Pregenerated sensors for CCR6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000040899

Ensembl transcript IDs: ENSMUST00000097418.8, ENSMUST00000164411.10, ENSMUST00000166348.10, ENSMUST00000167956.10, ENSMUST00000177568.9, ENSMUST00000180103.3, ENSMUST00000231545.2

Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	CGAGGACTTTCTCGGTGCTGCAGCTCCGGCCCACTTTGCCCGTGTTaGCCGCAGTCACGAGGAGGACCATGTTGTGAGGGATCTGACAAG	+
Preference number: 5 (lower is better) Translates to: RGLSRCCSSGPLCPC*PQSRGGPCCEGSDK Trigger: CTTGTCAGATCCCTCACAACATGGTCCTCCTCGTGACTGCGGTCAACACGGGCAAAGTGGGCCGGAGCTGCAGCACCGAGAAAGTCCTCG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000097418.8 ENSMUST00000164411.10 ENSMUST00000166348.10 ENSMUST00000167956.10 ENSMUST00000177568.9 ENSMUST00000180103.3 ENSMUST00000231545.2
CDS TCA 90 bp	GAACAGCTCCAGTCCCATACCCAGCAGCTTCCACGTGATGGGCTCTaGGACAGACCTGTACCGTGGCTCACAGACATCACGATCCTGCAG	+
Preference number: 5 (lower is better) Translates to: EQLQSHTQQLPRDGL*DRPVPWLTDITILQ Trigger: CTGCAGGATCGTGATGTCTGTGAGCCACGGTACAGGTCTGTCTCAGAGCCCATCACGTGGAAGCTGCTGGGTATGGGACTGGAGCTGTTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000097418.8 ENSMUST00000164411.10 ENSMUST00000166348.10 ENSMUST00000167956.10 ENSMUST00000177568.9 ENSMUST00000180103.3 ENSMUST00000231545.2
CDS TCA 90 bp	AGAACCCAAAGAACAGCTCCAGTCCCATACCCAGCAGCTTCCACGTaGTGGGCTCTGAGACAGACCTGTACCGTGGCTCACAGACATCAC	+
Preference number: 5 (lower is better) Translates to: RTQRTAPVPYPAAST*WALRQTCTVAHRHH Trigger: GTGATGTCTGTGAGCCACGGTACAGGTCTGTCTCAGAGCCCATCACGTGGAAGCTGCTGGGTATGGGACTGGAGCTGTTCTTTGGGTTCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000097418.8 ENSMUST00000164411.10 ENSMUST00000166348.10 ENSMUST00000167956.10 ENSMUST00000177568.9 ENSMUST00000180103.3 ENSMUST00000231545.2
CDS GCA 90 bp	CTGACAAGCCAGGAACACGAGAACCACAGCGATCACGACTCGGATTaGTCTGTGCCTCTTGGAGTTCTGGGCCTGCACCAAGGTCTTGAT	+
Preference number: 5 (lower is better) Translates to: LTSQEHENHSDHDSD*SVPLGVLGLHQGLD Trigger: ATCAAGACCTTGGTGCAGGCCCAGAACTCCAAGAGGCACAGAGCAATCCGAGTCGTGATCGCTGTGGTTCTCGTGTTCCTGGCTTGTCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000097418.8 ENSMUST00000164411.10 ENSMUST00000166348.10 ENSMUST00000167956.10 ENSMUST00000177568.9 ENSMUST00000180103.3 ENSMUST00000231545.2
CDS GCA 90 bp	GCCAGGAACACGAGAACCACAGCGATCACGACTCGGATTGCTCTGTaGCTCTTGGAGTTCTGGGCCTGCACCAAGGTCTTGATAATGAAC	+
