Pregenerated sensors for CCT4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000007739Ensembl transcript IDs: ENSMUST00000020562.5, ENSMUST00000173853.8, ENSMUST00000173867.8, ENSMUST00000174047.8, ENSMUST00000174659.2
Found 60 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ATTCTAGCACTTGGAAGGTACACAGATCAAATGTTCAAGGACAGTTaGGATGTCTCACAAAACAAAAACCTACAAACCAAACAACCACAA | + |
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Preference number: 1 (lower is better) Translates to: ILALGRYTDQMFKDS*DVSQNKNLQTKQPQ Trigger: TTGTGGTTGTTTGGTTTGTAGGTTTTTGTTTTGTGAGACATCTCAACTGTCCTTGAACATTTGATCTGTGTACCTTCCAAGTGCTAGAAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000173867.8 |
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| 3UTR CAA 90 bp | ACAATGTCCAAAAACTCTGAAGCTTCCAGACAAGGAACAAGGTGGTaGTCCTTCATTCCAGCCACAGTACTTCTGTCCATAATGATGCAG | + |
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Preference number: 2 (lower is better) Translates to: TMSKNSEASRQGTRW*SFIPATVLLSIMMQ Trigger: CTGCATCATTATGGACAGAAGTACTGTGGCTGGAATGAAGGACAACCACCTTGTTCCTTGTCTGGAAGCTTCAGAGTTTTTGGACATTGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000173867.8 |
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| 3UTR-3UTR TCA 90 bp | TCATTTGGTAGTATGCCCTGGGTTTCAATCTCAAGAGCTGTACAAACTGGGCGTATGTTCAAGGACAGTTaGGATGTCTCACAAAACAAA | + |
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Preference number: 2 (lower is better) Translates to: SFGSMPWVSISRAVQTGRMFKDS*DVSQNK Trigger: TTTGTTTTGTGAGACATCTCAACTGTCCTTGAACAT...ACGCCCAGTTTGTACAGCTCTTGAGATTGAAACCCAGGGCATACTACCAAATGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173867.8 |
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| 3UTR-3UTR GCA 90 bp | CATTCATTTAAGGTTGACAAGGGAGGATCAAGAGCTGAGATAATCTGCAGGACAACAATTTCAAACAAATaGCAACTGGAAGACAATGTC | + |
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Preference number: 2 (lower is better) Translates to: HSFKVDKGGSRAEIICRTTISNK*QLEDNV Trigger: GACATTGTCTTCCAGTTGGCATTTGTTTGAAATTGT...TGTCCTGCAGATTATCTCAGCTCTTGATCCTCCCTTGTCAACCTTAAATGAATG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173867.8 |
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| 3UTR CAA 90 bp | AATTCTAGCACTTGGAAGGTACACAGATCAAATGTTCAAGGACAGTaGAGATGTCTCACAAAACAAAAACCTACAAACCAAACAACCACA | + |
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Preference number: 2 (lower is better) Translates to: NSSTWKVHRSNVQGQ*RCLTKQKPTNQTTT Trigger: TGTGGTTGTTTGGTTTGTAGGTTTTTGTTTTGTGAGACATCTCAACTGTCCTTGAACATTTGATCTGTGTACCTTCCAAGTGCTAGAATT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000173867.8 |
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| 3UTR-3UTR CAA 90 bp | CATTCATTTAAGGTTGACAAGGGAGGATCAAGAGCTGAGATAATCTGCAGGACAAGGGGGACGGTTCATTaGGTAGTATGCCCTGGGTTT | + |
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Preference number: 3 (lower is better) Translates to: HSFKVDKGGSRAEIICRTRGTVH*VVCPGF Trigger: AAACCCAGGGCATACTACCAAATGAACCGTCCCCCT...TGTCCTGCAGATTATCTCAGCTCTTGATCCTCCCTTGTCAACCTTAAATGAATG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000173867.8 |
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| 3UTR-3UTR CAA 90 bp | CATTCATTTAAGGTTGACAAGGGAGGATCAAGAGCTGAGATAATCTGCAGGACACAAGGAACAAGGTGGTaGTCCTTCATTCCAGCCACA | + |
|
Preference number: 3 (lower is better) Translates to: HSFKVDKGGSRAEIICRTQGTRW*SFIPAT Trigger: TGTGGCTGGAATGAAGGACAACCACCTTGTTCCTTG...TGTCCTGCAGATTATCTCAGCTCTTGATCCTCCCTTGTCAACCTTAAATGAATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173867.8 |
