RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CCR9 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000029530

Ensembl transcript IDs: ENSMUST00000111454.4, ENSMUST00000163559.8, ENSMUST00000166236.9, ENSMUST00000168910.2, ENSMUST00000180093.2

Found 278 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GAAAGGGGAGGTAGCAGGGAGCCTCAGAAGGAAAGGCCATGTCACTaGCAAAGAGATGGGAGAACCTGCAGCAAGTGCCTCTTGCCTGAG +
Preference number: 1 (lower is better)
Translates to: ERGGSREPQKERPCH*QRDGRTCSKCLLPE
Trigger: CTCAGGCAAGAGGCACTTGCTGCAGGTTCTCCCATCTCTTTGCCAGTGACATGGCCTTTCCTTCTGAGGCTCCCTGCTACCTCCCCTTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR GCA 90 bp GAAAGGCCATGTCACTGGCAAAGAGATGGGAGAACCTGCAGCAAGTaGCTCTTGCCTGAGGAAGTCCCAAAGGCTAGGTTCCCACCATCC +
Preference number: 1 (lower is better)
Translates to: ERPCHWQRDGRTCSK*LLPEEVPKARFPPS
Trigger: GGATGGTGGGAACCTAGCCTTTGGGACTTCCTCAGGCAAGAGGCACTTGCTGCAGGTTCTCCCATCTCTTTGCCAGTGACATGGCCTTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR CCA 90 bp GTGTGTCTGGTTCCCATGGAAGCCAGAAGAGGGTGCTGGATCCCTTaGAACTTGAGTTACAGACAGCTGCAACCACCATATGGGTGCTGG +
Preference number: 1 (lower is better)
Translates to: VCLVPMEARRGCWIP*NLSYRQLQPPYGCW
Trigger: CCAGCACCCATATGGTGGTTGCAGCTGTCTGTAACTCAAGTTCCAAGGGATCCAGCACCCTCTTCTGGCTTCCATGGGAACCAGACACAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
3UTR GCA 90 bp CATGTCACTGGCAAAGAGATGGGAGAACCTGCAGCAAGTGCCTCTTaGCTGAGGAAGTCCCAAAGGCTAGGTTCCCACCATCCAAACATA +
Preference number: 1 (lower is better)
Translates to: HVTGKEMGEPAASAS*LRKSQRLGSHHPNI
Trigger: TATGTTTGGATGGTGGGAACCTAGCCTTTGGGACTTCCTCAGGCAAGAGGCACTTGCTGCAGGTTCTCCCATCTCTTTGCCAGTGACATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR GCA 90 bp AAGGCTGGGCTGTCTTTGCTGCTGCTCAAGCATCCTCCTCAGAACTaGAGTTACTATAACCAAAAACCAACTGCTGCGCTTCTGGAGTGC +
Preference number: 1 (lower is better)
Translates to: KAGLSLLLLKHPPQN*SYYNQKPTAALLEC
Trigger: GCACTCCAGAAGCGCAGCAGTTGGTTTTTGGTTATAGTAACTGCAGTTCTGAGGAGGATGCTTGAGCAGCAGCAAAGACAGCCCAGCCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR GCA 90 bp TGTGTACTAGATGTGTGTCTGGTTCCCATGGAAGCCAGAAGAGGGTaGTGGATCCCTTGGAACTTGAGTTACAGACAGCTGCAACCACCA +
Preference number: 1 (lower is better)
Translates to: CVLDVCLVPMEARRG*WIPWNLSYRQLQPP
Trigger: TGGTGGTTGCAGCTGTCTGTAACTCAAGTTCCAAGGGATCCAGCACCCTCTTCTGGCTTCCATGGGAACCAGACACACATCTAGTACACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
3UTR CCA 90 bp GTACTAGATGTGTGTCTGGTTCCCATGGAAGCCAGAAGAGGGTGCTaGATCCCTTGGAACTTGAGTTACAGACAGCTGCAACCACCATAT +
Preference number: 1 (lower is better)
Translates to: VLDVCLVPMEARRGC*IPWNLSYRQLQPPY
Trigger: ATATGGTGGTTGCAGCTGTCTGTAACTCAAGTTCCAAGGGATCCAGCACCCTCTTCTGGCTTCCATGGGAACCAGACACACATCTAGTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
3UTR CCA 90 bp GTGCTATGTGATCTATCTCTTTTACAAAGCCTTCTGGTGTCTTGGTaGAGACTTTTAAGCCACGCTGCCTCAGGACCGACTGTAAGGCGG +
Preference number: 1 (lower is better)
Translates to: VLCDLSLLQSLLVSW*RLLSHAASGPTVRR
Trigger: CCGCCTTACAGTCGGTCCTGAGGCAGCGTGGCTTAAAAGTCTCCACCAAGACACCAGAAGGCTTTGTAAAAGAGATAGATCACATAGCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000166236.9
3UTR TCA 90 bp GAGGGGATAGTTAAGGACCCTGAGCACGCAAACCACGGTGCTATGTaGTCTATCTCTTTTACAAAGCCTTCTGGTGTCTTGGTGGAGACT +
Preference number: 1 (lower is better)
Translates to: EGIVKDPEHANHGAM*SISFTKPSGVLVET
Trigger: AGTCTCCACCAAGACACCAGAAGGCTTTGTAAAAGAGATAGATCACATAGCACCGTGGTTTGCGTGCTCAGGGTCCTTAACTATCCCCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000166236.9
3UTR CCA 90 bp ACGGTGCTATGTGATCTATCTCTTTTACAAAGCCTTCTGGTGTCTTaGTGGAGACTTTTAAGCCACGCTGCCTCAGGACCGACTGTAAGG +
Preference number: 1 (lower is better)
Translates to: TVLCDLSLLQSLLVS*WRLLSHAASGPTVR
Trigger: CCTTACAGTCGGTCCTGAGGCAGCGTGGCTTAAAAGTCTCCACCAAGACACCAGAAGGCTTTGTAAAAGAGATAGATCACATAGCACCGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000166236.9
3UTR GCA 90 bp ATATGGGTGCTGGGAGTTGAACCTGGAGCATCTGAAAGGGCTCTCTaGTCCTTTACCTTAATTTTTGAAACAGGTTCTCTCACTGAATCC +
Preference number: 1 (lower is better)
Translates to: IWVLGVEPGASERAL*SFTLIFETGSLTES
Trigger: GGATTCAGTGAGAGAACCTGTTTCAAAAATTAAGGTAAAGGAGCAGAGAGCCCTTTCAGATGCTCCAGGTTCAACTCCCAGCACCCATAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
3UTR CCA 90 bp GACAGTTTTGAGCTGCCATGTAGGTGTTGGGAATTGAACCCTGGTTaGGAATTAACCACTGAGCCATCTCTCCAACCCTTTGGATTTTTA +
Preference number: 1 (lower is better)
Translates to: DSFELPCRCWELNPG*ELTTEPSLQPFGFL
Trigger: TAAAAATCCAAAGGGTTGGAGAGATGGCTCAGTGGTTAATTCCCAACCAGGGTTCAATTCCCAACACCTACATGGCAGCTCAAAACTGTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR TCA 90 bp TGTAATGCAATGCTGTGGCTGTGTAGGTCTTTGTTGGGATCTGAATaGGAATGGCCCTCACAGGGTCATATATTTAAATGCTTGGTCTGC +
Preference number: 1 (lower is better)
Translates to: CNAMLWLCRSLLGSE*EWPSQGHIFKCLVC
Trigger: GCAGACCAAGCATTTAAATATATGACCCTGTGAGGGCCATTCTCATTCAGATCCCAACAAAGACCTACACAGCCACAGCATTGCATTACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
3UTR CAA 90 bp CTGGTTCCCATGGAAGCCAGAAGAGGGTGCTGGATCCCTTGGAACTaGAGTTACAGACAGCTGCAACCACCATATGGGTGCTGGGAGTTG +
Preference number: 2 (lower is better)
Translates to: LVPMEARRGCWIPWN*SYRQLQPPYGCWEL
Trigger: CAACTCCCAGCACCCATATGGTGGTTGCAGCTGTCTGTAACTCAAGTTCCAAGGGATCCAGCACCCTCTTCTGGCTTCCATGGGAACCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
3UTR-3UTR GCA 90 bp CTCTGCCTCCAAAACCCAGCTGCACTGATGATCAGCATGTGCAAGGCTGGGCTGCCAAAAACCAACTGCTaGGCTTCTGGAGTGCTCAGT +
Preference number: 2 (lower is better)
Translates to: LCLQNPAALMISMCKAGLPKTNC*ASGVLS
Trigger: ACTGAGCACTCCAGAAGCGCAGCAGTTGGTTTTTGG...CAGCCCAGCCTTGCACATGCTGATCATCAGTGCAGCTGGGTTTTGGAGGCAGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR-3UTR GCA 90 bp GAGGTAGCAGGGAGCCTCAGAAGGAAAGGCCATGTCACTGGCAAAGAGATGGGAGGCTGTCTTTGCTGCTaGTCAAGCATCCTCCTCAGA +
Preference number: 2 (lower is better)
Translates to: EVAGSLRRKGHVTGKEMGGCLCC*SSILLR
Trigger: TCTGAGGAGGATGCTTGAGCAGCAGCAAAGACAGCC...TCCCATCTCTTTGCCAGTGACATGGCCTTTCCTTCTGAGGCTCCCTGCTACCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR-3UTR CCA 90 bp AGAAGGAAAGGCCATGTCACTGGCAAAGAGATGGGAGAACCTGCAGCAAGTGCCCAGCATGTGCAAGGCTaGGCTGTCTTTGCTGCTGCT +
Preference number: 2 (lower is better)
Translates to: RRKGHVTGKEMGEPAASAQHVQG*AVFAAA
Trigger: AGCAGCAGCAAAGACAGCCCAGCCTTGCACATGCTG...GGCACTTGCTGCAGGTTCTCCCATCTCTTTGCCAGTGACATGGCCTTTCCTTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR CAA 90 bp CCATGTCACTGGCAAAGAGATGGGAGAACCTGCAGCAAGTGCCTCTaGCCTGAGGAAGTCCCAAAGGCTAGGTTCCCACCATCCAAACAT +
Preference number: 2 (lower is better)
Translates to: PCHWQRDGRTCSKCL*PEEVPKARFPPSKH
Trigger: ATGTTTGGATGGTGGGAACCTAGCCTTTGGGACTTCCTCAGGCAAGAGGCACTTGCTGCAGGTTCTCCCATCTCTTTGCCAGTGACATGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR CAA 90 bp TGTGTGTCTGGTTCCCATGGAAGCCAGAAGAGGGTGCTGGATCCCTaGGAACTTGAGTTACAGACAGCTGCAACCACCATATGGGTGCTG +
Preference number: 2 (lower is better)
Translates to: CVSGSHGSQKRVLDP*ELELQTAATTIWVL
Trigger: CAGCACCCATATGGTGGTTGCAGCTGTCTGTAACTCAAGTTCCAAGGGATCCAGCACCCTCTTCTGGCTTCCATGGGAACCAGACACACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
3UTR-3UTR GCA 90 bp CAGGGAGCCTCAGAAGGAAAGGCCATGTCACTGGCAAAGAGATGGGAGAACCTGCCAAAAACCAACTGCTaGGCTTCTGGAGTGCTCAGT +
Preference number: 2 (lower is better)
Translates to: QGASEGKAMSLAKRWENLPKTNC*ASGVLS
Trigger: ACTGAGCACTCCAGAAGCGCAGCAGTTGGTTTTTGG...CAGGTTCTCCCATCTCTTTGCCAGTGACATGGCCTTTCCTTCTGAGGCTCCCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR-3UTR GCA 90 bp CAGGGAGCCTCAGAAGGAAAGGCCATGTCACTGGCAAAGAGATGGGAGAACCTGCTGATGATCAGCATGTaGAAGGCTGGGCTGTCTTTG +
Preference number: 2 (lower is better)
Translates to: QGASEGKAMSLAKRWENLLMISM*KAGLSL
Trigger: CAAAGACAGCCCAGCCTTGCACATGCTGATCATCAG...CAGGTTCTCCCATCTCTTTGCCAGTGACATGGCCTTTCCTTCTGAGGCTCCCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR-3UTR CCA 90 bp GAGGTAGCAGGGAGCCTCAGAAGGAAAGGCCATGTCACTGGCAAAGAGATGGGATGCCTGACACAGAAGTaGATTGGGAGCAAGACTCCA +
Preference number: 2 (lower is better)
Translates to: EVAGSLRRKGHVTGKEMGCLTQK*IGSKTP
Trigger: TGGAGTCTTGCTCCCAATCCACTTCTGTGTCAGGCA...TCCCATCTCTTTGCCAGTGACATGGCCTTTCCTTCTGAGGCTCCCTGCTACCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR-3UTR GCA 90 bp GAGGTAGCAGGGAGCCTCAGAAGGAAAGGCCATGTCACTGGCAAAGAGATGGGAGCTGCGCTTCTGGAGTaGTCAGTTTTGGAAACTTTG +
Preference number: 2 (lower is better)
Translates to: EVAGSLRRKGHVTGKEMGAALLE*SVLETL
Trigger: CAAAGTTTCCAAAACTGAGCACTCCAGAAGCGCAGC...TCCCATCTCTTTGCCAGTGACATGGCCTTTCCTTCTGAGGCTCCCTGCTACCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR-3UTR CCA 90 bp GAAACCCACACCAGGCCCAGTCTCACTCTACTGCATATCTGTGGATCAAGCATACAGCATGTGCAAGGCTaGGCTGTCTTTGCTGCTGCT +
Preference number: 2 (lower is better)
Translates to: ETHTRPSLTLLHICGSSIQHVQG*AVFAAA
Trigger: AGCAGCAGCAAAGACAGCCCAGCCTTGCACATGCTG...TATGCTTGATCCACAGATATGCAGTAGAGTGAGACTGGGCCTGGTGTGGGTTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
3UTR-3UTR CCA 90 bp GAGGTAGCAGGGAGCCTCAGAAGGAAAGGCCATGTCACTGGCAAAGAGATGGGAGACAGTGGTTCTCCCTaGCTCAAGAGAGATCAAAGA +
Preference number: 2 (lower is better)
Translates to: EVAGSLRRKGHVTGKEMGDSGSP*LKRDQR
Trigger: TCTTTGATCTCTCTTGAGCCAGGGAGAACCACTGTC...TCCCATCTCTTTGCCAGTGACATGGCCTTTCCTTCTGAGGCTCCCTGCTACCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR-3UTR CCA 90 bp CAGGGAGCCTCAGAAGGAAAGGCCATGTCACTGGCAAAGAGATGGGAGAACCTGTGGTCAGCTGTACATTaGCTGACTAACCTGTCTGAC +
Preference number: 2 (lower is better)
Translates to: QGASEGKAMSLAKRWENLWSAVH*LTNLSD
Trigger: GTCAGACAGGTTAGTCAGCCAATGTACAGCTGACCA...CAGGTTCTCCCATCTCTTTGCCAGTGACATGGCCTTTCCTTCTGAGGCTCCCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR-3UTR CCA 90 bp AGAAGGAAAGGCCATGTCACTGGCAAAGAGATGGGAGAACCTGCAGCAAGTGCCTGCCTGACACAGAAGTaGATTGGGAGCAAGACTCCA +
Preference number: 2 (lower is better)
Translates to: RRKGHVTGKEMGEPAASACLTQK*IGSKTP
Trigger: TGGAGTCTTGCTCCCAATCCACTTCTGTGTCAGGCA...GGCACTTGCTGCAGGTTCTCCCATCTCTTTGCCAGTGACATGGCCTTTCCTTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR CAA 90 bp AACCCAGCTGCACTGATGATCAGCATGTGCAAGGCTGGGCTGTCTTaGCTGCTGCTCAAGCATCCTCCTCAGAACTGCAGTTACTATAAC +
Preference number: 2 (lower is better)
Translates to: NPAALMISMCKAGLS*LLLKHPPQNCSYYN
Trigger: GTTATAGTAACTGCAGTTCTGAGGAGGATGCTTGAGCAGCAGCAAAGACAGCCCAGCCTTGCACATGCTGATCATCAGTGCAGCTGGGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR-3UTR TCA 90 bp AGAAGGAAAGGCCATGTCACTGGCAAAGAGATGGGAGAACCTGCAGCAAGTGCCATGGTATCTTCTGCCTaGCACAGAAGTGGATTGGGA +
Preference number: 2 (lower is better)
Translates to: RRKGHVTGKEMGEPAASAMVSSA*HRSGLG
Trigger: TCCCAATCCACTTCTGTGTCAGGCAGAAGATACCAT...GGCACTTGCTGCAGGTTCTCCCATCTCTTTGCCAGTGACATGGCCTTTCCTTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR-3UTR GCA 90 bp GAAACCCACACCAGGCCCAGTCTCACTCTACTGCATATCTGTGGATCAAGCATAGGCTGTCTTTGCTGCTaGTCAAGCATCCTCCTCAGA +
Preference number: 2 (lower is better)
Translates to: ETHTRPSLTLLHICGSSIGCLCC*SSILLR
Trigger: TCTGAGGAGGATGCTTGAGCAGCAGCAAAGACAGCC...TATGCTTGATCCACAGATATGCAGTAGAGTGAGACTGGGCCTGGTGTGGGTTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
3UTR-3UTR GCA 90 bp GAGGTAGCAGGGAGCCTCAGAAGGAAAGGCCATGTCACTGGCAAAGAGATGGGATCCTTTCCTAGTTTGTaGTTGCAGCTAGGTTTGGAC +
Preference number: 2 (lower is better)
Translates to: EVAGSLRRKGHVTGKEMGSFPSL*LQLGLD
Trigger: GTCCAAACCTAGCTGCAAGCACAAACTAGGAAAGGA...TCCCATCTCTTTGCCAGTGACATGGCCTTTCCTTCTGAGGCTCCCTGCTACCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR-3UTR GCA 90 bp GCAACCACCATATGGGTGCTGGGAGTTGAACCTGGAGCATCTGAAAGGGCTCTCTCCTTTCCTAGTTTGTaGTTGCAGCTAGGTTTGGAC +
Preference number: 2 (lower is better)
Translates to: ATTIWVLGVEPGASERALSFPSL*LQLGLD
Trigger: GTCCAAACCTAGCTGCAAGCACAAACTAGGAAAGGA...GAGAGCCCTTTCAGATGCTCCAGGTTCAACTCCCAGCACCCATATGGTGGTTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
3UTR-3UTR GCA 90 bp GCCCAGTCTCACTCTACTGCATATCTGTGGATCAAGCATAAGCTCTCAGCGCCAAGATCATTCTGCCTCTaGCTCCCAAGTGCTGGGATT +
Preference number: 2 (lower is better)
Translates to: AQSHSTAYLWIKHKLSAPRSFCL*LPSAGI
Trigger: AATCCCAGCACTTGGGAGGCAGAGGCAGAATGATCT...TGGCGCTGAGAGCTTATGCTTGATCCACAGATATGCAGTAGAGTGAGACTGGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
3UTR-3UTR CCA 90 bp TCTCACTCTACTGCATATCTGTGGATCAAGCATAAGCTCTCAGCGCCATCCTTGCAGCATGTGCAAGGCTaGGCTGTCTTTGCTGCTGCT +
Preference number: 2 (lower is better)