Preference number: 5 (lower is better) Translates to: ARNTRTTAITTRIAL*LLEFWACTKVLIMN Trigger: GTTCATTATCAAGACCTTGGTGCAGGCCCAGAACTCCAAGAGGCACAGAGCAATCCGAGTCGTGATCGCTGTGGTTCTCGTGTTCCTGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000097418.8 ENSMUST00000164411.10 ENSMUST00000166348.10 ENSMUST00000167956.10 ENSMUST00000177568.9 ENSMUST00000180103.3 ENSMUST00000231545.2
CDS GCA 90 bp	ATGATGATGGAGATGAACCACACTGCCACACAGATGACCTTACTGTaGGTCAGTGTTCTGGAGCGTACCCGGAAAGATTTGGTTGCCTGG	+
Preference number: 5 (lower is better) Translates to: MMMEMNHTATQMTLL*VSVLERTRKDLVAW Trigger: CCAGGCAACCAAATCTTTCCGGGTACGCTCCAGAACACTGACGCACAGTAAGGTCATCTGTGTGGCAGTGTGGTTCATCTCCATCATCAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000097418.8 ENSMUST00000164411.10 ENSMUST00000166348.10 ENSMUST00000167956.10 ENSMUST00000177568.9 ENSMUST00000180103.3 ENSMUST00000231545.2
CDS GCA 90 bp	GGCTCTGAGACAGACCTGTACCGTGGCTCACAGACATCACGATCCTaGAGCTCGTATTTCTTGTTGAAGATAAATGTAGGGCTTGAGATG	+
Preference number: 5 (lower is better) Translates to: GSETDLYRGSQTSRS*SSYFLLKINVGLEM Trigger: CATCTCAAGCCCTACATTTATCTTCAACAAGAAATACGAGCTGCAGGATCGTGATGTCTGTGAGCCACGGTACAGGTCTGTCTCAGAGCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000097418.8 ENSMUST00000164411.10 ENSMUST00000166348.10 ENSMUST00000167956.10 ENSMUST00000177568.9 ENSMUST00000180103.3 ENSMUST00000231545.2
CDS GCA 90 bp	ACAGTTAAAGTTGACCGCATATGTGCCTTTCATCAGTTTACACAGTaGATCGCTGAAAACCCAAGTGTTGGTGGCATGAGTAACTGCCCA	+
Preference number: 5 (lower is better) Translates to: TVKVDRICAFHQFTQ*IAENPSVGGMSNCP Trigger: TGGGCAGTTACTCATGCCACCAACACTTGGGTTTTCAGCGATGCACTGTGTAAACTGATGAAAGGCACATATGCGGTCAACTTTAACTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENSMUST00000097418.8 ENSMUST00000164411.10 ENSMUST00000166348.10 ENSMUST00000167956.10 ENSMUST00000177568.9 ENSMUST00000180103.3 ENSMUST00000231545.2
CDS TCA 72 bp	TCTCGGTGCTGCAGCTCCGGCCCACTTTGCCCGTGTTaGCCGCAGTCACGAGGAGGACCATGTTGTGAGGGA	+
Preference number: 6 (lower is better) Translates to: SRCCSSGPLCPC*PQSRGGPCCEG Trigger: TCCCTCACAACATGGTCCTCCTCGTGACTGCGGTCAACACGGGCAAAGTGGGCCGGAGCTGCAGCACCGAGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000097418.8 ENSMUST00000164411.10 ENSMUST00000166348.10 ENSMUST00000167956.10 ENSMUST00000177568.9 ENSMUST00000180103.3 ENSMUST00000231545.2
CDS CCA 72 bp	AGCAATGCAGGAAAGCCAGGACCTCGGCCACGTTCCTaGTGTAGGCGAGGACTTTCTCGGTGCTGCAGCTCC	+
Preference number: 6 (lower is better) Translates to: SNAGKPGPRPRS*CRRGLSRCCSS Trigger: GGAGCTGCAGCACCGAGAAAGTCCTCGCCTACACCAGGAACGTGGCCGAGGTCCTGGCTTTCCTGCATTGCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000097418.8 ENSMUST00000164411.10 ENSMUST00000166348.10 ENSMUST00000167956.10 ENSMUST00000177568.9 ENSMUST00000180103.3 ENSMUST00000231545.2
