Pregenerated sensors for CCSAP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031971Ensembl transcript IDs: ENSMUST00000034452.12, ENSMUST00000122421.2
Found 100 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ACCCTGCCAGCTGTGGAATGTGGAGCTGATGAAAAAGAGCAGCTCTaGCTGGACTACAGGAGGGGTGGGTGGGAAGCGCCTAGAGCCGGT | + |
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Preference number: 1 (lower is better) Translates to: TLPAVECGADEKEQL*LDYRRGGWEAPRAG Trigger: ACCGGCTCTAGGCGCTTCCCACCCACCCCTCCTGTAGTCCAGTCAGAGCTGCTCTTTTTCATCAGCTCCACATTCCACAGCTGGCAGGGT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
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| 3UTR CCA 90 bp | AAAAGAGCTCCCCATCTCTCCAGAAGAACACGGTGCTCATCCTTCTaGGAGTCTCTTCTGCACGGCGGCCAAGGCACCCATCTCACGGAA | + |
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Preference number: 1 (lower is better) Translates to: KRAPHLSRRTRCSSF*ESLLHGGQGTHLTE Trigger: TTCCGTGAGATGGGTGCCTTGGCCGCCGTGCAGAAGAGACTCCCAGAAGGATGAGCACCGTGTTCTTCTGGAGAGATGGGGAGCTCTTTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
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| 3UTR CCA 90 bp | TGCCAGCTGTGGAATGTGGAGCTGATGAAAAAGAGCAGCTCTGACTaGACTACAGGAGGGGTGGGTGGGAAGCGCCTAGAGCCGGTTAAA | + |
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Preference number: 1 (lower is better) Translates to: CQLWNVELMKKSSSD*TTGGVGGKRLEPVK Trigger: TTTAACCGGCTCTAGGCGCTTCCCACCCACCCCTCCTGTAGTCCAGTCAGAGCTGCTCTTTTTCATCAGCTCCACATTCCACAGCTGGCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
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| 3UTR CCA 90 bp | AACATTACCATCAGGCCAGCACCTGCCCGAAATTCTCCCACAGTATaGCAGCAAAGATCATCGGGCCAGCGATCAAGCAGCCAGGTTTTC | + |
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Preference number: 1 (lower is better) Translates to: NITIRPAPARNSPTV*QQRSSGQRSSSQVF Trigger: GAAAACCTGGCTGCTTGATCGCTGGCCCGATGATCTTTGCTGCCATACTGTGGGAGAATTTCGGGCAGGTGCTGGCCTGATGGTAATGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
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| 3UTR GCA 90 bp | GCTTGCAGGAACAGTTGGTTTCTTCCACCCGTGTGTGGTCTCAGTTaGCAGTCTTTGTTTTCCTTTTCTTGTGTGAACACTCGAAAGAGG | + |
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Preference number: 1 (lower is better) Translates to: ACRNSWFLPPVCGLS*QSLFSFSCVNTRKR Trigger: CCTCTTTCGAGTGTTCACACAAGAAAAGGAAAACAAAGACTGGCAACTGAGACCACACACGGGTGGAAGAAACCAACTGTTCCTGCAAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
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| 3UTR TCA 90 bp | CTGCAGTTAAAGGAAAGTGACTCAAAAGAAACGTCATCGTTGCTCTaGACATGCTCTCTGCGTGTCGCTCACTGGAATGTTCCAGAACTA | + |
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Preference number: 1 (lower is better) Translates to: LQLKESDSKETSSLL*TCSLRVAHWNVPEL Trigger: TAGTTCTGGAACATTCCAGTGAGCGACACGCAGAGAGCATGTTCAGAGCAACGATGACGTTTCTTTTGAGTCACTTTCCTTTAACTGCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
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| 3UTR CCA 90 bp | AACTTCTCAATATCTTCATCCGCTATCTCTCTTAGAAGAGAGGAATaGCGGTCAGACTTAAGCAGCCAACTGCAGTTAAAGGAAAGTGAC | + |
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Preference number: 1 (lower is better) Translates to: NFSISSSAISLRREE*RSDLSSQLQLKESD Trigger: GTCACTTTCCTTTAACTGCAGTTGGCTGCTTAAGTCTGACCGCCATTCCTCTCTTCTAAGAGAGATAGCGGATGAAGATATTGAGAAGTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
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| 3UTR-3UTR TCA 90 bp | CACACCCAACACTGGGTCTTACCCAGCAGGCTCAGAAGCTGCGTGGGTGCAGGCTGTAAAAGGAGGGCATaGTGCAGGCAAGGACACCCT | + |
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Preference number: 2 (lower is better) Translates to: HTQHWVLPSRLRSCVGAGCKRRA*CRQGHP Trigger: AGGGTGTCCTTGCCTGCATCATGCCCTCCTTTTACA...GCCTGCACCCACGCAGCTTCTGAGCCTGCTGGGTAAGACCCAGTGTTGGGTGTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
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| 3UTR CAA 90 bp | AGCTCTGGCTTTTCAGAACAGCCCGGATCTCCATACCTGCCTTCCTaGGCTCCGTGCATGGCGAACTGCACGGTGAGTCCTGAACAGTGG | + |
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Preference number: 2 (lower is better) Translates to: SSGFSEQPGSPYLPS*APCMANCTVSPEQW Trigger: CCACTGTTCAGGACTCACCGTGCAGTTCGCCATGCACGGAGCCAAGGAAGGCAGGTATGGAGATCCGGGCTGTTCTGAAAAGCCAGAGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
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| 3UTR-3UTR CCA 90 bp | CTCCCCATCTCTCCAGAAGAACACGGTGCTCATCCTTCTGGGAGTCTCTTCTGCGTGAGTCCTGAACAGTaGACAGGACACCCTGCCAGC | + |
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Preference number: 2 (lower is better) Translates to: LPISPEEHGAHPSGSLFCVSPEQ*TGHPAS Trigger: GCTGGCAGGGTGTCCTGTCCACTGTTCAGGACTCAC...GCAGAAGAGACTCCCAGAAGGATGAGCACCGTGTTCTTCTGGAGAGATGGGGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
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| 3UTR-3UTR TCA 90 bp | CTCCCCATCTCTCCAGAAGAACACGGTGCTCATCCTTCTGGGAGTCTCTTCTGCACGTCATCGTTGCTCTaGACATGCTCTCTGCGTGTC | + |
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Preference number: 2 (lower is better) Translates to: LPISPEEHGAHPSGSLFCTSSLL*TCSLRV Trigger: GACACGCAGAGAGCATGTTCAGAGCAACGATGACGT...GCAGAAGAGACTCCCAGAAGGATGAGCACCGTGTTCTTCTGGAGAGATGGGGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
