Pregenerated sensors for CCR5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000079227Ensembl transcript IDs: ENSMUST00000097855.4, ENSMUST00000111442.3, ENSMUST00000168179.8
Found 127 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ATGGCAATCAGGCATATTTACAGCCGCCTTTCAGGAACCCAGCGGTaGGACACGTCATCTCTAGGCCACAGCATCGGCCCTGTGTCCGTC | + |
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Preference number: 1 (lower is better) Translates to: MAIRHIYSRLSGTQR*DTSSLGHSIGPVSV Trigger: GACGGACACAGGGCCGATGCTGTGGCCTAGAGATGACGTGTCTCACCGCTGGGTTCCTGAAAGGCGGCTGTAAATATGCCTGATTGCCAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
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| 3UTR CCA 90 bp | AGGCCACAGCATCGGCCCTGTGTCCGTCCCTTTGCATATGGGTCATaGCACCTGCCTCAAGTCTCTTTGTGCATATTTCCCGGCCCTGAT | + |
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Preference number: 1 (lower is better) Translates to: RPQHRPCVRPFAYGS*HLPQVSLCIFPGPD Trigger: ATCAGGGCCGGGAAATATGCACAAAGAGACTTGAGGCAGGTGCCATGACCCATATGCAAAGGGACGGACACAGGGCCGATGCTGTGGCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
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| 3UTR GCA 90 bp | AGCATCGGCCCTGTGTCCGTCCCTTTGCATATGGGTCATGGCACCTaGCTCAAGTCTCTTTGTGCATATTTCCCGGCCCTGATAAAAGAC | + |
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Preference number: 1 (lower is better) Translates to: SIGPVSVPLHMGHGT*LKSLCAYFPALIKD Trigger: GTCTTTTATCAGGGCCGGGAAATATGCACAAAGAGACTTGAGGCAGGTGCCATGACCCATATGCAAAGGGACGGACACAGGGCCGATGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
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| 3UTR TCA 90 bp | TTTGAACTCAGGACCTTCGGAAGAGCAGTCAGTGCTCTTAATCGCTaGGCCATCTCTCCAGCCCCATCATTTGAAATCTTCTCATCCCAG | + |
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Preference number: 1 (lower is better) Translates to: FELRTFGRAVSALNR*AISPAPSFEIFSSQ Trigger: CTGGGATGAGAAGATTTCAAATGATGGGGCTGGAGAGATGGCTCAGCGATTAAGAGCACTGACTGCTCTTCCGAAGGTCCTGAGTTCAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097855.4 |
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| 3UTR TCA 90 bp | GAACATCTTTGCACACCCTCTTTGGAAGCTGGGGCTGTAGCAGACTaGAAATCAGCATTGTTCCAGACTCTCCTTGGAGGATCTATCCTC | + |
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Preference number: 1 (lower is better) Translates to: EHLCTPSLEAGAVAD*KSALFQTLLGGSIL Trigger: GAGGATAGATCCTCCAAGGAGAGTCTGGAACAATGCTGATTTTCAGTCTGCTACAGCCCCAGCTTCCAAAGAGGGTGTGCAAAGATGTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
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| 3UTR CCA 90 bp | TGGGGCTGTAGCAGACTGAAAATCAGCATTGTTCCAGACTCTCCTTaGAGGATCTATCCTCTCTCTGGACAAGAAACATGTGCACAGAAA | + |
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Preference number: 1 (lower is better) Translates to: WGCSRLKISIVPDSP*RIYPLSGQETCAQK Trigger: TTTCTGTGCACATGTTTCTTGTCCAGAGAGAGGATAGATCCTCCAAGGAGAGTCTGGAACAATGCTGATTTTCAGTCTGCTACAGCCCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
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| 3UTR GCA 90 bp | TCTTCAGAAGCAGTGAGAAAGAGCTGTGTGTCAAATACCCTGAGCTaGTCTGGATATGCCTCTGTCCACACTGGAATTAAAGACACAAAC | + |
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Preference number: 1 (lower is better) Translates to: SSEAVRKSCVSNTLS*SGYASVHTGIKDTN Trigger: GTTTGTGTCTTTAATTCCAGTGTGGACAGAGGCATATCCAGAGCAGCTCAGGGTATTTGACACACAGCTCTTTCTCACTGCTTCTGAAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
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| 3UTR TCA 90 bp | AGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGGCCTCACCCTCTCTaGCTCCCACTCAAATACCAGACCATAAAGTTGCATATCTTTATT | + |
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Preference number: 1 (lower is better) Translates to: RERERERERERPHPL*LPLKYQTIKLHIFI Trigger: AATAAAGATATGCAACTTTATGGTCTGGTATTTGAGTGGGAGTCAGAGAGGGTGAGGCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
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| 3UTR CCA 90 bp | GCTTCTGGACTCTGCTTTCTGGACGTCTGTAACATGAACAGTCTCTaGTATACATACCCATGTACTTTGATACAATGCTATGACTTCCCC | + |
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Preference number: 1 (lower is better) Translates to: ASGLCFLDVCNMNSL*YTYPCTLIQCYDFP Trigger: GGGGAAGTCATAGCATTGTATCAAAGTACATGGGTATGTATACCAGAGACTGTTCATGTTACAGACGTCCAGAAAGCAGAGTCCAGAAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
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| 3UTR CCA 90 bp | CAAAGAGTTAAAGTAACAGTTAAATTGCCAAAAGTAAGAAGGTTTTaGCTCTGGGATCACCAATGCCACCCTTGCTGCCCTTCTCAGGGA | + |
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Preference number: 1 (lower is better) Translates to: QRVKVTVKLPKVRRF*LWDHQCHPCCPSQG Trigger: TCCCTGAGAAGGGCAGCAAGGGTGGCATTGGTGATCCCAGAGCCAAAACCTTCTTACTTTTGGCAATTTAACTGTTACTTTAACTCTTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
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| 3UTR CCA 90 bp | CCATACAAGTCTCCTCTTTTTGGAGAGCCTTCTTTCATGTGGCTATaGTTAGCTGAGAACACTGTAAAAGGGCTTTCAATCATGTTTCTG | + |
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Preference number: 1 (lower is better) Translates to: PYKSPLFGEPSFMWL*LAENTVKGLSIMFL Trigger: CAGAAACATGATTGAAAGCCCTTTTACAGTGTTCTCAGCTAACCATAGCCACATGAAAGAAGGCTCTCCAAAAAGAGGAGACTTGTATGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000111442.3 ENSMUST00000168179.8 |
