Pregenerated sensors for CCRL2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000043953Ensembl transcript IDs: ENSMUST00000111888.3, ENSMUST00000195968.2, ENSMUST00000199839.5
Found 62 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CCAGGTGTTAGCACTCAGGAAACAGAGGCAGGCACATCTCTGAGTTCAAGGCTACCTAGAGTGCTGGGATaGCAGACATGCCACCACTGC | + |
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Preference number: 2 (lower is better) Translates to: PGVSTQETEAGTSLSSRLPRVLG*QTCHHC Trigger: GCAGTGGTGGCATGTCTGTCATCCCAGCACTCTAGG...TAGCCTTGAACTCAGAGATGTGCCTGCCTCTGTTTCCTGAGTGCTAACACCTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111888.3 |
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| 3UTR-3UTR TCA 90 bp | TTGAGATGGGCATCACCAGGTGTTAGCACTCAGGAAACAGAGGCAGGCACATCTGCCACCACTGCTAGCTaGCAGTTACTGAAAGGCTGG | + |
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Preference number: 2 (lower is better) Translates to: LRWASPGVSTQETEAGTSATTAS*QLLKGW Trigger: CCAGCCTTTCAGTAACTGTCAGCTAGCAGTGGTGGC...AGATGTGCCTGCCTCTGTTTCCTGAGTGCTAACACCTGGTGATGCCCATCTCAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111888.3 |
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| 3UTR-3UTR CCA 90 bp | AGAGGCAGGCACATCTCTGAGTTCAAGGCTAGCCTCGACTACAAAGAGAGTTCTCGCCTCCTAGAGTGCTaGGATGACAGACATGCCACC | + |
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Preference number: 2 (lower is better) Translates to: RGRHISEFKASLDYKESSRLLEC*DDRHAT Trigger: GGTGGCATGTCTGTCATCCCAGCACTCTAGGAGGCG...AGAACTCTCTTTGTAGTCGAGGCTAGCCTTGAACTCAGAGATGTGCCTGCCTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111888.3 |
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| 3UTR-3UTR TCA 90 bp | TTGAGATGGGCATCACCAGGTGTTAGCACTCAGGAAACAGAGGCAGGCACATCTTTATACTTGCATTTGTaGGATGCCTCCTGCCTCCGC | + |
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Preference number: 2 (lower is better) Translates to: LRWASPGVSTQETEAGTSLYLHL*DASCLR Trigger: GCGGAGGCAGGAGGCATCTCACAAATGCAAGTATAA...AGATGTGCCTGCCTCTGTTTCCTGAGTGCTAACACCTGGTGATGCCCATCTCAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111888.3 |
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| 3UTR-3UTR TCA 90 bp | CCAGGTGTTAGCACTCAGGAAACAGAGGCAGGCACATCTCTGAGTTCAAGGCTAGGGGCCAGTGATCTCTaGGTTTACACATCAGTTTTG | + |
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Preference number: 2 (lower is better) Translates to: PGVSTQETEAGTSLSSRLGASDL*VYTSVL Trigger: CAAAACTGATGTGTAAACTCAGAGATCACTGGCCCC...TAGCCTTGAACTCAGAGATGTGCCTGCCTCTGTTTCCTGAGTGCTAACACCTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111888.3 |
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| 3UTR-3UTR CCA 90 bp | CCAGGTGTTAGCACTCAGGAAACAGAGGCAGGCACATCTCTGAGTTCAAGGCTACAGTTACTGAAAGGCTaGCACGCTTGGATAACTCAC | + |
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Preference number: 2 (lower is better) Translates to: PGVSTQETEAGTSLSSRLQLLKG*HAWITH Trigger: GTGAGTTATCCAAGCGTGCCAGCCTTTCAGTAACTG...TAGCCTTGAACTCAGAGATGTGCCTGCCTCTGTTTCCTGAGTGCTAACACCTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111888.3 |
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| 3UTR-3UTR TCA 90 bp | TTGAGATGGGCATCACCAGGTGTTAGCACTCAGGAAACAGAGGCAGGCACATCTTGGCATAAAACAATGTaGAGAGACAAGGTTGAGTGT | + |
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Preference number: 2 (lower is better) Translates to: LRWASPGVSTQETEAGTSWHKTM*RDKVEC Trigger: ACACTCAACCTTGTCTCTTCACATTGTTTTATGCCA...AGATGTGCCTGCCTCTGTTTCCTGAGTGCTAACACCTGGTGATGCCCATCTCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111888.3 |
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| 3UTR-3UTR GCA 90 bp | AACAAAATGGGCATGATCATACTAGGTAGATGCCATGCTATAGATCAAAGCTGGCTTGCATTTGTGAGATaGCTCCTGCCTCCGCCTCCT | + |