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| 3UTR-3UTR CCA 90 bp | AGAGAGGAATGGCGGTCAGACTTAAGCAGCCAACTGCAGTTAAAGGAAAGTGACTACAGGAGGGGTGGGTaGGAAGCGCCTAGAGCCGGT | + |
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Preference number: 2 (lower is better) Translates to: REEWRSDLSSQLQLKESDYRRGG*EAPRAG Trigger: ACCGGCTCTAGGCGCTTCCCACCCACCCCTCCTGTA...GTCACTTTCCTTTAACTGCAGTTGGCTGCTTAAGTCTGACCGCCATTCCTCTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
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| 3UTR-3UTR CCA 90 bp | ACATTACCATCAGGCCAGCACCTGCCCGAAATTCTCCCACAGTATGGCAGCAAACAGCCGCCAAAGCTCTaGCTTTTCAGAACAGCCCGG | + |
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Preference number: 2 (lower is better) Translates to: TLPSGQHLPEILPQYGSKQPPKL*LFRTAR Trigger: CCGGGCTGTTCTGAAAAGCCAGAGCTTTGGCGGCTG...TTTGCTGCCATACTGTGGGAGAATTTCGGGCAGGTGCTGGCCTGATGGTAATGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
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| 3UTR-3UTR GCA 90 bp | AAACCTATCAAGTGTAATCGGTCCGCAGCCGCCAAAGCTCTGGCTTTTCAGAACGTGGACAGGACACCCTaGCAGCTGTGGAATGTGGAG | + |
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Preference number: 2 (lower is better) Translates to: KPIKCNRSAAAKALAFQNVDRTP*QLWNVE Trigger: CTCCACATTCCACAGCTGGCAGGGTGTCCTGTCCAC...GTTCTGAAAAGCCAGAGCTTTGGCGGCTGCGGACCGATTACACTTGATAGGTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
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| 3UTR-3UTR CCA 90 bp | CGGTGTCTGCTGGTCCCATCCCCACAGGCCAAACAAACCCAGTTCATTAAATGTAAGAGCAGCTCTGACTaGACTACAGGAGGGGTGGGT | + |
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Preference number: 2 (lower is better) Translates to: RCLLVPSPQAKQTQFIKCKSSSD*TTGGVG Trigger: ACCCACCCCTCCTGTAGTCCAGTCAGAGCTGCTCTT...ACATTTAATGAACTGGGTTTGTTTGGCCTGTGGGGATGGGACCAGCAGACACCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
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| 3UTR-3UTR CCA 90 bp | CTCCCCATCTCTCCAGAAGAACACGGTGCTCATCCTTCTGGGAGTCTCTTCTGCAATTCTCCCACAGTATaGCAGCAAAGATCATCGGGC | + |
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Preference number: 2 (lower is better) Translates to: LPISPEEHGAHPSGSLFCNSPTV*QQRSSG Trigger: GCCCGATGATCTTTGCTGCCATACTGTGGGAGAATT...GCAGAAGAGACTCCCAGAAGGATGAGCACCGTGTTCTTCTGGAGAGATGGGGAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
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| 3UTR CAA 90 bp | ACCATCTCTTGGAATTTCCTAAGGGGGAGGGGCTTGCAGGAACAGTaGGTTTCTTCCACCCGTGTGTGGTCTCAGTTGCCAGTCTTTGTT | + |
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Preference number: 2 (lower is better) Translates to: TISWNFLRGRGLQEQ*VSSTRVWSQLPVFV Trigger: AACAAAGACTGGCAACTGAGACCACACACGGGTGGAAGAAACCAACTGTTCCTGCAAGCCCCTCCCCCTTAGGAAATTCCAAGAGATGGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
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| 3UTR-3UTR TCA 90 bp | ATATCTTCATCCGCTATCTCTCTTAGAAGAGAGGAATGGCGGTCAGACTTAAGCCTGCACGGTGAGTCCTaGACAGTGGACAGGACACCC | + |
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Preference number: 2 (lower is better) Translates to: ISSSAISLRREEWRSDLSLHGES*TVDRTP Trigger: GGGTGTCCTGTCCACTGTTCAGGACTCACCGTGCAG...GCTTAAGTCTGACCGCCATTCCTCTCTTCTAAGAGAGATAGCGGATGAAGATAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
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| 3UTR-3UTR TCA 90 bp | CAGAGGGAGGGCTCTGTACATGAATGGGGACTGTACAAAACTAGGCAAATATTTCTGCACGGTGAGTCCTaGACAGTGGACAGGACACCC | + |
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Preference number: 2 (lower is better) Translates to: QREGSVHEWGLYKTRQIFLHGES*TVDRTP Trigger: GGGTGTCCTGTCCACTGTTCAGGACTCACCGTGCAG...AAATATTTGCCTAGTTTTGTACAGTCCCCATTCATGTACAGAGCCCTCCCTCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
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| 3UTR-3UTR CCA 90 bp | CTCCCCATCTCTCCAGAAGAACACGGTGCTCATCCTTCTGGGAGTCTCTTCTGCAGCAAAACCATCTCTTaGAATTTCCTAAGGGGGAGG | + |
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Preference number: 2 (lower is better) Translates to: LPISPEEHGAHPSGSLFCSKTIS*NFLRGR Trigger: CCTCCCCCTTAGGAAATTCCAAGAGATGGTTTTGCT...GCAGAAGAGACTCCCAGAAGGATGAGCACCGTGTTCTTCTGGAGAGATGGGGAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
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| 3UTR-3UTR GCA 90 bp | ATATCTTCATCCGCTATCTCTCTTAGAAGAGAGGAATGGCGGTCAGACTTAAGCCCGGATCTCCATACCTaGCTTCCTTGGCTCCGTGCA | + |
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Preference number: 2 (lower is better) Translates to: ISSSAISLRREEWRSDLSPDLHT*LPWLRA Trigger: TGCACGGAGCCAAGGAAGGCAGGTATGGAGATCCGG...GCTTAAGTCTGACCGCCATTCCTCTCTTCTAAGAGAGATAGCGGATGAAGATAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
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| 3UTR-3UTR GCA 90 bp | CGGTGTCTGCTGGTCCCATCCCCACAGGCCAAACAAACCCAGTTCATTAAATGTAAGAAACGTCATCGTTaGTCTGAACATGCTCTCTGC | + |
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Preference number: 2 (lower is better) Translates to: RCLLVPSPQAKQTQFIKCKKRHR*SEHALC Trigger: GCAGAGAGCATGTTCAGAGCAACGATGACGTTTCTT...ACATTTAATGAACTGGGTTTGTTTGGCCTGTGGGGATGGGACCAGCAGACACCG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
