Pregenerated sensors for CCR8 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000042262Ensembl transcript IDs: ENSMUST00000048777.4
Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | TGGTCCTGTTGTGGTTCAGGCAGCCCCGCAGCTGCTGCAGGATCCTaGCATAGCAGAACAGGAGGATGGCAAAGGGGAGCAGCAGACCCA | + |
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Preference number: 5 (lower is better) Translates to: WSCCGSGSPAAAAGS*HSRTGGWQRGAADP Trigger: TGGGTCTGCTGCTCCCCTTTGCCATCCTCCTGTTCTGCTATGTCAGGATCCTGCAGCAGCTGCGGGGCTGCCTGAACCACAACAGGACCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048777.4 |
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| CDS GCA 90 bp | GCCAGCCTCTGCCTCGTGGCACATCCATCCAAGATGTGCAGGTCGTaGAGGGACGTGAGGAAAAGGGCCACGTTGAATGGGACCCAGAAG | + |
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Preference number: 5 (lower is better) Translates to: ASLCLVAHPSKMCRS*RDVRKRATLNGTQK Trigger: CTTCTGGGTCCCATTCAACGTGGCCCTTTTCCTCACGTCCCTGCACGACCTGCACATCTTGGATGGATGTGCCACGAGGCAGAGGCTGGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048777.4 |
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| CDS GCA 90 bp | ATGGCCAGAGCCAGCCTCTGCCTCGTGGCACATCCATCCAAGATGTaGAGGTCGTGCAGGGACGTGAGGAAAAGGGCCACGTTGAATGGG | + |
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Preference number: 5 (lower is better) Translates to: MARASLCLVAHPSKM*RSCRDVRKRATLNG Trigger: CCCATTCAACGTGGCCCTTTTCCTCACGTCCCTGCACGACCTGCACATCTTGGATGGATGTGCCACGAGGCAGAGGCTGGCTCTGGCCAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048777.4 |
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| CDS TCA 90 bp | CACATCGCAGTCCCAAACACCCACTGGTCCAGCAGGTTGTGGGTCTaGAAAGGAATAGAGAGGACAAAGAGCAGGTCGGATGCGGCCAGG | + |
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Preference number: 5 (lower is better) Translates to: HIAVPNTHWSSRLWV*KGIERTKSRSDAAR Trigger: CCTGGCCGCATCCGACCTGCTCTTTGTCCTCTCTATTCCTTTTCAGACCCACAACCTGCTGGACCAGTGGGTGTTTGGGACTGCGATGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048777.4 |
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| CDS GCA 90 bp | GTAAAAGAGATGACCTCTGTGACATGGATGGCCAGAGCCAGCCTCTaGCTCGTGGCACATCCATCCAAGATGTGCAGGTCGTGCAGGGAC | + |
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Preference number: 5 (lower is better) Translates to: VKEMTSVTWMARASL*LVAHPSKMCRSCRD Trigger: GTCCCTGCACGACCTGCACATCTTGGATGGATGTGCCACGAGGCAGAGGCTGGCTCTGGCCATCCATGTCACAGAGGTCATCTCTTTTAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048777.4 |
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| CDS GCA 90 bp | GTACAAGATGGCCAGATACAGCATGCTGCCCCTGAGGAGGAACTCTaGGTCACAGGGGGCGGTGAAGAAATCAGGGTAGTAGTCGGTCAT | + |
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Preference number: 5 (lower is better) Translates to: VQDGQIQHAAPEEEL*VTGGGEEIRVVVGH Trigger: ATGACCGACTACTACCCTGATTTCTTCACCGCCCCCTGTGACGCAGAGTTCCTCCTCAGGGGCAGCATGCTGTATCTGGCCATCTTGTAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048777.4 |
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| CDS GCA 72 bp | GCCAGCCTCTGCCTCGTGGCACATCCATCCAAGATGTaGAGGTCGTGCAGGGACGTGAGGAAAAGGGCCACG | + |