Translates to: SHSTAYLWIKHKLSAPSLQHVQG*AVFAAA
Trigger: AGCAGCAGCAAAGACAGCCCAGCCTTGCACATGCTG...CAAGGATGGCGCTGAGAGCTTATGCTTGATCCACAGATATGCAGTAGAGTGAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
3UTR-3UTR CCA 90 bp GCCCAGTCTCACTCTACTGCATATCTGTGGATCAAGCATAAGCTCTCAGCGCCATCACTGGCAAAGAGATaGGAGAACCTGCAGCAAGTG +
Preference number: 2 (lower is better)
Translates to: AQSHSTAYLWIKHKLSAPSLAKR*ENLQQV
Trigger: CACTTGCTGCAGGTTCTCCCATCTCTTTGCCAGTGA...TGGCGCTGAGAGCTTATGCTTGATCCACAGATATGCAGTAGAGTGAGACTGGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
3UTR-3UTR CCA 90 bp TATGGGTGCTGGGAGTTGAACCTGGAGCATCTGAAAGGGCTCTCTGCTCCTTTACTGCCATGTAGGTGTTaGGAATTGAACCCTGGTTGG +
Preference number: 2 (lower is better)
Translates to: YGCWELNLEHLKGLSAPLLPCRC*ELNPGW
Trigger: CCAACCAGGGTTCAATTCCCAACACCTACATGGCAG...TAAAGGAGCAGAGAGCCCTTTCAGATGCTCCAGGTTCAACTCCCAGCACCCATA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
3UTR-3UTR TCA 90 bp AGAAGGAAAGGCCATGTCACTGGCAAAGAGATGGGAGAACCTGCAGCAAGTGCCAGAAACTGGGAACACTaGAGAAACTCTGCCTCCAAA +
Preference number: 2 (lower is better)
Translates to: RRKGHVTGKEMGEPAASARNWEH*RNSASK
Trigger: TTTGGAGGCAGAGTTTCTTCAGTGTTCCCAGTTTCT...GGCACTTGCTGCAGGTTCTCCCATCTCTTTGCCAGTGACATGGCCTTTCCTTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR-3UTR GCA 90 bp TCCTCTGGAACTGGAGTTGAAGACAGTTTTGAGCTGCCATGTAGGTGTTGGGAAGGCTGTCTTTGCTGCTaGTCAAGCATCCTCCTCAGA +
Preference number: 2 (lower is better)
Translates to: SSGTGVEDSFELPCRCWEGCLCC*SSILLR
Trigger: TCTGAGGAGGATGCTTGAGCAGCAGCAAAGACAGCC...TTCCCAACACCTACATGGCAGCTCAAAACTGTCTTCAACTCCAGTTCCAGAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR-3UTR GCA 90 bp GGGACAGTGGTTCTCCCTGGCTCAAGAGAGATCAAAGAGATCAATCAGAATGGCCTGATGATCAGCATGTaGAAGGCTGGGCTGTCTTTG +
Preference number: 2 (lower is better)
Translates to: GTVVLPGSREIKEINQNGLMISM*KAGLSL
Trigger: CAAAGACAGCCCAGCCTTGCACATGCTGATCATCAG...GCCATTCTGATTGATCTCTTTGATCTCTCTTGAGCCAGGGAGAACCACTGTCCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR-3UTR GCA 90 bp GCAACCACCATATGGGTGCTGGGAGTTGAACCTGGAGCATCTGAAAGGGCTCTCCATTGGTGTTTTGCCTaGTTGTATGTCTGTGTGAGA +
Preference number: 2 (lower is better)
Translates to: ATTIWVLGVEPGASERALHWCFA*LYVCVR
Trigger: TCTCACACAGACATACAAGCAGGCAAAACACCAATG...GAGAGCCCTTTCAGATGCTCCAGGTTCAACTCCCAGCACCCATATGGTGGTTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
3UTR-3UTR GCA 90 bp GCAACCACCATATGGGTGCTGGGAGTTGAACCTGGAGCATCTGAAAGGGCTCTCTGTGCATTGGTGTTTTaGCTGCTTGTATGTCTGTGT +
Preference number: 2 (lower is better)
Translates to: ATTIWVLGVEPGASERALCALVF*LLVCLC
Trigger: ACACAGACATACAAGCAGGCAAAACACCAATGCACA...GAGAGCCCTTTCAGATGCTCCAGGTTCAACTCCCAGCACCCATATGGTGGTTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
3UTR-3UTR GCA 90 bp GCAACCACCATATGGGTGCTGGGAGTTGAACCTGGAGCATCTGAAAGGGCTCTCGAATGTGTAATGCAATaGTGTGGCTGTGTAGGTCTT +
Preference number: 2 (lower is better)
Translates to: ATTIWVLGVEPGASERALECVMQ*CGCVGL
Trigger: AAGACCTACACAGCCACAGCATTGCATTACACATTC...GAGAGCCCTTTCAGATGCTCCAGGTTCAACTCCCAGCACCCATATGGTGGTTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
3UTR CAA 90 bp ACTGGAGTTGAAGACAGTTTTGAGCTGCCATGTAGGTGTTGGGAATaGAACCCTGGTTGGGAATTAACCACTGAGCCATCTCTCCAACCC +
Preference number: 2 (lower is better)
Translates to: TGVEDSFELPCRCWE*NPGWELTTEPSLQP
Trigger: GGGTTGGAGAGATGGCTCAGTGGTTAATTCCCAACCAGGGTTCAATTCCCAACACCTACATGGCAGCTCAAAACTGTCTTCAACTCCAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR-3UTR GCA 90 bp TGTTTCAGAAACCCACACCAGGCCCAGTCTCACTCTACTGCATATCTGTGGATCGCTGCGCTTCTGGAGTaGTCAGTTTTGGAAACTTTG +
Preference number: 2 (lower is better)
Translates to: CFRNPHQAQSHSTAYLWIAALLE*SVLETL
Trigger: CAAAGTTTCCAAAACTGAGCACTCCAGAAGCGCAGC...GATCCACAGATATGCAGTAGAGTGAGACTGGGCCTGGTGTGGGTTTCTGAAACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
3UTR-3UTR GCA 90 bp TATGGGTGCTGGGAGTTGAACCTGGAGCATCTGAAAGGGCTCTCTGCTCCTTTATCCTTTCCTAGTTTGTaGTTGCAGCTAGGTTTGGAC +
Preference number: 2 (lower is better)
Translates to: YGCWELNLEHLKGLSAPLSFPSL*LQLGLD
Trigger: GTCCAAACCTAGCTGCAAGCACAAACTAGGAAAGGA...TAAAGGAGCAGAGAGCCCTTTCAGATGCTCCAGGTTCAACTCCCAGCACCCATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
3UTR-3UTR CCA 90 bp TCCTCTGGAACTGGAGTTGAAGACAGTTTTGAGCTGCCATGTAGGTGTTGGGAAGAAAGGCCATGTCACTaGCAAAGAGATGGGAGAACC +
Preference number: 2 (lower is better)
Translates to: SSGTGVEDSFELPCRCWEERPCH*QRDGRT
Trigger: GGTTCTCCCATCTCTTTGCCAGTGACATGGCCTTTC...TTCCCAACACCTACATGGCAGCTCAAAACTGTCTTCAACTCCAGTTCCAGAGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR-3UTR TCA 90 bp GGGACAGTGGTTCTCCCTGGCTCAAGAGAGATCAAAGAGATCAATCAGAATGGCAGAAACTGGGAACACTaGAGAAACTCTGCCTCCAAA +
Preference number: 2 (lower is better)
Translates to: GTVVLPGSREIKEINQNGRNWEH*RNSASK
Trigger: TTTGGAGGCAGAGTTTCTTCAGTGTTCCCAGTTTCT...GCCATTCTGATTGATCTCTTTGATCTCTCTTGAGCCAGGGAGAACCACTGTCCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR-3UTR TCA 90 bp TCCTCTGGAACTGGAGTTGAAGACAGTTTTGAGCTGCCATGTAGGTGTTGGGAATTGGGAATTAACCACTaGGCCATCTCTCCAACCCTT +
Preference number: 2 (lower is better)
Translates to: SSGTGVEDSFELPCRCWELGINH*AISPTL
Trigger: AAGGGTTGGAGAGATGGCTCAGTGGTTAATTCCCAA...TTCCCAACACCTACATGGCAGCTCAAAACTGTCTTCAACTCCAGTTCCAGAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR-3UTR GCA 90 bp ACAGTGGTTCTCCCTGGCTCAAGAGAGATCAAAGAGATCAATCAGAATGGCATTGGCTGTCTTTGCTGCTaGTCAAGCATCCTCCTCAGA +
Preference number: 2 (lower is better)
Translates to: TVVLPGSREIKEINQNGIGCLCC*SSILLR
Trigger: TCTGAGGAGGATGCTTGAGCAGCAGCAAAGACAGCC...AATGCCATTCTGATTGATCTCTTTGATCTCTCTTGAGCCAGGGAGAACCACTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR-3UTR GCA 90 bp TCCTCTGGAACTGGAGTTGAAGACAGTTTTGAGCTGCCATGTAGGTGTTGGGAAAGGTGTACACTACCATaGCCAACCTACCAGTTCTTC +
Preference number: 2 (lower is better)
Translates to: SSGTGVEDSFELPCRCWERCTLP*PTYQFF
Trigger: GAAGAACTGGTAGGTTGGGCATGGTAGTGTACACCT...TTCCCAACACCTACATGGCAGCTCAAAACTGTCTTCAACTCCAGTTCCAGAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR-3UTR CCA 90 bp TCCTCTGGAACTGGAGTTGAAGACAGTTTTGAGCTGCCATGTAGGTGTTGGGAATGGTCAGCTGTACATTaGCTGACTAACCTGTCTGAC +
Preference number: 2 (lower is better)
Translates to: SSGTGVEDSFELPCRCWEWSAVH*LTNLSD
Trigger: GTCAGACAGGTTAGTCAGCCAATGTACAGCTGACCA...TTCCCAACACCTACATGGCAGCTCAAAACTGTCTTCAACTCCAGTTCCAGAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR-3UTR CCA 90 bp TGTACAAAGCCTGTGTTTCCTGTAGTGTTCCCAAACTCCCCATCACAAACCACAGAAAGGCCATGTCACTaGCAAAGAGATGGGAGAACC +
Preference number: 2 (lower is better)
Translates to: CTKPVFPVVFPNSPSQTTERPCH*QRDGRT
Trigger: GGTTCTCCCATCTCTTTGCCAGTGACATGGCCTTTC...TGTGGTTTGTGATGGGGAGTTTGGGAACACTACAGGAAACACAGGCTTTGTACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
3UTR-3UTR CCA 90 bp TGTACAAAGCCTGTGTTTCCTGTAGTGTTCCCAAACTCCCCATCACAAACCACACTGCCATGTAGGTGTTaGGAATTGAACCCTGGTTGG +
Preference number: 2 (lower is better)
Translates to: CTKPVFPVVFPNSPSQTTLPCRC*ELNPGW
Trigger: CCAACCAGGGTTCAATTCCCAACACCTACATGGCAG...TGTGGTTTGTGATGGGGAGTTTGGGAACACTACAGGAAACACAGGCTTTGTACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
3UTR-3UTR TCA 90 bp TCCTCTGGAACTGGAGTTGAAGACAGTTTTGAGCTGCCATGTAGGTGTTGGGAAAGAAACTGGGAACACTaGAGAAACTCTGCCTCCAAA +
Preference number: 2 (lower is better)
Translates to: SSGTGVEDSFELPCRCWERNWEH*RNSASK
Trigger: TTTGGAGGCAGAGTTTCTTCAGTGTTCCCAGTTTCT...TTCCCAACACCTACATGGCAGCTCAAAACTGTCTTCAACTCCAGTTCCAGAGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR-3UTR TCA 90 bp TCTTTATTGCTTACTTCTCAGGAAGACCCCGAACCCAGAAAATGGTGCTGCTTAGAATGTGTAGTGCTGTaGCTGTGTAGGTGTGTGCTG +
Preference number: 2 (lower is better)
Translates to: SLLLTSQEDPEPRKWCCLECVVL*LCRCVL
Trigger: CAGCACACACCTACACAGTCACAGCACTACACATTC...TAAGCAGCACCATTTTCTGGGTTCGGGGTCTTCCTGAGAAGTAAGCAATAAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000166236.9
3UTR-3UTR GCA 90 bp ACAGTGGTTCTCCCTGGCTCAAGAGAGATCAAAGAGATCAATCAGAATGGCATTCTGATGATCAGCATGTaGAAGGCTGGGCTGTCTTTG +
Preference number: 2 (lower is better)
Translates to: TVVLPGSREIKEINQNGILMISM*KAGLSL
Trigger: CAAAGACAGCCCAGCCTTGCACATGCTGATCATCAG...AATGCCATTCTGATTGATCTCTTTGATCTCTCTTGAGCCAGGGAGAACCACTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR-3UTR GCA 90 bp GAAACCCACACCAGGCCCAGTCTCACTCTACTGCATATCTGTGGATCAAGCATATGTGCATTGGTGTTTTaGCTGCTTGTATGTCTGTGT +
Preference number: 2 (lower is better)
Translates to: ETHTRPSLTLLHICGSSICALVF*LLVCLC
Trigger: ACACAGACATACAAGCAGGCAAAACACCAATGCACA...TATGCTTGATCCACAGATATGCAGTAGAGTGAGACTGGGCCTGGTGTGGGTTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
3UTR-3UTR CCA 90 bp TCTTTATTGCTTACTTCTCAGGAAGACCCCGAACCCAGAAAATGGTGCTGCTTATCACTGGCAAAGAGATaGGAGAACCTGCAGCAAGTG +
Preference number: 2 (lower is better)
Translates to: SLLLTSQEDPEPRKWCCLSLAKR*ENLQQV
Trigger: CACTTGCTGCAGGTTCTCCCATCTCTTTGCCAGTGA...TAAGCAGCACCATTTTCTGGGTTCGGGGTCTTCCTGAGAAGTAAGCAATAAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000166236.9
3UTR-3UTR CCA 90 bp TCTTTATTGCTTACTTCTCAGGAAGACCCCGAACCCAGAAAATGGTGCTGCTTAGGATGGGCAGTGACTTaGCACGAATTTACTCCAGCA +
Preference number: 2 (lower is better)
Translates to: SLLLTSQEDPEPRKWCCLGWAVT*HEFTPA
Trigger: TGCTGGAGTAAATTCGTGCCAAGTCACTGCCCATCC...TAAGCAGCACCATTTTCTGGGTTCGGGGTCTTCCTGAGAAGTAAGCAATAAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000166236.9
3UTR-3UTR GCA 90 bp ACAGTGGTTCTCCCTGGCTCAAGAGAGATCAAAGAGATCAATCAGAATGGCATTGCTGCGCTTCTGGAGTaGTCAGTTTTGGAAACTTTG +
Preference number: 2 (lower is better)
Translates to: TVVLPGSREIKEINQNGIAALLE*SVLETL
Trigger: CAAAGTTTCCAAAACTGAGCACTCCAGAAGCGCAGC...AATGCCATTCTGATTGATCTCTTTGATCTCTCTTGAGCCAGGGAGAACCACTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR-3UTR GCA 90 bp CTTTCACAACGGCATGATTTTTGCTTTAAGTTTGTTGTTCTCTTGCTCCCCAACAGAACCTGCAGCAAGTaGCTCTTGCCTGAGGAAGTC +
Preference number: 2 (lower is better)
Translates to: LSQRHDFCFKFVVLLLPNRTCSK*LLPEEV
Trigger: GACTTCCTCAGGCAAGAGGCACTTGCTGCAGGTTCT...GTTGGGGAGCAAGAGAACAACAAACTTAAAGCAAAAATCATGCCGTTGTGAAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000166236.9
3UTR-3UTR CCA 90 bp AGAAGGAAAGGCCATGTCACTGGCAAAGAGATGGGAGAACCTGCAGCAAGTGCCGAAAAGATCCTGAGGTaGTTATCAATAAGCCTTTTT +
Preference number: 2 (lower is better)
Translates to: RRKGHVTGKEMGEPAASAEKILR*LSISLF
Trigger: AAAAAGGCTTATTGATAACCACCTCAGGATCTTTTC...GGCACTTGCTGCAGGTTCTCCCATCTCTTTGCCAGTGACATGGCCTTTCCTTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR-3UTR TCA 90 bp ACAGTGGTTCTCCCTGGCTCAAGAGAGATCAAAGAGATCAATCAGAATGGCATTAGAAACTGGGAACACTaGAGAAACTCTGCCTCCAAA +
Preference number: 2 (lower is better)
Translates to: TVVLPGSREIKEINQNGIRNWEH*RNSASK
Trigger: TTTGGAGGCAGAGTTTCTTCAGTGTTCCCAGTTTCT...AATGCCATTCTGATTGATCTCTTTGATCTCTCTTGAGCCAGGGAGAACCACTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR-3UTR TCA 90 bp TCCTCTGGAACTGGAGTTGAAGACAGTTTTGAGCTGCCATGTAGGTGTTGGGAACTTTGGATTTTTACTTaGTTGGTTGGTTGTTGGGGT +
Preference number: 2 (lower is better)
Translates to: SSGTGVEDSFELPCRCWELWIFT*LVGCWG
Trigger: ACCCCAACAACCAACCAATCAAGTAAAAATCCAAAG...TTCCCAACACCTACATGGCAGCTCAAAACTGTCTTCAACTCCAGTTCCAGAGGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR-3UTR GCA 90 bp CTTTCACAACGGCATGATTTTTGCTTTAAGTTTGTTGTTCTCTTGCTCCCCAACAGGTGTACACTACCATaGCCAACCTACCAGTTCTTC +
Preference number: 2 (lower is better)
Translates to: LSQRHDFCFKFVVLLLPNRCTLP*PTYQFF
Trigger: GAAGAACTGGTAGGTTGGGCATGGTAGTGTACACCT...GTTGGGGAGCAAGAGAACAACAAACTTAAAGCAAAAATCATGCCGTTGTGAAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000166236.9
3UTR-3UTR GCA 90 bp ACCATGCCCAACCTACCAGTTCTTCTTAATCTAAAATTTAAAGGTTGTAAACTGAGAACCTGCAGCAAGTaGCTCTTGCCTGAGGAAGTC +
Preference number: 2 (lower is better)
Translates to: TMPNLPVLLNLKFKGCKLRTCSK*LLPEEV
Trigger: GACTTCCTCAGGCAAGAGGCACTTGCTGCAGGTTCT...CAGTTTACAACCTTTAAATTTTAGATTAAGAAGAACTGGTAGGTTGGGCATGGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR-3UTR GCA 90 bp ACCATGCCCAACCTACCAGTTCTTCTTAATCTAAAATTTAAAGGTTGTAAACTGAGAGATGGGAGAACCTaGAGCAAGTGCCTCTTGCCT +
Preference number: 2 (lower is better)
Translates to: TMPNLPVLLNLKFKGCKLRDGRT*SKCLLP
Trigger: AGGCAAGAGGCACTTGCTGCAGGTTCTCCCATCTCT...CAGTTTACAACCTTTAAATTTTAGATTAAGAAGAACTGGTAGGTTGGGCATGGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR-3UTR GCA 90 bp GGTGGGGTAAAGATTTACCAGCCTTACCTTTTACAATTACTGTATTTCTATCTAAGAGATGGGAGAACCTaGAGCAAGTGCCTCTTGCCT +