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| 3UTR TCA 90 bp | ACCCTGAATATGAACAACACCATTTTATGGACTGGGGAATTGGACTaGATAAAGAGGAGAAAGAGAGCTGACACCAGCATTCAATTCTTT | + |
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Preference number: 1 (lower is better) Translates to: TLNMNNTILWTGELD*IKRRKRADTSIQFF Trigger: AAAGAATTGAATGCTGGTGTCAGCTCTCTTTCTCCTCTTTATTCAGTCCAATTCCCCAGTCCATAAAATGGTGTTGTTCATATTCAGGGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
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| 3UTR GCA 90 bp | TCCGAGCACCATGATGTTAGCTGTTCTGCTCTAACACTATCTTTCTaGCATGATGGACTAACTTCTGAATCTCTGAACCAAAATAAATCT | + |
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Preference number: 1 (lower is better) Translates to: SEHHDVSCSALTLSF*HDGLTSESLNQNKS Trigger: AGATTTATTTTGGTTCAGAGATTCAGAAGTTAGTCCATCATGGCAGAAAGATAGTGTTAGAGCAGAACAGCTAACATCATGGTGCTCGGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
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| 3UTR TCA 90 bp | TACTTCCTAAGCTCCCACTGCTTCAACATGATATTCAGGCCAATATaGATTTTAAGTTCTTACCTTCTCATCCCAGAGTTTGGTTTTTAC | + |
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Preference number: 1 (lower is better) Translates to: YFLSSHCFNMIFRPI*ILSSYLLIPEFGFY Trigger: GTAAAAACCAAACTCTGGGATGAGAAGGTAAGAACTTAAAATTCATATTGGCCTGAATATCATGTTGAAGCAGTGGGAGCTTAGGAAGTA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
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| 3UTR TCA 90 bp | TCTGTGGATACTCTGGATTTAATAAGTTCTTATAGTGGAGTAGTGTaGTTTATCTTGTCCACCAGCTTGATTGGATTGAGAAGTACCTTC | + |
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Preference number: 1 (lower is better) Translates to: SVDTLDLISSYSGVV*FILSTSLIGLRSTF Trigger: GAAGGTACTTCTCAATCCAATCAAGCTGGTGGACAAGATAAATCACACTACTCCACTATAAGAACTTATTAAATCCAGAGTATCCACAGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168179.8 |
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| 3UTR-3UTR CCA 90 bp | GATGGCTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTCGGAAAGCCTTTTCAAGGTCTaGGCTCCAGCATTCTGCAGA | + |
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Preference number: 2 (lower is better) Translates to: DGCEPPCGCWDLNSGPSESLFKV*APAFCR Trigger: TCTGCAGAATGCTGGAGCCCAGACCTTGAAAAGGCT...TTCCGAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAGCCATC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097855.4 |
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| 3UTR-3UTR TCA 90 bp | GATGGCTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTCGGAATCCAGCCCCATCATTTaGAATCTTCTCATCCCAGAG | + |
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Preference number: 2 (lower is better) Translates to: DGCEPPCGCWDLNSGPSESSPII*NLLIPE Trigger: CTCTGGGATGAGAAGATTTCAAATGATGGGGCTGGA...TTCCGAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAGCCATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097855.4 |
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| 3UTR-3UTR TCA 90 bp | AGAAGACCCACCCTGAATATGAACAACACCATTTTATGGACTGGGGAATTGGACAGCTTGACGCCAGTCTaGGCAACAGAGTGGGGGAGG | + |
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Preference number: 2 (lower is better) Translates to: RRPTLNMNNTILWTGELDSLTPV*ATEWGR Trigger: CCTCCCCCACTCTGTTGCTCAGACTGGCGTCAAGCT...GTCCAATTCCCCAGTCCATAAAATGGTGTTGTTCATATTCAGGGTGGGTCTTCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
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| 3UTR-3UTR TCA 90 bp | AGAAGACCCACCCTGAATATGAACAACACCATTTTATGGACTGGGGAATTGGACAGGCCTCACCCTCTCTaGCTCCCACTCAAATACCAG | + |
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Preference number: 2 (lower is better) Translates to: RRPTLNMNNTILWTGELDRPHPL*LPLKYQ Trigger: CTGGTATTTGAGTGGGAGTCAGAGAGGGTGAGGCCT...GTCCAATTCCCCAGTCCATAAAATGGTGTTGTTCATATTCAGGGTGGGTCTTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
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| 3UTR-3UTR GCA 90 bp | GAAAGTTATAGCTTGCCCCTGCTTCTGGACTCTGCTTTCTGGACGTCTGTAACAAGGGTTAGAGTGAAATaGAAGGAGAGTCTGGGGCAC | + |
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Preference number: 2 (lower is better) Translates to: ESYSLPLLLDSAFWTSVTRVRVK*KESLGH Trigger: GTGCCCCAGACTCTCCTTGCATTTCACTCTAACCCT...TGTTACAGACGTCCAGAAAGCAGAGTCCAGAAGCAGGGGCAAGCTATAACTTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
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| 3UTR-3UTR CCA 90 bp | AGAAATCAGCCAGAGCCCATACAAGTCTCCTCTTTTTGGAGAGCCTTCTTTCATCCGTCCCTTTGCATATaGGTCATGGCACCTGCCTCA | + |
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Preference number: 2 (lower is better) Translates to: RNQPEPIQVSSFWRAFFHPSLCI*VMAPAS Trigger: TGAGGCAGGTGCCATGACCCATATGCAAAGGGACGG...ATGAAAGAAGGCTCTCCAAAAAGAGGAGACTTGTATGGGCTCTGGCTGATTTCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
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| 3UTR-3UTR TCA 90 bp | GAAAGTTATAGCTTGCCCCTGCTTCTGGACTCTGCTTTCTGGACGTCTGTAACATCACCGACTGCACACTaGGATTGGAAAACACTGTCA | + |
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Preference number: 2 (lower is better) Translates to: ESYSLPLLLDSAFWTSVTSPTAH*DWKTLS Trigger: TGACAGTGTTTTCCAATCTCAGTGTGCAGTCGGTGA...TGTTACAGACGTCCAGAAAGCAGAGTCCAGAAGCAGGGGCAAGCTATAACTTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