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| 3UTR CCA 72 bp | TATGCCCTGGGTTTCAATCTCAAGAGCTGTACAAACTaGGCGTCACAGTGTACATCTGTTAATTCTAGCACT | + |
|
Preference number: 3 (lower is better) Translates to: YALGFNLKSCTN*ASQCTSVNSST Trigger: AGTGCTAGAATTAACAGATGTACACTGTGACGCCCAGTTTGTACAGCTCTTGAGATTGAAACCCAGGGCATA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173867.8 |
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| 3UTR-3UTR CAA 90 bp | CATTCATTTAAGGTTGACAAGGGAGGATCAAGAGCTGAGATAATCTGCAGGACAAATGTTCAAGGACAGTaGAGATGTCTCACAAAACAA | + |
|
Preference number: 3 (lower is better) Translates to: HSFKVDKGGSRAEIICRTNVQGQ*RCLTKQ Trigger: TTGTTTTGTGAGACATCTCAACTGTCCTTGAACATT...TGTCCTGCAGATTATCTCAGCTCTTGATCCTCCCTTGTCAACCTTAAATGAATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173867.8 |
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| CDS-3UTR CCA 90 bp | AGTTGCACAGGTCGAGACATGTCAGTAAGGATTTCAAGACCGTGGTGCCATCTCGAAGCGGATCTGGGCTaGCTTGTCGCGGTCCTGGTA | + |
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Preference number: 4 (lower is better) Translates to: SCTGRDMSVRISRPWCHLEADLG*LVAVLV Trigger: TACCAGGACCGCGACAAGCCAGCCCAGATCCGCTTC...GAGATGGCACCACGGTCTTGAAATCCTTACTGACATGTCTCGACCTGTGCAACT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174659.2 |
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| CDS-3UTR CCA 90 bp | CAGTTGCACAGGTCGAGACATGTCAGTAAGGATTTCAAGACCGTGGTGCCATCTTTGCTGAAGCGGATCTaGGCTGGCTTGTCGCGGTCC | + |
|
Preference number: 4 (lower is better) Translates to: QLHRSRHVSKDFKTVVPSLLKRI*AGLSRS Trigger: GGACCGCGACAAGCCAGCCCAGATCCGCTTCAGCAA...AGATGGCACCACGGTCTTGAAATCCTTACTGACATGTCTCGACCTGTGCAACTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174659.2 |
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| CDS-3UTR TCA 90 bp | CAGTTGCACAGGTCGAGACATGTCAGTAAGGATTTCAAGACCGTGGTGCCATCTCCGCGGAAATATTGCTaGAGCGGATCTGGGCTGGCT | + |
|
Preference number: 4 (lower is better) Translates to: QLHRSRHVSKDFKTVVPSPRKYC*SGSGLA Trigger: AGCCAGCCCAGATCCGCTTCAGCAATATTTCCGCGG...AGATGGCACCACGGTCTTGAAATCCTTACTGACATGTCTCGACCTGTGCAACTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174659.2 |
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| 3UTR CAA 72 bp | ACTAAAACCACCAACCAGGATAGGGGGACGGTTCATTaGGTAGTATGCCCTGGGTTTCAATCTCAAGAGCTG | + |
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Preference number: 4 (lower is better) Translates to: TKTTNQDRGTVH*VVCPGFQSQEL Trigger: CAGCTCTTGAGATTGAAACCCAGGGCATACTACCAAATGAACCGTCCCCCTATCCTGGTTGGTGGTTTTAGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000173867.8 |
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| CDS-3UTR TCA 90 bp | TCCAGCCACAGTACTTCTGTCCATAATGATGCAGTCAACCATCCTTTTATCCAGGGTCAAAGCACTGACTaGCACCAACAGAGGCTGAAC | + |
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Preference number: 4 (lower is better) Translates to: SSHSTSVHNDAVNHPFIQGQSTD*HQQRLN Trigger: GTTCAGCCTCTGTTGGTGTCAGTCAGTGCTTTGACC...CTGGATAAAAGGATGGTTGACTGCATCATTATGGACAGAAGTACTGTGGCTGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173867.8 |
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| CDS-3UTR TCA 90 bp | TCCAGCCACAGTACTTCTGTCCATAATGATGCAGTCAACCATCCTTTTATCCAGCCAGCATGTCAGCAGTaGACTGGTCAATGTGAGCAA | + |
|
Preference number: 4 (lower is better) Translates to: SSHSTSVHNDAVNHPFIQPACQQ*TGQCEQ Trigger: TTGCTCACATTGACCAGTTCACTGCTGACATGCTGG...CTGGATAAAAGGATGGTTGACTGCATCATTATGGACAGAAGTACTGTGGCTGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173867.8 |
