp | TCCAAGCAGGTATTGCTTTACTGTGTCCCTAACCCAGTCACTAGCATGACCAGTCAGGCATCTCTGCCCTaGCTGGGGAGTCCCTTCCCG | + |
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Preference number: 4 (lower is better) Translates to: SKQVLLYCVPNPVTSMTSQASLP*LGSPFP Trigger: CGGGAAGGGACTCCCCAGTCAGGGCAGAGATGCCTG...ACTGGTCATGCTAGTGACTGGGTTAGGGACACAGTAAAGCAATACCTGCTTGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031621.11 |
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| CDS-3UTR TCA 90 bp | TCCAAGCAGGTATTGCTTTACTGTGTCCCTAACCCAGTCACTAGCATGACCAGTGCACTGCTGCAGCACTaGGCTGTACACCTTGTCCAA | + |
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Preference number: 4 (lower is better) Translates to: SKQVLLYCVPNPVTSMTSALLQH*AVHLVQ Trigger: TTGGACAAGGTGTACAGCTCAGTGCTGCAGCAGTGC...ACTGGTCATGCTAGTGACTGGGTTAGGGACACAGTAAAGCAATACCTGCTTGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031621.11 |
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| CDS-3UTR GCA 90 bp | AAGCAGGTATTGCTTTACTGTGTCCCTAACCCAGTCACTAGCATGACCAGTAAGATTCCCAGGCATCTCTaGCCTGACTGGGGAGTCCCT | + |
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Preference number: 4 (lower is better) Translates to: KQVLLYCVPNPVTSMTSKIPRHL*PDWGVP Trigger: AGGGACTCCCCAGTCAGGGCAGAGATGCCTGGGAAT...CTTACTGGTCATGCTAGTGACTGGGTTAGGGACACAGTAAAGCAATACCTGCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031621.11 |
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| CDS-3UTR TCA 90 bp | TCCAAGCAGGTATTGCTTTACTGTGTCCCTAACCCAGTCACTAGCATGACCAGTGTGCCTGGGGAACAGTaGGGTGGTGAGGTATTTGTA | + |
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Preference number: 4 (lower is better) Translates to: SKQVLLYCVPNPVTSMTSVPGEQ*GGEVFV Trigger: TACAAATACCTCACCACCTCACTGTTCCCCAGGCAC...ACTGGTCATGCTAGTGACTGGGTTAGGGACACAGTAAAGCAATACCTGCTTGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031621.11 |
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| CDS-3UTR TCA 90 bp | AGAAACCTCAGGGAATCATCAGACCAAGTAGAAATGTGGTTTTCCAAGCAGGTATGGAGGCGTCAATCATaGAGCACACGGCTGCACTCA | + |
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Preference number: 4 (lower is better) Translates to: RNLRESSDQVEMWFSKQVWRRQS*STRLHS Trigger: TGAGTGCAGCCGTGTGCTTCATGATTGACGCCTCCA...TACCTGCTTGGAAAACCACATTTCTACTTGGTCTGATGATTCCCTGAGGTTTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031621.11 |
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| CDS-3UTR CCA 90 bp | GTAAAATACCCATACAATGTCAGCAGAATGGAATGGTATTCAGCTGACTACATTCATCTCTGCCCTGACTaGGGAGTCCCTTCCCGCCAA | + |
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Preference number: 4 (lower is better) Translates to: VKYPYNVSRMEWYSADYIHLCPD*GVPSRQ Trigger: TTGGCGGGAAGGGACTCCCCAGTCAGGGCAGAGATG...AATGTAGTCAGCTGAATACCATTCCATTCTGCTGACATTGTATGGGTATTTTAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031621.11 |
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| CDS-3UTR TCA 90 bp | AGAAACCTCAGGGAATCATCAGACCAAGTAGAAATGTGGTTTTCCAAGCAGGTAAGGTTCGCATTCTTCTaGCTGAGAATCACGTACAGC | + |
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Preference number: 4 (lower is better) Translates to: RNLRESSDQVEMWFSKQVRFAFF*LRITYS Trigger: GCTGTACGTGATTCTCAGTCAGAAGAATGCGAACCT...TACCTGCTTGGAAAACCACATTTCTACTTGGTCTGATGATTCCCTGAGGTTTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031621.11 |