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Preference number: 6 (lower is better) Translates to: ASLCLVAHPSKM*RSCRDVRKRAT Trigger: CGTGGCCCTTTTCCTCACGTCCCTGCACGACCTGCACATCTTGGATGGATGTGCCACGAGGCAGAGGCTGGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048777.4 |
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| CDS CCA 72 bp | ACGGTGAGCACCAGCTTGATGGCTCTGGTCCTGTTGTaGTTCAGGCAGCCCCGCAGCTGCTGCAGGATCCTG | + |
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Preference number: 6 (lower is better) Translates to: TVSTSLMALVLL*FRQPRSCCRIL Trigger: CAGGATCCTGCAGCAGCTGCGGGGCTGCCTGAACCACAACAGGACCAGAGCCATCAAGCTGGTGCTCACCGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048777.4 |
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| CDS CAA 72 bp | ACTACGGTGAGCACCAGCTTGATGGCTCTGGTCCTGTaGTGGTTCAGGCAGCCCCGCAGCTGCTGCAGGATC | + |
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Preference number: 6 (lower is better) Translates to: TTVSTSLMALVL*WFRQPRSCCRI Trigger: GATCCTGCAGCAGCTGCGGGGCTGCCTGAACCACAACAGGACCAGAGCCATCAAGCTGGTGCTCACCGTAGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048777.4 |
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| CDS CAA 90 bp | GGGACCCAGAAGAGTAAAGACACAATGACTACGGTGAGCACCAGCTaGATGGCTCTGGTCCTGTTGTGGTTCAGGCAGCCCCGCAGCTGC | + |
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Preference number: 6 (lower is better) Translates to: GTQKSKDTMTTVSTS*MALVLLWFRQPRSC Trigger: GCAGCTGCGGGGCTGCCTGAACCACAACAGGACCAGAGCCATCAAGCTGGTGCTCACCGTAGTCATTGTGTCTTTACTCTTCTGGGTCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048777.4 |
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| CDS GCA 72 bp | GGCCAGATACAGCATGCTGCCCCTGAGGAGGAACTCTaGGTCACAGGGGGCGGTGAAGAAATCAGGGTAGTA | + |
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Preference number: 6 (lower is better) Translates to: GQIQHAAPEEEL*VTGGGEEIRVV Trigger: TACTACCCTGATTTCTTCACCGCCCCCTGTGACGCAGAGTTCCTCCTCAGGGGCAGCATGCTGTATCTGGCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048777.4 |
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| CDS GCA 72 bp | TGCCTCGTGGCACATCCATCCAAGATGTGCAGGTCGTaGAGGGACGTGAGGAAAAGGGCCACGTTGAATGGG | + |
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Preference number: 6 (lower is better) Translates to: CLVAHPSKMCRS*RDVRKRATLNG Trigger: CCCATTCAACGTGGCCCTTTTCCTCACGTCCCTGCACGACCTGCACATCTTGGATGGATGTGCCACGAGGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048777.4 |
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| CDS TCA 72 bp | TGCTCCTCAGTTTCTTGCAGCCCACGAGGACTAAGATaGCCAGGCTGTTCCCCAGAAGGCCCAGCACAAACA | + |
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Preference number: 6 (lower is better) Translates to: CSSVSCSPRGLR*PGCSPEGPAQT Trigger: TGTTTGTGCTGGGCCTTCTGGGGAACAGCCTGGTCATCTTAGTCCTCGTGGGCTGCAAGAAACTGAGGAGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048777.4 |
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| CDS TCA 72 bp | GTCCCAAACACCCACTGGTCCAGCAGGTTGTGGGTCTaGAAAGGAATAGAGAGGACAAAGAGCAGGTCGGAT | + |
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Preference number: 6 (lower is better) Translates to: VPNTHWSSRLWV*KGIERTKSRSD Trigger: ATCCGACCTGCTCTTTGTCCTCTCTATTCCTTTTCAGACCCACAACCTGCTGGACCAGTGGGTGTTTGGGAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048777.4 |
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