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Preference number: 2 (lower is better) Translates to: NKMGMIILGRCHAIDQSWLAFVR*LLPPPP Trigger: AGGAGGCGGAGGCAGGAGGCATCTCACAAATGCAAG...CCAGCTTTGATCTATAGCATGGCATCTACCTAGTATGATCATGCCCATTTTGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111888.3 |
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| 3UTR-3UTR GCA 90 bp | CCAGGTGTTAGCACTCAGGAAACAGAGGCAGGCACATCTCTGAGTTCAAGGCTATACACAGAGAAACCCTaGCTCCCAAAACAAAACAAA | + |
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Preference number: 2 (lower is better) Translates to: PGVSTQETEAGTSLSSRLYTEKP*LPKQNK Trigger: TTTGTTTTGTTTTGGGAGGCAGGGTTTCTCTGTGTA...TAGCCTTGAACTCAGAGATGTGCCTGCCTCTGTTTCCTGAGTGCTAACACCTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111888.3 |
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| 3UTR-3UTR TCA 90 bp | AACAAAATGGGCATGATCATACTAGGTAGATGCCATGCTATAGATCAAAGCTGGAGACTCTGGGGCCAGTaGTCTCTGAGTTTACACATC | + |
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Preference number: 2 (lower is better) Translates to: NKMGMIILGRCHAIDQSWRLWGQ*SLSLHI Trigger: GATGTGTAAACTCAGAGATCACTGGCCCCAGAGTCT...CCAGCTTTGATCTATAGCATGGCATCTACCTAGTATGATCATGCCCATTTTGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111888.3 |
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| 3UTR-3UTR GCA 90 bp | AAAATGGGCATGATCATACTAGGTAGATGCCATGCTATAGATCAAAGCTGGGCTAAGTCAGGTTATACTTaGATTTGTGAGATGCCTCCT | + |
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Preference number: 2 (lower is better) Translates to: KMGMIILGRCHAIDQSWAKSGYT*ICEMPP Trigger: AGGAGGCATCTCACAAATGCAAGTATAACCTGACTT...AGCCCAGCTTTGATCTATAGCATGGCATCTACCTAGTATGATCATGCCCATTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111888.3 |
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| 3UTR TCA 72 bp | TTGAGGTTGGGGGAAGTCAGGTTATACTTGCATTTGTaGGATGCCTCCTGCCTCCGCCTCCTAGAGTGCTGG | + |
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Preference number: 3 (lower is better) Translates to: LRLGEVRLYLHL*DASCLRLLECW Trigger: CCAGCACTCTAGGAGGCGGAGGCAGGAGGCATCTCACAAATGCAAGTATAACCTGACTTCCCCCAACCTCAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000111888.3 ENSMUST00000199839.5 |
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| 3UTR TCA 72 bp | TGGCACGCTTGGATAACTCACAGACTCTGGGGCCAGTaGTCTCTGAGTTTACACATCAGTTTTGCCACTTTA | + |
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Preference number: 3 (lower is better) Translates to: WHAWITHRLWGQ*SLSLHISFATL Trigger: TAAAGTGGCAAAACTGATGTGTAAACTCAGAGATCACTGGCCCCAGAGTCTGTGAGTTATCCAAGCGTGCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111888.3 ENSMUST00000199839.5 |
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| 3UTR-3UTR CAA 90 bp | AAAATGGGCATGATCATACTAGGTAGATGCCATGCTATAGATCAAAGCTGGGCTTATAGTTATGTAACTTaGGACAACTACCGAGCTTCA | + |
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Preference number: 3 (lower is better) Translates to: KMGMIILGRCHAIDQSWAYSYVT*DNYRAS Trigger: TGAAGCTCGGTAGTTGTCCAAAGTTACATAACTATA...AGCCCAGCTTTGATCTATAGCATGGCATCTACCTAGTATGATCATGCCCATTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111888.3 |
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| 3UTR GCA 72 bp | AGAGTGGAATTCACCTTTATAAATAACTTAACCGTGTaGCAGAGACAAATTCAACGCTTAGTAGTAAATGTT | + |
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Preference number: 3 (lower is better) Translates to: RVEFTFINNLTV*QRQIQRLVVNV Trigger: AACATTTACTACTAAGCGTTGAATTTGTCTCTGGCACACGGTTAAGTTATTTATAAAGGTGAATTCCACTCT 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111888.3 ENSMUST00000199839.5 |
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| CDS-3UTR TCA 90 bp | TTGAGATGGGCATCACCAGGTGTTAGCACTCAGGAAACAGAGGCAGGCACATCTTCAATGGGCCTGCCATaGCCTTCCCTTGGAGGCGCT | + |