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| CDS-3UTR TCA 90 bp | CAGCATTCATTTAAGGTTGACAAGGGAGGATCAAGAGCTGAGATAATCTGCAGGCTAAGGTCAAAGCACTaGCTGACACCAACAGAGGCT | + |
|
Preference number: 4 (lower is better) Translates to: QHSFKVDKGGSRAEIICRLRSKH*LTPTEA Trigger: AGCCTCTGTTGGTGTCAGTCAGTGCTTTGACCTTAG...CCTGCAGATTATCTCAGCTCTTGATCCTCCCTTGTCAACCTTAAATGAATGCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173867.8 |
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| CDS-3UTR CCA 90 bp | TCATTTGGTAGTATGCCCTGGGTTTCAATCTCAAGAGCTGTACAAACTGGGCGTCAGCATTCTGGCTGCTaGATGCAATACCTGCATTTG | + |
|
Preference number: 4 (lower is better) Translates to: SFGSMPWVSISRAVQTGRQHSGC*MQYLHL Trigger: CAAATGCAGGTATTGCATCCAGCAGCCAGAATGCTG...ACGCCCAGTTTGTACAGCTCTTGAGATTGAAACCCAGGGCATACTACCAAATGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173867.8 |
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| CDS-3UTR TCA 90 bp | CAGCATTCATTTAAGGTTGACAAGGGAGGATCAAGAGCTGAGATAATCTGCAGGGTGAACTGGTCAATGTaGGCAACTGGTTTGGTTCCA | + |
|
Preference number: 4 (lower is better) Translates to: QHSFKVDKGGSRAEIICRVNWSM*ATGLVP Trigger: TGGAACCAAACCAGTTGCTCACATTGACCAGTTCAC...CCTGCAGATTATCTCAGCTCTTGATCCTCCCTTGTCAACCTTAAATGAATGCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173867.8 |
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| CDS-3UTR TCA 90 bp | CATTCATTTAAGGTTGACAAGGGAGGATCAAGAGCTGAGATAATCTGCAGGACAAGTACTCTGTCAGTCTaGGGGCCAGCTCTATTTCTG | + |
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Preference number: 4 (lower is better) Translates to: HSFKVDKGGSRAEIICRTSTLSV*GPALFL Trigger: CAGAAATAGAGCTGGCCCTCAGACTGACAGAGTACT...TGTCCTGCAGATTATCTCAGCTCTTGATCCTCCCTTGTCAACCTTAAATGAATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173867.8 |
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| CDS-3UTR CCA 90 bp | TCAAATGTTCAAGGACAGTTGAGATGTCTCACAAAACAAAAACCTACAAACCAAGAAGCGGATCTGGGCTaGCTTGTCGCGGTCCTGGTA | + |
|
Preference number: 4 (lower is better) Translates to: SNVQGQLRCLTKQKPTNQEADLG*LVAVLV Trigger: TACCAGGACCGCGACAAGCCAGCCCAGATCCGCTTC...TTGGTTTGTAGGTTTTTGTTTTGTGAGACATCTCAACTGTCCTTGAACATTTGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000173867.8 |
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| CDS-3UTR CCA 90 bp | TCAAATGTTCAAGGACAGTTGAGATGTCTCACAAAACAAAAACCTACAAACCAATTGCTGAAGCGGATCTaGGCTGGCTTGTCGCGGTCC | + |
|
Preference number: 4 (lower is better) Translates to: SNVQGQLRCLTKQKPTNQLLKRI*AGLSRS Trigger: GGACCGCGACAAGCCAGCCCAGATCCGCTTCAGCAA...TTGGTTTGTAGGTTTTTGTTTTGTGAGACATCTCAACTGTCCTTGAACATTTGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000173867.8 |
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| CDS-3UTR CCA 90 bp | CAGCATTCATTTAAGGTTGACAAGGGAGGATCAAGAGCTGAGATAATCTGCAGGACTGGTAGCTGTGGCTaGGTCAATCACTTTCATCAC | + |
|
Preference number: 4 (lower is better) Translates to: QHSFKVDKGGSRAEIICRTGSCG*VNHFHH Trigger: GTGATGAAAGTGATTGACCCAGCCACAGCTACCAGT...CCTGCAGATTATCTCAGCTCTTGATCCTCCCTTGTCAACCTTAAATGAATGCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173867.8 |
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| CDS-3UTR TCA 90 bp | TCAAATGTTCAAGGACAGTTGAGATGTCTCACAAAACAAAAACCTACAAACCAACCGCGGAAATATTGCTaGAGCGGATCTGGGCTGGCT | + |
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Preference number: 4 (lower is better) Translates to: SNVQGQLRCLTKQKPTNQPRKYC*SGSGLA Trigger: AGCCAGCCCAGATCCGCTTCAGCAATATTTCCGCGG...TTGGTTTGTAGGTTTTTGTTTTGTGAGACATCTCAACTGTCCTTGAACATTTGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000173867.8 |
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| CDS-3UTR TCA 90 bp | CAGCATTCATTTAAGGTTGACAAGGGAGGATCAAGAGCTGAGATAATCTGCAGGCCTGCTTCTATGTCTTaGGCTTTAGACAATTCCACC | + |