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| 3UTR CAA 90 bp | GCTCGTTTGTCTCTTTCATTAGGAGCATTAATAGCCCGAACATCTTaGCACACCCTCTTTGGAAGCTGGGGCTGTAGCAGACTGAAAATC | + |
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Preference number: 2 (lower is better) Translates to: ARLSLSLGALIARTS*HTLFGSWGCSRLKI Trigger: GATTTTCAGTCTGCTACAGCCCCAGCTTCCAAAGAGGGTGTGCAAAGATGTTCGGGCTATTAATGCTCCTAATGAAAGAGACAAACGAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
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| 3UTR-3UTR TCA 90 bp | CAGAAATATCCCTCACAGGGTCATGTTTTGTGTATAGCAAAATATGTCCAGACTATGCTCACTTCCTGCTaGCAGTCCCAGGCCTCTGGT | + |
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Preference number: 2 (lower is better) Translates to: QKYPSQGHVLCIAKYVQTMLTSC*QSQASG Trigger: ACCAGAGGCCTGGGACTGTCAGCAGGAAGTGAGCAT...AGTCTGGACATATTTTGCTATACACAAAACATGACCCTGTGAGGGATATTTCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
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| 3UTR-3UTR TCA 90 bp | GAAAGTTATAGCTTGCCCCTGCTTCTGGACTCTGCTTTCTGGACGTCTGTAACAGGCATATTTCATATTTaGGGCCAGCCTGATCTACAG | + |
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Preference number: 2 (lower is better) Translates to: ESYSLPLLLDSAFWTSVTGIFHI*GQPDLQ Trigger: CTGTAGATCAGGCTGGCCTCAAATATGAAATATGCC...TGTTACAGACGTCCAGAAAGCAGAGTCCAGAAGCAGGGGCAAGCTATAACTTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
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| 3UTR-3UTR CCA 90 bp | AGAAATCAGCCAGAGCCCATACAAGTCTCCTCTTTTTGGAGAGCCTTCTTTCATAGCCTTTTCAAGGTCTaGGCTCCAGCATTCTGCAGA | + |
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Preference number: 2 (lower is better) Translates to: RNQPEPIQVSSFWRAFFHSLFKV*APAFCR Trigger: TCTGCAGAATGCTGGAGCCCAGACCTTGAAAAGGCT...ATGAAAGAAGGCTCTCCAAAAAGAGGAGACTTGTATGGGCTCTGGCTGATTTCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000111442.3 ENSMUST00000168179.8 |
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| 3UTR CAA 90 bp | CAGTCAGTGCTCTTAATCGCTGAGCCATCTCTCCAGCCCCATCATTaGAAATCTTCTCATCCCAGAGTTTGGTTTTTACCATGCAGGAAA | + |
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Preference number: 2 (lower is better) Translates to: QSVLLIAEPSLQPHH*KSSHPRVWFLPCRK Trigger: TTTCCTGCATGGTAAAAACCAAACTCTGGGATGAGAAGATTTCAAATGATGGGGCTGGAGAGATGGCTCAGCGATTAAGAGCACTGACTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000097855.4 |
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| 3UTR-3UTR TCA 90 bp | AAAATCAGCATTGTTCCAGACTCTCCTTGGAGGATCTATCCTCTCTCTGGACAACCATGCAGGAAAGACTaGGCTGTCCCATTAACAGAT | + |
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Preference number: 2 (lower is better) Translates to: KISIVPDSPWRIYPLSGQPCRKD*AVPLTD Trigger: ATCTGTTAATGGGACAGCTCAGTCTTTCCTGCATGG...TTGTCCAGAGAGAGGATAGATCCTCCAAGGAGAGTCTGGAACAATGCTGATTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
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| 3UTR-3UTR TCA 90 bp | TTGTCCACCAGCTTGATTGGATTGAGAAGTACCTTCTCATCCCAGAGTTTGGTTCCATGCAGGAAAGACTaGGCTGTCCCATTAACAGAT | + |
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Preference number: 2 (lower is better) Translates to: LSTSLIGLRSTFSSQSLVPCRKD*AVPLTD Trigger: ATCTGTTAATGGGACAGCTCAGTCTTTCCTGCATGG...AACCAAACTCTGGGATGAGAAGGTACTTCTCAATCCAATCAAGCTGGTGGACAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168179.8 |
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| 3UTR CAA 90 bp | AGCATTCTGCAGATCCACCTGAAACCATTATTTCAAAGTGTCAACTaGTATCCTCAACTGGGGCTCTTCCTGTTCTTCAGAAGCAGTGAG | + |
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Preference number: 2 (lower is better) Translates to: SILQIHLKPLFQSVN*YPQLGLFLFFRSSE Trigger: CTCACTGCTTCTGAAGAACAGGAAGAGCCCCAGTTGAGGATACAAGTTGACACTTTGAAATAATGGTTTCAGGTGGATCTGCAGAATGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
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| 3UTR-3UTR CCA 90 bp | CAACCACAGAAATCAGCCAGAGCCCATACAAGTCTCCTCTTTTTGGAGAGCCTTTCTCATCCCAGAGTTTaGTTTTTACCATGCAGGAAA | + |
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Preference number: 2 (lower is better) Translates to: QPQKSARAHTSLLFLESLSHPRV*FLPCRK Trigger: TTTCCTGCATGGTAAAAACCAAACTCTGGGATGAGA...AAGGCTCTCCAAAAAGAGGAGACTTGTATGGGCTCTGGCTGATTTCTGTGGTTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000111442.3 ENSMUST00000168179.8 |
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| 3UTR-3UTR CCA 90 bp | GAAAGTTATAGCTTGCCCCTGCTTCTGGACTCTGCTTTCTGGACGTCTGTAACATCTGGCTTCAAACTATaGAAACAGCCCTCATCTAAA | + |
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Preference number: 2 (lower is better) Translates to: ESYSLPLLLDSAFWTSVTSGFKL*KQPSSK Trigger: TTTAGATGAGGGCTGTTTCCATAGTTTGAAGCCAGA...TGTTACAGACGTCCAGAAAGCAGAGTCCAGAAGCAGGGGCAAGCTATAACTTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
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| 3UTR-3UTR TCA 90 bp | AGAGGAAGTTCCAGGGCAGCCTGGACTACAGAAGAAACTCTCAAAATAGACAAATGTAATCTCAGAACTTaGGATGTAAGCAGGAGGATC | + |
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Preference number: 2 (lower is better) Translates to: RGSSRAAWTTEETLKIDKCNLRT*DVSRRI Trigger: GATCCTCCTGCTTACATCTCAAGTTCTGAGATTACA...TTTGTCTATTTTGAGAGTTTCTTCTGTAGTCCAGGCTGCCCTGGAACTTCCTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