CDS TCA 72 bp	CAGTCCCATACCCAGCAGCTTCCACGTGATGGGCTCTaGGACAGACCTGTACCGTGGCTCACAGACATCACG	+
Preference number: 6 (lower is better) Translates to: QSHTQQLPRDGL*DRPVPWLTDIT Trigger: CGTGATGTCTGTGAGCCACGGTACAGGTCTGTCTCAGAGCCCATCACGTGGAAGCTGCTGGGTATGGGACTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000097418.8 ENSMUST00000164411.10 ENSMUST00000166348.10 ENSMUST00000167956.10 ENSMUST00000177568.9 ENSMUST00000180103.3 ENSMUST00000231545.2
CDS CAA 72 bp	ACCACAGCGATCACGACTCGGATTGCTCTGTGCCTCTaGGAGTTCTGGGCCTGCACCAAGGTCTTGATAATG	+
Preference number: 6 (lower is better) Translates to: TTAITTRIALCL*EFWACTKVLIM Trigger: CATTATCAAGACCTTGGTGCAGGCCCAGAACTCCAAGAGGCACAGAGCAATCCGAGTCGTGATCGCTGTGGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000097418.8 ENSMUST00000164411.10 ENSMUST00000166348.10 ENSMUST00000167956.10 ENSMUST00000177568.9 ENSMUST00000180103.3 ENSMUST00000231545.2
CDS GCA 72 bp	GAGATGAACCACACTGCCACACAGATGACCTTACTGTaGGTCAGTGTTCTGGAGCGTACCCGGAAAGATTTG	+
Preference number: 6 (lower is better) Translates to: EMNHTATQMTLL*VSVLERTRKDL Trigger: CAAATCTTTCCGGGTACGCTCCAGAACACTGACGCACAGTAAGGTCATCTGTGTGGCAGTGTGGTTCATCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000097418.8 ENSMUST00000164411.10 ENSMUST00000166348.10 ENSMUST00000167956.10 ENSMUST00000177568.9 ENSMUST00000180103.3 ENSMUST00000231545.2
CDS CCA 72 bp	ATGCATTATCATTTTCGACGGTCTCACTGGTCTGCCTaGAGATGTAGCTTTCCGAGTAAACCCGGGCACAGA	+
Preference number: 6 (lower is better) Translates to: MHYHFRRSHWSA*RCSFPSKPGHR Trigger: TCTGTGCCCGGGTTTACTCGGAAAGCTACATCTCCAGGCAGACCAGTGAGACCGTCGAAAATGATAATGCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENSMUST00000097418.8 ENSMUST00000164411.10 ENSMUST00000166348.10 ENSMUST00000167956.10 ENSMUST00000177568.9 ENSMUST00000180103.3 ENSMUST00000231545.2
CDS CCA 72 bp	TGGCCATGTTCAACAGGTAGACGTCAGTCATGGATCTaGCTTTCTTGTAGAAGGCAAAGGTCATCACCACCA	+
Preference number: 6 (lower is better) Translates to: WPCSTGRRQSWI*LSCRRQRSSPP Trigger: TGGTGGTGATGACCTTTGCCTTCTACAAGAAAGCCAGATCCATGACTGACGTCTACCTGTTGAACATGGCCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000097418.8 ENSMUST00000164411.10 ENSMUST00000166348.10 ENSMUST00000167956.10 ENSMUST00000177568.9 ENSMUST00000180103.3 ENSMUST00000231545.2
CDS GCA 72 bp	GTTGACCGCATATGTGCCTTTCATCAGTTTACACAGTaGATCGCTGAAAACCCAAGTGTTGGTGGCATGAGT	+
Preference number: 6 (lower is better) Translates to: VDRICAFHQFTQ*IAENPSVGGMS Trigger: ACTCATGCCACCAACACTTGGGTTTTCAGCGATGCACTGTGTAAACTGATGAAAGGCACATATGCGGTCAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENSMUST00000097418.8 ENSMUST00000164411.10 ENSMUST00000166348.10 ENSMUST00000167956.10 ENSMUST00000177568.9 ENSMUST00000180103.3 ENSMUST00000231545.2