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| 3UTR-3UTR TCA 90 bp | ATATCTTCATCCGCTATCTCTCTTAGAAGAGAGGAATGGCGGTCAGACTTAAGCGAAAAAGAGCAGCTCTaGCTGGACTACAGGAGGGGT | + |
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Preference number: 2 (lower is better) Translates to: ISSSAISLRREEWRSDLSEKEQL*LDYRRG Trigger: ACCCCTCCTGTAGTCCAGTCAGAGCTGCTCTTTTTC...GCTTAAGTCTGACCGCCATTCCTCTCTTCTAAGAGAGATAGCGGATGAAGATAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
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| 3UTR-3UTR GCA 90 bp | ACATTACCATCAGGCCAGCACCTGCCCGAAATTCTCCCACAGTATGGCAGCAAAGTGTGTGGTCTCAGTTaGCAGTCTTTGTTTTCCTTT | + |
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Preference number: 2 (lower is better) Translates to: TLPSGQHLPEILPQYGSKVCGLS*QSLFSF Trigger: AAAGGAAAACAAAGACTGGCAACTGAGACCACACAC...TTTGCTGCCATACTGTGGGAGAATTTCGGGCAGGTGCTGGCCTGATGGTAATGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
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| 3UTR-3UTR CCA 90 bp | GAGCCGGTTAAAGGCACTCGGTGTGGGTATCTCCAAAGAGCAAAATCTTTACAAGCTTGCAGGAACAGTTaGTTTCTTCCACCCGTGTGT | + |
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Preference number: 2 (lower is better) Translates to: EPVKGTRCGYLQRAKSLQACRNS*FLPPVC Trigger: ACACACGGGTGGAAGAAACCAACTGTTCCTGCAAGC...TTGTAAAGATTTTGCTCTTTGGAGATACCCACACCGAGTGCCTTTAACCGGCTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
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| 3UTR-3UTR CCA 90 bp | AGAGAGGAATGGCGGTCAGACTTAAGCAGCCAACTGCAGTTAAAGGAAAGTGACCATCTATGGCTTCCATaGTCTGTCCCACTACTAAGG | + |
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Preference number: 2 (lower is better) Translates to: REEWRSDLSSQLQLKESDHLWLP*SVPLLR Trigger: CCTTAGTAGTGGGACAGACCATGGAAGCCATAGATG...GTCACTTTCCTTTAACTGCAGTTGGCTGCTTAAGTCTGACCGCCATTCCTCTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
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| 3UTR-3UTR CCA 90 bp | CAGAGGGAGGGCTCTGTACATGAATGGGGACTGTACAAAACTAGGCAAATATTTCTTAGAAGAGAGGAATaGCGGTCAGACTTAAGCAGC | + |
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Preference number: 2 (lower is better) Translates to: QREGSVHEWGLYKTRQIFLRREE*RSDLSS Trigger: GCTGCTTAAGTCTGACCGCCATTCCTCTCTTCTAAG...AAATATTTGCCTAGTTTTGTACAGTCCCCATTCATGTACAGAGCCCTCCCTCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
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| 3UTR-3UTR GCA 90 bp | CAGAGGGAGGGCTCTGTACATGAATGGGGACTGTACAAAACTAGGCAAATATTTAAGAAACGTCATCGTTaGTCTGAACATGCTCTCTGC | + |
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Preference number: 2 (lower is better) Translates to: QREGSVHEWGLYKTRQIFKKRHR*SEHALC Trigger: GCAGAGAGCATGTTCAGAGCAACGATGACGTTTCTT...AAATATTTGCCTAGTTTTGTACAGTCCCCATTCATGTACAGAGCCCTCCCTCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
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| 3UTR-3UTR CCA 90 bp | TTCATTAAATGTCACTGCAGATTACAACTTCTCAATATCTTCATCCGCTATCTCCATACCTGCCTTCCTTaGCTCCGTGCATGGCGAACT | + |
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Preference number: 2 (lower is better) Translates to: FIKCHCRLQLLNIFIRYLHTCLP*LRAWRT Trigger: AGTTCGCCATGCACGGAGCCAAGGAAGGCAGGTATG...GAGATAGCGGATGAAGATATTGAGAAGTTGTAATCTGCAGTGACATTTAATGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
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| 3UTR-3UTR TCA 90 bp | TTCATTAAATGTCACTGCAGATTACAACTTCTCAATATCTTCATCCGCTATCTCGAAAAAGAGCAGCTCTaGCTGGACTACAGGAGGGGT | + |
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Preference number: 2 (lower is better) Translates to: FIKCHCRLQLLNIFIRYLEKEQL*LDYRRG Trigger: ACCCCTCCTGTAGTCCAGTCAGAGCTGCTCTTTTTC...GAGATAGCGGATGAAGATATTGAGAAGTTGTAATCTGCAGTGACATTTAATGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
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| 3UTR-3UTR CCA 90 bp | TTCATTAAATGTCACTGCAGATTACAACTTCTCAATATCTTCATCCGCTATCTCGCTTGCAGGAACAGTTaGTTTCTTCCACCCGTGTGT | + |
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Preference number: 2 (lower is better) Translates to: FIKCHCRLQLLNIFIRYLACRNS*FLPPVC Trigger: ACACACGGGTGGAAGAAACCAACTGTTCCTGCAAGC...GAGATAGCGGATGAAGATATTGAGAAGTTGTAATCTGCAGTGACATTTAATGAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
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| 3UTR-3UTR CCA 90 bp | TTCATTAAATGTCACTGCAGATTACAACTTCTCAATATCTTCATCCGCTATCTCCTTAGAAGAGAGGAATaGCGGTCAGACTTAAGCAGC | + |
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Preference number: 2 (lower is better) Translates to: FIKCHCRLQLLNIFIRYLLRREE*RSDLSS Trigger: GCTGCTTAAGTCTGACCGCCATTCCTCTCTTCTAAG...GAGATAGCGGATGAAGATATTGAGAAGTTGTAATCTGCAGTGACATTTAATGAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
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| 3UTR-3UTR TCA 90 bp | TTCATTAAATGTCACTGCAGATTACAACTTCTCAATATCTTCATCCGCTATCTCCTGGCCAGAAAATCCTaGAGTCTCACTGTCTATATG | + |
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Preference number: 2 (lower is better) Translates to: FIKCHCRLQLLNIFIRYLLARKS*SLTVYM Trigger: CATATAGACAGTGAGACTTCAGGATTTTCTGGCCAG...GAGATAGCGGATGAAGATATTGAGAAGTTGTAATCTGCAGTGACATTTAATGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