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Preference number: 4 (lower is better) Translates to: LRWASPGVSTQETEAGTSSMGLP*PSLGGA Trigger: AGCGCCTCCAAGGGAAGGTCATGGCAGGCCCATTGA...AGATGTGCCTGCCTCTGTTTCCTGAGTGCTAACACCTGGTGATGCCCATCTCAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111888.3 |
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| CDS-3UTR GCA 90 bp | AGAGGCAGGCACATCTCTGAGTTCAAGGCTAGCCTCGACTACAAAGAGAGTTCTGCTTTCCCCGTGTGCTaGAGTATGGGCCCAGAACGG | + |
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Preference number: 4 (lower is better) Translates to: RGRHISEFKASLDYKESSAFPVC*SMGPER Trigger: CCGTTCTGGGCCCATACTGCAGCACACGGGGAAAGC...AGAACTCTCTTTGTAGTCGAGGCTAGCCTTGAACTCAGAGATGTGCCTGCCTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111888.3 |
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| CDS-3UTR CCA 90 bp | AGAGGCAGGCACATCTCTGAGTTCAAGGCTAGCCTCGACTACAAAGAGAGTTCTGGGTTGACGCAGCAGTaGGTGGTCGCTACCAGCTGT | + |
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Preference number: 4 (lower is better) Translates to: RGRHISEFKASLDYKESSGLTQQ*VVATSC Trigger: ACAGCTGGTAGCGACCACCCACTGCTGCGTCAACCC...AGAACTCTCTTTGTAGTCGAGGCTAGCCTTGAACTCAGAGATGTGCCTGCCTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111888.3 |
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| CDS-3UTR CCA 90 bp | TTGAGATGGGCATCACCAGGTGTTAGCACTCAGGAAACAGAGGCAGGCACATCTGAGGCCAGTCGCCCTTaGGAAAACACCCTGTATCCT | + |
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Preference number: 4 (lower is better) Translates to: LRWASPGVSTQETEAGTSEASRP*ENTLYP Trigger: AGGATACAGGGTGTTTTCCCAAGGGCGACTGGCCTC...AGATGTGCCTGCCTCTGTTTCCTGAGTGCTAACACCTGGTGATGCCCATCTCAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111888.3 |
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| CDS-3UTR GCA 90 bp | AGAGGCAGGCACATCTCTGAGTTCAAGGCTAGCCTCGACTACAAAGAGAGTTCTCTCTCCCTGAAGCTCTaGCTTCTCCTCAGTTGCCTG | + |
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Preference number: 4 (lower is better) Translates to: RGRHISEFKASLDYKESSLSLKL*LLLSCL Trigger: CAGGCAACTGAGGAGAAGGCAGAGCTTCAGGGAGAG...AGAACTCTCTTTGTAGTCGAGGCTAGCCTTGAACTCAGAGATGTGCCTGCCTCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111888.3 |
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| CDS-3UTR GCA 90 bp | CCAGGTGTTAGCACTCAGGAAACAGAGGCAGGCACATCTCTGAGTTCAAGGCTACTGCTCTTCTCATCCTaGAGGGACAAGTGTTCCTGG | + |
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Preference number: 4 (lower is better) Translates to: PGVSTQETEAGTSLSSRLLLFSS*RDKCSW Trigger: CCAGGAACACTTGTCCCTGCAGGATGAGAAGAGCAG...TAGCCTTGAACTCAGAGATGTGCCTGCCTCTGTTTCCTGAGTGCTAACACCTGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111888.3 |
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| CDS-3UTR TCA 90 bp | AAAATGGGCATGATCATACTAGGTAGATGCCATGCTATAGATCAAAGCTGGGCTAATAGAGCAGCGGGTTaGCGCAGCAGTGGGTGGTCG | + |
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Preference number: 4 (lower is better) Translates to: KMGMIILGRCHAIDQSWANRAAG*RSSGWS Trigger: CGACCACCCACTGCTGCGTCAACCCGCTGCTCTATT...AGCCCAGCTTTGATCTATAGCATGGCATCTACCTAGTATGATCATGCCCATTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111888.3 |
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| CDS-3UTR TCA 90 bp | AAAATGGGCATGATCATACTAGGTAGATGCCATGCTATAGATCAAAGCTGGGCTCACAAGACACTGTCGTaGAGATGGAGGCCAGTCGCC | + |
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Preference number: 4 (lower is better) Translates to: KMGMIILGRCHAIDQSWAHKTLS*RWRPVA Trigger: GGCGACTGGCCTCCATCTTCACGACAGTGTCTTGTG...AGCCCAGCTTTGATCTATAGCATGGCATCTACCTAGTATGATCATGCCCATTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111888.3 |