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Preference number: 4 (lower is better) Translates to: QHSFKVDKGGSRAEIICRPASMS*ALDNST Trigger: GGTGGAATTGTCTAAAGCTCAAGACATAGAAGCAGG...CCTGCAGATTATCTCAGCTCTTGATCCTCCCTTGTCAACCTTAAATGAATGCTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173867.8 |
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| CDS-3UTR TCA 90 bp | TCCAGCCACAGTACTTCTGTCCATAATGATGCAGTCAACCATCCTTTTATCCAGCTTTCATCACCGCATTaGCACTCATTGGAGAGAGTA | + |
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Preference number: 4 (lower is better) Translates to: SSHSTSVHNDAVNHPFIQLSSPH*HSLERV Trigger: TACTCTCTCCAATGAGTGTCAATGCGGTGATGAAAG...CTGGATAAAAGGATGGTTGACTGCATCATTATGGACAGAAGTACTGTGGCTGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173867.8 |
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| CDS-3UTR GCA 90 bp | CATTCATTTAAGGTTGACAAGGGAGGATCAAGAGCTGAGATAATCTGCAGGACACGTGGTGCCATCTCCTaGTTCTATGTCTTGAGCTTT | + |
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Preference number: 4 (lower is better) Translates to: HSFKVDKGGSRAEIICRTRGAIS*FYVLSF Trigger: AAAGCTCAAGACATAGAAGCAGGAGATGGCACCACG...TGTCCTGCAGATTATCTCAGCTCTTGATCCTCCCTTGTCAACCTTAAATGAATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173867.8 |
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| CDS-3UTR CCA 90 bp | TTTAAGGTTGACAAGGGAGGATCAAGAGCTGAGATAATCTGCAGGACACAATCAATTCCACCAGCATTCTaGCTGCTGGATGCAATACCT | + |
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Preference number: 4 (lower is better) Translates to: FKVDKGGSRAEIICRTQSIPPAF*LLDAIP Trigger: AGGTATTGCATCCAGCAGCCAGAATGCTGGTGGAAT...TGATTGTGTCCTGCAGATTATCTCAGCTCTTGATCCTCCCTTGTCAACCTTAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173867.8 |
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| CDS-3UTR TCA 90 bp | CATTCATTTAAGGTTGACAAGGGAGGATCAAGAGCTGAGATAATCTGCAGGACACAAAGCTTTCTGGAATaGCTCGGAAATGATGGTTGG | + |
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Preference number: 4 (lower is better) Translates to: HSFKVDKGGSRAEIICRTQSFLE*LGNDGW Trigger: CCAACCATCATTTCCGAGTCATTCCAGAAAGCTTTG...TGTCCTGCAGATTATCTCAGCTCTTGATCCTCCCTTGTCAACCTTAAATGAATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173867.8 |
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| CDS-3UTR CCA 90 bp | TCCAGCCACAGTACTTCTGTCCATAATGATGCAGTCAACCATCCTTTTATCCAGCTCGGAAATGATGGTTaGATGTATACCTTTCTGCAG | + |
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Preference number: 4 (lower is better) Translates to: SSHSTSVHNDAVNHPFIQLGNDG*MYTFLQ Trigger: CTGCAGAAAGGTATACATCCAACCATCATTTCCGAG...CTGGATAAAAGGATGGTTGACTGCATCATTATGGACAGAAGTACTGTGGCTGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173867.8 |
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| CDS-3UTR TCA 90 bp | CAGCATTCATTTAAGGTTGACAAGGGAGGATCAAGAGCTGAGATAATCTGCAGGTCGCCTTTTCCATCTTaGATCATTTTGTCCATTCCT | + |
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Preference number: 4 (lower is better) Translates to: QHSFKVDKGGSRAEIICRSPFPS*IILSIP Trigger: AGGAATGGACAAAATGATTCAAGATGGAAAAGGCGA...CCTGCAGATTATCTCAGCTCTTGATCCTCCCTTGTCAACCTTAAATGAATGCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000173867.8 |
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| CDS-3UTR GCA 90 bp | TTTAAGGTTGACAAGGGAGGATCAAGAGCTGAGATAATCTGCAGGACACAATCAGGATGTATACCTTTCTaGAGAAGTTTGGTACAGGAG | + |