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| 3UTR-3UTR CCA 90 bp | TTCATTAAATGTCACTGCAGATTACAACTTCTCAATATCTTCATCCGCTATCTCAGCAAAACCATCTCTTaGAATTTCCTAAGGGGGAGG | + |
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Preference number: 2 (lower is better) Translates to: FIKCHCRLQLLNIFIRYLSKTIS*NFLRGR Trigger: CCTCCCCCTTAGGAAATTCCAAGAGATGGTTTTGCT...GAGATAGCGGATGAAGATATTGAGAAGTTGTAATCTGCAGTGACATTTAATGAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
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| 3UTR CCA 72 bp | CCGTGCATGGCGAACTGCACGGTGAGTCCTGAACAGTaGACAGGACACCCTGCCAGCTGTGGAATGTGGAGC | + |
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Preference number: 3 (lower is better) Translates to: PCMANCTVSPEQ*TGHPASCGMWS Trigger: GCTCCACATTCCACAGCTGGCAGGGTGTCCTGTCCACTGTTCAGGACTCACCGTGCAGTTCGCCATGCACGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
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| 3UTR GCA 72 bp | ACCCAACACTGGGTCTTACCCAGCAGGCTCAGAAGCTaGGTGGGTGCAGGCAAAAGAGCTCCCCATCTCTCC | + |
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Preference number: 3 (lower is better) Translates to: TQHWVLPSRLRS*VGAGKRAPHLS Trigger: GGAGAGATGGGGAGCTCTTTTGCCTGCACCCACGCAGCTTCTGAGCCTGCTGGGTAAGACCCAGTGTTGGGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
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| 3UTR CCA 72 bp | CCCCATCTCTCCAGAAGAACACGGTGCTCATCCTTCTaGGAGTCTCTTCTGCACGGCGGCCAAGGCACCCAT | + |
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Preference number: 3 (lower is better) Translates to: PHLSRRTRCSSF*ESLLHGGQGTH Trigger: ATGGGTGCCTTGGCCGCCGTGCAGAAGAGACTCCCAGAAGGATGAGCACCGTGTTCTTCTGGAGAGATGGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
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| 3UTR GCA 72 bp | GAAGAACACGGTGCTCATCCTTCTGGGAGTCTCTTCTaGACGGCGGCCAAGGCACCCATCTCACGGAAACAC | + |
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Preference number: 3 (lower is better) Translates to: EEHGAHPSGSLF*TAAKAPISRKH Trigger: GTGTTTCCGTGAGATGGGTGCCTTGGCCGCCGTGCAGAAGAGACTCCCAGAAGGATGAGCACCGTGTTCTTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
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| 3UTR GCA 72 bp | GGCAAAAGAGCTCCCCATCTCTCCAGAAGAACACGGTaGTCATCCTTCTGGGAGTCTCTTCTGCACGGCGGC | + |
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Preference number: 3 (lower is better) Translates to: GKRAPHLSRRTR*SSFWESLLHGG Trigger: GCCGCCGTGCAGAAGAGACTCCCAGAAGGATGAGCACCGTGTTCTTCTGGAGAGATGGGGAGCTCTTTTGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
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| 3UTR-3UTR CAA 90 bp | GTGGAGCTGATGAAAAAGAGCAGCTCTGACTGGACTACAGGAGGGGTGGGTGGGGGCTTGCAGGAACAGTaGGTTTCTTCCACCCGTGTG | + |
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Preference number: 3 (lower is better) Translates to: VELMKKSSSDWTTGGVGGGLQEQ*VSSTRV Trigger: CACACGGGTGGAAGAAACCAACTGTTCCTGCAAGCC...CCCACCCACCCCTCCTGTAGTCCAGTCAGAGCTGCTCTTTTTCATCAGCTCCAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
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| 3UTR TCA 72 bp | GCTGTGGAATGTGGAGCTGATGAAAAAGAGCAGCTCTaGCTGGACTACAGGAGGGGTGGGTGGGAAGCGCCT | + |
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Preference number: 3 (lower is better) Translates to: AVECGADEKEQL*LDYRRGGWEAP Trigger: AGGCGCTTCCCACCCACCCCTCCTGTAGTCCAGTCAGAGCTGCTCTTTTTCATCAGCTCCACATTCCACAGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
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| 3UTR CCA 72 bp | ATCAGGCCAGCACCTGCCCGAAATTCTCCCACAGTATaGCAGCAAAGATCATCGGGCCAGCGATCAAGCAGC | + |
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Preference number: 3 (lower is better) Translates to: IRPAPARNSPTV*QQRSSGQRSSS Trigger: GCTGCTTGATCGCTGGCCCGATGATCTTTGCTGCCATACTGTGGGAGAATTTCGGGCAGGTGCTGGCCTGAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
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| 3UTR-3UTR CAA 90 bp | TGCCAGCTGTGGAATGTGGAGCTGATGAAAAAGAGCAGCTCTGACTGGACTACACTAAGGGGGAGGGGCTaGCAGGAACAGTTGGTTTCT | + |
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Preference number: 3 (lower is better) Translates to: CQLWNVELMKKSSSDWTTLRGRG*QEQLVS Trigger: AGAAACCAACTGTTCCTGCAAGCCCCTCCCCCTTAG...TGTAGTCCAGTCAGAGCTGCTCTTTTTCATCAGCTCCACATTCCACAGCTGGCA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
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| 3UTR TCA 72 bp | CACAAAGCCGTCATTAAGTTCTGTAAAAGGAGGGCATaGTGCAGGCAAGGACACCCTAACGGTGTCTGCTGG | + |
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Preference number: 3 (lower is better) Translates to: HKAVIKFCKRRA*CRQGHPNGVCW Trigger: CCAGCAGACACCGTTAGGGTGTCCTTGCCTGCATCATGCCCTCCTTTTACAGAACTTAATGACGGCTTTGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
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| 3UTR-3UTR CAA 90 bp | CTCCCCATCTCTCCAGAAGAACACGGTGCTCATCCTTCTGGGAGTCTCTTCTGCCTCAGTTGCCAGTCTTaGTTTTCCTTTTCTTGTGTG | + |
|
Preference number: 3 (lower is better) Translates to: LPISPEEHGAHPSGSLFCLSCQS*FSFSCV Trigger: CACACAAGAAAAGGAAAACAAAGACTGGCAACTGAG...GCAGAAGAGACTCCCAGAAGGATGAGCACCGTGTTCTTCTGGAGAGATGGGGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