Preference number: 2 (lower is better)
Translates to: GGVKIYQPYLLQLLYFYLRDGRT*SKCLLP
Trigger: AGGCAAGAGGCACTTGCTGCAGGTTCTCCCATCTCT...TAGATAGAAATACAGTAATTGTAAAAGGTAAGGCTGGTAAATCTTTACCCCACC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
3UTR-3UTR CCA 90 bp ACCATGCCCAACCTACCAGTTCTTCTTAATCTAAAATTTAAAGGTTGTAAACTGTGGGACTACAGAGTATaGAAAGGGGAGGTAGCAGGG +
Preference number: 2 (lower is better)
Translates to: TMPNLPVLLNLKFKGCKLWDYRV*KGEVAG
Trigger: CCCTGCTACCTCCCCTTTCCATACTCTGTAGTCCCA...CAGTTTACAACCTTTAAATTTTAGATTAAGAAGAACTGGTAGGTTGGGCATGGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR-3UTR GCA 90 bp ACCATGCCCAACCTACCAGTTCTTCTTAATCTAAAATTTAAAGGTTGTAAACTGCTGATGATCAGCATGTaGAAGGCTGGGCTGTCTTTG +
Preference number: 2 (lower is better)
Translates to: TMPNLPVLLNLKFKGCKLLMISM*KAGLSL
Trigger: CAAAGACAGCCCAGCCTTGCACATGCTGATCATCAG...CAGTTTACAACCTTTAAATTTTAGATTAAGAAGAACTGGTAGGTTGGGCATGGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR-3UTR CCA 90 bp ACCATGCCCAACCTACCAGTTCTTCTTAATCTAAAATTTAAAGGTTGTAAACTGGAAAGGCCATGTCACTaGCAAAGAGATGGGAGAACC +
Preference number: 2 (lower is better)
Translates to: TMPNLPVLLNLKFKGCKLERPCH*QRDGRT
Trigger: GGTTCTCCCATCTCTTTGCCAGTGACATGGCCTTTC...CAGTTTACAACCTTTAAATTTTAGATTAAGAAGAACTGGTAGGTTGGGCATGGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR-3UTR CCA 90 bp ACCATGCCCAACCTACCAGTTCTTCTTAATCTAAAATTTAAAGGTTGTAAACTGGACAGTGGTTCTCCCTaGCTCAAGAGAGATCAAAGA +
Preference number: 2 (lower is better)
Translates to: TMPNLPVLLNLKFKGCKLDSGSP*LKRDQR
Trigger: TCTTTGATCTCTCTTGAGCCAGGGAGAACCACTGTC...CAGTTTACAACCTTTAAATTTTAGATTAAGAAGAACTGGTAGGTTGGGCATGGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR-3UTR CCA 90 bp ACCATGCCCAACCTACCAGTTCTTCTTAATCTAAAATTTAAAGGTTGTAAACTGTGGTCAGCTGTACATTaGCTGACTAACCTGTCTGAC +
Preference number: 2 (lower is better)
Translates to: TMPNLPVLLNLKFKGCKLWSAVH*LTNLSD
Trigger: GTCAGACAGGTTAGTCAGCCAATGTACAGCTGACCA...CAGTTTACAACCTTTAAATTTTAGATTAAGAAGAACTGGTAGGTTGGGCATGGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR-3UTR CCA 90 bp CTTTCACAACGGCATGATTTTTGCTTTAAGTTTGTTGTTCTCTTGCTCCCCAACTCTACTGCATATCTGTaGATCAAGCATAAGCTCTCA +
Preference number: 2 (lower is better)
Translates to: LSQRHDFCFKFVVLLLPNSTAYL*IKHKLS
Trigger: TGAGAGCTTATGCTTGATCCACAGATATGCAGTAGA...GTTGGGGAGCAAGAGAACAACAAACTTAAAGCAAAAATCATGCCGTTGTGAAAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000166236.9
3UTR CAA 90 bp CTCTTTCTGCTAAACTACCTGCTGACCTTCCCAGAAATGTTCACTTaGTGTCTTAATATGTATGTGAAAGATGAAGGAAGTCGAAGAGAA +
Preference number: 2 (lower is better)
Translates to: LFLLNYLLTFPEMFT*CLNMYVKDEGSRRE
Trigger: TTCTCTTCGACTTCCTTCATCTTTCACATACATATTAAGACACAAAGTGAACATTTCTGGGAAGGTCAGCAGGTAGTTTAGCAGAAAGAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
3UTR-3UTR GCA 90 bp CTTTCACAACGGCATGATTTTTGCTTTAAGTTTGTTGTTCTCTTGCTCCCCAACATAGCTTATACTTCTTaGTCATTCATCAAGTTCCTC +
Preference number: 2 (lower is better)
Translates to: LSQRHDFCFKFVVLLLPNIAYTS*SFIKFL
Trigger: GAGGAACTTGATGAATGAGCAAGAAGTATAAGCTAT...GTTGGGGAGCAAGAGAACAACAAACTTAAAGCAAAAATCATGCCGTTGTGAAAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000166236.9
3UTR-3UTR CCA 90 bp GGTGGGGTAAAGATTTACCAGCCTTACCTTTTACAATTACTGTATTTCTATCTAAAGGTTGTAAACTGTTaGGACTACAGAGTATGGAAA +
Preference number: 2 (lower is better)
Translates to: GGVKIYQPYLLQLLYFYLKVVNC*DYRVWK
Trigger: TTTCCATACTCTGTAGTCCCAACAGTTTACAACCTT...TAGATAGAAATACAGTAATTGTAAAAGGTAAGGCTGGTAAATCTTTACCCCACC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
3UTR-3UTR CCA 90 bp ACCATGCCCAACCTACCAGTTCTTCTTAATCTAAAATTTAAAGGTTGTAAACTGGAAAAGATCCTGAGGTaGTTATCAATAAGCCTTTTT +
Preference number: 2 (lower is better)
Translates to: TMPNLPVLLNLKFKGCKLEKILR*LSISLF
Trigger: AAAAAGGCTTATTGATAACCACCTCAGGATCTTTTC...CAGTTTACAACCTTTAAATTTTAGATTAAGAAGAACTGGTAGGTTGGGCATGGT
34% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR CCA 72 bp GGTAGCAGGGAGCCTCAGAAGGAAAGGCCATGTCACTaGCAAAGAGATGGGAGAACCTGCAGCAAGTGCCTC +
Preference number: 3 (lower is better)
Translates to: GSREPQKERPCH*QRDGRTCSKCL
Trigger: GAGGCACTTGCTGCAGGTTCTCCCATCTCTTTGCCAGTGACATGGCCTTTCCTTCTGAGGCTCCCTGCTACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR-3UTR CAA 90 bp GAGGTAGCAGGGAGCCTCAGAAGGAAAGGCCATGTCACTGGCAAAGAGATGGGAAAGGCTGGGCTGTCTTaGCTGCTGCTCAAGCATCCT +
Preference number: 3 (lower is better)
Translates to: EVAGSLRRKGHVTGKEMGKAGLS*LLLKHP
Trigger: AGGATGCTTGAGCAGCAGCAAAGACAGCCCAGCCTT...TCCCATCTCTTTGCCAGTGACATGGCCTTTCCTTCTGAGGCTCCCTGCTACCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR-3UTR CAA 90 bp CAGGGAGCCTCAGAAGGAAAGGCCATGTCACTGGCAAAGAGATGGGAGAACCTGAAGGCTGGGCTGTCTTaGCTGCTGCTCAAGCATCCT +
Preference number: 3 (lower is better)
Translates to: QGASEGKAMSLAKRWENLKAGLS*LLLKHP
Trigger: AGGATGCTTGAGCAGCAGCAAAGACAGCCCAGCCTT...CAGGTTCTCCCATCTCTTTGCCAGTGACATGGCCTTTCCTTCTGAGGCTCCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR GCA 72 bp GGCAAAGAGATGGGAGAACCTGCAGCAAGTGCCTCTTaGCTGAGGAAGTCCCAAAGGCTAGGTTCCCACCAT +
Preference number: 3 (lower is better)
Translates to: GKEMGEPAASAS*LRKSQRLGSHH
Trigger: ATGGTGGGAACCTAGCCTTTGGGACTTCCTCAGGCAAGAGGCACTTGCTGCAGGTTCTCCCATCTCTTTGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR-3UTR CAA 90 bp AGAAGGAAAGGCCATGTCACTGGCAAAGAGATGGGAGAACCTGCAGCAAGTGCCAAGGCTGGGCTGTCTTaGCTGCTGCTCAAGCATCCT +
Preference number: 3 (lower is better)
Translates to: RRKGHVTGKEMGEPAASAKAGLS*LLLKHP
Trigger: AGGATGCTTGAGCAGCAGCAAAGACAGCCCAGCCTT...GGCACTTGCTGCAGGTTCTCCCATCTCTTTGCCAGTGACATGGCCTTTCCTTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR GCA 72 bp GGGAACACTGAAGAAACTCTGCCTCCAAAACCCAGCTaGACTGATGATCAGCATGTGCAAGGCTGGGCTGTC +
Preference number: 3 (lower is better)
Translates to: GNTEETLPPKPS*TDDQHVQGWAV
Trigger: GACAGCCCAGCCTTGCACATGCTGATCATCAGTGCAGCTGGGTTTTGGAGGCAGAGTTTCTTCAGTGTTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR GCA 72 bp TGTCACTGGCAAAGAGATGGGAGAACCTGCAGCAAGTaGCTCTTGCCTGAGGAAGTCCCAAAGGCTAGGTTC +
Preference number: 3 (lower is better)
Translates to: CHWQRDGRTCSK*LLPEEVPKARF
Trigger: GAACCTAGCCTTTGGGACTTCCTCAGGCAAGAGGCACTTGCTGCAGGTTCTCCCATCTCTTTGCCAGTGACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR CCA 72 bp AAACCCAGCTGCACTGATGATCAGCATGTGCAAGGCTaGGCTGTCTTTGCTGCTGCTCAAGCATCCTCCTCA +
Preference number: 3 (lower is better)
Translates to: KPSCTDDQHVQG*AVFAAAQASSS
Trigger: TGAGGAGGATGCTTGAGCAGCAGCAAAGACAGCCCAGCCTTGCACATGCTGATCATCAGTGCAGCTGGGTTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR CCA 72 bp TCAGCTGTACATTGGCTGACTAACCTGTCTGACAGGTaGCTCCAAACTAGGGACAGTGGTTCTCCCTGGCTC +
Preference number: 3 (lower is better)
Translates to: SAVHWLTNLSDR*LQTRDSGSPWL
Trigger: GAGCCAGGGAGAACCACTGTCCCTAGTTTGGAGCCACCTGTCAGACAGGTTAGTCAGCCAATGTACAGCTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR CCA 72 bp GTGTGTCTGGTTCCCATGGAAGCCAGAAGAGGGTGCTaGATCCCTTGGAACTTGAGTTACAGACAGCTGCAA +
Preference number: 3 (lower is better)
Translates to: VCLVPMEARRGC*IPWNLSYRQLQ
Trigger: TTGCAGCTGTCTGTAACTCAAGTTCCAAGGGATCCAGCACCCTCTTCTGGCTTCCATGGGAACCAGACACAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
3UTR-3UTR CAA 90 bp GAGGTAGCAGGGAGCCTCAGAAGGAAAGGCCATGTCACTGGCAAAGAGATGGGACCCAGATTGTTTGTTTaGTTTTTCCTGCCCTCCACC +
Preference number: 3 (lower is better)
Translates to: EVAGSLRRKGHVTGKEMGPRLFV*FFLPST
Trigger: GGTGGAGGGCAGGAAAAACAAAACAAACAATCTGGG...TCCCATCTCTTTGCCAGTGACATGGCCTTTCCTTCTGAGGCTCCCTGCTACCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR-3UTR CAA 90 bp AGAAGGAAAGGCCATGTCACTGGCAAAGAGATGGGAGAACCTGCAGCAAGTGCCCCCAGATTGTTTGTTTaGTTTTTCCTGCCCTCCACC +
Preference number: 3 (lower is better)
Translates to: RRKGHVTGKEMGEPAASAPRLFV*FFLPST
Trigger: GGTGGAGGGCAGGAAAAACAAAACAAACAATCTGGG...GGCACTTGCTGCAGGTTCTCCCATCTCTTTGCCAGTGACATGGCCTTTCCTTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR-3UTR CAA 90 bp CTCTGCCTCCAAAACCCAGCTGCACTGATGATCAGCATGTGCAAGGCTGGGCTGCTGGAGTGCTCAGTTTaGGAAACTTTGGTAGATTCT +
Preference number: 3 (lower is better)
Translates to: LCLQNPAALMISMCKAGLLECSV*ETLVDS
Trigger: AGAATCTACCAAAGTTTCCAAAACTGAGCACTCCAG...CAGCCCAGCCTTGCACATGCTGATCATCAGTGCAGCTGGGTTTTGGAGGCAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR-3UTR CAA 90 bp GCCCAGTCTCACTCTACTGCATATCTGTGGATCAAGCATAAGCTCTCAGCGCCACCTCTGGAACTGGAGTaGAAGACAGTTTTGAGCTGC +
Preference number: 3 (lower is better)
Translates to: AQSHSTAYLWIKHKLSAPPLELE*KTVLSC
Trigger: GCAGCTCAAAACTGTCTTCAACTCCAGTTCCAGAGG...TGGCGCTGAGAGCTTATGCTTGATCCACAGATATGCAGTAGAGTGAGACTGGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
3UTR GCA 72 bp AACTTGAGTTACAGACAGCTGCAACCACCATATGGGTaGTGGGAGTTGAACCTGGAGCATCTGAAAGGGCTC +
Preference number: 3 (lower is better)
Translates to: NLSYRQLQPPYG*WELNLEHLKGL
Trigger: GAGCCCTTTCAGATGCTCCAGGTTCAACTCCCAGCACCCATATGGTGGTTGCAGCTGTCTGTAACTCAAGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
3UTR CCA 72 bp TTGAGTTACAGACAGCTGCAACCACCATATGGGTGCTaGGAGTTGAACCTGGAGCATCTGAAAGGGCTCTCT +
Preference number: 3 (lower is better)
Translates to: LSYRQLQPPYGC*ELNLEHLKGLS
Trigger: AGAGAGCCCTTTCAGATGCTCCAGGTTCAACTCCCAGCACCCATATGGTGGTTGCAGCTGTCTGTAACTCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
3UTR TCA 72 bp TGCTTGCAGCTAGGTTTGGACATGGTATCTTCTGCCTaGCACAGAAGTGGATTGGGAGCAAGACTCCAGGTA +
Preference number: 3 (lower is better)
Translates to: CLQLGLDMVSSA*HRSGLGARLQV
Trigger: TACCTGGAGTCTTGCTCCCAATCCACTTCTGTGTCAGGCAGAAGATACCATGTCCAAACCTAGCTGCAAGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR GCA 72 bp CACACCAGGGAACAGGCTAGATCCTTTCCTAGTTTGTaGTTGCAGCTAGGTTTGGACATGGTATCTTCTGCC +
Preference number: 3 (lower is better)
Translates to: HTREQARSFPSL*LQLGLDMVSSA
Trigger: GGCAGAAGATACCATGTCCAAACCTAGCTGCAAGCACAAACTAGGAAAGGATCTAGCCTGTTCCCTGGTGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR CCA 72 bp GAGCTGCCATGTAGGTGTTGGGAATTGAACCCTGGTTaGGAATTAACCACTGAGCCATCTCTCCAACCCTTT +
Preference number: 3 (lower is better)
Translates to: ELPCRCWELNPG*ELTTEPSLQPF
Trigger: AAAGGGTTGGAGAGATGGCTCAGTGGTTAATTCCCAACCAGGGTTCAATTCCCAACACCTACATGGCAGCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR CCA 72 bp TTGGAACTTGAGTTACAGACAGCTGCAACCACCATATaGGTGCTGGGAGTTGAACCTGGAGCATCTGAAAGG +
Preference number: 3 (lower is better)
Translates to: LELELQTAATTI*VLGVEPGASER
Trigger: CCTTTCAGATGCTCCAGGTTCAACTCCCAGCACCCATATGGTGGTTGCAGCTGTCTGTAACTCAAGTTCCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
3UTR-3UTR CAA 90 bp GGGACAGTGGTTCTCCCTGGCTCAAGAGAGATCAAAGAGATCAATCAGAATGGCCCCAGATTGTTTGTTTaGTTTTTCCTGCCCTCCACC +
Preference number: 3 (lower is better)
Translates to: GTVVLPGSREIKEINQNGPRLFV*FFLPST
Trigger: GGTGGAGGGCAGGAAAAACAAAACAAACAATCTGGG...GCCATTCTGATTGATCTCTTTGATCTCTCTTGAGCCAGGGAGAACCACTGTCCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR GCA 72 bp AGGCTGATCTTGAACTCACAGAGATCATTCTGCCTCTaGCTCCCAAGTGCTGGGATTAAAGGTGTACACTAC +
Preference number: 3 (lower is better)
Translates to: RLILNSQRSFCL*LPSAGIKGVHY
Trigger: GTAGTGTACACCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGAATGATCTCTGTGAGTTCAAGATCAGCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR CCA 72 bp AGGTTTGGACATGGTATCTTCTGCCTGACACAGAAGTaGATTGGGAGCAAGACTCCAGGTAATGTGATGTGG +
Preference number: 3 (lower is better)
Translates to: RFGHGIFCLTQK*IGSKTPGNVMW
Trigger: CCACATCACATTACCTGGAGTCTTGCTCCCAATCCACTTCTGTGTCAGGCAGAAGATACCATGTCCAAACCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR CCA 72 bp GATCTATCTCTTTTACAAAGCCTTCTGGTGTCTTGGTaGAGACTTTTAAGCCACGCTGCCTCAGGACCGACT +
Preference number: 3 (lower is better)
Translates to: DLSLLQSLLVSW*RLLSHAASGPT
Trigger: AGTCGGTCCTGAGGCAGCGTGGCTTAAAAGTCTCCACCAAGACACCAGAAGGCTTTGTAAAAGAGATAGATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000166236.9
3UTR TCA 72 bp GTTAAGGACCCTGAGCACGCAAACCACGGTGCTATGTaGTCTATCTCTTTTACAAAGCCTTCTGGTGTCTTG +
Preference number: 3 (lower is better)
Translates to: VKDPEHANHGAM*SISFTKPSGVL
Trigger: CAAGACACCAGAAGGCTTTGTAAAAGAGATAGATCACATAGCACCGTGGTTTGCGTGCTCAGGGTCCTTAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166236.9
3UTR GCA 72 bp CTGTCTTTGCTGCTGCTCAAGCATCCTCCTCAGAACTaGAGTTACTATAACCAAAAACCAACTGCTGCGCTT +
Preference number: 3 (lower is better)
Translates to: LSLLLLKHPPQN*SYYNQKPTAAL