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Preference number: 4 (lower is better) Translates to: FKVDKGGSRAEIICRTQSGCIPF*RSLVQE Trigger: CTCCTGTACCAAACTTCTGCAGAAAGGTATACATCC...TGATTGTGTCCTGCAGATTATCTCAGCTCTTGATCCTCCCTTGTCAACCTTAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173867.8 |
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| CDS-3UTR GCA 90 bp | CACAGATCAAATGTTCAAGGACAGTTGAGATGTCTCACAAAACAAAAACCTACATCTCTGTCGCTCAGTTaGACAGGTCGAGACATGTCA | + |
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Preference number: 4 (lower is better) Translates to: HRSNVQGQLRCLTKQKPTSLSLS*TGRDMS Trigger: TGACATGTCTCGACCTGTGCAACTGAGCGACAGAGA...TGTAGGTTTTTGTTTTGTGAGACATCTCAACTGTCCTTGAACATTTGATCTGTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000173867.8 |
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| CDS-3UTR TCA 90 bp | TCAAATGTTCAAGGACAGTTGAGATGTCTCACAAAACAAAAACCTACAAACCAAACACAGAGAGCATCATaGATGGAGCGCTCAGCTTCT | + |
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Preference number: 4 (lower is better) Translates to: SNVQGQLRCLTKQKPTNQTQRAS*MERSAS Trigger: AGAAGCTGAGCGCTCCATTCATGATGCTCTCTGTGT...TTGGTTTGTAGGTTTTTGTTTTGTGAGACATCTCAACTGTCCTTGAACATTTGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000173867.8 |
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| CDS-3UTR CCA 90 bp | CACAGATCAAATGTTCAAGGACAGTTGAGATGTCTCACAAAACAAAAACCTACAAGAGAGCATCATGAATaGAGCGCTCAGCTTCTTCAA | + |
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Preference number: 4 (lower is better) Translates to: HRSNVQGQLRCLTKQKPTREHHE*SAQLLQ Trigger: TTGAAGAAGCTGAGCGCTCCATTCATGATGCTCTCT...TGTAGGTTTTTGTTTTGTGAGACATCTCAACTGTCCTTGAACATTTGATCTGTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000173867.8 |
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| CDS-3UTR CCA 90 bp | TCAAATGTTCAAGGACAGTTGAGATGTCTCACAAAACAAAAACCTACAAACCAATTTCCTCCAAAATGTTaGAGATCCCACCCTTTCGGA | + |
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Preference number: 4 (lower is better) Translates to: SNVQGQLRCLTKQKPTNQFPPKC*RSHPFG Trigger: TCCGAAAGGGTGGGATCTCCAACATTTTGGAGGAAA...TTGGTTTGTAGGTTTTTGTTTTGTGAGACATCTCAACTGTCCTTGAACATTTGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000173867.8 |
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| 3UTR CAA 72 bp | ACTTGGAAGGTACACAGATCAAATGTTCAAGGACAGTaGAGATGTCTCACAAAACAAAAACCTACAAACCAA | + |
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Preference number: 4 (lower is better) Translates to: TWKVHRSNVQGQ*RCLTKQKPTNQ Trigger: TTGGTTTGTAGGTTTTTGTTTTGTGAGACATCTCAACTGTCCTTGAACATTTGATCTGTGTACCTTCCAAGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000173867.8 |
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| CDS-3UTR TCA 90 bp | CACAGATCAAATGTTCAAGGACAGTTGAGATGTCTCACAAAACAAAAACCTACAAGTAGACTTGAATACTaGGAGACAACCTTTGAATTC | + |
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Preference number: 4 (lower is better) Translates to: HRSNVQGQLRCLTKQKPTSRLEY*ETTFEF Trigger: GAATTCAAAGGTTGTCTCTCAGTATTCAAGTCTACT...TGTAGGTTTTTGTTTTGTGAGACATCTCAACTGTCCTTGAACATTTGATCTGTG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000173867.8 |
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| CDS-3UTR CCA 90 bp | TCAAATGTTCAAGGACAGTTGAGATGTCTCACAAAACAAAAACCTACAAACCAATTTTCCAAAGCTTTCTaGAATGACTCGGAAATGATG | + |
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Preference number: 4 (lower is better) Translates to: SNVQGQLRCLTKQKPTNQFSKAF*NDSEMM Trigger: CATCATTTCCGAGTCATTCCAGAAAGCTTTGGAAAA...TTGGTTTGTAGGTTTTTGTTTTGTGAGACATCTCAACTGTCCTTGAACATTTGA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000173867.8 |