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| CDS-3UTR TCA 90 bp | TTGAGATGGGCATCACCAGGTGTTAGCACTCAGGAAACAGAGGCAGGCACATCTTGTTCCCCAGATTCTTaGGTCCTTTGTATTTCACCA | + |
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Preference number: 4 (lower is better) Translates to: LRWASPGVSTQETEAGTSCSPDS*VLCISP Trigger: TGGTGAAATACAAAGGACTCAAGAATCTGGGGAACA...AGATGTGCCTGCCTCTGTTTCCTGAGTGCTAACACCTGGTGATGCCCATCTCAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111888.3 |
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| CDS-3UTR TCA 90 bp | AAAATGGGCATGATCATACTAGGTAGATGCCATGCTATAGATCAAAGCTGGGCTTCGATTGGCAAGAAGTaGGGTTTGCCAAAGGCACAC | + |
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Preference number: 4 (lower is better) Translates to: KMGMIILGRCHAIDQSWASIGKK*GLPKAH Trigger: GTGTGCCTTTGGCAAACCTCACTTCTTGCCAATCGA...AGCCCAGCTTTGATCTATAGCATGGCATCTACCTAGTATGATCATGCCCATTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111888.3 |
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| CDS-3UTR CCA 90 bp | AACAAAATGGGCATGATCATACTAGGTAGATGCCATGCTATAGATCAAAGCTGGTGCTGTACAGTTCAATaGGCCTGCCATGACCTTCCC | + |
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Preference number: 4 (lower is better) Translates to: NKMGMIILGRCHAIDQSWCCTVQ*ACHDLP Trigger: GGGAAGGTCATGGCAGGCCCATTGAACTGTACAGCA...CCAGCTTTGATCTATAGCATGGCATCTACCTAGTATGATCATGCCCATTTTGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111888.3 |
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| CDS-3UTR GCA 90 bp | AAAATGGGCATGATCATACTAGGTAGATGCCATGCTATAGATCAAAGCTGGGCTAACACCCTGTATCCTTaGACAAGGAGGAGGATGTTG | + |
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Preference number: 4 (lower is better) Translates to: KMGMIILGRCHAIDQSWANTLYP*TRRRML Trigger: CAACATCCTCCTCCTTGTGCAAGGATACAGGGTGTT...AGCCCAGCTTTGATCTATAGCATGGCATCTACCTAGTATGATCATGCCCATTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111888.3 |
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| CDS-3UTR CCA 90 bp | AACAAAATGGGCATGATCATACTAGGTAGATGCCATGCTATAGATCAAAGCTGGAGGGACAAGTGTTCCTaGAAAGCAGACAGGAAAAGC | + |
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Preference number: 4 (lower is better) Translates to: NKMGMIILGRCHAIDQSWRDKCS*KADRKS Trigger: GCTTTTCCTGTCTGCTTTCCAGGAACACTTGTCCCT...CCAGCTTTGATCTATAGCATGGCATCTACCTAGTATGATCATGCCCATTTTGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111888.3 |
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| CDS-3UTR TCA 90 bp | AAAATGGGCATGATCATACTAGGTAGATGCCATGCTATAGATCAAAGCTGGGCTCAAGATGATCATTTTTaGCGTCAGAACGTACTTCCA | + |
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Preference number: 4 (lower is better) Translates to: KMGMIILGRCHAIDQSWAQDDHF*RQNVLP Trigger: TGGAAGTACGTTCTGACGTCAAAAATGATCATCTTG...AGCCCAGCTTTGATCTATAGCATGGCATCTACCTAGTATGATCATGCCCATTTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000111888.3 |
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| CDS-3UTR TCA 90 bp | AAAATGGGCATGATCATACTAGGTAGATGCCATGCTATAGATCAAAGCTGGGCTAAGCAAGTACCAAGATaGTCATTTTTGACGTCAGAA | + |
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Preference number: 4 (lower is better) Translates to: KMGMIILGRCHAIDQSWAKQVPR*SFLTSE Trigger: TTCTGACGTCAAAAATGATCATCTTGGTACTTGCTT...AGCCCAGCTTTGATCTATAGCATGGCATCTACCTAGTATGATCATGCCCATTTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000111888.3 |
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| 3UTR CAA 72 bp | TACACATCAGTTTTGCCACTTTATAGTTATGTAACTTaGGACAACTACCGAGCTTCAGTTTATGGAATGCAC | + |
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Preference number: 4 (lower is better) Translates to: YTSVLPLYSYVT*DNYRASVYGMH Trigger: GTGCATTCCATAAACTGAAGCTCGGTAGTTGTCCAAAGTTACATAACTATAAAGTGGCAAAACTGATGTGTA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111888.3 ENSMUST00000199839.5 |
