Pregenerated sensors for CCT8L1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038044Ensembl transcript IDs: ENSMUST00000045016.9
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CGCAGTATCTCCAAATTCCTTCCTGTAAACCTTGTGGCACTTCCCTaGCTCCAGGGGAGGAAGGACCCGGCCGAGCAGAGGAGTGCCCAG | + |
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Preference number: 5 (lower is better) Translates to: RSISKFLPVNLVALP*LQGRKDPAEQRSAQ Trigger: CTGGGCACTCCTCTGCTCGGCCGGGTCCTTCCTCCCCTGGAGCCAGGGAAGTGCCACAAGGTTTACAGGAAGGAATTTGGAGATACTGCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045016.9 |
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| CDS TCA 72 bp | CCTGGCTTCAGCCGCTGGGGAAGTTCTAGGTCTGATTaGACTTTGGTTTGTGTGGCCCGGGAGGGTGGGGAG | + |
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Preference number: 6 (lower is better) Translates to: PGFSRWGSSRSD*TLVCVAREGGE Trigger: CTCCCCACCCTCCCGGGCCACACAAACCAAAGTTCAATCAGACCTAGAACTTCCCCAGCGGCTGAAGCCAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045016.9 |
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| CDS CCA 72 bp | TCAGCCGCTGGGGAAGTTCTAGGTCTGATTGAACTTTaGTTTGTGTGGCCCGGGAGGGTGGGGAGACCGCCA | + |
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Preference number: 6 (lower is better) Translates to: SAAGEVLGLIEL*FVWPGRVGRPP Trigger: TGGCGGTCTCCCCACCCTCCCGGGCCACACAAACCAAAGTTCAATCAGACCTAGAACTTCCCCAGCGGCTGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045016.9 |
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| CDS CCA 72 bp | TCCAAATTCCTTCCTGTAAACCTTGTGGCACTTCCCTaGCTCCAGGGGAGGAAGGACCCGGCCGAGCAGAGG | + |
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Preference number: 6 (lower is better) Translates to: SKFLPVNLVALP*LQGRKDPAEQR Trigger: CCTCTGCTCGGCCGGGTCCTTCCTCCCCTGGAGCCAGGGAAGTGCCACAAGGTTTACAGGAAGGAATTTGGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045016.9 |
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| CDS CAA 90 bp | GACCGTTGGGGCCAGACAGTCGGCTTCCTTTGTCTACCAGCATTTTaGCCAGAGCCATCTCTGTGGCACCTGCTCCTGGCAGTAGTCTGG | + |
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Preference number: 6 (lower is better) Translates to: DRWGQTVGFLCLPAF*PEPSLWHLLLAVVW Trigger: CCAGACTACTGCCAGGAGCAGGTGCCACAGAGATGGCTCTGGCAAAAATGCTGGTAGACAAAGGAAGCCGACTGTCTGGCCCCAACGGTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045016.9 |
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| CDS GCA 72 bp | CAGGGTTTTAGGCAGAGAACTCAGGGCTTGAGCAAATaGTTGGAAGGCCAGACCGTTGGGGCCAGACAGTCG | + |
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Preference number: 6 (lower is better) Translates to: QGFRQRTQGLSK*LEGQTVGARQS Trigger: CGACTGTCTGGCCCCAACGGTCTGGCCTTCCAAGCATTTGCTCAAGCCCTGAGTTCTCTGCCTAAAACCCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045016.9 |
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| CDS CCA 72 bp | TCAGGGCTTGAGCAAATGCTTGGAAGGCCAGACCGTTaGGGCCAGACAGTCGGCTTCCTTTGTCTACCAGCA | + |
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Preference number: 6 (lower is better) Translates to: SGLEQMLGRPDR*GQTVGFLCLPA Trigger: TGCTGGTAGACAAAGGAAGCCGACTGTCTGGCCCCAACGGTCTGGCCTTCCAAGCATTTGCTCAAGCCCTGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045016.9 |
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| CDS TCA 72 bp | TTCTCTGCCAGGGTTTTAGGCAGAGAACTCAGGGCTTaGGCAAATGCTTGGAAGGCCAGACCGTTGGGGCCA | + |
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Preference number: 6 (lower is better) Translates to: FSARVLGRELRA*ANAWKARPLGP Trigger: TGGCCCCAACGGTCTGGCCTTCCAAGCATTTGCTCAAGCCCTGAGTTCTCTGCCTAAAACCCTGGCAGAGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045016.9 |
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| CDS GCA 72 bp | CTGGCCACTATAATTTGGTCCACAGTCACCAGCTGCTaGACCAGCTCAGCAACTGCTTGTAACCCTTGGGCT | + |
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Preference number: 6 (lower is better) Translates to: LATIIWSTVTSC*TSSATACNPWA Trigger: AGCCCAAGGGTTACAAGCAGTTGCTGAGCTGGTGCAGCAGCTGGTGACTGTGGACCAAATTATAGTGGCCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045016.9 |
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| CDS GCA 72 bp | AGAAAATGCATCAATGCCATAGTAGACAGCCTGCTCTaGAACCCGAAGTCCCTGGATGGTGGGTCCCCTAAG | + |