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| 3UTR-3UTR CCA 90 bp | AGAAGACCCACCCTGAATATGAACAACACCATTTTATGGACTGGGGAATTGGACGATCTATCCTCTCTCTaGACAAGAAACATGTGCACA | + |
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Preference number: 2 (lower is better) Translates to: RRPTLNMNNTILWTGELDDLSSL*TRNMCT Trigger: TGTGCACATGTTTCTTGTCCAGAGAGAGGATAGATC...GTCCAATTCCCCAGTCCATAAAATGGTGTTGTTCATATTCAGGGTGGGTCTTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
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| 3UTR-3UTR CCA 90 bp | CAGAAATATCCCTCACAGGGTCATGTTTTGTGTATAGCAAAATATGTCCAGACTAGTTCCAGGGCAGCCTaGACTACAGAAGAAACTCTC | + |
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Preference number: 2 (lower is better) Translates to: QKYPSQGHVLCIAKYVQTSSRAA*TTEETL Trigger: GAGAGTTTCTTCTGTAGTCCAGGCTGCCCTGGAACT...AGTCTGGACATATTTTGCTATACACAAAACATGACCCTGTGAGGGATATTTCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
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| 3UTR-3UTR TCA 90 bp | TCGTTTGTCTCTTTCATTAGGAGCATTAATAGCCCGAACATCTTTGCACACCCTTTCACAATCGGAGCTTaGGAAAAACCAGTAACACCT | + |
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Preference number: 2 (lower is better) Translates to: SFVSFIRSINSPNIFAHPFTIGA*EKPVTP Trigger: AGGTGTTACTGGTTTTTCTCAAGCTCCGATTGTGAA...AGGGTGTGCAAAGATGTTCGGGCTATTAATGCTCCTAATGAAAGAGACAAACGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
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| 3UTR-3UTR TCA 90 bp | AAATTCAGTGAAGCCATACTCCTTATTTGTATGATGTGGTCCATGCTGGTTGCCACTGGGGAATTGGACTaGATAAAGAGGAGAAAGAGA | + |
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Preference number: 2 (lower is better) Translates to: KFSEAILLICMMWSMLVATGELD*IKRRKR Trigger: TCTCTTTCTCCTCTTTATTCAGTCCAATTCCCCAGT...GGCAACCAGCATGGACCACATCATACAAATAAGGAGTATGGCTTCACTGAATTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
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| 3UTR-3UTR CCA 90 bp | CTTCAACATGATATTCAGGCCAATATGAATTTTAAGTTCTTACCTTCTCATCCCTACCCTGAGCTGCTCTaGATATGCCTCTGTCCACAC | + |
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Preference number: 2 (lower is better) Translates to: LQHDIQANMNFKFLPSHPYPELL*ICLCPH Trigger: GTGTGGACAGAGGCATATCCAGAGCAGCTCAGGGTA...GGGATGAGAAGGTAAGAACTTAAAATTCATATTGGCCTGAATATCATGTTGAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
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| 3UTR-3UTR TCA 90 bp | AGCCAAAGTAAACTCTTTCCTTCAGTTGTTTTAGCTGAGTACTATGGTCACAGATGCCTGACCAGGTCATaGTCTTCTTCATTCTCCAAA | + |
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Preference number: 2 (lower is better) Translates to: SQSKLFPSVVLAEYYGHRCLTRS*SSSFSK Trigger: TTTGGAGAATGAAGAAGATCATGACCTGGTCAGGCA...TCTGTGACCATAGTACTCAGCTAAAACAACTGAAGGAAAGAGTTTACTTTGGCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
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| 3UTR CAA 90 bp | AGTTACTCTCTGAATGCTAACTTTTCAACTTTTTCCGAATTAACCTaGCCTGACCAGGTCATGATCTTCTTCATTCTCCAAACCCTCACA | + |
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Preference number: 2 (lower is better) Translates to: SYSLNANFSTFSELT*PDQVMIFFILQTLT Trigger: TGTGAGGGTTTGGAGAATGAAGAAGATCATGACCTGGTCAGGCAAGGTTAATTCGGAAAAAGTTGAAAAGTTAGCATTCAGAGAGTAACT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
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| 3UTR CAA 90 bp | CAACTTATATCTGTCTTTCAGAAATATCCCTCACAGGGTCATGTTTaGTGTATAGCAAAATATGTCCAGACTGGCACTATTGGTAAGCCC | + |
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Preference number: 2 (lower is better) Translates to: QLISVFQKYPSQGHV*CIAKYVQTGTIGKP Trigger: GGGCTTACCAATAGTGCCAGTCTGGACATATTTTGCTATACACAAAACATGACCCTGTGAGGGATATTTCTGAAAGACAGATATAAGTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
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| 3UTR-3UTR GCA 90 bp | TCGTTTGTCTCTTTCATTAGGAGCATTAATAGCCCGAACATCTTTGCACACCCTTTAGAGAAAAATTGGTaGTCTTTCCTCATCTCTTGG | + |
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Preference number: 2 (lower is better) Translates to: SFVSFIRSINSPNIFAHPLEKNW*SFLISW Trigger: CCAAGAGATGAGGAAAGAGCACCAATTTTTCTCTAA...AGGGTGTGCAAAGATGTTCGGGCTATTAATGCTCCTAATGAAAGAGACAAACGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
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| 3UTR CAA 90 bp | AATCCCAGTGTTATAGAATTTCCATTACTGAAATTATTAACACACTaGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGGC | + |
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Preference number: 2 (lower is better) Translates to: NPSVIEFPLLKLLTH*REREREREREREKG Trigger: GCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAAGTGTGTTAATAATTTCAGTAATGGAAATTCTATAACACTGGGATT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
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| 3UTR-3UTR GCA 90 bp | CAGAAATATCCCTCACAGGGTCATGTTTTGTGTATAGCAAAATATGTCCAGACTTTCCTACTCCCAAGCTaGATAGAAAAACTACGTGAT | + |
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Preference number: 2 (lower is better) Translates to: QKYPSQGHVLCIAKYVQTFLLPS*IEKLRD Trigger: ATCACGTAGTTTTTCTATGCAGCTTGGGAGTAGGAA...AGTCTGGACATATTTTGCTATACACAAAACATGACCCTGTGAGGGATATTTCTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