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| CDS GCA 90 bp | GACAAGAACTTTACAGGTCCCATTGCCAGGGCTTTCCCCGTGTGCTaGAGTATGGGCCCAGAACGGCAGGGGAAGCAGGAAACACAGGTT | + |
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Preference number: 5 (lower is better) Translates to: DKNFTGPIARAFPVC*SMGPERQGKQETQV Trigger: AACCTGTGTTTCCTGCTTCCCCTGCCGTTCTGGGCCCATACTGCAGCACACGGGGAAAGCCCTGGCAATGGGACCTGTAAAGTTCTTGTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000111888.3 ENSMUST00000195968.2 ENSMUST00000199839.5 |
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| CDS CCA 90 bp | ACTTTACAGGTCCCATTGCCAGGGCTTTCCCCGTGTGCTGCAGTATaGGCCCAGAACGGCAGGGGAAGCAGGAAACACAGGTTTGAAAGT | + |
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Preference number: 5 (lower is better) Translates to: TLQVPLPGLSPCAAV*AQNGRGSRKHRFES Trigger: ACTTTCAAACCTGTGTTTCCTGCTTCCCCTGCCGTTCTGGGCCCATACTGCAGCACACGGGGAAAGCCCTGGCAATGGGACCTGTAAAGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000111888.3 ENSMUST00000195968.2 ENSMUST00000199839.5 |
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| CDS TCA 90 bp | TGGCCCATGCCAGGATGCACGCAACAATACCACAAGACACTGTCGTaGAGATGGAGGCCAGTCGCCCTTGGGAAAACACCCTGTATCCTT | + |
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Preference number: 5 (lower is better) Translates to: WPMPGCTQQYHKTLS*RWRPVALGKTPCIL Trigger: AAGGATACAGGGTGTTTTCCCAAGGGCGACTGGCCTCCATCTTCACGACAGTGTCTTGTGGTATTGTTGCGTGCATCCTGGCATGGGCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111888.3 ENSMUST00000199839.5 |
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| CDS GCA 90 bp | ACAAGAGCCGGCTTGTGGAGGTCGTACTGTCTCTCCCTGAAGCTCTaGCTTCTCCTCAGTTGCCTGCAGCAGATTATAAAAACCAGCAGA | + |
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Preference number: 5 (lower is better) Translates to: TRAGLWRSYCLSLKL*LLLSCLQQIIKTSR Trigger: TCTGCTGGTTTTTATAATCTGCTGCAGGCAACTGAGGAGAAGGCAGAGCTTCAGGGAGAGACAGTACGACCTCCACAAGCCGGCTCTTGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000111888.3 ENSMUST00000199839.5 |
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| CDS GCA 90 bp | TTATATCCTGCCTTTGATGCAAATTGCTGTACAGTTCAATGGGCCTaGCATGACCTTCCCTTGGAGGCGCTTGCTGATAGCCTCCACTAC | + |
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Preference number: 5 (lower is better) Translates to: LYPAFDANCCTVQWA*HDLPLEALADSLHY Trigger: GTAGTGGAGGCTATCAGCAAGCGCCTCCAAGGGAAGGTCATGGCAGGCCCATTGAACTGTACAGCAATTTGCATCAAAGGCAGGATATAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111888.3 ENSMUST00000199839.5 |
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| CDS-3UTR CAA 90 bp | CCAGGTGTTAGCACTCAGGAAACAGAGGCAGGCACATCTCTGAGTTCAAGGCTAACAAGGAGGAGGATGTaGGAAAACACCTCGCTGTAT | + |
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Preference number: 5 (lower is better) Translates to: PGVSTQETEAGTSLSSRLTRRRM*ENTSLY Trigger: ATACAGCGAGGTGTTTTCCAACATCCTCCTCCTTGT...TAGCCTTGAACTCAGAGATGTGCCTGCCTCTGTTTCCTGAGTGCTAACACCTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111888.3 |
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| CDS-3UTR CAA 90 bp | AAAATGGGCATGATCATACTAGGTAGATGCCATGCTATAGATCAAAGCTGGGCTGGAGGCCAGTCGCCCTaGGGAAAACACCCTGTATCC | + |
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Preference number: 5 (lower is better) Translates to: KMGMIILGRCHAIDQSWAGGQSP*GKHPVS Trigger: GGATACAGGGTGTTTTCCCAAGGGCGACTGGCCTCC...AGCCCAGCTTTGATCTATAGCATGGCATCTACCTAGTATGATCATGCCCATTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111888.3 |
