RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CCT6B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020698

Ensembl transcript IDs: ENSMUST00000021040.10, ENSMUST00000100722.5

Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp ATTTTTAGCGCGCCCTTAGGACCCAAGGTGGGACGCAGCACATCCTaGAGCCCACGGGCGGCGCAGATGTTCACAGCCAAGGCCGCTTGG +
Preference number: 5 (lower is better)
Translates to: IFSAPLGPKVGRSTS*SPRAAQMFTAKAAW
Trigger: CCAAGCGGCCTTGGCTGTGAACATCTGCGCCGCCCGTGGGCTGCAGGATGTGCTGCGTCCCACCTTGGGTCCTAAGGGCGCGCTAAAAAT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021040.10
CDS CCA 90 bp TCCTGCAGCCCACGGGCGGCGCAGATGTTCACAGCCAAGGCCGCTTaGCTCCGGGTCACTTCAGCGCCAGGGTTAGCGATTTTGATCGCA +
Preference number: 5 (lower is better)
Translates to: SCSPRAAQMFTAKAA*LRVTSAPGLAILIA
Trigger: TGCGATCAAAATCGCTAACCCTGGCGCTGAAGTGACCCGGAGCCAAGCGGCCTTGGCTGTGAACATCTGCGCCGCCCGTGGGCTGCAGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021040.10
CDS GCA 90 bp GCACGGAGTCCATCTCTTAAGGCGTCCTTGATCTGTATGAGAGTATaGTTATTTGGCCCTTTGACCAACAAGGTGACAGAGAGCGGATTT +
Preference number: 5 (lower is better)
Translates to: ARSPSLKASLICMRV*LFGPLTNKVTESGF
Trigger: AAATCCGCTCTCTGTCACCTTGTTGGTCAAAGGGCCAAATAAGCATACTCTCATACAGATCAAGGACGCCTTAAGAGATGGACTCCGTGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021040.10
ENSMUST00000100722.5
CDS CAA 72 bp CCCACGGGCGGCGCAGATGTTCACAGCCAAGGCCGCTaGGCTCCGGGTCACTTCAGCGCCAGGGTTAGCGAT +
Preference number: 6 (lower is better)
Translates to: PTGGADVHSQGR*APGHFSARVSD
Trigger: ATCGCTAACCCTGGCGCTGAAGTGACCCGGAGCCAAGCGGCCTTGGCTGTGAACATCTGCGCCGCCCGTGGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021040.10
CDS CCA 72 bp CCACGGGCGGCGCAGATGTTCACAGCCAAGGCCGCTTaGCTCCGGGTCACTTCAGCGCCAGGGTTAGCGATT +
Preference number: 6 (lower is better)
Translates to: PRAAQMFTAKAA*LRVTSAPGLAI
Trigger: AATCGCTAACCCTGGCGCTGAAGTGACCCGGAGCCAAGCGGCCTTGGCTGTGAACATCTGCGCCGCCCGTGG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021040.10
CDS CAA 90 bp ATCCTGCAGCCCACGGGCGGCGCAGATGTTCACAGCCAAGGCCGCTaGGCTCCGGGTCACTTCAGCGCCAGGGTTAGCGATTTTGATCGC +
Preference number: 6 (lower is better)
Translates to: ILQPTGGADVHSQGR*APGHFSARVSDFDR
Trigger: GCGATCAAAATCGCTAACCCTGGCGCTGAAGTGACCCGGAGCCAAGCGGCCTTGGCTGTGAACATCTGCGCCGCCCGTGGGCTGCAGGAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021040.10
CDS GCA 72 bp TCTTCACCCAATGCGTACTCGAAGACAAGGCCAGCGTaGCCCAGGCACTCTTCACTCAGGCCTTCAAAGGAG +
Preference number: 6 (lower is better)
Translates to: SSPNAYSKTRPA*PRHSSLRPSKE
Trigger: CTCCTTTGAAGGCCTGAGTGAAGAGTGCCTGGGGCACGCTGGCCTTGTCTTCGAGTACGCATTGGGTGAAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021040.10
ENSMUST00000100722.5