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| CDS GCA 90 bp | TCTGGGCTGGCTTGTCGCGGTCCTGGTAGGCGCTTTTCCCGCGGCTaGCGGGCCCGGCGGTGGGCGCCCCGCTTCGGGAAGCTACGTTCT | + |
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Preference number: 5 (lower is better) Translates to: SGLACRGPGRRFSRG*RARRWAPRFGKLRS Trigger: AGAACGTAGCTTCCCGAAGCGGGGCGCCCACCGCCGGGCCCGGCAGCCGCGGGAAAAGCGCCTACCAGGACCGCGACAAGCCAGCCCAGA 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000020562.5 ENSMUST00000173853.8 ENSMUST00000173867.8 ENSMUST00000174047.8 ENSMUST00000174659.2 |
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| CDS CCA 90 bp | AGCAACCGCTTTGGCCGCGGAAATATTGCTGAAGCGGATCTGGGCTaGCTTGTCGCGGTCCTGGTAGGCGCTTTTCCCGCGGCTGCCGGG | + |
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Preference number: 5 (lower is better) Translates to: SNRFGRGNIAEADLG*LVAVLVGAFPAAAG Trigger: CCCGGCAGCCGCGGGAAAAGCGCCTACCAGGACCGCGACAAGCCAGCCCAGATCCGCTTCAGCAATATTTCCGCGGCCAAAGCGGTTGCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000020562.5 ENSMUST00000173867.8 ENSMUST00000174047.8 |
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| CDS CCA 90 bp | TCCACCAGCTTTGGCCGCGGAAATATTGCTGAAGCGGATCTGGGCTaGCTTGTCGCGGTCCTGGTAGGCGCTTTTCCCGCGGCTGCCGGG | + |
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Preference number: 5 (lower is better) Translates to: STSFGRGNIAEADLG*LVAVLVGAFPAAAG Trigger: CCCGGCAGCCGCGGGAAAAGCGCCTACCAGGACCGCGACAAGCCAGCCCAGATCCGCTTCAGCAATATTTCCGCGGCCAAAGCTGGTGGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174659.2 |
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| CDS CCA 90 bp | GGTGATACCTTTGGCCGCGGAAATATTGCTGAAGCGGATCTGGGCTaGCTTGTCGCGGTCCTGGTAGGCGCTTTTCCCGCGGCTGCCGGG | + |
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Preference number: 5 (lower is better) Translates to: GDTFGRGNIAEADLG*LVAVLVGAFPAAAG Trigger: CCCGGCAGCCGCGGGAAAAGCGCCTACCAGGACCGCGACAAGCCAGCCCAGATCCGCTTCAGCAATATTTCCGCGGCCAAAGGTATCACC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173853.8 |
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| CDS-3UTR CAA 90 bp | CGAGACATGTCAGTAAGGATTTCAAGACCGTGGTGCCATCTCCTGCTTCTATGTTTGGCCGCGGAAATATaGCTGAAGCGGATCTGGGCT | + |
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Preference number: 5 (lower is better) Translates to: RDMSVRISRPWCHLLLLCLAAEI*LKRIWA Trigger: AGCCCAGATCCGCTTCAGCAATATTTCCGCGGCCAA...ACATAGAAGCAGGAGATGGCACCACGGTCTTGAAATCCTTACTGACATGTCTCG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174659.2 |
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| CDS-3UTR CAA 90 bp | CAGCATTCATTTAAGGTTGACAAGGGAGGATCAAGAGCTGAGATAATCTGCAGGTTGGCCGCGGAAATATaGCTGAAGCGGATCTGGGCT | + |
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Preference number: 5 (lower is better) Translates to: QHSFKVDKGGSRAEIICRLAAEI*LKRIWA Trigger: AGCCCAGATCCGCTTCAGCAATATTTCCGCGGCCAA...CCTGCAGATTATCTCAGCTCTTGATCCTCCCTTGTCAACCTTAAATGAATGCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173867.8 |
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| CDS-3UTR CAA 90 bp | CAGCATTCATTTAAGGTTGACAAGGGAGGATCAAGAGCTGAGATAATCTGCAGGTTCTCTGTCGCTCAGTaGCACAGGTCGAGACATGTC | + |
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Preference number: 5 (lower is better) Translates to: QHSFKVDKGGSRAEIICRFSVAQ*HRSRHV Trigger: GACATGTCTCGACCTGTGCAACTGAGCGACAGAGAA...CCTGCAGATTATCTCAGCTCTTGATCCTCCCTTGTCAACCTTAAATGAATGCTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173867.8 |
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| CDS-3UTR CAA 90 bp | TCATTTGGTAGTATGCCCTGGGTTTCAATCTCAAGAGCTGTACAAACTGGGCGTTCTTCAATCACCAGTTaGTTAGAACCACGTACGACA | + |