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| CDS-3UTR CAA 90 bp | CCAGGTGTTAGCACTCAGGAAACAGAGGCAGGCACATCTCTGAGTTCAAGGCTATTGCCAAAGGCACACTaGTGTTTCTGTCTTTCCATC | + |
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Preference number: 5 (lower is better) Translates to: PGVSTQETEAGTSLSSRLLPKAH*CFCLSI Trigger: GATGGAAAGACAGAAACACAAGTGTGCCTTTGGCAA...TAGCCTTGAACTCAGAGATGTGCCTGCCTCTGTTTCCTGAGTGCTAACACCTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111888.3 |
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| CDS-3UTR CAA 90 bp | TTGAGATGGGCATCACCAGGTGTTAGCACTCAGGAAACAGAGGCAGGCACATCTATGTTCCCCAGATTCTaGAGTCCTTTGTATTTCACC | + |
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Preference number: 5 (lower is better) Translates to: LRWASPGVSTQETEAGTSMFPRF*SPLYFT Trigger: GGTGAAATACAAAGGACTCAAGAATCTGGGGAACAT...AGATGTGCCTGCCTCTGTTTCCTGAGTGCTAACACCTGGTGATGCCCATCTCAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111888.3 |
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| CDS-3UTR CAA 90 bp | AACAAAATGGGCATGATCATACTAGGTAGATGCCATGCTATAGATCAAAGCTGGGCAGGAAACACAGGTTaGAAAGTGCCAGGTTTAGGA | + |
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Preference number: 5 (lower is better) Translates to: NKMGMIILGRCHAIDQSWAGNTG*KVPGLG Trigger: TCCTAAACCTGGCACTTTCAAACCTGTGTTTCCTGC...CCAGCTTTGATCTATAGCATGGCATCTACCTAGTATGATCATGCCCATTTTGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111888.3 |
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| CDS-3UTR CAA 90 bp | AACAAAATGGGCATGATCATACTAGGTAGATGCCATGCTATAGATCAAAGCTGGATAGCCTCCACTACTTaGATAGGGGATATCATTGCA | + |
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Preference number: 5 (lower is better) Translates to: NKMGMIILGRCHAIDQSWIASTT*IGDIIA Trigger: TGCAATGATATCCCCTATCAAAGTAGTGGAGGCTAT...CCAGCTTTGATCTATAGCATGGCATCTACCTAGTATGATCATGCCCATTTTGTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111888.3 |
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| CDS-3UTR CAA 90 bp | AAAATGGGCATGATCATACTAGGTAGATGCCATGCTATAGATCAAAGCTGGGCTTATTATATCCTGCCTTaGATGCAAATTGCTGTACAG | + |
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Preference number: 5 (lower is better) Translates to: KMGMIILGRCHAIDQSWAYYILP*MQIAVQ Trigger: CTGTACAGCAATTTGCATCAAAGGCAGGATATAATA...AGCCCAGCTTTGATCTATAGCATGGCATCTACCTAGTATGATCATGCCCATTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111888.3 |
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| CDS CCA 72 bp | GTCCCATTGCCAGGGCTTTCCCCGTGTGCTGCAGTATaGGCCCAGAACGGCAGGGGAAGCAGGAAACACAGG | + |
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Preference number: 6 (lower is better) Translates to: VPLPGLSPCAAV*AQNGRGSRKHR Trigger: CCTGTGTTTCCTGCTTCCCCTGCCGTTCTGGGCCCATACTGCAGCACACGGGGAAAGCCCTGGCAATGGGAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000111888.3 ENSMUST00000195968.2 ENSMUST00000199839.5 |
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| CDS GCA 72 bp | TTTACAGGTCCCATTGCCAGGGCTTTCCCCGTGTGCTaGAGTATGGGCCCAGAACGGCAGGGGAAGCAGGAA | + |
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Preference number: 6 (lower is better) Translates to: FTGPIARAFPVC*SMGPERQGKQE Trigger: TTCCTGCTTCCCCTGCCGTTCTGGGCCCATACTGCAGCACACGGGGAAAGCCCTGGCAATGGGACCTGTAAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000111888.3 ENSMUST00000195968.2 ENSMUST00000199839.5 |
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| CDS GCA 72 bp | GTGGGTGGTCGCTACCAGCTGTGTGACCTGAACACTTaGGTCCAGGTGGTAGCTGCTCTTCTCATCCTGCAG | + |
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Preference number: 6 (lower is better) Translates to: VGGRYQLCDLNT*VQVVAALLILQ Trigger: CTGCAGGATGAGAAGAGCAGCTACCACCTGGACGCAAGTGTTCAGGTCACACAGCTGGTAGCGACCACCCAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111888.3 ENSMUST00000199839.5 |