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Preference number: 6 (lower is better) Translates to: RKCINAIVDSLL*NPKSLDGGSPK Trigger: CTTAGGGGACCCACCATCCAGGGACTTCGGGTTGCAGAGCAGGCTGTCTACTATGGCATTGATGCATTTTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045016.9 |
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| CDS TCA 72 bp | CCGAAGTCCCTGGATGGTGGGTCCCCTAAGGACCACTaGGAGAAAAGGTGCAATCTCATGTTCCCATTCAAA | + |
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Preference number: 6 (lower is better) Translates to: PKSLDGGSPKDH*EKRCNLMFPFK Trigger: TTTGAATGGGAACATGAGATTGCACCTTTTCTCTCAGTGGTCCTTAGGGGACCCACCATCCAGGGACTTCGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045016.9 |
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| CDS GCA 72 bp | TTTCTGGCCACTATAATTTGGTCCACAGTCACCAGCTaGTGCACCAGCTCAGCAACTGCTTGTAACCCTTGG | + |
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Preference number: 6 (lower is better) Translates to: FLATIIWSTVTS*CTSSATACNPW Trigger: CCAAGGGTTACAAGCAGTTGCTGAGCTGGTGCAGCAGCTGGTGACTGTGGACCAAATTATAGTGGCCAGAAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045016.9 |
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| CDS CCA 72 bp | AGCTGCTGCACCAGCTCAGCAACTGCTTGTAACCCTTaGGCTTTGGTCCTCAGTATGTCCCATATACCTTCA | + |
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Preference number: 6 (lower is better) Translates to: SCCTSSATACNP*ALVLSMSHIPS Trigger: TGAAGGTATATGGGACATACTGAGGACCAAAGCCCAAGGGTTACAAGCAGTTGCTGAGCTGGTGCAGCAGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045016.9 |
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| CDS CAA 72 bp | GCCGTCTGTTCCCACTCCAACGAAGAAGTTCCCAGCTaGGTGAAATCCACTCAATTCTGCCATCACGCTTTG | + |
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Preference number: 6 (lower is better) Translates to: AVCSHSNEEVPS*VKSTQFCHHAL Trigger: CAAAGCGTGATGGCAGAATTGAGTGGATTTCACCAAGCTGGGAACTTCTTCGTTGGAGTGGGAACAGACGGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045016.9 |
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| CDS CAA 72 bp | CTGTCTGTACAAAGGAGTCTTTCTGGCCACTATAATTaGGTCCACAGTCACCAGCTGCTGCACCAGCTCAGC | + |
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Preference number: 6 (lower is better) Translates to: LSVQRSLSGHYN*VHSHQLLHQLS Trigger: GCTGAGCTGGTGCAGCAGCTGGTGACTGTGGACCAAATTATAGTGGCCAGAAAGACTCCTTTGTACAGACAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045016.9 |
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| CDS CAA 90 bp | GTCTGTGATCTGTCTGTACAAAGGAGTCTTTCTGGCCACTATAATTaGGTCCACAGTCACCAGCTGCTGCACCAGCTCAGCAACTGCTTG | + |
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Preference number: 6 (lower is better) Translates to: VCDLSVQRSLSGHYN*VHSHQLLHQLSNCL Trigger: CAAGCAGTTGCTGAGCTGGTGCAGCAGCTGGTGACTGTGGACCAAATTATAGTGGCCAGAAAGACTCCTTTGTACAGACAGATCACAGAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045016.9 |
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| CDS TCA 72 bp | TCTGTTCCCACTCCAACGAAGAAGTTCCCAGCTTGGTaGAATCCACTCAATTCTGCCATCACGCTTTGGGCA | + |
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Preference number: 6 (lower is better) Translates to: SVPTPTKKFPAW*NPLNSAITLWA Trigger: TGCCCAAAGCGTGATGGCAGAATTGAGTGGATTTCACCAAGCTGGGAACTTCTTCGTTGGAGTGGGAACAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045016.9 |
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| CDS TCA 72 bp | GGGGTGAGGATACCTTTGCATTCAAGGTGGGGTCTGTaGTCTGTCTGTACAAAGGAGTCTTTCTGGCCACTA | + |
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Preference number: 6 (lower is better) Translates to: GVRIPLHSRWGL*SVCTKESFWPL Trigger: TAGTGGCCAGAAAGACTCCTTTGTACAGACAGATCACAGACCCCACCTTGAATGCAAAGGTATCCTCACCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045016.9 |
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| CDS CCA 72 bp | TGTCTGTACAAAGGAGTCTTTCTGGCCACTATAATTTaGTCCACAGTCACCAGCTGCTGCACCAGCTCAGCA | + |
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Preference number: 6 (lower is better) Translates to: CLYKGVFLATII*STVTSCCTSSA Trigger: TGCTGAGCTGGTGCAGCAGCTGGTGACTGTGGACCAAATTATAGTGGCCAGAAAGACTCCTTTGTACAGACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045016.9 |
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