CDS CAA 90 bp	TACCGTGGCTCACAGACATCACGATCCTGCAGCTCGTATTTCTTGTaGAAGATAAATGTAGGGCTTGAGATGATGATGGAGATGAACCAC	+
Preference number: 6 (lower is better) Translates to: YRGSQTSRSCSSYFL*KINVGLEMMMEMNH Trigger: GTGGTTCATCTCCATCATCATCTCAAGCCCTACATTTATCTTCAACAAGAAATACGAGCTGCAGGATCGTGATGTCTGTGAGCCACGGTA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000097418.8 ENSMUST00000164411.10 ENSMUST00000166348.10 ENSMUST00000167956.10 ENSMUST00000177568.9 ENSMUST00000180103.3 ENSMUST00000231545.2
CDS CAA 90 bp	CTGTACCGTGGCTCACAGACATCACGATCCTGCAGCTCGTATTTCTaGTTGAAGATAAATGTAGGGCTTGAGATGATGATGGAGATGAAC	+
Preference number: 6 (lower is better) Translates to: LYRGSQTSRSCSSYF*LKINVGLEMMMEMN Trigger: GTTCATCTCCATCATCATCTCAAGCCCTACATTTATCTTCAACAAGAAATACGAGCTGCAGGATCGTGATGTCTGTGAGCCACGGTACAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000097418.8 ENSMUST00000164411.10 ENSMUST00000166348.10 ENSMUST00000167956.10 ENSMUST00000177568.9 ENSMUST00000180103.3 ENSMUST00000231545.2
CDS CAA 72 bp	GGCTCACAGACATCACGATCCTGCAGCTCGTATTTCTaGTTGAAGATAAATGTAGGGCTTGAGATGATGATG	+
Preference number: 6 (lower is better) Translates to: GSQTSRSCSSYF*LKINVGLEMMM Trigger: CATCATCATCTCAAGCCCTACATTTATCTTCAACAAGAAATACGAGCTGCAGGATCGTGATGTCTGTGAGCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000097418.8 ENSMUST00000164411.10 ENSMUST00000166348.10 ENSMUST00000167956.10 ENSMUST00000177568.9 ENSMUST00000180103.3 ENSMUST00000231545.2
CDS TCA 72 bp	CAGCTCGTATTTCTTGTTGAAGATAAATGTAGGGCTTaGGATGATGATGGAGATGAACCACACTGCCACACA	+
Preference number: 6 (lower is better) Translates to: QLVFLVEDKCRA*DDDGDEPHCHT Trigger: TGTGTGGCAGTGTGGTTCATCTCCATCATCATCTCAAGCCCTACATTTATCTTCAACAAGAAATACGAGCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000097418.8 ENSMUST00000164411.10 ENSMUST00000166348.10 ENSMUST00000167956.10 ENSMUST00000177568.9 ENSMUST00000180103.3 ENSMUST00000231545.2
CDS CAA 72 bp	TCACAGACATCACGATCCTGCAGCTCGTATTTCTTGTaGAAGATAAATGTAGGGCTTGAGATGATGATGGAG	+
Preference number: 6 (lower is better) Translates to: SQTSRSCSSYFL*KINVGLEMMME Trigger: CTCCATCATCATCTCAAGCCCTACATTTATCTTCAACAAGAAATACGAGCTGCAGGATCGTGATGTCTGTGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000097418.8 ENSMUST00000164411.10 ENSMUST00000166348.10 ENSMUST00000167956.10 ENSMUST00000177568.9 ENSMUST00000180103.3 ENSMUST00000231545.2

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