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| 3UTR-3UTR GCA 90 bp | CAGAAATATCCCTCACAGGGTCATGTTTTGTGTATAGCAAAATATGTCCAGACTTCAAAGAAAGCCACCTaGCTTTCAACTATATTGGAA | + |
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Preference number: 2 (lower is better) Translates to: QKYPSQGHVLCIAKYVQTSKKAT*LSTILE Trigger: TTCCAATATAGTTGAAAGGCAGGTGGCTTTCTTTGA...AGTCTGGACATATTTTGCTATACACAAAACATGACCCTGTGAGGGATATTTCTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
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| 3UTR-3UTR CCA 90 bp | AGCCAAAGTAAACTCTTTCCTTCAGTTGTTTTAGCTGAGTACTATGGTCACAGATTAAACAAGTATTATTaGGGGCGTTCTCCAAAACAA | + |
|
Preference number: 2 (lower is better) Translates to: SQSKLFPSVVLAEYYGHRLNKYY*GRSPKQ Trigger: TTGTTTTGGAGAACGCCCCCAATAATACTTGTTTAA...TCTGTGACCATAGTACTCAGCTAAAACAACTGAAGGAAAGAGTTTACTTTGGCT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
||
| 3UTR TCA 72 bp | AGGCATATTTACAGCCGCCTTTCAGGAACCCAGCGGTaGGACACGTCATCTCTAGGCCACAGCATCGGCCCT | + |
|
Preference number: 3 (lower is better) Translates to: RHIYSRLSGTQR*DTSSLGHSIGP Trigger: AGGGCCGATGCTGTGGCCTAGAGATGACGTGTCTCACCGCTGGGTTCCTGAAAGGCGGCTGTAAATATGCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
||
| 3UTR CCA 72 bp | GCCACAGCATCGGCCCTGTGTCCGTCCCTTTGCATATaGGTCATGGCACCTGCCTCAAGTCTCTTTGTGCAT | + |
|
Preference number: 3 (lower is better) Translates to: ATASALCPSLCI*VMAPASSLFVH Trigger: ATGCACAAAGAGACTTGAGGCAGGTGCCATGACCCATATGCAAAGGGACGGACACAGGGCCGATGCTGTGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
||
| 3UTR GCA 72 bp | CCTGTGTCCGTCCCTTTGCATATGGGTCATGGCACCTaGCTCAAGTCTCTTTGTGCATATTTCCCGGCCCTG | + |
|
Preference number: 3 (lower is better) Translates to: PVSVPLHMGHGT*LKSLCAYFPAL Trigger: CAGGGCCGGGAAATATGCACAAAGAGACTTGAGGCAGGTGCCATGACCCATATGCAAAGGGACGGACACAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
||
| 3UTR GCA 72 bp | AGAAGGTTTTGGCTCTGGGATCACCAATGCCACCCTTaGTGCCCTTCTCAGGGAACTGTGATACTAGGCTGG | + |
|
Preference number: 3 (lower is better) Translates to: RRFWLWDHQCHP*CPSQGTVILGW Trigger: CCAGCCTAGTATCACAGTTCCCTGAGAAGGGCAGCAAGGGTGGCATTGGTGATCCCAGAGCCAAAACCTTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
||
| 3UTR CCA 72 bp | CATCGGCCCTGTGTCCGTCCCTTTGCATATGGGTCATaGCACCTGCCTCAAGTCTCTTTGTGCATATTTCCC | + |
|
Preference number: 3 (lower is better) Translates to: HRPCVRPFAYGS*HLPQVSLCIFP Trigger: GGGAAATATGCACAAAGAGACTTGAGGCAGGTGCCATGACCCATATGCAAAGGGACGGACACAGGGCCGATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
||
| 3UTR TCA 72 bp | TGCACACCCTCTTTGGAAGCTGGGGCTGTAGCAGACTaGAAATCAGCATTGTTCCAGACTCTCCTTGGAGGA | + |
|
Preference number: 3 (lower is better) Translates to: CTPSLEAGAVAD*KSALFQTLLGG Trigger: TCCTCCAAGGAGAGTCTGGAACAATGCTGATTTTCAGTCTGCTACAGCCCCAGCTTCCAAAGAGGGTGTGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
||
| 3UTR GCA 72 bp | GATCCCATTATAGATGGCTGTGAGCCACCATGTGGTTaGTGGGATTTGAACTCAGGACCTTCGGAAGAGCAG | + |
|
Preference number: 3 (lower is better) Translates to: DPIIDGCEPPCG*WDLNSGPSEEQ Trigger: CTGCTCTTCCGAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAGCCATCTATAATGGGATC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097855.4 |
||
| 3UTR TCA 72 bp | AGCAATTTGGAAGCAGAGGCGGGCATATTTCATATTTaGGGCCAGCCTGATCTACAGAGGAAGTTCCAGGGC | + |
|
Preference number: 3 (lower is better) Translates to: SNLEAEAGIFHI*GQPDLQRKFQG Trigger: GCCCTGGAACTTCCTCTGTAGATCAGGCTGGCCTCAAATATGAAATATGCCCGCCTCTGCTTCCAAATTGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
||
| 3UTR GCA 72 bp | GAAGGCACTAGGGATGATCCTTTGAAAGTTATAGCTTaGCCCTGCTTCTGGACTCTGCTTTCTGGACGTCTG | + |
|
Preference number: 3 (lower is better) Translates to: EGTRDDPLKVIA*PCFWTLLSGRL Trigger: CAGACGTCCAGAAAGCAGAGTCCAGAAGCAGGGGCAAGCTATAACTTTCAAAGGATCATCCCTAGTGCCTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
||
| 3UTR GCA 72 bp | CCAAAAGTAAGAAGGTTTTGGCTCTGGGATCACCAATaGCACCCTTGCTGCCCTTCTCAGGGAACTGTGATA | + |
|
Preference number: 3 (lower is better) Translates to: PKVRRFWLWDHQ*HPCCPSQGTVI Trigger: TATCACAGTTCCCTGAGAAGGGCAGCAAGGGTGGCATTGGTGATCCCAGAGCCAAAACCTTCTTACTTTTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
||
| 3UTR CCA 72 bp | GCAAATGCTCACTTCCTGCTGACAGTCCCAGGCCTCTaGTTTCACAATCGGAGCTTGAGAAAAACCAGTAAC | + |
|
Preference number: 3 (lower is better) Translates to: ANAHFLLTVPGL*FHNRSLRKTSN Trigger: GTTACTGGTTTTTCTCAAGCTCCGATTGTGAAACCAGAGGCCTGGGACTGTCAGCAGGAAGTGAGCATTTGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
||
| 3UTR-3UTR CAA 90 bp | GATGGCTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTCGGAATTCTCATCCCAGAGTTaGGTTTTTACCATGCAGGAA | + |
|
Preference number: 3 (lower is better) Translates to: DGCEPPCGCWDLNSGPSEFSSQS*VFTMQE Trigger: TTCCTGCATGGTAAAAACCAAACTCTGGGATGAGAA...TTCCGAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAGCCATC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000097855.4 |
||
| 3UTR TCA 72 bp | GAACACTGCAAACACTTGGGATATGCAGGGTTAGAGTaGAATGCAAGGAGAGTCTGGGGCACTTCATGCATG | + |
|
Preference number: 3 (lower is better) Translates to: EHCKHLGYAGLE*NARRVWGTSCM Trigger: CATGCATGAAGTGCCCCAGACTCTCCTTGCATTTCACTCTAACCCTGCATATCCCAAGTGTTTGCAGTGTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
||
| 3UTR CCA 72 bp | ATAGCCCGAACATCTTTGCACACCCTCTTTGGAAGCTaGGGCTGTAGCAGACTGAAAATCAGCATTGTTCCA | + |
|