||
| 3UTR-3UTR CAA 90 bp | GTCTTCATAAACAAGCCAGCATCTATGGCTTCCATGGTCTGTCCCACTACTAAGCTAAGGGGGAGGGGCTaGCAGGAACAGTTGGTTTCT | + |
|
Preference number: 3 (lower is better) Translates to: VFINKPASMASMVCPTTKLRGRG*QEQLVS Trigger: AGAAACCAACTGTTCCTGCAAGCCCCTCCCCCTTAG...CTTAGTAGTGGGACAGACCATGGAAGCCATAGATGCTGGCTTGTTTATGAAGAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
||
| 3UTR TCA 72 bp | GTCTGTCCCACTACTAAGGCAGGTGACCAACCATCATaGGAGCAAAACCATCTCTTGGAATTTCCTAAGGGG | + |
|
Preference number: 3 (lower is better) Translates to: VCPTTKAGDQPS*EQNHLLEFPKG Trigger: CCCCTTAGGAAATTCCAAGAGATGGTTTTGCTCTCATGATGGTTGGTCACCTGCCTTAGTAGTGGGACAGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
||
| 3UTR-3UTR CAA 90 bp | CTCAGAAGCTGCGTGGGTGCAGGCAAAAGAGCTCCCCATCTCTCCAGAAGAACATTTGTTTTCCTTTTCTaGTGTGAACACTCGAAAGAG | + |
|
Preference number: 3 (lower is better) Translates to: LRSCVGAGKRAPHLSRRTFVFLF*CEHSKE Trigger: CTCTTTCGAGTGTTCACACAAGAAAAGGAAAACAAA...TGTTCTTCTGGAGAGATGGGGAGCTCTTTTGCCTGCACCCACGCAGCTTCTGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
||
| 3UTR-3UTR CAA 90 bp | GGACAGGACACCCTGCCAGCTGTGGAATGTGGAGCTGATGAAAAAGAGCAGCTCCAAGAATATCAAGACTaGGGGACTTGTCTTCATAAA | + |
|
Preference number: 3 (lower is better) Translates to: GQDTLPAVECGADEKEQLQEYQD*GTCLHK Trigger: TTTATGAAGACAAGTCCCCAAGTCTTGATATTCTTG...GAGCTGCTCTTTTTCATCAGCTCCACATTCCACAGCTGGCAGGGTGTCCTGTCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
||
| 3UTR-3UTR CAA 90 bp | GTCTTCATAAACAAGCCAGCATCTATGGCTTCCATGGTCTGTCCCACTACTAAGCGTGTGTGGTCTCAGTaGCCAGTCTTTGTTTTCCTT | + |
|
Preference number: 3 (lower is better) Translates to: VFINKPASMASMVCPTTKRVWSQ*PVFVFL Trigger: AAGGAAAACAAAGACTGGCAACTGAGACCACACACG...CTTAGTAGTGGGACAGACCATGGAAGCCATAGATGCTGGCTTGTTTATGAAGAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
||
| 3UTR GCA 72 bp | AAGCAGCCAGGTTTTCAACCTAGACCATCAGCACTGTaGACAAAGCCGTCATTAAGTTCTGTAAAAGGAGGG | + |
|
Preference number: 3 (lower is better) Translates to: KQPGFQPRPSAL*TKPSLSSVKGG Trigger: CCCTCCTTTTACAGAACTTAATGACGGCTTTGTGCACAGTGCTGATGGTCTAGGTTGAAAACCTGGCTGCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
||
| 3UTR GCA 72 bp | AACAGTTGGTTTCTTCCACCCGTGTGTGGTCTCAGTTaGCAGTCTTTGTTTTCCTTTTCTTGTGTGAACACT | + |
|
Preference number: 3 (lower is better) Translates to: NSWFLPPVCGLS*QSLFSFSCVNT Trigger: AGTGTTCACACAAGAAAAGGAAAACAAAGACTGGCAACTGAGACCACACACGGGTGGAAGAAACCAACTGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
||
| 3UTR CCA 72 bp | ATATCTTCATCCGCTATCTCTCTTAGAAGAGAGGAATaGCGGTCAGACTTAAGCAGCCAACTGCAGTTAAAG | + |
|
Preference number: 3 (lower is better) Translates to: ISSSAISLRREE*RSDLSSQLQLK Trigger: CTTTAACTGCAGTTGGCTGCTTAAGTCTGACCGCCATTCCTCTCTTCTAAGAGAGATAGCGGATGAAGATAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
||
| 3UTR TCA 72 bp | GTCAGACTTAAGCAGCCAACTGCAGTTAAAGGAAAGTaGCTCAAAAGAAACGTCATCGTTGCTCTGAACATG | + |
|
Preference number: 3 (lower is better) Translates to: VRLKQPTAVKGK*LKRNVIVALNM Trigger: CATGTTCAGAGCAACGATGACGTTTCTTTTGAGTCACTTTCCTTTAACTGCAGTTGGCTGCTTAAGTCTGAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
||
| 3UTR-3UTR CAA 90 bp | GTCTTCATAAACAAGCCAGCATCTATGGCTTCCATGGTCTGTCCCACTACTAAGTTTGTTTTCCTTTTCTaGTGTGAACACTCGAAAGAG | + |
|
Preference number: 3 (lower is better) Translates to: VFINKPASMASMVCPTTKFVFLF*CEHSKE Trigger: CTCTTTCGAGTGTTCACACAAGAAAAGGAAAACAAA...CTTAGTAGTGGGACAGACCATGGAAGCCATAGATGCTGGCTTGTTTATGAAGAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
||
| 3UTR GCA 72 bp | CATCGTGTGACAGTCTCACGTGGAATGAAGTCAGTCTaGATTCTAGAAATTATCATACTCAAGAACCCAAAG | + |
|
Preference number: 3 (lower is better) Translates to: HRVTVSRGMKSV*ILEIIILKNPK Trigger: CTTTGGGTTCTTGAGTATGATAATTTCTAGAATGCAGACTGACTTCATTCCACGTGAGACTGTCACACGATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
||
| 3UTR-3UTR CAA 90 bp | TTACAAGAATATCAAGACTTGGGGACTTGTCTTCATAAACAAGCCAGCATCTATCTCAGTTGCCAGTCTTaGTTTTCCTTTTCTTGTGTG | + |
|
Preference number: 3 (lower is better) Translates to: LQEYQDLGTCLHKQASIYLSCQS*FSFSCV Trigger: CACACAAGAAAAGGAAAACAAAGACTGGCAACTGAG...ATAGATGCTGGCTTGTTTATGAAGACAAGTCCCCAAGTCTTGATATTCTTGTAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
||
| 3UTR TCA 72 bp | CTCTGGCCAGAAAATCCTGAAGTCTCACTGTCTATATaGAGACGAGATGAAACAAAACCTATCAAGTGTAAT | + |
|
Preference number: 3 (lower is better) Translates to: LWPENPEVSLSI*RRDETKPIKCN Trigger: ATTACACTTGATAGGTTTTGTTTCATCTCGTCTTCATATAGACAGTGAGACTTCAGGATTTTCTGGCCAGAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
||
| CDS-3UTR TCA 90 bp | AACACGGTGCTCATCCTTCTGGGAGTCTCTTCTGCACGGCGGCCAAGGCACCCAGGGGGCCGGACTGGGTaGAGCCGAGCTGTCCGAGGG | + |
|
Preference number: 4 (lower is better) Translates to: NTVLILLGVSSARRPRHPGGRTG*SRAVRG Trigger: CCCTCGGACAGCTCGGCTTCACCCAGTCCGGCCCCC...TGGGTGCCTTGGCCGCCGTGCAGAAGAGACTCCCAGAAGGATGAGCACCGTGTT 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
||
| CDS-3UTR GCA 90 bp | GGAGGGGTGGGTGGGAAGCGCCTAGAGCCGGTTAAAGGCACTCGGTGTGGGTATCAGAGCCAGGGCGCGTaGGCTTGCTCCAGCAGCCGG | + |
|
Preference number: 4 (lower is better) Translates to: GGVGGKRLEPVKGTRCGYQSQGA*ACSSSR Trigger: CCGGCTGCTGGAGCAAGCGCACGCGCCCTGGCTCTG...ATACCCACACCGAGTGCCTTTAACCGGCTCTAGGCGCTTCCCACCCACCCCTCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