Trigger: AAGCGCAGCAGTTGGTTTTTGGTTATAGTAACTGCAGTTCTGAGGAGGATGCTTGAGCAGCAGCAAAGACAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR CCA 72 bp TGTGTAATGCAATGCTGTGGCTGTGTAGGTCTTTGTTaGGATCTGAATGAGAATGGCCCTCACAGGGTCATA +
Preference number: 3 (lower is better)
Translates to: CVMQCCGCVGLC*DLNENGPHRVI
Trigger: TATGACCCTGTGAGGGCCATTCTCATTCAGATCCCAACAAAGACCTACACAGCCACAGCATTGCATTACACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
3UTR-3UTR CAA 90 bp ACAGTGGTTCTCCCTGGCTCAAGAGAGATCAAAGAGATCAATCAGAATGGCATTCCCAGATTGTTTGTTTaGTTTTTCCTGCCCTCCACC +
Preference number: 3 (lower is better)
Translates to: TVVLPGSREIKEINQNGIPRLFV*FFLPST
Trigger: GGTGGAGGGCAGGAAAAACAAAACAAACAATCTGGG...AATGCCATTCTGATTGATCTCTTTGATCTCTCTTGAGCCAGGGAGAACCACTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR-3UTR CAA 90 bp TCCTCTGGAACTGGAGTTGAAGACAGTTTTGAGCTGCCATGTAGGTGTTGGGAACTGGAGTGCTCAGTTTaGGAAACTTTGGTAGATTCT +
Preference number: 3 (lower is better)
Translates to: SSGTGVEDSFELPCRCWELECSV*ETLVDS
Trigger: AGAATCTACCAAAGTTTCCAAAACTGAGCACTCCAG...TTCCCAACACCTACATGGCAGCTCAAAACTGTCTTCAACTCCAGTTCCAGAGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR GCA 72 bp CTGGGAGTTGAACCTGGAGCATCTGAAAGGGCTCTCTaGTCCTTTACCTTAATTTTTGAAACAGGTTCTCTC +
Preference number: 3 (lower is better)
Translates to: LGVEPGASERAL*SFTLIFETGSL
Trigger: GAGAGAACCTGTTTCAAAAATTAAGGTAAAGGAGCAGAGAGCCCTTTCAGATGCTCCAGGTTCAACTCCCAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
3UTR-3UTR CAA 90 bp TGTACAAAGCCTGTGTTTCCTGTAGTGTTCCCAAACTCCCCATCACAAACCACACTGGAGTGCTCAGTTTaGGAAACTTTGGTAGATTCT +
Preference number: 3 (lower is better)
Translates to: CTKPVFPVVFPNSPSQTTLECSV*ETLVDS
Trigger: AGAATCTACCAAAGTTTCCAAAACTGAGCACTCCAG...TGTGGTTTGTGATGGGGAGTTTGGGAACACTACAGGAAACACAGGCTTTGTACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
3UTR-3UTR CAA 90 bp TGTTTCAGAAACCCACACCAGGCCCAGTCTCACTCTACTGCATATCTGTGGATCTACTTGATTGGTTGGTaGTTGGGGTTGTTTTGTTTT +
Preference number: 3 (lower is better)
Translates to: CFRNPHQAQSHSTAYLWIYLIGW*LGLFCF
Trigger: AAAACAAAACAACCCCAACAACCAACCAATCAAGTA...GATCCACAGATATGCAGTAGAGTGAGACTGGGCCTGGTGTGGGTTTCTGAAACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
3UTR-3UTR CAA 90 bp TCCTCTGGAACTGGAGTTGAAGACAGTTTTGAGCTGCCATGTAGGTGTTGGGAACATCTCTCCAACCCTTaGGATTTTTACTTGATTGGT +
Preference number: 3 (lower is better)
Translates to: SSGTGVEDSFELPCRCWEHLSNP*DFYLIG
Trigger: ACCAATCAAGTAAAAATCCAAAGGGTTGGAGAGATG...TTCCCAACACCTACATGGCAGCTCAAAACTGTCTTCAACTCCAGTTCCAGAGGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR-3UTR CAA 90 bp GAAACCCACACCAGGCCCAGTCTCACTCTACTGCATATCTGTGGATCAAGCATATTTATTTCATGTGCATaGGTGTTTTGCCTGCTTGTA +
Preference number: 3 (lower is better)
Translates to: ETHTRPSLTLLHICGSSIFISCA*VFCLLV
Trigger: TACAAGCAGGCAAAACACCAATGCACATGAAATAAA...TATGCTTGATCCACAGATATGCAGTAGAGTGAGACTGGGCCTGGTGTGGGTTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
3UTR-3UTR CAA 90 bp TGTACAAAGCCTGTGTTTCCTGTAGTGTTCCCAAACTCCCCATCACAAACCACACATATATTTAAATGCTaGGTCTGCAGTGGGTGGACT +
Preference number: 3 (lower is better)
Translates to: CTKPVFPVVFPNSPSQTTHIFKC*VCSGWT
Trigger: AGTCCACCCACTGCAGACCAAGCATTTAAATATATG...TGTGGTTTGTGATGGGGAGTTTGGGAACACTACAGGAAACACAGGCTTTGTACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
3UTR CCA 72 bp AATTTAAAGGTTGTAAACTGTTGGGACTACAGAGTATaGAAAGGGGAGGTAGCAGGGAGCCTCAGAAGGAAA +
Preference number: 3 (lower is better)
Translates to: NLKVVNCWDYRV*KGEVAGSLRRK
Trigger: TTTCCTTCTGAGGCTCCCTGCTACCTCCCCTTTCCATACTCTGTAGTCCCAACAGTTTACAACCTTTAAATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR-3UTR CAA 90 bp ACAGTGGTTCTCCCTGGCTCAAGAGAGATCAAAGAGATCAATCAGAATGGCATTCTGGAGTGCTCAGTTTaGGAAACTTTGGTAGATTCT +
Preference number: 3 (lower is better)
Translates to: TVVLPGSREIKEINQNGILECSV*ETLVDS
Trigger: AGAATCTACCAAAGTTTCCAAAACTGAGCACTCCAG...AATGCCATTCTGATTGATCTCTTTGATCTCTCTTGAGCCAGGGAGAACCACTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR-3UTR CAA 90 bp GGTGGGGTAAAGATTTACCAGCCTTACCTTTTACAATTACTGTATTTCTATCTAAAGGCTGGGCTGTCTTaGCTGCTGCTCAAGCATCCT +
Preference number: 3 (lower is better)
Translates to: GGVKIYQPYLLQLLYFYLKAGLS*LLLKHP
Trigger: AGGATGCTTGAGCAGCAGCAAAGACAGCCCAGCCTT...TAGATAGAAATACAGTAATTGTAAAAGGTAAGGCTGGTAAATCTTTACCCCACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
3UTR-3UTR CAA 90 bp TCTCACTCTACTGCATATCTGTGGATCAAGCATAAGCTCTCAGCGCCATCCTTGTACTTGATTGGTTGGTaGTTGGGGTTGTTTTGTTTT +
Preference number: 3 (lower is better)
Translates to: SHSTAYLWIKHKLSAPSLYLIGW*LGLFCF
Trigger: AAAACAAAACAACCCCAACAACCAACCAATCAAGTA...CAAGGATGGCGCTGAGAGCTTATGCTTGATCCACAGATATGCAGTAGAGTGAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
3UTR-3UTR CAA 90 bp GGTGGGGTAAAGATTTACCAGCCTTACCTTTTACAATTACTGTATTTCTATCTACCCAGATTGTTTGTTTaGTTTTTCCTGCCCTCCACC +
Preference number: 3 (lower is better)
Translates to: GGVKIYQPYLLQLLYFYLPRLFV*FFLPST
Trigger: GGTGGAGGGCAGGAAAAACAAAACAAACAATCTGGG...TAGATAGAAATACAGTAATTGTAAAAGGTAAGGCTGGTAAATCTTTACCCCACC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
3UTR GCA 72 bp CTACAAAATCAAATTAGCATTCAAGAGCAAACAAAATaGCACCTGTGTAGTGCTGTGGCTCATAGGCATATG +
Preference number: 3 (lower is better)
Translates to: LQNQISIQEQTK*HLCSAVAHRHM
Trigger: CATATGCCTATGAGCCACAGCACTACACAGGTGGCATTTTGTTTGCTCTTGAATGCTAATTTGATTTTGTAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
3UTR CCA 72 bp CTTTGTCCTTGTAACATTTTGCCAGCAAAACACACTTaGACAACCAGATCCTTCTACAGCAAATCTTTATTG +
Preference number: 3 (lower is better)
Translates to: LCPCNILPAKHT*TTRSFYSKSLL
Trigger: CAATAAAGATTTGCTGTAGAAGGATCTGGTTGTCCAAGTGTGTTTTGCTGGCAAAATGTTACAAGGACAAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000166236.9
3UTR CCA 72 bp ATTCTCTGTCATAGGGTCCTTTATGTAAGTAATTCTTaGCAAGCATATAGATTAAGCAAGTACATTGAAGGT +
Preference number: 3 (lower is better)
Translates to: ILCHRVLYVSNS*QAYRLSKYIEG
Trigger: ACCTTCAATGTACTTGCTTAATCTATATGCTTGCCAAGAATTACTTACATAAAGGACCCTATGACAGAGAAT
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
CDS-3UTR TCA 90 bp CAGGGAGCCTCAGAAGGAAAGGCCATGTCACTGGCAAAGAGATGGGAGAACCTGGTCTGGAACATCCATTaGCCAGCAGCAGCAATGGCC +
Preference number: 4 (lower is better)
Translates to: QGASEGKAMSLAKRWENLVWNIH*PAAAMA
Trigger: GGCCATTGCTGCTGCTGGTCAATGGATGTTCCAGAC...CAGGTTCTCCCATCTCTTTGCCAGTGACATGGCCTTTCCTTCTGAGGCTCCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR TCA 90 bp GAGGTAGCAGGGAGCCTCAGAAGGAAAGGCCATGTCACTGGCAAAGAGATGGGAGTCTGGAACATCCATTaGCCAGCAGCAGCAATGGCC +
Preference number: 4 (lower is better)
Translates to: EVAGSLRRKGHVTGKEMGVWNIH*PAAAMA
Trigger: GGCCATTGCTGCTGCTGGTCAATGGATGTTCCAGAC...TCCCATCTCTTTGCCAGTGACATGGCCTTTCCTTCTGAGGCTCCCTGCTACCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR TCA 90 bp CAGGGAGCCTCAGAAGGAAAGGCCATGTCACTGGCAAAGAGATGGGAGAACCTGTTCTGCCTCCAGACCTaGGCCTTCATGGCCTGTACA +
Preference number: 4 (lower is better)
Translates to: QGASEGKAMSLAKRWENLFCLQT*AFMACT
Trigger: TGTACAGGCCATGAAGGCTCAGGTCTGGAGGCAGAA...CAGGTTCTCCCATCTCTTTGCCAGTGACATGGCCTTTCCTTCTGAGGCTCCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR TCA 90 bp GCAACCACCATATGGGTGCTGGGAGTTGAACCTGGAGCATCTGAAAGGGCTCTCTTCTGCCTCCAGACCTaGGCCTTCATGGCCTGTACA +
Preference number: 4 (lower is better)
Translates to: ATTIWVLGVEPGASERALFCLQT*AFMACT
Trigger: TGTACAGGCCATGAAGGCTCAGGTCTGGAGGCAGAA...GAGAGCCCTTTCAGATGCTCCAGGTTCAACTCCCAGCACCCATATGGTGGTTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
CDS-3UTR TCA 90 bp CAGGGAGCCTCAGAAGGAAAGGCCATGTCACTGGCAAAGAGATGGGAGAACCTGCTCTCTCCTTGTGAATaGAACCCACTGGGCCTGGCT +
Preference number: 4 (lower is better)
Translates to: QGASEGKAMSLAKRWENLLSPCE*NPLGLA
Trigger: AGCCAGGCCCAGTGGGTTTCATTCACAAGGAGAGAG...CAGGTTCTCCCATCTCTTTGCCAGTGACATGGCCTTTCCTTCTGAGGCTCCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR GCA 90 bp CTCTGCCTCCAAAACCCAGCTGCACTGATGATCAGCATGTGCAAGGCTGGGCTGGGTGCAGAGCACAGCTaGCATCACCCAGATGGTAAT +
Preference number: 4 (lower is better)
Translates to: LCLQNPAALMISMCKAGLGAEHS*HHPDGN
Trigger: ATTACCATCTGGGTGATGGCAGCTGTGCTCTGCACC...CAGCCCAGCCTTGCACATGCTGATCATCAGTGCAGCTGGGTTTTGGAGGCAGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR CCA 90 bp CTCTGCCTCCAAAACCCAGCTGCACTGATGATCAGCATGTGCAAGGCTGGGCTGGTGAATGAAACCCACTaGGCCTGGCTAATGCATCCC +
Preference number: 4 (lower is better)
Translates to: LCLQNPAALMISMCKAGLVNETH*AWLMHP
Trigger: GGGATGCATTAGCCAGGCCCAGTGGGTTTCATTCAC...CAGCCCAGCCTTGCACATGCTGATCATCAGTGCAGCTGGGTTTTGGAGGCAGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR CAA 72 bp TGGCAAAGAGATGGGAGAACCTGCAGCAAGTGCCTCTaGCCTGAGGAAGTCCCAAAGGCTAGGTTCCCACCA +
Preference number: 4 (lower is better)
Translates to: WQRDGRTCSKCL*PEEVPKARFPP
Trigger: TGGTGGGAACCTAGCCTTTGGGACTTCCTCAGGCAAGAGGCACTTGCTGCAGGTTCTCCCATCTCTTTGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR TCA 90 bp GAGGTAGCAGGGAGCCTCAGAAGGAAAGGCCATGTCACTGGCAAAGAGATGGGACCAAGGTGCCCACAATaGACACAAGCCAGTACAGAG +
Preference number: 4 (lower is better)
Translates to: EVAGSLRRKGHVTGKEMGPRCPQ*TQASTE
Trigger: CTCTGTACTGGCTTGTGTTCATTGTGGGCACCTTGG...TCCCATCTCTTTGCCAGTGACATGGCCTTTCCTTCTGAGGCTCCCTGCTACCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR TCA 90 bp AGAAGGAAAGGCCATGTCACTGGCAAAGAGATGGGAGAACCTGCAGCAAGTGCCGTCTGGAACATCCATTaGCCAGCAGCAGCAATGGCC +
Preference number: 4 (lower is better)
Translates to: RRKGHVTGKEMGEPAASAVWNIH*PAAAMA
Trigger: GGCCATTGCTGCTGCTGGTCAATGGATGTTCCAGAC...GGCACTTGCTGCAGGTTCTCCCATCTCTTTGCCAGTGACATGGCCTTTCCTTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR TCA 90 bp CTCTGCCTCCAAAACCCAGCTGCACTGATGATCAGCATGTGCAAGGCTGGGCTGGATTCCCCACTGACTTaGCTGTACAGGATTTCTGGG +
Preference number: 4 (lower is better)
Translates to: LCLQNPAALMISMCKAGLDSPLT*LYRISG
Trigger: CCCAGAAATCCTGTACAGTCAAGTCAGTGGGGAATC...CAGCCCAGCCTTGCACATGCTGATCATCAGTGCAGCTGGGTTTTGGAGGCAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR TCA 90 bp CAGGGAGCCTCAGAAGGAAAGGCCATGTCACTGGCAAAGAGATGGGAGAACCTGGGCCTTGTGCTTGGATaGCTTCTTGGCCTGTACCAA +
Preference number: 4 (lower is better)
Translates to: QGASEGKAMSLAKRWENLGLVLG*LLGLYQ
Trigger: TTGGTACAGGCCAAGAAGTCATCCAAGCACAAGGCC...CAGGTTCTCCCATCTCTTTGCCAGTGACATGGCCTTTCCTTCTGAGGCTCCCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR TCA 90 bp GCAACCACCATATGGGTGCTGGGAGTTGAACCTGGAGCATCTGAAAGGGCTCTCGGCCTTGTGCTTGGATaGCTTCTTGGCCTGTACCAA +
Preference number: 4 (lower is better)
Translates to: ATTIWVLGVEPGASERALGLVLG*LLGLYQ
Trigger: TTGGTACAGGCCAAGAAGTCATCCAAGCACAAGGCC...GAGAGCCCTTTCAGATGCTCCAGGTTCAACTCCCAGCACCCATATGGTGGTTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
CDS-3UTR GCA 90 bp GAGGTAGCAGGGAGCCTCAGAAGGAAAGGCCATGTCACTGGCAAAGAGATGGGAGGTGCAGAGCACAGCTaGCATCACCCAGATGGTAAT +
Preference number: 4 (lower is better)
Translates to: EVAGSLRRKGHVTGKEMGGAEHS*HHPDGN
Trigger: ATTACCATCTGGGTGATGGCAGCTGTGCTCTGCACC...TCCCATCTCTTTGCCAGTGACATGGCCTTTCCTTCTGAGGCTCCCTGCTACCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR GCA 90 bp GAGGTAGCAGGGAGCCTCAGAAGGAAAGGCCATGTCACTGGCAAAGAGATGGGAACAGGATTTCTGGGGTaGAGAGCACAGCTGCCATCA +
Preference number: 4 (lower is better)
Translates to: EVAGSLRRKGHVTGKEMGTGFLG*RAQLPS
Trigger: TGATGGCAGCTGTGCTCTGCACCCCAGAAATCCTGT...TCCCATCTCTTTGCCAGTGACATGGCCTTTCCTTCTGAGGCTCCCTGCTACCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR GCA 90 bp CAGGGAGCCTCAGAAGGAAAGGCCATGTCACTGGCAAAGAGATGGGAGAACCTGACAGGATTTCTGGGGTaGAGAGCACAGCTGCCATCA +
Preference number: 4 (lower is better)
Translates to: QGASEGKAMSLAKRWENLTGFLG*RAQLPS
Trigger: TGATGGCAGCTGTGCTCTGCACCCCAGAAATCCTGT...CAGGTTCTCCCATCTCTTTGCCAGTGACATGGCCTTTCCTTCTGAGGCTCCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR GCA 90 bp GAGGTAGCAGGGAGCCTCAGAAGGAAAGGCCATGTCACTGGCAAAGAGATGGGAACCTTGAGGGCCTTGTaGTTGGATGACTTCTTGGCC +
Preference number: 4 (lower is better)
Translates to: EVAGSLRRKGHVTGKEMGTLRAL*LDDFLA
Trigger: GGCCAAGAAGTCATCCAAGCACAAGGCCCTCAAGGT...TCCCATCTCTTTGCCAGTGACATGGCCTTTCCTTCTGAGGCTCCCTGCTACCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR CCA 90 bp GAGGTAGCAGGGAGCCTCAGAAGGAAAGGCCATGTCACTGGCAAAGAGATGGGAACTGTACAGGATTTCTaGGGTGCAGAGCACAGCTGC +
Preference number: 4 (lower is better)
Translates to: EVAGSLRRKGHVTGKEMGTVQDF*GAEHSC