Preference number: 3 (lower is better) Translates to: IARTSLHTLFGS*GCSRLKISIVP Trigger: TGGAACAATGCTGATTTTCAGTCTGCTACAGCCCCAGCTTCCAAAGAGGGTGTGCAAAGATGTTCGGGCTAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
||
| 3UTR GCA 72 bp | CTGCAAACACTTGGGATATGCAGGGTTAGAGTGAAATaGAAGGAGAGTCTGGGGCACTTCATGCATGTGAAA | + |
|
Preference number: 3 (lower is better) Translates to: LQTLGICRVRVK*KESLGHFMHVK Trigger: TTTCACATGCATGAAGTGCCCCAGACTCTCCTTGCATTTCACTCTAACCCTGCATATCCCAAGTGTTTGCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
||
| 3UTR CCA 72 bp | ACAGTTAAATTGCCAAAAGTAAGAAGGTTTTGGCTCTaGGATCACCAATGCCACCCTTGCTGCCCTTCTCAG | + |
|
Preference number: 3 (lower is better) Translates to: TVKLPKVRRFWL*DHQCHPCCPSQ Trigger: CTGAGAAGGGCAGCAAGGGTGGCATTGGTGATCCCAGAGCCAAAACCTTCTTACTTTTGGCAATTTAACTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
||
| 3UTR-3UTR CAA 90 bp | ATCAACCACAGAAATCAGCCAGAGCCCATACAAGTCTCCTCTTTTTGGAGAGCCTTCTCATCCCAGAGTTaGGTTTTTACCATGCAGGAA | + |
|
Preference number: 3 (lower is better) Translates to: INHRNQPEPIQVSSFWRAFSSQS*VFTMQE Trigger: TTCCTGCATGGTAAAAACCAAACTCTGGGATGAGAA...GGCTCTCCAAAAAGAGGAGACTTGTATGGGCTCTGGCTGATTTCTGTGGTTGAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000111442.3 ENSMUST00000168179.8 |
||
| 3UTR-3UTR CAA 90 bp | AGCCAAAGTAAACTCTTTCCTTCAGTTGTTTTAGCTGAGTACTATGGTCACAGACTTTGCACACCCTCTTaGGAAGCTGGGGCTGTAGCA | + |
|
Preference number: 3 (lower is better) Translates to: SQSKLFPSVVLAEYYGHRLCTPS*EAGAVA Trigger: TGCTACAGCCCCAGCTTCCAAAGAGGGTGTGCAAAG...TCTGTGACCATAGTACTCAGCTAAAACAACTGAAGGAAAGAGTTTACTTTGGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
||
| 3UTR CCA 72 bp | TGTTCCAGACTCTCCTTGGAGGATCTATCCTCTCTCTaGACAAGAAACATGTGCACAGAAATCCCAGTGTTA | + |
|
Preference number: 3 (lower is better) Translates to: CSRLSLEDLSSL*TRNMCTEIPVL Trigger: TAACACTGGGATTTCTGTGCACATGTTTCTTGTCCAGAGAGAGGATAGATCCTCCAAGGAGAGTCTGGAACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
||
| 3UTR TCA 72 bp | TTCAAGGTCTGGGCTCCAGCATTCTGCAGATCCACCTaGAACCATTATTTCAAAGTGTCAACTTGTATCCTC | + |
|
Preference number: 3 (lower is better) Translates to: FKVWAPAFCRST*NHYFKVSTCIL Trigger: GAGGATACAAGTTGACACTTTGAAATAATGGTTTCAGGTGGATCTGCAGAATGCTGGAGCCCAGACCTTGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
||
| 3UTR CCA 72 bp | AAACCTCTGAAATGGCCAAACTTAGCATTGTTTGTGTaGAGAAGCCATCTGGAAAGTGTGACTGAAGTCCTC | + |
|
Preference number: 3 (lower is better) Translates to: KPLKWPNLALFV*RSHLESVTEVL Trigger: GAGGACTTCAGTCACACTTTCCAGATGGCTTCTCCACACAAACAATGCTAAGTTTGGCCATTTCAGAGGTTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
||
| 3UTR CCA 72 bp | AGCAGACTGAAAATCAGCATTGTTCCAGACTCTCCTTaGAGGATCTATCCTCTCTCTGGACAAGAAACATGT | + |
|
Preference number: 3 (lower is better) Translates to: SRLKISIVPDSP*RIYPLSGQETC Trigger: ACATGTTTCTTGTCCAGAGAGAGGATAGATCCTCCAAGGAGAGTCTGGAACAATGCTGATTTTCAGTCTGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
||
| 3UTR TCA 72 bp | CTGGATATGTTCACATATACTTGTAATCTCAGAACTTaGGATGTAAGCAGGAGGATCGTGAGCTTGACGCCA | + |
|
Preference number: 3 (lower is better) Translates to: LDMFTYTCNLRT*DVSRRIVSLTP Trigger: TGGCGTCAAGCTCACGATCCTCCTGCTTACATCTCAAGTTCTGAGATTACAAGTATATGTGAACATATCCAG 43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
||
| 3UTR TCA 72 bp | ACCCACTCGTTCAATGGCTTATCACCGACTGCACACTaGGATTGGAAAACACTGTCAAAACTTGCTAATTCT | + |
|
Preference number: 3 (lower is better) Translates to: THSFNGLSPTAH*DWKTLSKLANS Trigger: AGAATTAGCAAGTTTTGACAGTGTTTTCCAATCTCAGTGTGCAGTCGGTGATAAGCCATTGAACGAGTGGGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
||
| 3UTR CCA 72 bp | TGGAGTAGTGTGATTTATCTTGTCCACCAGCTTGATTaGATTGAGAAGTACCTTCTCATCCCAGAGTTTGGT | + |
|
Preference number: 3 (lower is better) Translates to: WSSVIYLVHQLD*IEKYLLIPEFG Trigger: ACCAAACTCTGGGATGAGAAGGTACTTCTCAATCCAATCAAGCTGGTGGACAAGATAAATCACACTACTCCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168179.8 |
||
| 3UTR-3UTR CAA 90 bp | TCGTTTGTCTCTTTCATTAGGAGCATTAATAGCCCGAACATCTTTGCACACCCTTTCTCATCCCAGAGTTaGGTTTTTACCATGCAGGAA | + |
|
Preference number: 3 (lower is better) Translates to: SFVSFIRSINSPNIFAHPFSSQS*VFTMQE Trigger: TTCCTGCATGGTAAAAACCAAACTCTGGGATGAGAA...AGGGTGTGCAAAGATGTTCGGGCTATTAATGCTCCTAATGAAAGAGACAAACGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
||
| 3UTR TCA 72 bp | GAACACAGAGAGCAGTCGTTATACTCTCATGGCTTCTaGGGGGCACAACAACTTGTTTCTAAAATGAATCTT | + |
|
Preference number: 3 (lower is better) Translates to: EHREQSLYSHGF*GAQQLVSKMNL Trigger: AAGATTCATTTTAGAAACAAGTTGTTGTGCCCCTCAGAAGCCATGAGAGTATAACGACTGCTCTCTGTGTTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
||
| 3UTR TCA 72 bp | ATGAACAACACCATTTTATGGACTGGGGAATTGGACTaGATAAAGAGGAGAAAGAGAGCTGACACCAGCATT | + |
|
Preference number: 3 (lower is better) Translates to: MNNTILWTGELD*IKRRKRADTSI Trigger: AATGCTGGTGTCAGCTCTCTTTCTCCTCTTTATTCAGTCCAATTCCCCAGTCCATAAAATGGTGTTGTTCAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
||
| 3UTR GCA 72 bp | CATACTCCTTATTTGTATGATGTGGTCCATGCTGGTTaGCAAACATCTTTGTTATTTGCTAGTTGGCCACTG | + |
|
Preference number: 3 (lower is better) Translates to: HTPYLYDVVHAG*QTSLLFASWPL Trigger: CAGTGGCCAACTAGCAAATAACAAAGATGTTTGGCAACCAGCATGGACCACATCATACAAATAAGGAGTATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
||
| 3UTR CCA 72 bp | AACCATTATTTCAAAGTGTCAACTTGTATCCTCAACTaGGGCTCTTCCTGTTCTTCAGAAGCAGTGAGAAAG | + |