||
| CDS-3UTR TCA 90 bp | CTCCCCATCTCTCCAGAAGAACACGGTGCTCATCCTTCTGGGAGTCTCTTCTGCGGGGGCCGGACTGGGTaGAGCCGAGCTGTCCGAGGG | + |
|
Preference number: 4 (lower is better) Translates to: LPISPEEHGAHPSGSLFCGGRTG*SRAVRG Trigger: CCCTCGGACAGCTCGGCTTCACCCAGTCCGGCCCCC...GCAGAAGAGACTCCCAGAAGGATGAGCACCGTGTTCTTCTGGAGAGATGGGGAG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
||
| CDS-3UTR GCA 90 bp | GGACAGGACACCCTGCCAGCTGTGGAATGTGGAGCTGATGAAAAAGAGCAGCTCCAGAGCCAGGGCGCGTaGGCTTGCTCCAGCAGCCGG | + |
|
Preference number: 4 (lower is better) Translates to: GQDTLPAVECGADEKEQLQSQGA*ACSSSR Trigger: CCGGCTGCTGGAGCAAGCGCACGCGCCCTGGCTCTG...GAGCTGCTCTTTTTCATCAGCTCCACATTCCACAGCTGGCAGGGTGTCCTGTCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
||
| CDS-3UTR CCA 90 bp | CACACCCAACACTGGGTCTTACCCAGCAGGCTCAGAAGCTGCGTGGGTGCAGGCATACTCTGTCAGCCATaGGTTCTCGGCAGACGCCGG | + |
|
Preference number: 4 (lower is better) Translates to: HTQHWVLPSRLRSCVGAGILCQP*VLGRRR Trigger: CCGGCGTCTGCCGAGAACCCATGGCTGACAGAGTAT...GCCTGCACCCACGCAGCTTCTGAGCCTGCTGGGTAAGACCCAGTGTTGGGTGTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
||
| CDS-3UTR TCA 90 bp | CGGTGTCTGCTGGTCCCATCCCCACAGGCCAAACAAACCCAGTTCATTAAATGTTCCACGTCCACCGAGTaGGCCCGCTGCCTCTGGGCA | + |
|
Preference number: 4 (lower is better) Translates to: RCLLVPSPQAKQTQFIKCSTSTE*ARCLWA Trigger: TGCCCAGAGGCAGCGGGCTCACTCGGTGGACGTGGA...ACATTTAATGAACTGGGTTTGTTTGGCCTGTGGGGATGGGACCAGCAGACACCG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
||
| CDS-3UTR TCA 90 bp | CACACCCAACACTGGGTCTTACCCAGCAGGCTCAGAAGCTGCGTGGGTGCAGGCCTTGGCTCGAAGTGCTaGTTCATGAATCTCGTGCAC | + |
|
Preference number: 4 (lower is better) Translates to: HTQHWVLPSRLRSCVGAGLGSKC*FMNLVH Trigger: GTGCACGAGATTCATGAATCAGCACTTCGAGCCAAG...GCCTGCACCCACGCAGCTTCTGAGCCTGCTGGGTAAGACCCAGTGTTGGGTGTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
||
| 3UTR CAA 72 bp | TTTTCAGAACAGCCCGGATCTCCATACCTGCCTTCCTaGGCTCCGTGCATGGCGAACTGCACGGTGAGTCCT | + |
|
Preference number: 4 (lower is better) Translates to: FSEQPGSPYLPS*APCMANCTVSP Trigger: AGGACTCACCGTGCAGTTCGCCATGCACGGAGCCAAGGAAGGCAGGTATGGAGATCCGGGCTGTTCTGAAAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
||
| CDS-3UTR CCA 90 bp | AACACGGTGCTCATCCTTCTGGGAGTCTCTTCTGCACGGCGGCCAAGGCACCCAATCTCTGTGGGCTTCTaGTGGCTTTCTTACTTCCTC | + |
|
Preference number: 4 (lower is better) Translates to: NTVLILLGVSSARRPRHPISVGF*WLSYFL Trigger: GAGGAAGTAAGAAAGCCACCAGAAGCCCACAGAGAT...TGGGTGCCTTGGCCGCCGTGCAGAAGAGACTCCCAGAAGGATGAGCACCGTGTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
||
| CDS-3UTR CCA 90 bp | GTGGAGCTGATGAAAAAGAGCAGCTCTGACTGGACTACAGGAGGGGTGGGTGGGTCTGTGGGCTTCTGGTaGCTTTCTTACTTCCTCTGG | + |
|
Preference number: 4 (lower is better) Translates to: VELMKKSSSDWTTGGVGGSVGFW*LSYFLW Trigger: CCAGAGGAAGTAAGAAAGCCACCAGAAGCCCACAGA...CCCACCCACCCCTCCTGTAGTCCAGTCAGAGCTGCTCTTTTTCATCAGCTCCAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
||
| 3UTR CAA 72 bp | TGGAATTTCCTAAGGGGGAGGGGCTTGCAGGAACAGTaGGTTTCTTCCACCCGTGTGTGGTCTCAGTTGCCA | + |
|
Preference number: 4 (lower is better) Translates to: WNFLRGRGLQEQ*VSSTRVWSQLP Trigger: TGGCAACTGAGACCACACACGGGTGGAAGAAACCAACTGTTCCTGCAAGCCCCTCCCCCTTAGGAAATTCCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
||
| CDS-3UTR GCA 90 bp | GTCTTCATAAACAAGCCAGCATCTATGGCTTCCATGGTCTGTCCCACTACTAAGAAGGCACTAGGCTGTTaGCGCGGTCCAGGGCCACTG | + |
|
Preference number: 4 (lower is better) Translates to: VFINKPASMASMVCPTTKKALGC*RGPGPL Trigger: CAGTGGCCCTGGACCGCGGCAACAGCCTAGTGCCTT...CTTAGTAGTGGGACAGACCATGGAAGCCATAGATGCTGGCTTGTTTATGAAGAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
||
| CDS-3UTR CCA 90 bp | GAGCCGGTTAAAGGCACTCGGTGTGGGTATCTCCAAAGAGCAAAATCTTTACAAGCGGTCCAGGGCCACTaGGTGCCCCATCAGTCTCTT | + |
|
Preference number: 4 (lower is better) Translates to: EPVKGTRCGYLQRAKSLQAVQGH*VPHQSL Trigger: AAGAGACTGATGGGGCACCCAGTGGCCCTGGACCGC...TTGTAAAGATTTTGCTCTTTGGAGATACCCACACCGAGTGCCTTTAACCGGCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
||
| CDS-3UTR GCA 90 bp | TGCCAGCTGTGGAATGTGGAGCTGATGAAAAAGAGCAGCTCTGACTGGACTACATCCAGGGCCACTGGGTaGCCCATCAGTCTCTTTTGT | + |
|
Preference number: 4 (lower is better) Translates to: CQLWNVELMKKSSSDWTTSRATG*PISLFC Trigger: ACAAAAGAGACTGATGGGGCACCCAGTGGCCCTGGA...TGTAGTCCAGTCAGAGCTGCTCTTTTTCATCAGCTCCACATTCCACAGCTGGCA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
||
| CDS-3UTR CCA 90 bp | GAGCTCCCCATCTCTCCAGAAGAACACGGTGCTCATCCTTCTGGGAGTCTCTTCACGTTGTGTGTCTTCTaGCTTCCCATGTCCATCTGT | + |
|
Preference number: 4 (lower is better) Translates to: ELPISPEEHGAHPSGSLFTLCVF*LPMSIC Trigger: ACAGATGGACATGGGAAGCCAGAAGACACACAACGT...GAAGAGACTCCCAGAAGGATGAGCACCGTGTTCTTCTGGAGAGATGGGGAGCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
||
| CDS-3UTR GCA 90 bp | GAGGAATGGCGGTCAGACTTAAGCAGCCAACTGCAGTTAAAGGAAAGTGACTCATCCAGGGCCACTGGGTaGCCCATCAGTCTCTTTTGT | + |
|
Preference number: 4 (lower is better) Translates to: EEWRSDLSSQLQLKESDSSRATG*PISLFC Trigger: ACAAAAGAGACTGATGGGGCACCCAGTGGCCCTGGA...TGAGTCACTTTCCTTTAACTGCAGTTGGCTGCTTAAGTCTGACCGCCATTCCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
||