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| CDS CAA 72 bp | GAGGAGTGGAGTCCGACAAGAACTTTACAGGTCCCATaGCCAGGGCTTTCCCCGTGTGCTGCAGTATGGGCC | + |
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Preference number: 6 (lower is better) Translates to: EEWSPTRTLQVP*PGLSPCAAVWA Trigger: GGCCCATACTGCAGCACACGGGGAAAGCCCTGGCAATGGGACCTGTAAAGTTCTTGTCGGACTCCACTCCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000111888.3 ENSMUST00000195968.2 ENSMUST00000199839.5 |
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| CDS TCA 72 bp | CCAGGATGCACGCAACAATACCACAAGACACTGTCGTaGAGATGGAGGCCAGTCGCCCTTGGGAAAACACCC | + |
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Preference number: 6 (lower is better) Translates to: PGCTQQYHKTLS*RWRPVALGKTP Trigger: GGGTGTTTTCCCAAGGGCGACTGGCCTCCATCTTCACGACAGTGTCTTGTGGTATTGTTGCGTGCATCCTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111888.3 ENSMUST00000199839.5 |
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| CDS GCA 72 bp | GAGGCCAGTCGCCCTTGGGAAAACACCCTGTATCCTTaGACAAGGAGGAGGATGTTGGAAAACACCTCGCTG | + |
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Preference number: 6 (lower is better) Translates to: EASRPWENTLYP*TRRRMLENTSL Trigger: CAGCGAGGTGTTTTCCAACATCCTCCTCCTTGTGCAAGGATACAGGGTGTTTTCCCAAGGGCGACTGGCCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111888.3 ENSMUST00000199839.5 |
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| CDS CCA 72 bp | CAAGACACTGTCGTGAAGATGGAGGCCAGTCGCCCTTaGGAAAACACCCTGTATCCTTGCACAAGGAGGAGG | + |
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Preference number: 6 (lower is better) Translates to: QDTVVKMEASRP*ENTLYPCTRRR Trigger: CCTCCTCCTTGTGCAAGGATACAGGGTGTTTTCCCAAGGGCGACTGGCCTCCATCTTCACGACAGTGTCTTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111888.3 ENSMUST00000199839.5 |
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| CDS CAA 90 bp | CGCCCTTGGGAAAACACCCTGTATCCTTGCACAAGGAGGAGGATGTaGGAAAACACCTCGCTGTATAAGCCCGAGGAGTGGAGTCCGACA | + |
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Preference number: 6 (lower is better) Translates to: RPWENTLYPCTRRRM*ENTSLYKPEEWSPT Trigger: TGTCGGACTCCACTCCTCGGGCTTATACAGCGAGGTGTTTTCCAACATCCTCCTCCTTGTGCAAGGATACAGGGTGTTTTCCCAAGGGCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111888.3 ENSMUST00000199839.5 |
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| CDS TCA 72 bp | TGTAAGGCGCCCACATCAAAAGGAACACGCCCGTTATaGCAAGAGCCGGCTTGTGGAGGTCGTACTGTCTCT | + |
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Preference number: 6 (lower is better) Translates to: CKAPTSKGTRPL*QEPACGGRTVS Trigger: AGAGACAGTACGACCTCCACAAGCCGGCTCTTGTCATAACGGGCGTGTTCCTTTTGATGTGGGCGCCTTACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111888.3 ENSMUST00000199839.5 |
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| CDS CCA 72 bp | AAAAGGAACACGCCCGTTATGACAAGAGCCGGCTTGTaGAGGTCGTACTGTCTCTCCCTGAAGCTCTGCCTT | + |
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Preference number: 6 (lower is better) Translates to: KRNTPVMTRAGL*RSYCLSLKLCL Trigger: AAGGCAGAGCTTCAGGGAGAGACAGTACGACCTCCACAAGCCGGCTCTTGTCATAACGGGCGTGTTCCTTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111888.3 ENSMUST00000199839.5 |
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| CDS CAA 72 bp | CCTTTGTATTTCACCAAGATAAACACCGCCAGCACGTaGTCCAAGAGACCCACCGCAAACACCGCGCAGCAG | + |
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Preference number: 6 (lower is better) Translates to: PLYFTKINTAST*SKRPTANTAQQ Trigger: CTGCTGCGCGGTGTTTGCGGTGGGTCTCTTGGACAACGTGCTGGCGGTGTTTATCTTGGTGAAATACAAAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000111888.3 ENSMUST00000195968.2 ENSMUST00000199839.5 |