Trigger: GCAGCTGTGCTCTGCACCCCAGAAATCCTGTACAGT...TCCCATCTCTTTGCCAGTGACATGGCCTTTCCTTCTGAGGCTCCCTGCTACCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR CCA 90 bp GAGGTAGCAGGGAGCCTCAGAAGGAAAGGCCATGTCACTGGCAAAGAGATGGGAGTGAATGAAACCCACTaGGCCTGGCTAATGCATCCC +
Preference number: 4 (lower is better)
Translates to: EVAGSLRRKGHVTGKEMGVNETH*AWLMHP
Trigger: GGGATGCATTAGCCAGGCCCAGTGGGTTTCATTCAC...TCCCATCTCTTTGCCAGTGACATGGCCTTTCCTTCTGAGGCTCCCTGCTACCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR CAA 72 bp GCACTGATGATCAGCATGTGCAAGGCTGGGCTGTCTTaGCTGCTGCTCAAGCATCCTCCTCAGAACTGCAGT +
Preference number: 4 (lower is better)
Translates to: ALMISMCKAGLS*LLLKHPPQNCS
Trigger: ACTGCAGTTCTGAGGAGGATGCTTGAGCAGCAGCAAAGACAGCCCAGCCTTGCACATGCTGATCATCAGTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR CAA 72 bp TACAGACAGCTGCAACCACCATATGGGTGCTGGGAGTaGAACCTGGAGCATCTGAAAGGGCTCTCTGCTCCT +
Preference number: 4 (lower is better)
Translates to: YRQLQPPYGCWE*NLEHLKGLSAP
Trigger: AGGAGCAGAGAGCCCTTTCAGATGCTCCAGGTTCAACTCCCAGCACCCATATGGTGGTTGCAGCTGTCTGTA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
CDS-3UTR TCA 90 bp GAGGTAGCAGGGAGCCTCAGAAGGAAAGGCCATGTCACTGGCAAAGAGATGGGAGATTCCCCACTGACTTaGCTGTACAGGATTTCTGGG +
Preference number: 4 (lower is better)
Translates to: EVAGSLRRKGHVTGKEMGDSPLT*LYRISG
Trigger: CCCAGAAATCCTGTACAGTCAAGTCAGTGGGGAATC...TCCCATCTCTTTGCCAGTGACATGGCCTTTCCTTCTGAGGCTCCCTGCTACCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR TCA 90 bp CAGGGAGCCTCAGAAGGAAAGGCCATGTCACTGGCAAAGAGATGGGAGAACCTGGATTCCCCACTGACTTaGCTGTACAGGATTTCTGGG +
Preference number: 4 (lower is better)
Translates to: QGASEGKAMSLAKRWENLDSPLT*LYRISG
Trigger: CCCAGAAATCCTGTACAGTCAAGTCAGTGGGGAATC...CAGGTTCTCCCATCTCTTTGCCAGTGACATGGCCTTTCCTTCTGAGGCTCCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR TCA 90 bp GAGGTAGCAGGGAGCCTCAGAAGGAAAGGCCATGTCACTGGCAAAGAGATGGGAGGAAAAACCCCAAGGTaGCCTTCAGGATCAAGACAG +
Preference number: 4 (lower is better)
Translates to: EVAGSLRRKGHVTGKEMGGKTPR*PSGSRQ
Trigger: CTGTCTTGATCCTGAAGGTCACCTTGGGGTTTTTCC...TCCCATCTCTTTGCCAGTGACATGGCCTTTCCTTCTGAGGCTCCCTGCTACCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR TCA 90 bp TATGGGTGCTGGGAGTTGAACCTGGAGCATCTGAAAGGGCTCTCTGCTCCTTTACTCTCTCCTTGTGAATaGAACCCACTGGGCCTGGCT +
Preference number: 4 (lower is better)
Translates to: YGCWELNLEHLKGLSAPLLSPCE*NPLGLA
Trigger: AGCCAGGCCCAGTGGGTTTCATTCACAAGGAGAGAG...TAAAGGAGCAGAGAGCCCTTTCAGATGCTCCAGGTTCAACTCCCAGCACCCATA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
CDS-3UTR TCA 90 bp AGAAGGAAAGGCCATGTCACTGGCAAAGAGATGGGAGAACCTGCAGCAAGTGCCTACCCTCTCTCCTTGTaGATGAAACCCACTGGGCCT +
Preference number: 4 (lower is better)
Translates to: RRKGHVTGKEMGEPAASAYPLSL*MKPTGP
Trigger: AGGCCCAGTGGGTTTCATTCACAAGGAGAGAGGGTA...GGCACTTGCTGCAGGTTCTCCCATCTCTTTGCCAGTGACATGGCCTTTCCTTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR GCA 90 bp AGAAGGAAAGGCCATGTCACTGGCAAAGAGATGGGAGAACCTGCAGCAAGTGCCACCTTGAGGGCCTTGTaGTTGGATGACTTCTTGGCC +
Preference number: 4 (lower is better)
Translates to: RRKGHVTGKEMGEPAASATLRAL*LDDFLA
Trigger: GGCCAAGAAGTCATCCAAGCACAAGGCCCTCAAGGT...GGCACTTGCTGCAGGTTCTCCCATCTCTTTGCCAGTGACATGGCCTTTCCTTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR CCA 90 bp AGAAGGAAAGGCCATGTCACTGGCAAAGAGATGGGAGAACCTGCAGCAAGTGCCACTGTACAGGATTTCTaGGGTGCAGAGCACAGCTGC +
Preference number: 4 (lower is better)
Translates to: RRKGHVTGKEMGEPAASATVQDF*GAEHSC
Trigger: GCAGCTGTGCTCTGCACCCCAGAAATCCTGTACAGT...GGCACTTGCTGCAGGTTCTCCCATCTCTTTGCCAGTGACATGGCCTTTCCTTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR CCA 90 bp CTCTGCCTCCAAAACCCAGCTGCACTGATGATCAGCATGTGCAAGGCTGGGCTGCCTGCACTACAAGAATaGAGTTGTAGGGGAACTGAG +
Preference number: 4 (lower is better)
Translates to: LCLQNPAALMISMCKAGLPALQE*SCRGTE
Trigger: CTCAGTTCCCCTACAACTCCATTCTTGTAGTGCAGG...CAGCCCAGCCTTGCACATGCTGATCATCAGTGCAGCTGGGTTTTGGAGGCAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR TCA 90 bp GGGACAGTGGTTCTCCCTGGCTCAAGAGAGATCAAAGAGATCAATCAGAATGGCGTCTGGAACATCCATTaGCCAGCAGCAGCAATGGCC +
Preference number: 4 (lower is better)
Translates to: GTVVLPGSREIKEINQNGVWNIH*PAAAMA
Trigger: GGCCATTGCTGCTGCTGGTCAATGGATGTTCCAGAC...GCCATTCTGATTGATCTCTTTGATCTCTCTTGAGCCAGGGAGAACCACTGTCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR TCA 90 bp GGGACAGTGGTTCTCCCTGGCTCAAGAGAGATCAAAGAGATCAATCAGAATGGCTTCTGCCTCCAGACCTaGGCCTTCATGGCCTGTACA +
Preference number: 4 (lower is better)
Translates to: GTVVLPGSREIKEINQNGFCLQT*AFMACT
Trigger: TGTACAGGCCATGAAGGCTCAGGTCTGGAGGCAGAA...GCCATTCTGATTGATCTCTTTGATCTCTCTTGAGCCAGGGAGAACCACTGTCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR TCA 90 bp AGAAGGAAAGGCCATGTCACTGGCAAAGAGATGGGAGAACCTGCAGCAAGTGCCGGAAAAACCCCAAGGTaGCCTTCAGGATCAAGACAG +
Preference number: 4 (lower is better)
Translates to: RRKGHVTGKEMGEPAASAGKTPR*PSGSRQ
Trigger: CTGTCTTGATCCTGAAGGTCACCTTGGGGTTTTTCC...GGCACTTGCTGCAGGTTCTCCCATCTCTTTGCCAGTGACATGGCCTTTCCTTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR TCA 90 bp GGGACAGTGGTTCTCCCTGGCTCAAGAGAGATCAAAGAGATCAATCAGAATGGCCTCTCTCCTTGTGAATaGAACCCACTGGGCCTGGCT +
Preference number: 4 (lower is better)
Translates to: GTVVLPGSREIKEINQNGLSPCE*NPLGLA
Trigger: AGCCAGGCCCAGTGGGTTTCATTCACAAGGAGAGAG...GCCATTCTGATTGATCTCTTTGATCTCTCTTGAGCCAGGGAGAACCACTGTCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR TCA 90 bp CAGGGAGCCTCAGAAGGAAAGGCCATGTCACTGGCAAAGAGATGGGAGAACCTGCAGTGGAGTCATAGCTaGAGTCATCAAACATGCCAG +
Preference number: 4 (lower is better)
Translates to: QGASEGKAMSLAKRWENLQWSHS*SHQTCQ
Trigger: CTGGCATGTTTGATGACTTCAGCTATGACTCCACTG...CAGGTTCTCCCATCTCTTTGCCAGTGACATGGCCTTTCCTTCTGAGGCTCCCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR TCA 90 bp GCAACCACCATATGGGTGCTGGGAGTTGAACCTGGAGCATCTGAAAGGGCTCTCCAGTGGAGTCATAGCTaGAGTCATCAAACATGCCAG +
Preference number: 4 (lower is better)
Translates to: ATTIWVLGVEPGASERALQWSHS*SHQTCQ
Trigger: CTGGCATGTTTGATGACTTCAGCTATGACTCCACTG...GAGAGCCCTTTCAGATGCTCCAGGTTCAACTCCCAGCACCCATATGGTGGTTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
CDS-3UTR CCA 90 bp CTCTGCCTCCAAAACCCAGCTGCACTGATGATCAGCATGTGCAAGGCTGGGCTGTCATGTAGTCATCTGTaGAAGCAGTGGAGTCATAGC +
Preference number: 4 (lower is better)
Translates to: LCLQNPAALMISMCKAGLSCSHL*KQWSHS
Trigger: GCTATGACTCCACTGCTTCCACAGATGACTACATGA...CAGCCCAGCCTTGCACATGCTGATCATCAGTGCAGCTGGGTTTTGGAGGCAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR CCA 90 bp CTCTGCCTCCAAAACCCAGCTGCACTGATGATCAGCATGTGCAAGGCTGGGCTGAGAGGTGGAAGAAAATaGCTTGCAAACTGCCTGACA +
Preference number: 4 (lower is better)
Translates to: LCLQNPAALMISMCKAGLRGGRK*LANCLT
Trigger: TGTCAGGCAGTTTGCAAGCCATTTTCTTCCACCTCT...CAGCCCAGCCTTGCACATGCTGATCATCAGTGCAGCTGGGTTTTGGAGGCAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR CCA 90 bp GAGGTAGCAGGGAGCCTCAGAAGGAAAGGCCATGTCACTGGCAAAGAGATGGGACCTGCACTACAAGAATaGAGTTGTAGGGGAACTGAG +
Preference number: 4 (lower is better)
Translates to: EVAGSLRRKGHVTGKEMGPALQE*SCRGTE
Trigger: CTCAGTTCCCCTACAACTCCATTCTTGTAGTGCAGG...TCCCATCTCTTTGCCAGTGACATGGCCTTTCCTTCTGAGGCTCCCTGCTACCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR CCA 90 bp TATGGGTGCTGGGAGTTGAACCTGGAGCATCTGAAAGGGCTCTCTGCTCCTTTAGTGAATGAAACCCACTaGGCCTGGCTAATGCATCCC +
Preference number: 4 (lower is better)
Translates to: YGCWELNLEHLKGLSAPLVNETH*AWLMHP
Trigger: GGGATGCATTAGCCAGGCCCAGTGGGTTTCATTCAC...TAAAGGAGCAGAGAGCCCTTTCAGATGCTCCAGGTTCAACTCCCAGCACCCATA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
CDS-3UTR TCA 90 bp CCAACTGCTGCGCTTCTGGAGTGCTCAGTTTTGGAAACTTTGGTAGATTCTGACGTCTGGAACATCCATTaGCCAGCAGCAGCAATGGCC +
Preference number: 4 (lower is better)
Translates to: PTAALLECSVLETLVDSDVWNIH*PAAAMA
Trigger: GGCCATTGCTGCTGCTGGTCAATGGATGTTCCAGAC...GTCAGAATCTACCAAAGTTTCCAAAACTGAGCACTCCAGAAGCGCAGCAGTTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR TCA 90 bp CCAACTGCTGCGCTTCTGGAGTGCTCAGTTTTGGAAACTTTGGTAGATTCTGACTTCTGCCTCCAGACCTaGGCCTTCATGGCCTGTACA +
Preference number: 4 (lower is better)
Translates to: PTAALLECSVLETLVDSDFCLQT*AFMACT
Trigger: TGTACAGGCCATGAAGGCTCAGGTCTGGAGGCAGAA...GTCAGAATCTACCAAAGTTTCCAAAACTGAGCACTCCAGAAGCGCAGCAGTTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR TCA 90 bp GCCCAGTCTCACTCTACTGCATATCTGTGGATCAAGCATAAGCTCTCAGCGCCAGATTCCCCACTGACTTaGCTGTACAGGATTTCTGGG +
Preference number: 4 (lower is better)
Translates to: AQSHSTAYLWIKHKLSAPDSPLT*LYRISG
Trigger: CCCAGAAATCCTGTACAGTCAAGTCAGTGGGGAATC...TGGCGCTGAGAGCTTATGCTTGATCCACAGATATGCAGTAGAGTGAGACTGGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
CDS-3UTR TCA 90 bp TCTCACTCTACTGCATATCTGTGGATCAAGCATAAGCTCTCAGCGCCATCCTTGCTCTCTCCTTGTGAATaGAACCCACTGGGCCTGGCT +
Preference number: 4 (lower is better)
Translates to: SHSTAYLWIKHKLSAPSLLSPCE*NPLGLA
Trigger: AGCCAGGCCCAGTGGGTTTCATTCACAAGGAGAGAG...CAAGGATGGCGCTGAGAGCTTATGCTTGATCCACAGATATGCAGTAGAGTGAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
CDS-3UTR TCA 90 bp GGGACAGTGGTTCTCCCTGGCTCAAGAGAGATCAAAGAGATCAATCAGAATGGCTACCCTCTCTCCTTGTaGATGAAACCCACTGGGCCT +
Preference number: 4 (lower is better)
Translates to: GTVVLPGSREIKEINQNGYPLSL*MKPTGP
Trigger: AGGCCCAGTGGGTTTCATTCACAAGGAGAGAGGGTA...GCCATTCTGATTGATCTCTTTGATCTCTCTTGAGCCAGGGAGAACCACTGTCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR TCA 90 bp TGTTTCAGAAACCCACACCAGGCCCAGTCTCACTCTACTGCATATCTGTGGATCTACCCTCTCTCCTTGTaGATGAAACCCACTGGGCCT +
Preference number: 4 (lower is better)
Translates to: CFRNPHQAQSHSTAYLWIYPLSL*MKPTGP
Trigger: AGGCCCAGTGGGTTTCATTCACAAGGAGAGAGGGTA...GATCCACAGATATGCAGTAGAGTGAGACTGGGCCTGGTGTGGGTTTCTGAAACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
CDS-3UTR TCA 90 bp AGAAGGAAAGGCCATGTCACTGGCAAAGAGATGGGAGAACCTGCAGCAAGTGCCCAGTGGAGTCATAGCTaGAGTCATCAAACATGCCAG +
Preference number: 4 (lower is better)
Translates to: RRKGHVTGKEMGEPAASAQWSHS*SHQTCQ
Trigger: CTGGCATGTTTGATGACTTCAGCTATGACTCCACTG...GGCACTTGCTGCAGGTTCTCCCATCTCTTTGCCAGTGACATGGCCTTTCCTTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR GCA 90 bp CTCTGCCTCCAAAACCCAGCTGCACTGATGATCAGCATGTGCAAGGCTGGGCTGTGGTCTTCACTCTTGTaGAATACCAGTAGACAAGGA +
Preference number: 4 (lower is better)
Translates to: LCLQNPAALMISMCKAGLWSSLL*NTSRQG
Trigger: TCCTTGTCTACTGGTATTGCACAAGAGTGAAGACCA...CAGCCCAGCCTTGCACATGCTGATCATCAGTGCAGCTGGGTTTTGGAGGCAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR GCA 90 bp TGTTTCAGAAACCCACACCAGGCCCAGTCTCACTCTACTGCATATCTGTGGATCACCTTGAGGGCCTTGTaGTTGGATGACTTCTTGGCC +
Preference number: 4 (lower is better)
Translates to: CFRNPHQAQSHSTAYLWITLRAL*LDDFLA
Trigger: GGCCAAGAAGTCATCCAAGCACAAGGCCCTCAAGGT...GATCCACAGATATGCAGTAGAGTGAGACTGGGCCTGGTGTGGGTTTCTGAAACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
CDS-3UTR CCA 90 bp CAGGGAGCCTCAGAAGGAAAGGCCATGTCACTGGCAAAGAGATGGGAGAACCTGAGAGGTGGAAGAAAATaGCTTGCAAACTGCCTGACA +
Preference number: 4 (lower is better)
Translates to: QGASEGKAMSLAKRWENLRGGRK*LANCLT
Trigger: TGTCAGGCAGTTTGCAAGCCATTTTCTTCCACCTCT...CAGGTTCTCCCATCTCTTTGCCAGTGACATGGCCTTTCCTTCTGAGGCTCCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR CCA 90 bp CTCTGCCTCCAAAACCCAGCTGCACTGATGATCAGCATGTGCAAGGCTGGGCTGGGAACATGTCAGTCATaGTCTTCACTCTTGTGCAAT +
Preference number: 4 (lower is better)
Translates to: LCLQNPAALMISMCKAGLGTCQS*SSLLCN
Trigger: ATTGCACAAGAGTGAAGACCATGACTGACATGTTCC...CAGCCCAGCCTTGCACATGCTGATCATCAGTGCAGCTGGGTTTTGGAGGCAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR CCA 90 bp GGGACAGTGGTTCTCCCTGGCTCAAGAGAGATCAAAGAGATCAATCAGAATGGCACTGTACAGGATTTCTaGGGTGCAGAGCACAGCTGC +
Preference number: 4 (lower is better)
Translates to: GTVVLPGSREIKEINQNGTVQDF*GAEHSC
Trigger: GCAGCTGTGCTCTGCACCCCAGAAATCCTGTACAGT...GCCATTCTGATTGATCTCTTTGATCTCTCTTGAGCCAGGGAGAACCACTGTCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR CCA 90 bp GAAACCCACACCAGGCCCAGTCTCACTCTACTGCATATCTGTGGATCAAGCATAACTGTACAGGATTTCTaGGGTGCAGAGCACAGCTGC +
Preference number: 4 (lower is better)
Translates to: ETHTRPSLTLLHICGSSITVQDF*GAEHSC
Trigger: GCAGCTGTGCTCTGCACCCCAGAAATCCTGTACAGT...TATGCTTGATCCACAGATATGCAGTAGAGTGAGACTGGGCCTGGTGTGGGTTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
CDS-3UTR CCA 90 bp GGGACAGTGGTTCTCCCTGGCTCAAGAGAGATCAAAGAGATCAATCAGAATGGCGTGAATGAAACCCACTaGGCCTGGCTAATGCATCCC +
Preference number: 4 (lower is better)