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| CDS-3UTR GCA 90 bp | AGAAACCTCAGGGAATCATCAGACCAAGTAGAAATGTGGTTTTCCAAGCAGGTACATGAAGCACACGGCTaGACTCATGGCCTTATAAAC | + |
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Preference number: 4 (lower is better) Translates to: RNLRESSDQVEMWFSKQVHEAHG*THGLIN Trigger: GTTTATAAGGCCATGAGTGCAGCCGTGTGCTTCATG...TACCTGCTTGGAAAACCACATTTCTACTTGGTCTGATGATTCCCTGAGGTTTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031621.11 |
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| CDS-3UTR CCA 90 bp | CAGGTATTGCTTTACTGTGTCCCTAACCCAGTCACTAGCATGACCAGTAAGTTGACACGGCTGCACTCATaGCCTTATAAACAATTAAAT | + |
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Preference number: 4 (lower is better) Translates to: QVLLYCVPNPVTSMTSKLTRLHS*PYKQLN Trigger: ATTTAATTGTTTATAAGGCCATGAGTGCAGCCGTGT...CAACTTACTGGTCATGCTAGTGACTGGGTTAGGGACACAGTAAAGCAATACCTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031621.11 |
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| CDS-3UTR GCA 90 bp | AAGCAGGTATTGCTTTACTGTGTCCCTAACCCAGTCACTAGCATGACCAGTAAGGTCATTGTAGAGGAATaGTGTATATTTGACTACACT | + |
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Preference number: 4 (lower is better) Translates to: KQVLLYCVPNPVTSMTSKVIVEE*CIFDYT Trigger: AGTGTAGTCAAATATACAGCATTCCTCTACAATGAC...CTTACTGGTCATGCTAGTGACTGGGTTAGGGACACAGTAAAGCAATACCTGCTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031621.11 |
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| CDS-3UTR TCA 90 bp | GTTGTAATGGTAAACACAAAGGTTGTTGAGGTTTTTAAAGATGTTCTGCTGAGCGGAACAGTGAGGTGGTaGGGTATTTGTACAAAATTC | + |
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Preference number: 4 (lower is better) Translates to: VVMVNTKVVEVFKDVLLSGTVRW*GICTKF Trigger: GAATTTTGTACAAATACCTCACCACCTCACTGTTCC...GCTCAGCAGAACATCTTTAAAAACCTCAACAACCTTTGTGTTTACCATTACAAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031621.11 |
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| CDS-3UTR CCA 90 bp | GTTGTAATGGTAAACACAAAGGTTGTTGAGGTTTTTAAAGATGTTCTGCTGAGCGTCTGCAAATACCGATaGAAGAATTTCTCTAATCTT | + |
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Preference number: 4 (lower is better) Translates to: VVMVNTKVVEVFKDVLLSVCKYR*KNFSNL Trigger: AAGATTAGAGAAATTCTTCCATCGGTATTTGCAGAC...GCTCAGCAGAACATCTTTAAAAACCTCAACAACCTTTGTGTTTACCATTACAAC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031621.11 |
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| CDS-3UTR CAA 90 bp | AAGCAGGTATTGCTTTACTGTGTCCCTAACCCAGTCACTAGCATGACCAGTAAGCTTTCCTTTAGGAGCTaGACGCCTCCATCTTCCATG | + |
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Preference number: 5 (lower is better) Translates to: KQVLLYCVPNPVTSMTSKLSFRS*TPPSSM Trigger: CATGGAAGATGGAGGCGTCAAGCTCCTAAAGGAAAG...CTTACTGGTCATGCTAGTGACTGGGTTAGGGACACAGTAAAGCAATACCTGCTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031621.11 |
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| CDS-3UTR CAA 90 bp | TCCAAGCAGGTATTGCTTTACTGTGTCCCTAACCCAGTCACTAGCATGACCAGTTCCACTCCAGATAAGTaGGTCATTGTAGAGGAATGC | + |
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Preference number: 5 (lower is better) Translates to: SKQVLLYCVPNPVTSMTSSTPDK*VIVEEC Trigger: GCATTCCTCTACAATGACCAACTTATCTGGAGTGGA...ACTGGTCATGCTAGTGACTGGGTTAGGGACACAGTAAAGCAATACCTGCTTGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031621.11 |