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Preference number: 5 (lower is better) Translates to: SFGSMPWVSISRAVQTGRSSITS*LEPRTT Trigger: TGTCGTACGTGGTTCTAACAAACTGGTGATTGAAGA...ACGCCCAGTTTGTACAGCTCTTGAGATTGAAACCCAGGGCATACTACCAAATGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173867.8 |
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| CDS-3UTR CAA 90 bp | TTTAAGGTTGACAAGGGAGGATCAAGAGCTGAGATAATCTGCAGGACACAATCAATTTCCTCCAAAATGTaGGAGATCCCACCCTTTCGG | + |
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Preference number: 5 (lower is better) Translates to: FKVDKGGSRAEIICRTQSISSKM*EIPPFR Trigger: CCGAAAGGGTGGGATCTCCAACATTTTGGAGGAAAT...TGATTGTGTCCTGCAGATTATCTCAGCTCTTGATCCTCCCTTGTCAACCTTAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173867.8 |
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| CDS TCA 90 bp | AGAGCTCTTTTCTTTACTAAGCATCGGATGACACAGAGAGCATCATaGATGGAGCGCTCAGCTTCTTCAATCACCAGTTTGTTAGAACCA | + |
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Preference number: 5 (lower is better) Translates to: RALFFTKHRMTQRAS*MERSASSITSLLEP Trigger: TGGTTCTAACAAACTGGTGATTGAAGAAGCTGAGCGCTCCATTCATGATGCTCTCTGTGTCATCCGATGCTTAGTAAAGAAAAGAGCTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020562.5 ENSMUST00000173867.8 |
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| CDS-3UTR CAA 90 bp | CAGCATTCATTTAAGGTTGACAAGGGAGGATCAAGAGCTGAGATAATCTGCAGGCCTTTCTGCAGAAGTTaGGTACAGGAGTCTAAAAGA | + |
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Preference number: 5 (lower is better) Translates to: QHSFKVDKGGSRAEIICRPFCRS*VQESKR Trigger: TCTTTTAGACTCCTGTACCAAACTTCTGCAGAAAGG...CCTGCAGATTATCTCAGCTCTTGATCCTCCCTTGTCAACCTTAAATGAATGCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173867.8 |
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| CDS-3UTR CAA 90 bp | TTTAAGGTTGACAAGGGAGGATCAAGAGCTGAGATAATCTGCAGGACACAATCAACTTTCATCACCGCATaGACACTCATTGGAGAGAGT | + |
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Preference number: 5 (lower is better) Translates to: FKVDKGGSRAEIICRTQSTFITA*TLIGES Trigger: ACTCTCTCCAATGAGTGTCAATGCGGTGATGAAAGT...TGATTGTGTCCTGCAGATTATCTCAGCTCTTGATCCTCCCTTGTCAACCTTAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173867.8 |
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| CDS-3UTR CAA 90 bp | TCCAGCCACAGTACTTCTGTCCATAATGATGCAGTCAACCATCCTTTTATCCAGATCGCCTTTTCCATCTaGAATCATTTTGTCCATTCC | + |
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Preference number: 5 (lower is better) Translates to: SSHSTSVHNDAVNHPFIQIAFSI*NHFVHS Trigger: GGAATGGACAAAATGATTCAAGATGGAAAAGGCGAT...CTGGATAAAAGGATGGTTGACTGCATCATTATGGACAGAAGTACTGTGGCTGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000173867.8 |
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| CDS-3UTR CAA 90 bp | TCAAATGTTCAAGGACAGTTGAGATGTCTCACAAAACAAAAACCTACAAACCAATCCTGCTTCTATGTCTaGAGCTTTAGACAATTCCAC | + |
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Preference number: 5 (lower is better) Translates to: SNVQGQLRCLTKQKPTNQSCFYV*SFRQFH Trigger: GTGGAATTGTCTAAAGCTCAAGACATAGAAGCAGGA...TTGGTTTGTAGGTTTTTGTTTTGTGAGACATCTCAACTGTCCTTGAACATTTGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000173867.8 |
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| CDS-3UTR CAA 90 bp | TCAAATGTTCAAGGACAGTTGAGATGTCTCACAAAACAAAAACCTACAAACCAAGTACAACCTGTAATCTaGAATAGTTTTCCAGAACCA | + |