Translates to: GTVVLPGSREIKEINQNGVNETH*AWLMHP
Trigger: GGGATGCATTAGCCAGGCCCAGTGGGTTTCATTCAC...GCCATTCTGATTGATCTCTTTGATCTCTCTTGAGCCAGGGAGAACCACTGTCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR TCA 90 bp CCAACTGCTGCGCTTCTGGAGTGCTCAGTTTTGGAAACTTTGGTAGATTCTGACCCAAGGTGCCCACAATaGACACAAGCCAGTACAGAG +
Preference number: 4 (lower is better)
Translates to: PTAALLECSVLETLVDSDPRCPQ*TQASTE
Trigger: CTCTGTACTGGCTTGTGTTCATTGTGGGCACCTTGG...GTCAGAATCTACCAAAGTTTCCAAAACTGAGCACTCCAGAAGCGCAGCAGTTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR TCA 90 bp GGGACAGTGGTTCTCCCTGGCTCAAGAGAGATCAAAGAGATCAATCAGAATGGCGGAAAAACCCCAAGGTaGCCTTCAGGATCAAGACAG +
Preference number: 4 (lower is better)
Translates to: GTVVLPGSREIKEINQNGGKTPR*PSGSRQ
Trigger: CTGTCTTGATCCTGAAGGTCACCTTGGGGTTTTTCC...GCCATTCTGATTGATCTCTTTGATCTCTCTTGAGCCAGGGAGAACCACTGTCCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR TCA 90 bp CCAACTGCTGCGCTTCTGGAGTGCTCAGTTTTGGAAACTTTGGTAGATTCTGACGGCCTTGTGCTTGGATaGCTTCTTGGCCTGTACCAA +
Preference number: 4 (lower is better)
Translates to: PTAALLECSVLETLVDSDGLVLG*LLGLYQ
Trigger: TTGGTACAGGCCAAGAAGTCATCCAAGCACAAGGCC...GTCAGAATCTACCAAAGTTTCCAAAACTGAGCACTCCAGAAGCGCAGCAGTTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR TCA 90 bp CCAACTGCTGCGCTTCTGGAGTGCTCAGTTTTGGAAACTTTGGTAGATTCTGACTACCCTCTCTCCTTGTaGATGAAACCCACTGGGCCT +
Preference number: 4 (lower is better)
Translates to: PTAALLECSVLETLVDSDYPLSL*MKPTGP
Trigger: AGGCCCAGTGGGTTTCATTCACAAGGAGAGAGGGTA...GTCAGAATCTACCAAAGTTTCCAAAACTGAGCACTCCAGAAGCGCAGCAGTTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR GCA 90 bp CAGGGAGCCTCAGAAGGAAAGGCCATGTCACTGGCAAAGAGATGGGAGAACCTGTGGTCTTCACTCTTGTaGAATACCAGTAGACAAGGA +
Preference number: 4 (lower is better)
Translates to: QGASEGKAMSLAKRWENLWSSLL*NTSRQG
Trigger: TCCTTGTCTACTGGTATTGCACAAGAGTGAAGACCA...CAGGTTCTCCCATCTCTTTGCCAGTGACATGGCCTTTCCTTCTGAGGCTCCCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR GCA 90 bp TCCTCTGGAACTGGAGTTGAAGACAGTTTTGAGCTGCCATGTAGGTGTTGGGAAGGTGCAGAGCACAGCTaGCATCACCCAGATGGTAAT +
Preference number: 4 (lower is better)
Translates to: SSGTGVEDSFELPCRCWEGAEHS*HHPDGN
Trigger: ATTACCATCTGGGTGATGGCAGCTGTGCTCTGCACC...TTCCCAACACCTACATGGCAGCTCAAAACTGTCTTCAACTCCAGTTCCAGAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR GCA 90 bp CCAACTGCTGCGCTTCTGGAGTGCTCAGTTTTGGAAACTTTGGTAGATTCTGACACCTTGAGGGCCTTGTaGTTGGATGACTTCTTGGCC +
Preference number: 4 (lower is better)
Translates to: PTAALLECSVLETLVDSDTLRAL*LDDFLA
Trigger: GGCCAAGAAGTCATCCAAGCACAAGGCCCTCAAGGT...GTCAGAATCTACCAAAGTTTCCAAAACTGAGCACTCCAGAAGCGCAGCAGTTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR GCA 90 bp TCCTCTGGAACTGGAGTTGAAGACAGTTTTGAGCTGCCATGTAGGTGTTGGGAAACCTTGAGGGCCTTGTaGTTGGATGACTTCTTGGCC +
Preference number: 4 (lower is better)
Translates to: SSGTGVEDSFELPCRCWETLRAL*LDDFLA
Trigger: GGCCAAGAAGTCATCCAAGCACAAGGCCCTCAAGGT...TTCCCAACACCTACATGGCAGCTCAAAACTGTCTTCAACTCCAGTTCCAGAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR CCA 90 bp CAGGGAGCCTCAGAAGGAAAGGCCATGTCACTGGCAAAGAGATGGGAGAACCTGGGAACATGTCAGTCATaGTCTTCACTCTTGTGCAAT +
Preference number: 4 (lower is better)
Translates to: QGASEGKAMSLAKRWENLGTCQS*SSLLCN
Trigger: ATTGCACAAGAGTGAAGACCATGACTGACATGTTCC...CAGGTTCTCCCATCTCTTTGCCAGTGACATGGCCTTTCCTTCTGAGGCTCCCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR CCA 90 bp TCTCACTCTACTGCATATCTGTGGATCAAGCATAAGCTCTCAGCGCCATCCTTGACTGTACAGGATTTCTaGGGTGCAGAGCACAGCTGC +
Preference number: 4 (lower is better)
Translates to: SHSTAYLWIKHKLSAPSLTVQDF*GAEHSC
Trigger: GCAGCTGTGCTCTGCACCCCAGAAATCCTGTACAGT...CAAGGATGGCGCTGAGAGCTTATGCTTGATCCACAGATATGCAGTAGAGTGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
CDS-3UTR TCA 90 bp GAGGTAGCAGGGAGCCTCAGAAGGAAAGGCCATGTCACTGGCAAAGAGATGGGAGGCTTGCAAACTGCCTaGCATTATTTTTCTTACAGA +
Preference number: 4 (lower is better)
Translates to: EVAGSLRRKGHVTGKEMGGLQTA*HYFSYR
Trigger: TCTGTAAGAAAAATAATGTCAGGCAGTTTGCAAGCC...TCCCATCTCTTTGCCAGTGACATGGCCTTTCCTTCTGAGGCTCCCTGCTACCTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR TCA 90 bp CAGGGAGCCTCAGAAGGAAAGGCCATGTCACTGGCAAAGAGATGGGAGAACCTGGGCTTGCAAACTGCCTaGCATTATTTTTCTTACAGA +
Preference number: 4 (lower is better)
Translates to: QGASEGKAMSLAKRWENLGLQTA*HYFSYR
Trigger: TCTGTAAGAAAAATAATGTCAGGCAGTTTGCAAGCC...CAGGTTCTCCCATCTCTTTGCCAGTGACATGGCCTTTCCTTCTGAGGCTCCCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR TCA 90 bp TCCTCTGGAACTGGAGTTGAAGACAGTTTTGAGCTGCCATGTAGGTGTTGGGAAGATTCCCCACTGACTTaGCTGTACAGGATTTCTGGG +
Preference number: 4 (lower is better)
Translates to: SSGTGVEDSFELPCRCWEDSPLT*LYRISG
Trigger: CCCAGAAATCCTGTACAGTCAAGTCAGTGGGGAATC...TTCCCAACACCTACATGGCAGCTCAAAACTGTCTTCAACTCCAGTTCCAGAGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR TCA 90 bp TCCTCTGGAACTGGAGTTGAAGACAGTTTTGAGCTGCCATGTAGGTGTTGGGAAGGAAAAACCCCAAGGTaGCCTTCAGGATCAAGACAG +
Preference number: 4 (lower is better)
Translates to: SSGTGVEDSFELPCRCWEGKTPR*PSGSRQ
Trigger: CTGTCTTGATCCTGAAGGTCACCTTGGGGTTTTTCC...TTCCCAACACCTACATGGCAGCTCAAAACTGTCTTCAACTCCAGTTCCAGAGGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR TCA 90 bp CCAACTGCTGCGCTTCTGGAGTGCTCAGTTTTGGAAACTTTGGTAGATTCTGACGGAAAAACCCCAAGGTaGCCTTCAGGATCAAGACAG +
Preference number: 4 (lower is better)
Translates to: PTAALLECSVLETLVDSDGKTPR*PSGSRQ
Trigger: CTGTCTTGATCCTGAAGGTCACCTTGGGGTTTTTCC...GTCAGAATCTACCAAAGTTTCCAAAACTGAGCACTCCAGAAGCGCAGCAGTTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR TCA 90 bp AGAACTGCAGTTACTATAACCAAAAACCAACTGCTGCGCTTCTGGAGTGCTCAGGGCCTTGTGCTTGGATaGCTTCTTGGCCTGTACCAA +
Preference number: 4 (lower is better)
Translates to: RTAVTITKNQLLRFWSAQGLVLG*LLGLYQ
Trigger: TTGGTACAGGCCAAGAAGTCATCCAAGCACAAGGCC...CTGAGCACTCCAGAAGCGCAGCAGTTGGTTTTTGGTTATAGTAACTGCAGTTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR TCA 90 bp TGTACAAAGCCTGTGTTTCCTGTAGTGTTCCCAAACTCCCCATCACAAACCACATACCCTCTCTCCTTGTaGATGAAACCCACTGGGCCT +
Preference number: 4 (lower is better)
Translates to: CTKPVFPVVFPNSPSQTTYPLSL*MKPTGP
Trigger: AGGCCCAGTGGGTTTCATTCACAAGGAGAGAGGGTA...TGTGGTTTGTGATGGGGAGTTTGGGAACACTACAGGAAACACAGGCTTTGTACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
CDS-3UTR GCA 90 bp AGAACTGCAGTTACTATAACCAAAAACCAACTGCTGCGCTTCTGGAGTGCTCAGACAGGATTTCTGGGGTaGAGAGCACAGCTGCCATCA +
Preference number: 4 (lower is better)
Translates to: RTAVTITKNQLLRFWSAQTGFLG*RAQLPS
Trigger: TGATGGCAGCTGTGCTCTGCACCCCAGAAATCCTGT...CTGAGCACTCCAGAAGCGCAGCAGTTGGTTTTTGGTTATAGTAACTGCAGTTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR GCA 90 bp GAGGTAGCAGGGAGCCTCAGAAGGAAAGGCCATGTCACTGGCAAAGAGATGGGAACAACTGTGGAAGAATaGAATAGTCTGAGTAACCTG +
Preference number: 4 (lower is better)
Translates to: EVAGSLRRKGHVTGKEMGTTVEE*NSLSNL
Trigger: CAGGTTACTCAGACTATTGCATTCTTCCACAGTTGT...TCCCATCTCTTTGCCAGTGACATGGCCTTTCCTTCTGAGGCTCCCTGCTACCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR TCA 90 bp AGAAGGAAAGGCCATGTCACTGGCAAAGAGATGGGAGAACCTGCAGCAAGTGCCGGCTTGCAAACTGCCTaGCATTATTTTTCTTACAGA +
Preference number: 4 (lower is better)
Translates to: RRKGHVTGKEMGEPAASAGLQTA*HYFSYR
Trigger: TCTGTAAGAAAAATAATGTCAGGCAGTTTGCAAGCC...GGCACTTGCTGCAGGTTCTCCCATCTCTTTGCCAGTGACATGGCCTTTCCTTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR GCA 90 bp AGAAGGAAAGGCCATGTCACTGGCAAAGAGATGGGAGAACCTGCAGCAAGTGCCAGTTCATCTTGTACATaGTGTTCACAACCTTGCACA +
Preference number: 4 (lower is better)
Translates to: RRKGHVTGKEMGEPAASASSSCT*CSQPCT
Trigger: TGTGCAAGGTTGTGAACAGCATGTACAAGATGAACT...GGCACTTGCTGCAGGTTCTCCCATCTCTTTGCCAGTGACATGGCCTTTCCTTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR GCA 90 bp ACAGTGGTTCTCCCTGGCTCAAGAGAGATCAAAGAGATCAATCAGAATGGCATTGGTGCAGAGCACAGCTaGCATCACCCAGATGGTAAT +
Preference number: 4 (lower is better)
Translates to: TVVLPGSREIKEINQNGIGAEHS*HHPDGN
Trigger: ATTACCATCTGGGTGATGGCAGCTGTGCTCTGCACC...AATGCCATTCTGATTGATCTCTTTGATCTCTCTTGAGCCAGGGAGAACCACTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR CCA 90 bp GGGACAGTGGTTCTCCCTGGCTCAAGAGAGATCAAAGAGATCAATCAGAATGGCTCATGGCCTGTACAATaGCAATGTATCTGTCCACAC +
Preference number: 4 (lower is better)
Translates to: GTVVLPGSREIKEINQNGSWPVQ*QCICPH
Trigger: GTGTGGACAGATACATTGCCATTGTACAGGCCATGA...GCCATTCTGATTGATCTCTTTGATCTCTCTTGAGCCAGGGAGAACCACTGTCCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR CCA 90 bp GAAACCCACACCAGGCCCAGTCTCACTCTACTGCATATCTGTGGATCAAGCATATCATGGCCTGTACAATaGCAATGTATCTGTCCACAC +
Preference number: 4 (lower is better)
Translates to: ETHTRPSLTLLHICGSSISWPVQ*QCICPH
Trigger: GTGTGGACAGATACATTGCCATTGTACAGGCCATGA...TATGCTTGATCCACAGATATGCAGTAGAGTGAGACTGGGCCTGGTGTGGGTTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
CDS-3UTR CCA 90 bp CCAACTGCTGCGCTTCTGGAGTGCTCAGTTTTGGAAACTTTGGTAGATTCTGACCCTGCACTACAAGAATaGAGTTGTAGGGGAACTGAG +
Preference number: 4 (lower is better)
Translates to: PTAALLECSVLETLVDSDPALQE*SCRGTE
Trigger: CTCAGTTCCCCTACAACTCCATTCTTGTAGTGCAGG...GTCAGAATCTACCAAAGTTTCCAAAACTGAGCACTCCAGAAGCGCAGCAGTTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR CCA 90 bp TCCTCTGGAACTGGAGTTGAAGACAGTTTTGAGCTGCCATGTAGGTGTTGGGAACCTGCACTACAAGAATaGAGTTGTAGGGGAACTGAG +
Preference number: 4 (lower is better)
Translates to: SSGTGVEDSFELPCRCWEPALQE*SCRGTE
Trigger: CTCAGTTCCCCTACAACTCCATTCTTGTAGTGCAGG...TTCCCAACACCTACATGGCAGCTCAAAACTGTCTTCAACTCCAGTTCCAGAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR CCA 90 bp TCTTTATTGCTTACTTCTCAGGAAGACCCCGAACCCAGAAAATGGTGCTGCTTAGTGAATGAAACCCACTaGGCCTGGCTAATGCATCCC +
Preference number: 4 (lower is better)
Translates to: SLLLTSQEDPEPRKWCCLVNETH*AWLMHP
Trigger: GGGATGCATTAGCCAGGCCCAGTGGGTTTCATTCAC...TAAGCAGCACCATTTTCTGGGTTCGGGGTCTTCCTGAGAAGTAAGCAATAAAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000166236.9
CDS-3UTR TCA 90 bp TCCTCTGGAACTGGAGTTGAAGACAGTTTTGAGCTGCCATGTAGGTGTTGGGAATCACAACCTTGCACATaGAGGTCTGGAACATCCATT +
Preference number: 4 (lower is better)
Translates to: SSGTGVEDSFELPCRCWESQPCT*RSGTSI
Trigger: AATGGATGTTCCAGACCTTCATGTGCAAGGTTGTGA...TTCCCAACACCTACATGGCAGCTCAAAACTGTCTTCAACTCCAGTTCCAGAGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR TCA 90 bp CCAACTGCTGCGCTTCTGGAGTGCTCAGTTTTGGAAACTTTGGTAGATTCTGACTCACAACCTTGCACATaGAGGTCTGGAACATCCATT +
Preference number: 4 (lower is better)
Translates to: PTAALLECSVLETLVDSDSQPCT*RSGTSI
Trigger: AATGGATGTTCCAGACCTTCATGTGCAAGGTTGTGA...GTCAGAATCTACCAAAGTTTCCAAAACTGAGCACTCCAGAAGCGCAGCAGTTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR TCA 90 bp AGAACTGCAGTTACTATAACCAAAAACCAACTGCTGCGCTTCTGGAGTGCTCAGCAGTGGAGTCATAGCTaGAGTCATCAAACATGCCAG +
Preference number: 4 (lower is better)
Translates to: RTAVTITKNQLLRFWSAQQWSHS*SHQTCQ
Trigger: CTGGCATGTTTGATGACTTCAGCTATGACTCCACTG...CTGAGCACTCCAGAAGCGCAGCAGTTGGTTTTTGGTTATAGTAACTGCAGTTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR GCA 90 bp GCCCAGTCTCACTCTACTGCATATCTGTGGATCAAGCATAAGCTCTCAGCGCCAACAACTGTGGAAGAATaGAATAGTCTGAGTAACCTG +
Preference number: 4 (lower is better)
Translates to: AQSHSTAYLWIKHKLSAPTTVEE*NSLSNL
Trigger: CAGGTTACTCAGACTATTGCATTCTTCCACAGTTGT...TGGCGCTGAGAGCTTATGCTTGATCCACAGATATGCAGTAGAGTGAGACTGGGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
CDS-3UTR CCA 90 bp CCAACTGCTGCGCTTCTGGAGTGCTCAGTTTTGGAAACTTTGGTAGATTCTGACTCATGTAGTCATCTGTaGAAGCAGTGGAGTCATAGC +
Preference number: 4 (lower is better)
Translates to: PTAALLECSVLETLVDSDSCSHL*KQWSHS
Trigger: GCTATGACTCCACTGCTTCCACAGATGACTACATGA...GTCAGAATCTACCAAAGTTTCCAAAACTGAGCACTCCAGAAGCGCAGCAGTTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR CCA 90 bp TCTCACTCTACTGCATATCTGTGGATCAAGCATAAGCTCTCAGCGCCATCCTTGTCATGTAGTCATCTGTaGAAGCAGTGGAGTCATAGC +
Preference number: 4 (lower is better)
Translates to: SHSTAYLWIKHKLSAPSLSCSHL*KQWSHS
Trigger: GCTATGACTCCACTGCTTCCACAGATGACTACATGA...CAAGGATGGCGCTGAGAGCTTATGCTTGATCCACAGATATGCAGTAGAGTGAGA
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
CDS-3UTR CCA 90 bp TCCTCTGGAACTGGAGTTGAAGACAGTTTTGAGCTGCCATGTAGGTGTTGGGAATCATGTAGTCATCTGTaGAAGCAGTGGAGTCATAGC +
Preference number: 4 (lower is better)
Translates to: SSGTGVEDSFELPCRCWESCSHL*KQWSHS