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| CDS-3UTR CAA 90 bp | TCCAAGCAGGTATTGCTTTACTGTGTCCCTAACCCAGTCACTAGCATGACCAGTCTTGCCATCTTTACTTaGCTTCTCGATGATAGGATT | + |
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Preference number: 5 (lower is better) Translates to: SKQVLLYCVPNPVTSMTSLAIFT*LLDDRI Trigger: AATCCTATCATCGAGAAGCAAAGTAAAGATGGCAAG...ACTGGTCATGCTAGTGACTGGGTTAGGGACACAGTAAAGCAATACCTGCTTGGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031621.11 |
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| CDS-3UTR CAA 90 bp | AAGCAGGTATTGCTTTACTGTGTCCCTAACCCAGTCACTAGCATGACCAGTAAGTTCAGAAACGTCCCATaGAAAAGCTTGTACATGCTG | + |
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Preference number: 5 (lower is better) Translates to: KQVLLYCVPNPVTSMTSKFRNVP*KSLYML Trigger: CAGCATGTACAAGCTTTTCAATGGGACGTTTCTGAA...CTTACTGGTCATGCTAGTGACTGGGTTAGGGACACAGTAAAGCAATACCTGCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031621.11 |
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| CDS-3UTR CAA 90 bp | AAATATTTAACATCTAGAAACCTCAGGGAATCATCAGACCAAGTAGAAATGTGGCAACAGCTCCTCCTCTaGGTACTCCACTACCGCCTT | + |
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Preference number: 5 (lower is better) Translates to: KYLTSRNLRESSDQVEMWQQLLL*VLHYRL Trigger: AAGGCGGTAGTGGAGTACCAAGAGGAGGAGCTGTTG...CCACATTTCTACTTGGTCTGATGATTCCCTGAGGTTTCTAGATGTTAAATATTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031621.11 |
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| CDS-3UTR CAA 90 bp | GTAAAATACCCATACAATGTCAGCAGAATGGAATGGTATTCAGCTGACTACATTTTCTTCACCTCTTCATaGACCTCGATCAGGTTCGCA | + |
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Preference number: 5 (lower is better) Translates to: VKYPYNVSRMEWYSADYIFFTSS*TSIRFA Trigger: TGCGAACCTGATCGAGGTCAATGAAGAGGTGAAGAA...AATGTAGTCAGCTGAATACCATTCCATTCTGCTGACATTGTATGGGTATTTTAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031621.11 |
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| CDS-3UTR CAA 90 bp | AAATATTTAACATCTAGAAACCTCAGGGAATCATCAGACCAAGTAGAAATGTGGCCAGAGATCCTCTTGTaGATATTAAACTGCTCACAG | + |
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Preference number: 5 (lower is better) Translates to: KYLTSRNLRESSDQVEMWPEILL*ILNCSQ Trigger: CTGTGAGCAGTTTAATATCAACAAGAGGATCTCTGG...CCACATTTCTACTTGGTCTGATGATTCCCTGAGGTTTCTAGATGTTAAATATTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031621.11 |
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| CDS TCA 72 bp | TTCCATAGTGCTGAAGATTCCCAGGCATCTCTGCCCTaGCTGGGGAGTCCCTTCCCGCCAACTCAGGTTCGA | + |
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Preference number: 6 (lower is better) Translates to: FHSAEDSQASLP*LGSPFPPTQVR Trigger: TCGAACCTGAGTTGGCGGGAAGGGACTCCCCAGTCAGGGCAGAGATGCCTGGGAATCTTCAGCACTATGGAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031621.11 |
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| CDS CCA 72 bp | ATAGTGCTGAAGATTCCCAGGCATCTCTGCCCTGACTaGGGAGTCCCTTCCCGCCAACTCAGGTTCGATGTG | + |
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Preference number: 6 (lower is better) Translates to: IVLKIPRHLCPD*GVPSRQLRFDV Trigger: CACATCGAACCTGAGTTGGCGGGAAGGGACTCCCCAGTCAGGGCAGAGATGCCTGGGAATCTTCAGCACTAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031621.11 |
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