| CDS-3UTR CCA 90 bp | GTCTTCATAAACAAGCCAGCATCTATGGCTTCCATGGTCTGTCCCACTACTAAGATACTCTGTCAGCCATaGGTTCTCGGCAGACGCCGG | + |
|
Preference number: 4 (lower is better) Translates to: VFINKPASMASMVCPTTKILCQP*VLGRRR Trigger: CCGGCGTCTGCCGAGAACCCATGGCTGACAGAGTAT...CTTAGTAGTGGGACAGACCATGGAAGCCATAGATGCTGGCTTGTTTATGAAGAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
||
| CDS-3UTR TCA 90 bp | AAACCTATCAAGTGTAATCGGTCCGCAGCCGCCAAAGCTCTGGCTTTTCAGAACCTTGGCTCGAAGTGCTaGTTCATGAATCTCGTGCAC | + |
|
Preference number: 4 (lower is better) Translates to: KPIKCNRSAAAKALAFQNLGSKC*FMNLVH Trigger: GTGCACGAGATTCATGAATCAGCACTTCGAGCCAAG...GTTCTGAAAAGCCAGAGCTTTGGCGGCTGCGGACCGATTACACTTGATAGGTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
||
| CDS-3UTR CCA 90 bp | GAGCTCCCCATCTCTCCAGAAGAACACGGTGCTCATCCTTCTGGGAGTCTCTTCCCTGTCTTCTATTCTTaGCTCGAAGTGCTGATTCAT | + |
|
Preference number: 4 (lower is better) Translates to: ELPISPEEHGAHPSGSLFPVFYS*LEVLIH Trigger: ATGAATCAGCACTTCGAGCCAAGAATAGAAGACAGG...GAAGAGACTCCCAGAAGGATGAGCACCGTGTTCTTCTGGAGAGATGGGGAGCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
||
| CDS-3UTR CCA 90 bp | AGAGAGGAATGGCGGTCAGACTTAAGCAGCCAACTGCAGTTAAAGGAAAGTGACTCTGTGGGCTTCTGGTaGCTTTCTTACTTCCTCTGG | + |
|
Preference number: 4 (lower is better) Translates to: REEWRSDLSSQLQLKESDSVGFW*LSYFLW Trigger: CCAGAGGAAGTAAGAAAGCCACCAGAAGCCCACAGA...GTCACTTTCCTTTAACTGCAGTTGGCTGCTTAAGTCTGACCGCCATTCCTCTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
||
| CDS-3UTR CCA 90 bp | GTCTTCATAAACAAGCCAGCATCTATGGCTTCCATGGTCTGTCCCACTACTAAGATCTCTGTGGGCTTCTaGTGGCTTTCTTACTTCCTC | + |
|
Preference number: 4 (lower is better) Translates to: VFINKPASMASMVCPTTKISVGF*WLSYFL Trigger: GAGGAAGTAAGAAAGCCACCAGAAGCCCACAGAGAT...CTTAGTAGTGGGACAGACCATGGAAGCCATAGATGCTGGCTTGTTTATGAAGAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
||
| CDS-3UTR CCA 90 bp | ATATCTTCATCCGCTATCTCTCTTAGAAGAGAGGAATGGCGGTCAGACTTAAGCACGTTGTGTGTCTTCTaGCTTCCCATGTCCATCTGT | + |
|
Preference number: 4 (lower is better) Translates to: ISSSAISLRREEWRSDLSTLCVF*LPMSIC Trigger: ACAGATGGACATGGGAAGCCAGAAGACACACAACGT...GCTTAAGTCTGACCGCCATTCCTCTCTTCTAAGAGAGATAGCGGATGAAGATAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
||
| CDS TCA 90 bp | GCAGACGCCGGCTTTACCCTCTGGTTCTTTTCCACGTCCACCGAGTaGGCCCGCTGCCTCTGGGCAGCCAGCTTCCTTTTCTCCACCTGT | + |
|
Preference number: 5 (lower is better) Translates to: ADAGFTLWFFSTSTE*ARCLWAASFLFSTC Trigger: ACAGGTGGAGAAAAGGAAGCTGGCTGCCCAGAGGCAGCGGGCTCACTCGGTGGACGTGGAAAAGAACCAGAGGGTAAAGCCGGCGTCTGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
||
| CDS-3UTR CAA 90 bp | CTCCCCATCTCTCCAGAAGAACACGGTGCTCATCCTTCTGGGAGTCTCTTCTGCGCTGACGCGCAGACGTaGTGTGTCTTCTGGCTTCCC | + |
|
Preference number: 5 (lower is better) Translates to: LPISPEEHGAHPSGSLFCADAQT*CVFWLP Trigger: GGGAAGCCAGAAGACACACAACGTCTGCGCGTCAGC...GCAGAAGAGACTCCCAGAAGGATGAGCACCGTGTTCTTCTGGAGAGATGGGGAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
||
| CDS-3UTR CAA 90 bp | GGAGGGGTGGGTGGGAAGCGCCTAGAGCCGGTTAAAGGCACTCGGTGTGGGTATAGAGCAAACGGGTGCTaGTTCTCTTTTATCTTGCTC | + |
|
Preference number: 5 (lower is better) Translates to: GGVGGKRLEPVKGTRCGYRANGC*FSFILL Trigger: GAGCAAGATAAAAGAGAACAAGCACCCGTTTGCTCT...ATACCCACACCGAGTGCCTTTAACCGGCTCTAGGCGCTTCCCACCCACCCCTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
||
| CDS CCA 90 bp | GCCTCTGGGCAGCCAGCTTCCTTTTCTCCACCTGTCTTCTATTCTTaGCTCGAAGTGCTGATTCATGAATCTCGTGCACAGAGGCTGACG | + |
|
Preference number: 5 (lower is better) Translates to: ASGQPASFSPPVFYS*LEVLIHESRAQRLT Trigger: CGTCAGCCTCTGTGCACGAGATTCATGAATCAGCACTTCGAGCCAAGAATAGAAGACAGGTGGAGAAAAGGAAGCTGGCTGCCCAGAGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
||
| CDS-3UTR CAA 90 bp | GTCTTCATAAACAAGCCAGCATCTATGGCTTCCATGGTCTGTCCCACTACTAAGGCTGACGCGCAGACGTaGTGTGTCTTCTGGCTTCCC | + |
|
Preference number: 5 (lower is better) Translates to: VFINKPASMASMVCPTTKADAQT*CVFWLP Trigger: GGGAAGCCAGAAGACACACAACGTCTGCGCGTCAGC...CTTAGTAGTGGGACAGACCATGGAAGCCATAGATGCTGGCTTGTTTATGAAGAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
||
| CDS-3UTR CAA 90 bp | GAGCCGGTTAAAGGCACTCGGTGTGGGTATCTCCAAAGAGCAAAATCTTTACAACTTCCGTGTCCTTTTTaGGTGGTGCTGGTAACACTG | + |
|
Preference number: 5 (lower is better) Translates to: EPVKGTRCGYLQRAKSLQLPCPF*VVLVTL Trigger: CAGTGTTACCAGCACCACCAAAAAAGGACACGGAAG...TTGTAAAGATTTTGCTCTTTGGAGATACCCACACCGAGTGCCTTTAACCGGCTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
||
| CDS-3UTR CAA 90 bp | GTCCCACTACTAAGGCAGGTGACCAACCATCATGAGAGCAAAACCATCTCTTGGACCTGTCTTCTATTCTaGGCTCGAAGTGCTGATTCA | + |
|
Preference number: 5 (lower is better) Translates to: VPLLRQVTNHHESKTISWTCLLF*ARSADS Trigger: TGAATCAGCACTTCGAGCCAAGAATAGAAGACAGGT...CCAAGAGATGGTTTTGCTCTCATGATGGTTGGTCACCTGCCTTAGTAGTGGGAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
||
| CDS-3UTR CAA 90 bp | CAGAGGGAGGGCTCTGTACATGAATGGGGACTGTACAAAACTAGGCAAATATTTCTTCCGTGTCCTTTTTaGGTGGTGCTGGTAACACTG | + |
|
Preference number: 5 (lower is better) Translates to: QREGSVHEWGLYKTRQIFLPCPF*VVLVTL Trigger: CAGTGTTACCAGCACCACCAAAAAAGGACACGGAAG...AAATATTTGCCTAGTTTTGTACAGTCCCCATTCATGTACAGAGCCCTCCCTCTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
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| CDS-3UTR CAA 90 bp | GAGCCGGTTAAAGGCACTCGGTGTGGGTATCTCCAAAGAGCAAAATCTTTACAAACCTGTCTTCTATTCTaGGCTCGAAGTGCTGATTCA | + |