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| CDS CAA 72 bp | GGGCCCAGAACGGCAGGGGAAGCAGGAAACACAGGTTaGAAAGTGCCAGGTTTAGGAAGTAGATGTTCCCCA | + |
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Preference number: 6 (lower is better) Translates to: GPRTAGEAGNTG*KVPGLGSRCSP Trigger: TGGGGAACATCTACTTCCTAAACCTGGCACTTTCAAACCTGTGTTTCCTGCTTCCCCTGCCGTTCTGGGCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000111888.3 ENSMUST00000195968.2 ENSMUST00000199839.5 |
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| CDS CAA 72 bp | ATCAAAAGGAACACGCCCGTTATGACAAGAGCCGGCTaGTGGAGGTCGTACTGTCTCTCCCTGAAGCTCTGC | + |
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Preference number: 6 (lower is better) Translates to: IKRNTPVMTRAG*WRSYCLSLKLC Trigger: GCAGAGCTTCAGGGAGAGACAGTACGACCTCCACAAGCCGGCTCTTGTCATAACGGGCGTGTTCCTTTTGAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111888.3 ENSMUST00000199839.5 |
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| CDS GCA 72 bp | TCCAGAGCGGCGCTTCGATTGGCAAGAAGTGAGGTTTaGCAAAGGCACACTTGTGTTTCTGTCTTTCCATCC | + |
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Preference number: 6 (lower is better) Translates to: SRAALRLARSEV*QRHTCVSVFPS Trigger: GGATGGAAAGACAGAAACACAAGTGTGCCTTTGGCAAACCTCACTTCTTGCCAATCGAAGCGCCGCTCTGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111888.3 ENSMUST00000199839.5 |
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| CDS GCA 72 bp | GGCTTGTGGAGGTCGTACTGTCTCTCCCTGAAGCTCTaGCTTCTCCTCAGTTGCCTGCAGCAGATTATAAAA | + |
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Preference number: 6 (lower is better) Translates to: GLWRSYCLSLKL*LLLSCLQQIIK Trigger: TTTTATAATCTGCTGCAGGCAACTGAGGAGAAGGCAGAGCTTCAGGGAGAGACAGTACGACCTCCACAAGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111888.3 ENSMUST00000199839.5 |
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| CDS CCA 72 bp | TATCCTGCCTTTGATGCAAATTGCTGTACAGTTCAATaGGCCTGCCATGACCTTCCCTTGGAGGCGCTTGCT | + |
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Preference number: 6 (lower is better) Translates to: YPAFDANCCTVQ*ACHDLPLEALA Trigger: AGCAAGCGCCTCCAAGGGAAGGTCATGGCAGGCCCATTGAACTGTACAGCAATTTGCATCAAAGGCAGGATA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111888.3 ENSMUST00000199839.5 |
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| CDS CAA 72 bp | GAAAACACCCTGTATCCTTGCACAAGGAGGAGGATGTaGGAAAACACCTCGCTGTATAAGCCCGAGGAGTGG | + |
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Preference number: 6 (lower is better) Translates to: ENTLYPCTRRRM*ENTSLYKPEEW Trigger: CCACTCCTCGGGCTTATACAGCGAGGTGTTTTCCAACATCCTCCTCCTTGTGCAAGGATACAGGGTGTTTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111888.3 ENSMUST00000199839.5 |
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| CDS TCA 72 bp | ACGTACTTCCAGAGCGGCGCTTCGATTGGCAAGAAGTaGGGTTTGCCAAAGGCACACTTGTGTTTCTGTCTT | + |
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Preference number: 6 (lower is better) Translates to: TYFQSGASIGKK*GLPKAHLCFCL Trigger: AAGACAGAAACACAAGTGTGCCTTTGGCAAACCTCACTTCTTGCCAATCGAAGCGCCGCTCTGGAAGTACGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111888.3 ENSMUST00000199839.5 |
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| CDS TCA 72 bp | CAGCAGAGGAAAAGCAAGTACCAAGATGATCATTTTTaGCGTCAGAACGTACTTCCAGAGCGGCGCTTCGAT | + |
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Preference number: 6 (lower is better) Translates to: QQRKSKYQDDHF*RQNVLPERRFD Trigger: ATCGAAGCGCCGCTCTGGAAGTACGTTCTGACGTCAAAAATGATCATCTTGGTACTTGCTTTTCCTCTGCTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000111888.3 ENSMUST00000199839.5 |
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