Trigger: GCTATGACTCCACTGCTTCCACAGATGACTACATGA...TTCCCAACACCTACATGGCAGCTCAAAACTGTCTTCAACTCCAGTTCCAGAGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR CCA 90 bp CCAACTGCTGCGCTTCTGGAGTGCTCAGTTTTGGAAACTTTGGTAGATTCTGACTCATGGCCTGTACAATaGCAATGTATCTGTCCACAC +
Preference number: 4 (lower is better)
Translates to: PTAALLECSVLETLVDSDSWPVQ*QCICPH
Trigger: GTGTGGACAGATACATTGCCATTGTACAGGCCATGA...GTCAGAATCTACCAAAGTTTCCAAAACTGAGCACTCCAGAAGCGCAGCAGTTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR CCA 90 bp TGTACAAAGCCTGTGTTTCCTGTAGTGTTCCCAAACTCCCCATCACAAACCACACCTGCACTACAAGAATaGAGTTGTAGGGGAACTGAG +
Preference number: 4 (lower is better)
Translates to: CTKPVFPVVFPNSPSQTTPALQE*SCRGTE
Trigger: CTCAGTTCCCCTACAACTCCATTCTTGTAGTGCAGG...TGTGGTTTGTGATGGGGAGTTTGGGAACACTACAGGAAACACAGGCTTTGTACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
3UTR CAA 72 bp TCCCGGGTTTTGGCACCACTTTGTCCTTGTAACATTTaGCCAGCAAAACACACTTGGACAACCAGATCCTTC +
Preference number: 4 (lower is better)
Translates to: SRVLAPLCPCNI*PAKHTWTTRSF
Trigger: GAAGGATCTGGTTGTCCAAGTGTGTTTTGCTGGCAAAATGTTACAAGGACAAAGTGGTGCCAAAACCCGGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000166236.9
CDS-3UTR TCA 90 bp AGAACTGCAGTTACTATAACCAAAAACCAACTGCTGCGCTTCTGGAGTGCTCAGTCACAACCTTGCACATaGAGGTCTGGAACATCCATT +
Preference number: 4 (lower is better)
Translates to: RTAVTITKNQLLRFWSAQSQPCT*RSGTSI
Trigger: AATGGATGTTCCAGACCTTCATGTGCAAGGTTGTGA...CTGAGCACTCCAGAAGCGCAGCAGTTGGTTTTTGGTTATAGTAACTGCAGTTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR GCA 90 bp TCCTCTGGAACTGGAGTTGAAGACAGTTTTGAGCTGCCATGTAGGTGTTGGGAATGGTCTTCACTCTTGTaGAATACCAGTAGACAAGGA +
Preference number: 4 (lower is better)
Translates to: SSGTGVEDSFELPCRCWEWSSLL*NTSRQG
Trigger: TCCTTGTCTACTGGTATTGCACAAGAGTGAAGACCA...TTCCCAACACCTACATGGCAGCTCAAAACTGTCTTCAACTCCAGTTCCAGAGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR GCA 90 bp TGTTTCAGAAACCCACACCAGGCCCAGTCTCACTCTACTGCATATCTGTGGATCAGTTCATCTTGTACATaGTGTTCACAACCTTGCACA +
Preference number: 4 (lower is better)
Translates to: CFRNPHQAQSHSTAYLWISSSCT*CSQPCT
Trigger: TGTGCAAGGTTGTGAACAGCATGTACAAGATGAACT...GATCCACAGATATGCAGTAGAGTGAGACTGGGCCTGGTGTGGGTTTCTGAAACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
CDS-3UTR GCA 90 bp CTTTCACAACGGCATGATTTTTGCTTTAAGTTTGTTGTTCTCTTGCTCCCCAACACAGGATTTCTGGGGTaGAGAGCACAGCTGCCATCA +
Preference number: 4 (lower is better)
Translates to: LSQRHDFCFKFVVLLLPNTGFLG*RAQLPS
Trigger: TGATGGCAGCTGTGCTCTGCACCCCAGAAATCCTGT...GTTGGGGAGCAAGAGAACAACAAACTTAAAGCAAAAATCATGCCGTTGTGAAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000166236.9
CDS-3UTR GCA 90 bp TGTTTCAGAAACCCACACCAGGCCCAGTCTCACTCTACTGCATATCTGTGGATCACAACTGTGGAAGAATaGAATAGTCTGAGTAACCTG +
Preference number: 4 (lower is better)
Translates to: CFRNPHQAQSHSTAYLWITTVEE*NSLSNL
Trigger: CAGGTTACTCAGACTATTGCATTCTTCCACAGTTGT...GATCCACAGATATGCAGTAGAGTGAGACTGGGCCTGGTGTGGGTTTCTGAAACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
CDS-3UTR CCA 90 bp CCAACTGCTGCGCTTCTGGAGTGCTCAGTTTTGGAAACTTTGGTAGATTCTGACGGAACATGTCAGTCATaGTCTTCACTCTTGTGCAAT +
Preference number: 4 (lower is better)
Translates to: PTAALLECSVLETLVDSDGTCQS*SSLLCN
Trigger: ATTGCACAAGAGTGAAGACCATGACTGACATGTTCC...GTCAGAATCTACCAAAGTTTCCAAAACTGAGCACTCCAGAAGCGCAGCAGTTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR CCA 90 bp TCCTCTGGAACTGGAGTTGAAGACAGTTTTGAGCTGCCATGTAGGTGTTGGGAAGGAACATGTCAGTCATaGTCTTCACTCTTGTGCAAT +
Preference number: 4 (lower is better)
Translates to: SSGTGVEDSFELPCRCWEGTCQS*SSLLCN
Trigger: ATTGCACAAGAGTGAAGACCATGACTGACATGTTCC...TTCCCAACACCTACATGGCAGCTCAAAACTGTCTTCAACTCCAGTTCCAGAGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR TCA 90 bp CCAACTGCTGCGCTTCTGGAGTGCTCAGTTTTGGAAACTTTGGTAGATTCTGACGGCTTGCAAACTGCCTaGCATTATTTTTCTTACAGA +
Preference number: 4 (lower is better)
Translates to: PTAALLECSVLETLVDSDGLQTA*HYFSYR
Trigger: TCTGTAAGAAAAATAATGTCAGGCAGTTTGCAAGCC...GTCAGAATCTACCAAAGTTTCCAAAACTGAGCACTCCAGAAGCGCAGCAGTTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR TCA 90 bp ACAGTGGTTCTCCCTGGCTCAAGAGAGATCAAAGAGATCAATCAGAATGGCATTTCACAACCTTGCACATaGAGGTCTGGAACATCCATT +
Preference number: 4 (lower is better)
Translates to: TVVLPGSREIKEINQNGISQPCT*RSGTSI
Trigger: AATGGATGTTCCAGACCTTCATGTGCAAGGTTGTGA...AATGCCATTCTGATTGATCTCTTTGATCTCTCTTGAGCCAGGGAGAACCACTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR GCA 90 bp TCCTCTGGAACTGGAGTTGAAGACAGTTTTGAGCTGCCATGTAGGTGTTGGGAAAGTTCATCTTGTACATaGTGTTCACAACCTTGCACA +
Preference number: 4 (lower is better)
Translates to: SSGTGVEDSFELPCRCWESSSCT*CSQPCT
Trigger: TGTGCAAGGTTGTGAACAGCATGTACAAGATGAACT...TTCCCAACACCTACATGGCAGCTCAAAACTGTCTTCAACTCCAGTTCCAGAGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR GCA 90 bp CCAACTGCTGCGCTTCTGGAGTGCTCAGTTTTGGAAACTTTGGTAGATTCTGACACAACTGTGGAAGAATaGAATAGTCTGAGTAACCTG +
Preference number: 4 (lower is better)
Translates to: PTAALLECSVLETLVDSDTTVEE*NSLSNL
Trigger: CAGGTTACTCAGACTATTGCATTCTTCCACAGTTGT...GTCAGAATCTACCAAAGTTTCCAAAACTGAGCACTCCAGAAGCGCAGCAGTTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
3UTR CAA 72 bp GATTCAGATGTCTCTGACCTTATACTGACCTTGGTTTaGGAAGCCGTGCTTGTCATATTTGGGGCTCACTTA +
Preference number: 4 (lower is better)
Translates to: DSDVSDLILTLV*EAVLVIFGAHL
Trigger: TAAGTGAGCCCCAAATATGACAAGCACGGCTTCCAAAACCAAGGTCAGTATAAGGTCAGAGACATCTGAATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
3UTR CAA 72 bp GTCAATGATTCAGATGTCTCTGACCTTATACTGACCTaGGTTTTGGAAGCCGTGCTTGTCATATTTGGGGCT +
Preference number: 4 (lower is better)
Translates to: VNDSDVSDLILT*VLEAVLVIFGA
Trigger: AGCCCCAAATATGACAAGCACGGCTTCCAAAACCAAGGTCAGTATAAGGTCAGAGACATCTGAATCATTGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
CDS-3UTR TCA 90 bp TGTACAAAGCCTGTGTTTCCTGTAGTGTTCCCAAACTCCCCATCACAAACCACAGGCTTGCAAACTGCCTaGCATTATTTTTCTTACAGA +
Preference number: 4 (lower is better)
Translates to: CTKPVFPVVFPNSPSQTTGLQTA*HYFSYR
Trigger: TCTGTAAGAAAAATAATGTCAGGCAGTTTGCAAGCC...TGTGGTTTGTGATGGGGAGTTTGGGAACACTACAGGAAACACAGGCTTTGTACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
CDS-3UTR TCA 90 bp ACCATGCCCAACCTACCAGTTCTTCTTAATCTAAAATTTAAAGGTTGTAAACTGTTCTGCCTCCAGACCTaGGCCTTCATGGCCTGTACA +
Preference number: 4 (lower is better)
Translates to: TMPNLPVLLNLKFKGCKLFCLQT*AFMACT
Trigger: TGTACAGGCCATGAAGGCTCAGGTCTGGAGGCAGAA...CAGTTTACAACCTTTAAATTTTAGATTAAGAAGAACTGGTAGGTTGGGCATGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR GCA 90 bp AGAACTGCAGTTACTATAACCAAAAACCAACTGCTGCGCTTCTGGAGTGCTCAGAGTTCATCTTGTACATaGTGTTCACAACCTTGCACA +
Preference number: 4 (lower is better)
Translates to: RTAVTITKNQLLRFWSAQSSSCT*CSQPCT
Trigger: TGTGCAAGGTTGTGAACAGCATGTACAAGATGAACT...CTGAGCACTCCAGAAGCGCAGCAGTTGGTTTTTGGTTATAGTAACTGCAGTTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR TCA 90 bp ACCATGCCCAACCTACCAGTTCTTCTTAATCTAAAATTTAAAGGTTGTAAACTGCCAAGGTGCCCACAATaGACACAAGCCAGTACAGAG +
Preference number: 4 (lower is better)
Translates to: TMPNLPVLLNLKFKGCKLPRCPQ*TQASTE
Trigger: CTCTGTACTGGCTTGTGTTCATTGTGGGCACCTTGG...CAGTTTACAACCTTTAAATTTTAGATTAAGAAGAACTGGTAGGTTGGGCATGGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR TCA 90 bp ACCATGCCCAACCTACCAGTTCTTCTTAATCTAAAATTTAAAGGTTGTAAACTGGGCCTTGTGCTTGGATaGCTTCTTGGCCTGTACCAA +
Preference number: 4 (lower is better)
Translates to: TMPNLPVLLNLKFKGCKLGLVLG*LLGLYQ
Trigger: TTGGTACAGGCCAAGAAGTCATCCAAGCACAAGGCC...CAGTTTACAACCTTTAAATTTTAGATTAAGAAGAACTGGTAGGTTGGGCATGGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR GCA 90 bp GGTGGGGTAAAGATTTACCAGCCTTACCTTTTACAATTACTGTATTTCTATCTAACAGGATTTCTGGGGTaGAGAGCACAGCTGCCATCA +
Preference number: 4 (lower is better)
Translates to: GGVKIYQPYLLQLLYFYLTGFLG*RAQLPS
Trigger: TGATGGCAGCTGTGCTCTGCACCCCAGAAATCCTGT...TAGATAGAAATACAGTAATTGTAAAAGGTAAGGCTGGTAAATCTTTACCCCACC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
CDS-3UTR CCA 90 bp CTTTCACAACGGCATGATTTTTGCTTTAAGTTTGTTGTTCTCTTGCTCCCCAACTCATGGCCTGTACAATaGCAATGTATCTGTCCACAC +
Preference number: 4 (lower is better)
Translates to: LSQRHDFCFKFVVLLLPNSWPVQ*QCICPH
Trigger: GTGTGGACAGATACATTGCCATTGTACAGGCCATGA...GTTGGGGAGCAAGAGAACAACAAACTTAAAGCAAAAATCATGCCGTTGTGAAAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000166236.9
CDS-3UTR TCA 90 bp ACCATGCCCAACCTACCAGTTCTTCTTAATCTAAAATTTAAAGGTTGTAAACTGTCACAACCTTGCACATaGAGGTCTGGAACATCCATT +
Preference number: 4 (lower is better)
Translates to: TMPNLPVLLNLKFKGCKLSQPCT*RSGTSI
Trigger: AATGGATGTTCCAGACCTTCATGTGCAAGGTTGTGA...CAGTTTACAACCTTTAAATTTTAGATTAAGAAGAACTGGTAGGTTGGGCATGGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR CCA 90 bp ACCATGCCCAACCTACCAGTTCTTCTTAATCTAAAATTTAAAGGTTGTAAACTGTCATGTAGTCATCTGTaGAAGCAGTGGAGTCATAGC +
Preference number: 4 (lower is better)
Translates to: TMPNLPVLLNLKFKGCKLSCSHL*KQWSHS
Trigger: GCTATGACTCCACTGCTTCCACAGATGACTACATGA...CAGTTTACAACCTTTAAATTTTAGATTAAGAAGAACTGGTAGGTTGGGCATGGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR CCA 90 bp ACCATGCCCAACCTACCAGTTCTTCTTAATCTAAAATTTAAAGGTTGTAAACTGAGAGGTGGAAGAAAATaGCTTGCAAACTGCCTGACA +
Preference number: 4 (lower is better)
Translates to: TMPNLPVLLNLKFKGCKLRGGRK*LANCLT
Trigger: TGTCAGGCAGTTTGCAAGCCATTTTCTTCCACCTCT...CAGTTTACAACCTTTAAATTTTAGATTAAGAAGAACTGGTAGGTTGGGCATGGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR GCA 90 bp ACCATGCCCAACCTACCAGTTCTTCTTAATCTAAAATTTAAAGGTTGTAAACTGTGGTCTTCACTCTTGTaGAATACCAGTAGACAAGGA +
Preference number: 4 (lower is better)
Translates to: TMPNLPVLLNLKFKGCKLWSSLL*NTSRQG
Trigger: TCCTTGTCTACTGGTATTGCACAAGAGTGAAGACCA...CAGTTTACAACCTTTAAATTTTAGATTAAGAAGAACTGGTAGGTTGGGCATGGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR GCA 90 bp GGTGGGGTAAAGATTTACCAGCCTTACCTTTTACAATTACTGTATTTCTATCTATGGTCTTCACTCTTGTaGAATACCAGTAGACAAGGA +
Preference number: 4 (lower is better)
Translates to: GGVKIYQPYLLQLLYFYLWSSLL*NTSRQG
Trigger: TCCTTGTCTACTGGTATTGCACAAGAGTGAAGACCA...TAGATAGAAATACAGTAATTGTAAAAGGTAAGGCTGGTAAATCTTTACCCCACC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
CDS-3UTR GCA 90 bp ACCATGCCCAACCTACCAGTTCTTCTTAATCTAAAATTTAAAGGTTGTAAACTGAGTTCATCTTGTACATaGTGTTCACAACCTTGCACA +
Preference number: 4 (lower is better)
Translates to: TMPNLPVLLNLKFKGCKLSSSCT*CSQPCT
Trigger: TGTGCAAGGTTGTGAACAGCATGTACAAGATGAACT...CAGTTTACAACCTTTAAATTTTAGATTAAGAAGAACTGGTAGGTTGGGCATGGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR CAA 90 bp CAGGGAGCCTCAGAAGGAAAGGCCATGTCACTGGCAAAGAGATGGGAGAACCTGACAGTGATGGTCACCTaGAGGGCCTTGTGCTTGGAT +
Preference number: 5 (lower is better)
Translates to: QGASEGKAMSLAKRWENLTVMVT*RALCLD
Trigger: ATCCAAGCACAAGGCCCTCAAGGTGACCATCACTGT...CAGGTTCTCCCATCTCTTTGCCAGTGACATGGCCTTTCCTTCTGAGGCTCCCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS CCA 90 bp TGTGGCAATACCAGATTCCCCACTGACTTGACTGTACAGGATTTCTaGGGTGCAGAGCACAGCTGCCATCACCCAGATGGTAATGCAGAC +
Preference number: 5 (lower is better)
Translates to: CGNTRFPTDLTVQDF*GAEHSCHHPDGNAD
Trigger: GTCTGCATTACCATCTGGGTGATGGCAGCTGTGCTCTGCACCCCAGAAATCCTGTACAGTCAAGTCAGTGGGGAATCTGGTATTGCCACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS CCA 90 bp AGCTTCAAGCTACCCTCTCTCCTTGTGAATGAAACCCACTGGGCCTaGCTAATGCATCCCAGGTTCTTCAGGGTCTTCACCAGATCCCTT +
Preference number: 5 (lower is better)
Translates to: SFKLPSLLVNETHWA*LMHPRFFRVFTRSL
Trigger: AAGGGATCTGGTGAAGACCCTGAAGAACCTGGGATGCATTAGCCAGGCCCAGTGGGTTTCATTCACAAGGAGAGAGGGTAGCTTGAAGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR CAA 90 bp CAGGGAGCCTCAGAAGGAAAGGCCATGTCACTGGCAAAGAGATGGGAGAACCTGATGCTGTTCACAACCTaGCACATGAAGGTCTGGAAC +
Preference number: 5 (lower is better)
Translates to: QGASEGKAMSLAKRWENLMLFTT*HMKVWN
Trigger: GTTCCAGACCTTCATGTGCAAGGTTGTGAACAGCAT...CAGGTTCTCCCATCTCTTTGCCAGTGACATGGCCTTTCCTTCTGAGGCTCCCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR CAA 90 bp GCCCAGTCTCACTCTACTGCATATCTGTGGATCAAGCATAAGCTCTCAGCGCCATTGAGGGCCTTGTGCTaGGATGACTTCTTGGCCTGT +
Preference number: 5 (lower is better)
Translates to: AQSHSTAYLWIKHKLSAPLRALC*DDFLAC
Trigger: ACAGGCCAAGAAGTCATCCAAGCACAAGGCCCTCAA...TGGCGCTGAGAGCTTATGCTTGATCCACAGATATGCAGTAGAGTGAGACTGGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
CDS-3UTR CAA 90 bp CTCTGCCTCCAAAACCCAGCTGCACTGATGATCAGCATGTGCAAGGCTGGGCTGTCATGGTCTTCACTCTaGTGCAATACCAGTAGACAA +
Preference number: 5 (lower is better)
Translates to: LCLQNPAALMISMCKAGLSWSSL*CNTSRQ