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Preference number: 5 (lower is better) Translates to: SNVQGQLRCLTKQKPTNQVQPVI*NSFPEP Trigger: TGGTTCTGGAAAACTATTCAAGATTACAGGTTGTAC...TTGGTTTGTAGGTTTTTGTTTTGTGAGACATCTCAACTGTCCTTGAACATTTGA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000173867.8 |
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| CDS CCA 72 bp | GGTAGGCGCTTTTCCCGCGGCTGCCGGGCCCGGCGGTaGGCGCCCCGCTTCGGGAAGCTACGTTCTCCGGCA | + |
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Preference number: 6 (lower is better) Translates to: GRRFSRGCRARR*APRFGKLRSPA Trigger: TGCCGGAGAACGTAGCTTCCCGAAGCGGGGCGCCCACCGCCGGGCCCGGCAGCCGCGGGAAAAGCGCCTACC 75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000020562.5 ENSMUST00000173853.8 ENSMUST00000173867.8 ENSMUST00000174047.8 ENSMUST00000174659.2 |
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| CDS CAA 90 bp | GCTGGGCCGTTCCGCCGGAGGCGGGCCGGCGACCGGGTGATACCTTaGGCCGCGGAAATATTGCTGAAGCGGATCTGGGCTGGCTTGTCG | + |
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Preference number: 6 (lower is better) Translates to: AGPFRRRRAGDRVIP*AAEILLKRIWAGLS Trigger: CGACAAGCCAGCCCAGATCCGCTTCAGCAATATTTCCGCGGCCAAAGGTATCACCCGGTCGCCGGCCCGCCTCCGGCGGAACGGCCCAGC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173853.8 |
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| CDS CAA 72 bp | GCCGGCGACCGGGTGATACCTTTGGCCGCGGAAATATaGCTGAAGCGGATCTGGGCTGGCTTGTCGCGGTCC | + |
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Preference number: 6 (lower is better) Translates to: AGDRVIPLAAEI*LKRIWAGLSRS Trigger: GGACCGCGACAAGCCAGCCCAGATCCGCTTCAGCAATATTTCCGCGGCCAAAGGTATCACCCGGTCGCCGGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173853.8 |
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| CDS CCA 72 bp | TTTGGCCGCGGAAATATTGCTGAAGCGGATCTGGGCTaGCTTGTCGCGGTCCTGGTAGGCGCTTTTCCCGCG | + |
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Preference number: 6 (lower is better) Translates to: FGRGNIAEADLG*LVAVLVGAFPA Trigger: CGCGGGAAAAGCGCCTACCAGGACCGCGACAAGCCAGCCCAGATCCGCTTCAGCAATATTTCCGCGGCCAAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000020562.5 ENSMUST00000173853.8 ENSMUST00000173867.8 ENSMUST00000174047.8 ENSMUST00000174659.2 |
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| CDS TCA 72 bp | AGACAATTCCACCAGCTTTGGCCGCGGAAATATTGCTaGAGCGGATCTGGGCTGGCTTGTCGCGGTCCTGGT | + |
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Preference number: 6 (lower is better) Translates to: RQFHQLWPRKYC*SGSGLACRGPG Trigger: ACCAGGACCGCGACAAGCCAGCCCAGATCCGCTTCAGCAATATTTCCGCGGCCAAAGCTGGTGGAATTGTCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174659.2 |
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| CDS GCA 72 bp | GCCAGCAATGATGACAACCGACGTGGTGCCATCTCCTaGTTCTATGTCTTGAGCTTTAGACAATTCCACCAG | + |
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Preference number: 6 (lower is better) Translates to: ASNDDNRRGAIS*FYVLSFRQFHQ Trigger: CTGGTGGAATTGTCTAAAGCTCAAGACATAGAAGCAGGAGATGGCACCACGTCGGTTGTCATCATTGCTGGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020562.5 ENSMUST00000173867.8 |
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| CDS TCA 72 bp | TTCTTTACTAAGCATCGGATGACACAGAGAGCATCATaGATGGAGCGCTCAGCTTCTTCAATCACCAGTTTG | + |
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Preference number: 6 (lower is better) Translates to: FFTKHRMTQRAS*MERSASSITSL Trigger: CAAACTGGTGATTGAAGAAGCTGAGCGCTCCATTCATGATGCTCTCTGTGTCATCCGATGCTTAGTAAAGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020562.5 ENSMUST00000173867.8 |
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