|
Preference number: 3 (lower is better) Translates to: NHYFKVSTCILN*GSSCSSEAVRK Trigger: CTTTCTCACTGCTTCTGAAGAACAGGAAGAGCCCCAGTTGAGGATACAAGTTGACACTTTGAAATAATGGTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
||
| 3UTR-3UTR CAA 90 bp | AAAATCAGCATTGTTCCAGACTCTCCTTGGAGGATCTATCCTCTCTCTGGACAAATTCTTCCTTTGTATTaGCTGTTTCCTCAATGGGTA | + |
|
Preference number: 3 (lower is better) Translates to: KISIVPDSPWRIYPLSGQILPLY*LFPQWV Trigger: TACCCATTGAGGAAACAGCAAATACAAAGGAAGAAT...TTGTCCAGAGAGAGGATAGATCCTCCAAGGAGAGTCTGGAACAATGCTGATTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
||
| 3UTR TCA 72 bp | CATGATCTTCTTCATTCTCCAAACCCTCACACTGTGTaGCAAAGCTCAGATTCCAAACATCATATCCAGTAT | + |
|
Preference number: 3 (lower is better) Translates to: HDLLHSPNPHTV*QSSDSKHHIQY Trigger: ATACTGGATATGATGTTTGGAATCTGAGCTTTGTCACACAGTGTGAGGGTTTGGAGAATGAAGAAGATCATG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
||
| 3UTR TCA 72 bp | TTTTGGAGAGCCTTCTTTCATGTGGCTATGGTTAGCTaGGAACACTGTAAAAGGGCTTTCAATCATGTTTCT | + |
|
Preference number: 3 (lower is better) Translates to: FWRAFFHVAMVS*EHCKRAFNHVS Trigger: AGAAACATGATTGAAAGCCCTTTTACAGTGTTCTCAGCTAACCATAGCCACATGAAAGAAGGCTCTCCAAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111442.3 ENSMUST00000168179.8 |
||
| 3UTR GCA 72 bp | CATGATGTTAGCTGTTCTGCTCTAACACTATCTTTCTaGCATGATGGACTAACTTCTGAATCTCTGAACCAA | + |
|
Preference number: 3 (lower is better) Translates to: HDVSCSALTLSF*HDGLTSESLNQ Trigger: TTGGTTCAGAGATTCAGAAGTTAGTCCATCATGGCAGAAAGATAGTGTTAGAGCAGAACAGCTAACATCATG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
||
| 3UTR CCA 72 bp | CTCTGCTTTCTGGACGTCTGTAACATGAACAGTCTCTaGTATACATACCCATGTACTTTGATACAATGCTAT | + |
|
Preference number: 3 (lower is better) Translates to: LCFLDVCNMNSL*YTYPCTLIQCY Trigger: ATAGCATTGTATCAAAGTACATGGGTATGTATACCAGAGACTGTTCATGTTACAGACGTCCAGAAAGCAGAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
||
| 3UTR TCA 72 bp | AGCTCCCACTGCTTCAACATGATATTCAGGCCAATATaGATTTTAAGTTCTTACCTTCTCATCCCAGAGTTT | + |
|
Preference number: 3 (lower is better) Translates to: SSHCFNMIFRPI*ILSSYLLIPEF Trigger: AAACTCTGGGATGAGAAGGTAAGAACTTAAAATTCATATTGGCCTGAATATCATGTTGAAGCAGTGGGAGCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
||
| 3UTR-3UTR CAA 90 bp | AGCCAAAGTAAACTCTTTCCTTCAGTTGTTTTAGCTGAGTACTATGGTCACAGAAAATTATTAACACACTaGAGAGAGAGAGAGAGAGAG | + |
|
Preference number: 3 (lower is better) Translates to: SQSKLFPSVVLAEYYGHRKLLTH*RERERE Trigger: CTCTCTCTCTCTCTCTCTCAAGTGTGTTAATAATTT...TCTGTGACCATAGTACTCAGCTAAAACAACTGAAGGAAAGAGTTTACTTTGGCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
||
| 3UTR-3UTR CAA 90 bp | AGCCAAAGTAAACTCTTTCCTTCAGTTGTTTTAGCTGAGTACTATGGTCACAGATTCTTTAAGCTGCCTTaGTCAGATATTTTGTCACAG | + |
|
Preference number: 3 (lower is better) Translates to: SQSKLFPSVVLAEYYGHRFFKLP*SDILSQ Trigger: CTGTGACAAAATATCTGACAAAGGCAGCTTAAAGAA...TCTGTGACCATAGTACTCAGCTAAAACAACTGAAGGAAAGAGTTTACTTTGGCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
||
| 3UTR-3UTR CAA 90 bp | CAGAAATATCCCTCACAGGGTCATGTTTTGTGTATAGCAAAATATGTCCAGACTAAACACTGTCAAAACTaGCTAATTCTTGAGTCCTCT | + |
|
Preference number: 3 (lower is better) Translates to: QKYPSQGHVLCIAKYVQTKHCQN*LILESS Trigger: AGAGGACTCAAGAATTAGCAAGTTTTGACAGTGTTT...AGTCTGGACATATTTTGCTATACACAAAACATGACCCTGTGAGGGATATTTCTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
||
| 3UTR-3UTR CAA 90 bp | CTTCAACATGATATTCAGGCCAATATGAATTTTAAGTTCTTACCTTCTCATCCCACAGGTACATGTGGGTaGATTAAAGAGAGTTGTTCA | + |
|
Preference number: 3 (lower is better) Translates to: LQHDIQANMNFKFLPSHPTGTCG*IKESCS Trigger: TGAACAACTCTCTTTAATCAACCCACATGTACCTGT...GGGATGAGAAGGTAAGAACTTAAAATTCATATTGGCCTGAATATCATGTTGAAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
||
| 3UTR GCA 72 bp | AAACTACCAACAACCGTAAAACTTTCTTCTTTAAGCTaGCTTTGTCAGATATTTTGTCACAGCCACAAGATA | + |
|
Preference number: 3 (lower is better) Translates to: KLPTTVKLSSLS*LCQIFCHSHKI Trigger: TATCTTGTGGCTGTGACAAAATATCTGACAAAGGCAGCTTAAAGAAGAAAGTTTTACGGTTGTTGGTAGTTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
||
| 3UTR GCA 72 bp | TACACTCTTTCAAAGCAACACTGCTCCGAAACTGCATaGTTGGACATAACATCTTTAAGAACAAATTATTAT | + |
|
Preference number: 3 (lower is better) Translates to: YTLSKQHCSETA*LDITSLRTNYY Trigger: ATAATAATTTGTTCTTAAAGATGTTATGTCCAAGCATGCAGTTTCGGAGCAGTGTTGCTTTGAAAGAGTGTA 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
||
| 3UTR GCA 72 bp | AATTTACACTCTTTCAAAGCAACACTGCTCCGAAACTaGATGCTTGGACATAACATCTTTAAGAACAAATTA | + |
|
Preference number: 3 (lower is better) Translates to: NLHSFKATLLRN*MLGHNIFKNKL Trigger: TAATTTGTTCTTAAAGATGTTATGTCCAAGCATGCAGTTTCGGAGCAGTGTTGCTTTGAAAGAGTGTAAATT 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
||
| CDS-3UTR CCA 90 bp | GAAAGTTATAGCTTGCCCCTGCTTCTGGACTCTGCTTTCTGGACGTCTGTAACATACCAGGGAGTAGAGTaGGGGCAGGAGCTGAGCCGC | + |
|
Preference number: 4 (lower is better) Translates to: ESYSLPLLLDSAFWTSVTYQGVE*GQELSR Trigger: GCGGCTCAGCTCCTGCCCCCACTCTACTCCCTGGTA...TGTTACAGACGTCCAGAAAGCAGAGTCCAGAAGCAGGGGCAAGCTATAACTTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
||
| 3UTR CAA 72 bp | AAGAAGGTTTTGGCTCTGGGATCACCAATGCCACCCTaGCTGCCCTTCTCAGGGAACTGTGATACTAGGCTG | + |
|
Preference number: 4 (lower is better) Translates to: KKVLALGSPMPP*LPFSGNCDTRL Trigger: CAGCCTAGTATCACAGTTCCCTGAGAAGGGCAGCAAGGGTGGCATTGGTGATCCCAGAGCCAAAACCTTCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