Trigger: TTGTCTACTGGTATTGCACAAGAGTGAAGACCATGA...CAGCCCAGCCTTGCACATGCTGATCATCAGTGCAGCTGGGTTTTGGAGGCAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR CAA 90 bp TGTTTCAGAAACCCACACCAGGCCCAGTCTCACTCTACTGCATATCTGTGGATCTTGAGGGCCTTGTGCTaGGATGACTTCTTGGCCTGT +
Preference number: 5 (lower is better)
Translates to: CFRNPHQAQSHSTAYLWILRALC*DDFLAC
Trigger: ACAGGCCAAGAAGTCATCCAAGCACAAGGCCCTCAA...GATCCACAGATATGCAGTAGAGTGAGACTGGGCCTGGTGTGGGTTTCTGAAACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
CDS TCA 90 bp TACATGCTGTTCACAACCTTGCACATGAAGGTCTGGAACATCCATTaGCCAGCAGCAGCAATGGCCCAGAAGGGAAGAGTGGCAAGAAAG +
Preference number: 5 (lower is better)
Translates to: YMLFTTLHMKVWNIH*PAAAMAQKGRVARK
Trigger: CTTTCTTGCCACTCTTCCCTTCTGGGCCATTGCTGCTGCTGGTCAATGGATGTTCCAGACCTTCATGTGCAAGGTTGTGAACAGCATGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR CAA 90 bp GAGGTAGCAGGGAGCCTCAGAAGGAAAGGCCATGTCACTGGCAAAGAGATGGGATCATGGTCTTCACTCTaGTGCAATACCAGTAGACAA +
Preference number: 5 (lower is better)
Translates to: EVAGSLRRKGHVTGKEMGSWSSL*CNTSRQ
Trigger: TTGTCTACTGGTATTGCACAAGAGTGAAGACCATGA...TCCCATCTCTTTGCCAGTGACATGGCCTTTCCTTCTGAGGCTCCCTGCTACCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR CAA 90 bp TCCTCTGGAACTGGAGTTGAAGACAGTTTTGAGCTGCCATGTAGGTGTTGGGAATTGAGGGCCTTGTGCTaGGATGACTTCTTGGCCTGT +
Preference number: 5 (lower is better)
Translates to: SSGTGVEDSFELPCRCWELRALC*DDFLAC
Trigger: ACAGGCCAAGAAGTCATCCAAGCACAAGGCCCTCAA...TTCCCAACACCTACATGGCAGCTCAAAACTGTCTTCAACTCCAGTTCCAGAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR CAA 90 bp CCAACTGCTGCGCTTCTGGAGTGCTCAGTTTTGGAAACTTTGGTAGATTCTGACTTGAGGGCCTTGTGCTaGGATGACTTCTTGGCCTGT +
Preference number: 5 (lower is better)
Translates to: PTAALLECSVLETLVDSDLRALC*DDFLAC
Trigger: ACAGGCCAAGAAGTCATCCAAGCACAAGGCCCTCAA...GTCAGAATCTACCAAAGTTTCCAAAACTGAGCACTCCAGAAGCGCAGCAGTTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR CAA 90 bp CCAACTGCTGCGCTTCTGGAGTGCTCAGTTTTGGAAACTTTGGTAGATTCTGACACAGTGATGGTCACCTaGAGGGCCTTGTGCTTGGAT +
Preference number: 5 (lower is better)
Translates to: PTAALLECSVLETLVDSDTVMVT*RALCLD
Trigger: ATCCAAGCACAAGGCCCTCAAGGTGACCATCACTGT...GTCAGAATCTACCAAAGTTTCCAAAACTGAGCACTCCAGAAGCGCAGCAGTTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR CAA 90 bp TCCTCTGGAACTGGAGTTGAAGACAGTTTTGAGCTGCCATGTAGGTGTTGGGAAACAGTGATGGTCACCTaGAGGGCCTTGTGCTTGGAT +
Preference number: 5 (lower is better)
Translates to: SSGTGVEDSFELPCRCWETVMVT*RALCLD
Trigger: ATCCAAGCACAAGGCCCTCAAGGTGACCATCACTGT...TTCCCAACACCTACATGGCAGCTCAAAACTGTCTTCAACTCCAGTTCCAGAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS TCA 90 bp GACAGTGAGGACAGTGATGGTCACCTTGAGGGCCTTGTGCTTGGATaGCTTCTTGGCCTGTACCAAGGTATGAATGATGATGGTATAGCA +
Preference number: 5 (lower is better)
Translates to: DSEDSDGHLEGLVLG*LLGLYQGMNDDGIA
Trigger: TGCTATACCATCATCATTCATACCTTGGTACAGGCCAAGAAGTCATCCAAGCACAAGGCCCTCAAGGTGACCATCACTGTCCTCACTGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR CAA 90 bp GGGACAGTGGTTCTCCCTGGCTCAAGAGAGATCAAAGAGATCAATCAGAATGGCATGCTGTTCACAACCTaGCACATGAAGGTCTGGAAC +
Preference number: 5 (lower is better)
Translates to: GTVVLPGSREIKEINQNGMLFTT*HMKVWN
Trigger: GTTCCAGACCTTCATGTGCAAGGTTGTGAACAGCAT...GCCATTCTGATTGATCTCTTTGATCTCTCTTGAGCCAGGGAGAACCACTGTCCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR CAA 90 bp TGTACAAAGCCTGTGTTTCCTGTAGTGTTCCCAAACTCCCCATCACAAACCACAACAGTGATGGTCACCTaGAGGGCCTTGTGCTTGGAT +
Preference number: 5 (lower is better)
Translates to: CTKPVFPVVFPNSPSQTTTVMVT*RALCLD
Trigger: ATCCAAGCACAAGGCCCTCAAGGTGACCATCACTGT...TGTGGTTTGTGATGGGGAGTTTGGGAACACTACAGGAAACACAGGCTTTGTACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
CDS TCA 90 bp AGCTGTAGAAGTTCATCTTGTACATGCTGTTCACAACCTTGCACATaGAGGTCTGGAACATCCATTGACCAGCAGCAGCAATGGCCCAGA +
Preference number: 5 (lower is better)
Translates to: SCRSSSCTCCSQPCT*RSGTSIDQQQQWPR
Trigger: TCTGGGCCATTGCTGCTGCTGGTCAATGGATGTTCCAGACCTTCATGTGCAAGGTTGTGAACAGCATGTACAAGATGAACTTCTACAGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR CAA 90 bp CCAACTGCTGCGCTTCTGGAGTGCTCAGTTTTGGAAACTTTGGTAGATTCTGACATGCTGTTCACAACCTaGCACATGAAGGTCTGGAAC +
Preference number: 5 (lower is better)
Translates to: PTAALLECSVLETLVDSDMLFTT*HMKVWN
Trigger: GTTCCAGACCTTCATGTGCAAGGTTGTGAACAGCAT...GTCAGAATCTACCAAAGTTTCCAAAACTGAGCACTCCAGAAGCGCAGCAGTTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR CAA 90 bp GGGACAGTGGTTCTCCCTGGCTCAAGAGAGATCAAAGAGATCAATCAGAATGGCACAGCTGACTTTAGCTaGGCATTCTTATCCTTAGGG +
Preference number: 5 (lower is better)
Translates to: GTVVLPGSREIKEINQNGTADFS*AFLSLG
Trigger: CCCTAAGGATAAGAATGCCAAGCTAAAGTCAGCTGT...GCCATTCTGATTGATCTCTTTGATCTCTCTTGAGCCAGGGAGAACCACTGTCCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR CAA 90 bp ACAGTGGTTCTCCCTGGCTCAAGAGAGATCAAAGAGATCAATCAGAATGGCATTTTGAGGGCCTTGTGCTaGGATGACTTCTTGGCCTGT +
Preference number: 5 (lower is better)
Translates to: TVVLPGSREIKEINQNGILRALC*DDFLAC
Trigger: ACAGGCCAAGAAGTCATCCAAGCACAAGGCCCTCAA...AATGCCATTCTGATTGATCTCTTTGATCTCTCTTGAGCCAGGGAGAACCACTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR CAA 90 bp TGTACAAAGCCTGTGTTTCCTGTAGTGTTCCCAAACTCCCCATCACAAACCACAATGCTGTTCACAACCTaGCACATGAAGGTCTGGAAC +
Preference number: 5 (lower is better)
Translates to: CTKPVFPVVFPNSPSQTTMLFTT*HMKVWN
Trigger: GTTCCAGACCTTCATGTGCAAGGTTGTGAACAGCAT...TGTGGTTTGTGATGGGGAGTTTGGGAACACTACAGGAAACACAGGCTTTGTACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
CDS-3UTR CAA 90 bp TCTCACTCTACTGCATATCTGTGGATCAAGCATAAGCTCTCAGCGCCATCCTTGACAGCTGACTTTAGCTaGGCATTCTTATCCTTAGGG +
Preference number: 5 (lower is better)
Translates to: SHSTAYLWIKHKLSAPSLTADFS*AFLSLG
Trigger: CCCTAAGGATAAGAATGCCAAGCTAAAGTCAGCTGT...CAAGGATGGCGCTGAGAGCTTATGCTTGATCCACAGATATGCAGTAGAGTGAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
CDS CCA 90 bp GCTGTTGCCCAAGGTGCCCACAATGAACACAAGCCAGTACAGAGGTaGAAGAAAATGGCTTGCAAACTGCCTGACATTATTTTTCTTACA +
Preference number: 5 (lower is better)
Translates to: AVAQGAHNEHKPVQR*KKMACKLPDIIFLT
Trigger: TGTAAGAAAAATAATGTCAGGCAGTTTGCAAGCCATTTTCTTCCACCTCTGTACTGGCTTGTGTTCATTGTGGGCACCTTGGGCAACAGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR CAA 90 bp CCAACTGCTGCGCTTCTGGAGTGCTCAGTTTTGGAAACTTTGGTAGATTCTGACTCATGGTCTTCACTCTaGTGCAATACCAGTAGACAA +
Preference number: 5 (lower is better)
Translates to: PTAALLECSVLETLVDSDSWSSL*CNTSRQ
Trigger: TTGTCTACTGGTATTGCACAAGAGTGAAGACCATGA...GTCAGAATCTACCAAAGTTTCCAAAACTGAGCACTCCAGAAGCGCAGCAGTTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR CAA 90 bp AGAACTGCAGTTACTATAACCAAAAACCAACTGCTGCGCTTCTGGAGTGCTCAGACAGCTGACTTTAGCTaGGCATTCTTATCCTTAGGG +
Preference number: 5 (lower is better)
Translates to: RTAVTITKNQLLRFWSAQTADFS*AFLSLG
Trigger: CCCTAAGGATAAGAATGCCAAGCTAAAGTCAGCTGT...CTGAGCACTCCAGAAGCGCAGCAGTTGGTTTTTGGTTATAGTAACTGCAGTTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR CAA 90 bp AGAACTGCAGTTACTATAACCAAAAACCAACTGCTGCGCTTCTGGAGTGCTCAGTCATGGTCTTCACTCTaGTGCAATACCAGTAGACAA +
Preference number: 5 (lower is better)
Translates to: RTAVTITKNQLLRFWSAQSWSSL*CNTSRQ
Trigger: TTGTCTACTGGTATTGCACAAGAGTGAAGACCATGA...CTGAGCACTCCAGAAGCGCAGCAGTTGGTTTTTGGTTATAGTAACTGCAGTTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR CAA 90 bp ACAGTGGTTCTCCCTGGCTCAAGAGAGATCAAAGAGATCAATCAGAATGGCATTACAGCTGACTTTAGCTaGGCATTCTTATCCTTAGGG +
Preference number: 5 (lower is better)
Translates to: TVVLPGSREIKEINQNGITADFS*AFLSLG
Trigger: CCCTAAGGATAAGAATGCCAAGCTAAAGTCAGCTGT...AATGCCATTCTGATTGATCTCTTTGATCTCTCTTGAGCCAGGGAGAACCACTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR CAA 90 bp ACCATGCCCAACCTACCAGTTCTTCTTAATCTAAAATTTAAAGGTTGTAAACTGGGTCTGGAACATCCATaGACCAGCAGCAGCAATGGC +
Preference number: 5 (lower is better)
Translates to: TMPNLPVLLNLKFKGCKLGLEHP*TSSSNG
Trigger: GCCATTGCTGCTGCTGGTCAATGGATGTTCCAGACC...CAGTTTACAACCTTTAAATTTTAGATTAAGAAGAACTGGTAGGTTGGGCATGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS CCA 90 bp AAGGTGCCCACAATGAACACAAGCCAGTACAGAGGTGGAAGAAAATaGCTTGCAAACTGCCTGACATTATTTTTCTTACAGAAGAAGCTA +
Preference number: 5 (lower is better)
Translates to: KVPTMNTSQYRGGRK*LANCLTLFFLQKKL
Trigger: TAGCTTCTTCTGTAAGAAAAATAATGTCAGGCAGTTTGCAAGCCATTTTCTTCCACCTCTGTACTGGCTTGTGTTCATTGTGGGCACCTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS-3UTR CAA 90 bp GGTGGGGTAAAGATTTACCAGCCTTACCTTTTACAATTACTGTATTTCTATCTAACAGTGATGGTCACCTaGAGGGCCTTGTGCTTGGAT +
Preference number: 5 (lower is better)
Translates to: GGVKIYQPYLLQLLYFYLTVMVT*RALCLD
Trigger: ATCCAAGCACAAGGCCCTCAAGGTGACCATCACTGT...TAGATAGAAATACAGTAATTGTAAAAGGTAAGGCTGGTAAATCTTTACCCCACC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000166236.9
ENSMUST00000180093.2
CDS CCA 72 bp ACCAGATTCCCCACTGACTTGACTGTACAGGATTTCTaGGGTGCAGAGCACAGCTGCCATCACCCAGATGGT +
Preference number: 6 (lower is better)
Translates to: TRFPTDLTVQDF*GAEHSCHHPDG
Trigger: ACCATCTGGGTGATGGCAGCTGTGCTCTGCACCCCAGAAATCCTGTACAGTCAAGTCAGTGGGGAATCTGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS CAA 90 bp AGGGTAGACCATGGTACATGTGGCAATACCAGATTCCCCACTGACTaGACTGTACAGGATTTCTGGGGTGCAGAGCACAGCTGCCATCAC +
Preference number: 6 (lower is better)
Translates to: RVDHGTCGNTRFPTD*TVQDFWGAEHSCHH
Trigger: GTGATGGCAGCTGTGCTCTGCACCCCAGAAATCCTGTACAGTCAAGTCAGTGGGGAATCTGGTATTGCCACATGTACCATGGTCTACCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS CAA 72 bp GTTCACAACCTTGCACATGAAGGTCTGGAACATCCATaGACCAGCAGCAGCAATGGCCCAGAAGGGAAGAGT +
Preference number: 6 (lower is better)
Translates to: VHNLAHEGLEHP*TSSSNGPEGKS
Trigger: ACTCTTCCCTTCTGGGCCATTGCTGCTGCTGGTCAATGGATGTTCCAGACCTTCATGTGCAAGGTTGTGAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS CAA 72 bp CATGGTACATGTGGCAATACCAGATTCCCCACTGACTaGACTGTACAGGATTTCTGGGGTGCAGAGCACAGC +
Preference number: 6 (lower is better)
Translates to: HGTCGNTRFPTD*TVQDFWGAEHS
Trigger: GCTGTGCTCTGCACCCCAGAAATCCTGTACAGTCAAGTCAGTGGGGAATCTGGTATTGCCACATGTACCATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS CAA 72 bp AAGACAGTGAGGACAGTGATGGTCACCTTGAGGGCCTaGTGCTTGGATGACTTCTTGGCCTGTACCAAGGTA +
Preference number: 6 (lower is better)
Translates to: KTVRTVMVTLRA*CLDDFLACTKV
Trigger: TACCTTGGTACAGGCCAAGAAGTCATCCAAGCACAAGGCCCTCAAGGTGACCATCACTGTCCTCACTGTCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS CAA 90 bp GTACATGCTGTTCACAACCTTGCACATGAAGGTCTGGAACATCCATaGACCAGCAGCAGCAATGGCCCAGAAGGGAAGAGTGGCAAGAAA +
Preference number: 6 (lower is better)
Translates to: VHAVHNLAHEGLEHP*TSSSNGPEGKSGKK
Trigger: TTTCTTGCCACTCTTCCCTTCTGGGCCATTGCTGCTGCTGGTCAATGGATGTTCCAGACCTTCATGTGCAAGGTTGTGAACAGCATGTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS TCA 72 bp ATGGTACATGTGGCAATACCAGATTCCCCACTGACTTaGCTGTACAGGATTTCTGGGGTGCAGAGCACAGCT +
Preference number: 6 (lower is better)
Translates to: MVHVAIPDSPLT*LYRISGVQSTA
Trigger: AGCTGTGCTCTGCACCCCAGAAATCCTGTACAGTCAAGTCAGTGGGGAATCTGGTATTGCCACATGTACCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS TCA 72 bp AGACCATGGTACATGTGGCAATACCAGATTCCCCACTaGCTTGACTGTACAGGATTTCTGGGGTGCAGAGCA +
Preference number: 6 (lower is better)
Translates to: RPWYMWQYQIPH*LDCTGFLGCRA
Trigger: TGCTCTGCACCCCAGAAATCCTGTACAGTCAAGTCAGTGGGGAATCTGGTATTGCCACATGTACCATGGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS TCA 72 bp ATCTTGCTGTATAGCAGCCTTTTCTGCCTCCAGACCTaGGCCTTCATGGCCTGTACAATGGCAATGTATCTG +
Preference number: 6 (lower is better)
Translates to: ILLYSSLFCLQT*AFMACTMAMYL
Trigger: CAGATACATTGCCATTGTACAGGCCATGAAGGCTCAGGTCTGGAGGCAGAAAAGGCTGCTATACAGCAAGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS TCA 72 bp GACAGTGATGGTCACCTTGAGGGCCTTGTGCTTGGATaGCTTCTTGGCCTGTACCAAGGTATGAATGATGAT +
Preference number: 6 (lower is better)
Translates to: DSDGHLEGLVLG*LLGLYQGMNDD
Trigger: ATCATCATTCATACCTTGGTACAGGCCAAGAAGTCATCCAAGCACAAGGCCCTCAAGGTGACCATCACTGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2
CDS CCA 72 bp CAAGGTGCCCACAATGAACACAAGCCAGTACAGAGGTaGAAGAAAATGGCTTGCAAACTGCCTGACATTATT +
Preference number: 6 (lower is better)
Translates to: QGAHNEHKPVQR*KKMACKLPDII
Trigger: AATAATGTCAGGCAGTTTGCAAGCCATTTTCTTCCACCTCTGTACTGGCTTGTGTTCATTGTGGGCACCTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111454.4
ENSMUST00000163559.8
ENSMUST00000166236.9
ENSMUST00000168910.2
ENSMUST00000180093.2