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Preference number: 5 (lower is better) Translates to: EPVKGTRCGYLQRAKSLQTCLLF*ARSADS Trigger: TGAATCAGCACTTCGAGCCAAGAATAGAAGACAGGT...TTGTAAAGATTTTGCTCTTTGGAGATACCCACACCGAGTGCCTTTAACCGGCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
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| CDS-3UTR CAA 90 bp | GCAGATTACAACTTCTCAATATCTTCATCCGCTATCTCTCTTAGAAGAGAGGAATCAGTCTCTTTTGTCTaGTGTTCTTCGGGTTTCTCT | + |
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Preference number: 5 (lower is better) Translates to: ADYNFSISSSAISLRREESVSFV*CSSGFS Trigger: AGAGAAACCCGAAGAACACAAGACAAAAGAGACTGA...TTCCTCTCTTCTAAGAGAGATAGCGGATGAAGATATTGAGAAGTTGTAATCTGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
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| CDS-3UTR CAA 90 bp | ACCCAGTTCATTAAATGTCACTGCAGATTACAACTTCTCAATATCTTCATCCGCTCAGTCTCTTTTGTCTaGTGTTCTTCGGGTTTCTCT | + |
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Preference number: 5 (lower is better) Translates to: TQFIKCHCRLQLLNIFIRSVSFV*CSSGFS Trigger: AGAGAAACCCGAAGAACACAAGACAAAAGAGACTGA...GCGGATGAAGATATTGAGAAGTTGTAATCTGCAGTGACATTTAATGAACTGGGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
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| CDS CAA 72 bp | CGGGCCCCAGGCGTCCCAGAGCCAGGGCGCGTGCGCTaGCTCCAGCAGCCGGCGGCCCAGGCGGTAGCGCAG | + |
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Preference number: 6 (lower is better) Translates to: RAPGVPEPGRVR*LQQPAAQAVAQ Trigger: CTGCGCTACCGCCTGGGCCGCCGGCTGCTGGAGCAAGCGCACGCGCCCTGGCTCTGGGACGCCTGGGGCCCG 79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
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| CDS TCA 72 bp | GGCTTTACCCTCTGGTTCTTTTCCACGTCCACCGAGTaGGCCCGCTGCCTCTGGGCAGCCAGCTTCCTTTTC | + |
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Preference number: 6 (lower is better) Translates to: GFTLWFFSTSTE*ARCLWAASFLF Trigger: GAAAAGGAAGCTGGCTGCCCAGAGGCAGCGGGCTCACTCGGTGGACGTGGAAAAGAACCAGAGGGTAAAGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
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| CDS GCA 72 bp | TTCTTACTTCCTCTGGCACATAAGGCACTAGGCTGTTaGCGCGGTCCAGGGCCACTGGGTGCCCCATCAGTC | + |
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Preference number: 6 (lower is better) Translates to: FLLPLAHKALGC*RGPGPLGAPSV Trigger: GACTGATGGGGCACCCAGTGGCCCTGGACCGCGGCAACAGCCTAGTGCCTTATGTGCCAGAGGAAGTAAGAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
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| CDS CCA 72 bp | TGCACAGAGGCTGACGCGCAGACGTTGTGTGTCTTCTaGCTTCCCATGTCCATCTGTCTCTCTCCCCAGCCA | + |
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Preference number: 6 (lower is better) Translates to: CTEADAQTLCVF*LPMSICLSPQP Trigger: TGGCTGGGGAGAGAGACAGATGGACATGGGAAGCCAGAAGACACACAACGTCTGCGCGTCAGCCTCTGTGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
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| CDS CAA 72 bp | TCTTGTGTTCTTCGGGTTTCTCTTCCGTGTCCTTTTTaGGTGGTGCTGGTAACACTGTGTCCTGCTCCTCCG | + |
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Preference number: 6 (lower is better) Translates to: SCVLRVSLPCPF*VVLVTLCPAPP Trigger: CGGAGGAGCAGGACACAGTGTTACCAGCACCACCAAAAAAGGACACGGAAGAGAAACCCGAAGAACACAAGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
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| CDS CCA 72 bp | TCTCTTTTATCTTGCTCGTCGATCTCTGTGGGCTTCTaGTGGCTTTCTTACTTCCTCTGGCACATAAGGCAC | + |
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Preference number: 6 (lower is better) Translates to: SLLSCSSISVGF*WLSYFLWHIRH Trigger: GTGCCTTATGTGCCAGAGGAAGTAAGAAAGCCACCAGAAGCCCACAGAGATCGACGAGCAAGATAAAAGAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
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| CDS CCA 72 bp | GTGCTTGTTCTCTTTTATCTTGCTCGTCGATCTCTGTaGGCTTCTGGTGGCTTTCTTACTTCCTCTGGCACA | + |
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Preference number: 6 (lower is better) Translates to: VLVLFYLARRSL*ASGGFLTSSGT Trigger: TGTGCCAGAGGAAGTAAGAAAGCCACCAGAAGCCCACAGAGATCGACGAGCAAGATAAAAGAGAACAAGCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
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| CDS CCA 72 bp | CAGCCAGCTTCCTTTTCTCCACCTGTCTTCTATTCTTaGCTCGAAGTGCTGATTCATGAATCTCGTGCACAG | + |
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Preference number: 6 (lower is better) Translates to: QPASFSPPVFYS*LEVLIHESRAQ Trigger: CTGTGCACGAGATTCATGAATCAGCACTTCGAGCCAAGAATAGAAGACAGGTGGAGAAAAGGAAGCTGGCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
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| CDS GCA 72 bp | CATAAAGAGCAAACGGGTGCTTGTTCTCTTTTATCTTaGTCGTCGATCTCTGTGGGCTTCTGGTGGCTTTCT | + |
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Preference number: 6 (lower is better) Translates to: HKEQTGACSLLS*SSISVGFWWLS Trigger: AGAAAGCCACCAGAAGCCCACAGAGATCGACGAGCAAGATAAAAGAGAACAAGCACCCGTTTGCTCTTTATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034452.12 ENSMUST00000122421.2 |
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