CDS GCA 72 bp TCCCTGCACACGGTGCTTGTAGTTAACAAGAGCTTCTaGTATCGCAACTTCCACTGCCCCAGCCCCTGGAAC +
Preference number: 6 (lower is better)
Translates to: SLHTVLVVNKSF*YRNFHCPSPWN
Trigger: GTTCCAGGGGCTGGGGCAGTGGAAGTTGCGATAGCAGAAGCTCTTGTTAACTACAAGCACCGTGTGCAGGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021040.10
ENSMUST00000100722.5
CDS CAA 72 bp GCCCCTGGAACCACACAGCCGTCTTCAATAGCATTTTaGACCGCACGGAGTCCATCTCTTAAGGCGTCCTTG +
Preference number: 6 (lower is better)
Translates to: APGTTQPSSIAF*TARSPSLKASL
Trigger: CAAGGACGCCTTAAGAGATGGACTCCGTGCGGTCAAAAATGCTATTGAAGACGGCTGTGTGGTTCCAGGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021040.10
ENSMUST00000100722.5
CDS CCA 72 bp ACATTTGAGGTAGTGCCATCCCCTGTGACATGGTCTTaGGCTGCTGCCACTTTTGCAATGATGGAAGCCGTT +
Preference number: 6 (lower is better)
Translates to: TFEVVPSPVTWS*AAATFAMMEAV
Trigger: AACGGCTTCCATCATTGCAAAAGTGGCAGCAGCCCAAGACCATGTCACAGGGGATGGCACTACCTCAAATGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021040.10
ENSMUST00000100722.5
CDS CCA 72 bp ATCAGGACATTTGAGGTAGTGCCATCCCCTGTGACATaGTCTTGGGCTGCTGCCACTTTTGCAATGATGGAA +
Preference number: 6 (lower is better)
Translates to: IRTFEVVPSPVT*SWAAATFAMME
Trigger: TTCCATCATTGCAAAAGTGGCAGCAGCCCAAGACCATGTCACAGGGGATGGCACTACCTCAAATGTCCTGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021040.10
ENSMUST00000100722.5
CDS CAA 72 bp TGCTGCCACTTTTGCAATGATGGAAGCCGTTGGGTGTaGAATTTGCATCTCATGAAGCAGTACATTGCCGTC +
Preference number: 6 (lower is better)
Translates to: CCHFCNDGSRWV*NLHLMKQYIAV
Trigger: GACGGCAATGTACTGCTTCATGAGATGCAAATTCAACACCCAACGGCTTCCATCATTGCAAAAGTGGCAGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021040.10
ENSMUST00000100722.5
CDS TCA 72 bp CAAAACCAATCCTCGGATCAACTGTGTGTCCGTTTCTaGCTTGTGCCTCATCTCCACAATTTCCACCATGAA +
Preference number: 6 (lower is better)
Translates to: QNQSSDQLCVRF*LVPHLHNFHHE
Trigger: TTCATGGTGGAAATTGTGGAGATGAGGCACAAGTCAGAAACGGACACACAGTTGATCCGAGGATTGGTTTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021040.10
ENSMUST00000100722.5
CDS GCA 72 bp ACAAGCAAGGGTGAGCCTTTCAAGATTCCTTCTTTTTaGCCTGCGAAGAGCTACGATGTTATGTTTTGCAAG +
Preference number: 6 (lower is better)
Translates to: TSKGEPFKIPSF*PAKSYDVMFCK
Trigger: CTTGCAAAACATAACATCGTAGCTCTTCGCAGGGCAAAAAGAAGGAATCTTGAAAGGCTCACCCTTGCTTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021040.10
ENSMUST00000100722.5
CDS CAA 72 bp TTCTTTTTGCCCTGCGAAGAGCTACGATGTTATGTTTaGCAAGCATTTCTAAGGAAACCGGATCGATGCCCT +
Preference number: 6 (lower is better)
Translates to: FFLPCEELRCYV*QAFLRKPDRCP
Trigger: AGGGCATCGATCCGGTTTCCTTAGAAATGCTTGCAAAACATAACATCGTAGCTCTTCGCAGGGCAAAAAGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021040.10
ENSMUST00000100722.5