||
| CDS-3UTR TCA 90 bp | TCCCGAGCCTTTTCAAGGTCTGGGCTCCAGCATTCTGCAGATCCACCTGAAACCGGATCAGGCTCAAGATaGCCATCTTTAATGTTTGGA | + |
|
Preference number: 4 (lower is better) Translates to: SRAFSRSGLQHSADPPETGSGSR*PSLMFG Trigger: TCCAAACATTAAAGATGGTCATCTTGAGCCTGATCC...GGTTTCAGGTGGATCTGCAGAATGCTGGAGCCCAGACCTTGAAAAGGCTCGGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
||
| CDS-3UTR TCA 90 bp | TGCATATTTCCCGGCCCTGATAAAAGACTCGTTCTCCCTGCTCCTCCACCCCAAGTCTTGCTGGAAAATTaGACACCGTTTGCAAAAGCG | + |
|
Preference number: 4 (lower is better) Translates to: CIFPGPDKRLVLPAPPPQVLLEN*TPFAKA Trigger: CGCTTTTGCAAACGGTGTTCAATTTTCCAGCAAGAC...TTGGGGTGGAGGAGCAGGGAGAACGAGTCTTTTATCAGGGCCGGGAAATATGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
||
| CDS-3UTR GCA 90 bp | TCCCGAGCCTTTTCAAGGTCTGGGCTCCAGCATTCTGCAGATCCACCTGAAACCCGATCAGGATTGTCTTaGTGGAAAATTGAACACCGT | + |
|
Preference number: 4 (lower is better) Translates to: SRAFSRSGLQHSADPPETRSGLS*WKIEHR Trigger: ACGGTGTTCAATTTTCCAGCAAGACAATCCTGATCG...GGTTTCAGGTGGATCTGCAGAATGCTGGAGCCCAGACCTTGAAAAGGCTCGGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
||
| 3UTR CAA 72 bp | AAGTCTGGCTGGCTTGAAGGCACTAGGGATGATCCTTaGAAAGTTATAGCTTGCCCCTGCTTCTGGACTCTG | + |
|
Preference number: 4 (lower is better) Translates to: KSGWLEGTRDDP*KVIACPCFWTL Trigger: CAGAGTCCAGAAGCAGGGGCAAGCTATAACTTTCAAAGGATCATCCCTAGTGCCTTCAAGCCAGCCAGACTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
||
| CDS-3UTR TCA 90 bp | CAACCACAGAAATCAGCCAGAGCCCATACAAGTCTCCTCTTTTTGGAGAGCCTTGGTGTGGAGAATTCCTaGGTAGCAGATGACCATGAC | + |
|
Preference number: 4 (lower is better) Translates to: QPQKSARAHTSLLFLESLGVENS*VADDHD Trigger: GTCATGGTCATCTGCTACTCAGGAATTCTCCACACC...AAGGCTCTCCAAAAAGAGGAGACTTGTATGGGCTCTGGCTGATTTCTGTGGTTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
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| CDS-3UTR TCA 90 bp | CAACCACAGAAATCAGCCAGAGCCCATACAAGTCTCCTCTTTTTGGAGAGCCTTGGATCGGGTATAGACTaGGCTTGCACGATCAGGATT | + |
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Preference number: 4 (lower is better) Translates to: QPQKSARAHTSLLFLESLGSGID*ACTIRI Trigger: AATCCTGATCGTGCAAGCTCAGTCTATACCCGATCC...AAGGCTCTCCAAAAAGAGGAGACTTGTATGGGCTCTGGCTGATTTCTGTGGTTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
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| 3UTR CAA 72 bp | ACTCTACGTTTTATAGGCAGAAGTGGTTCTTCCCTGTaGGCAGTCAGGCACATCCATAGACAGCAAGAAGCG | + |
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Preference number: 4 (lower is better) Translates to: TLRFIGRSGSSL*AVRHIHRQQEA Trigger: CGCTTCTTGCTGTCTATGGATGTGCCTGACTGCCAACAGGGAAGAACCACTTCTGCCTATAAAACGTAGAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
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| CDS-3UTR CCA 90 bp | GAGAAGTACCTTCTCATCCCAGAGTTTGGTTTTTACCATGCAGGAAAGACTGAGTACCCTGAGCTGCTCTaGATATGCCTCTGTCCACAC | + |
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Preference number: 4 (lower is better) Translates to: EKYLLIPEFGFYHAGKTEYPELL*ICLCPH Trigger: GTGTGGACAGAGGCATATCCAGAGCAGCTCAGGGTA...CTCAGTCTTTCCTGCATGGTAAAAACCAAACTCTGGGATGAGAAGGTACTTCTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000168179.8 |
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| CDS-3UTR TCA 90 bp | CAACCACAGAAATCAGCCAGAGCCCATACAAGTCTCCTCTTTTTGGAGAGCCTTGTTCTTCAGAAGCAGTaGGAAAGAGCTGTGTGTCAA | + |
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Preference number: 4 (lower is better) Translates to: QPQKSARAHTSLLFLESLVLQKQ*ERAVCQ Trigger: TTGACACACAGCTCTTTCTCACTGCTTCTGAAGAAC...AAGGCTCTCCAAAAAGAGGAGACTTGTATGGGCTCTGGCTGATTTCTGTGGTTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000168179.8 |
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| 3UTR CAA 72 bp | CCAGCCCCATCATTTGAAATCTTCTCATCCCAGAGTTaGGTTTTTACCATGCAGGAAAGACTGAGCTGTCCC | + |
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Preference number: 4 (lower is better) Translates to: PAPSFEIFSSQS*VFTMQERLSCP Trigger: GGGACAGCTCAGTCTTTCCTGCATGGTAAAAACCAAACTCTGGGATGAGAAGATTTCAAATGATGGGGCTGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000097855.4 |
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| CDS-3UTR TCA 90 bp | CAGAAATATCCCTCACAGGGTCATGTTTTGTGTATAGCAAAATATGTCCAGACTCAGCCACCGCCCAAGTaGCTACACTTGTTATCACCC | + |
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Preference number: 4 (lower is better) Translates to: QKYPSQGHVLCIAKYVQTQPPPK*LHLLSP Trigger: GGGTGATAACAAGTGTAGTCACTTGGGCGGTGGCTG...AGTCTGGACATATTTTGCTATACACAAAACATGACCCTGTGAGGGATATTTCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
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| CDS-3UTR TCA 90 bp | ATCAACCACAGAAATCAGCCAGAGCCCATACAAGTCTCCTCTTTTTGGAGAGCCGTTTGCAAAAGCGTTTaGCCATGTGTTTTCGGAAGA | + |
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Preference number: 4 (lower is better) Translates to: INHRNQPEPIQVSSFWRAVCKSV*PCVFGR Trigger: TCTTCCGAAAACACATGGTCAAACGCTTTTGCAAAC...GGCTCTCCAAAAAGAGGAGACTTGTATGGGCTCTGGCTGATTTCTGTGGTTGAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
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| CDS-3UTR GCA 90 bp | AGAAATCAGCCAGAGCCCATACAAGTCTCCTCTTTTTGGAGAGCCTTCTTTCATGAGCTGCTCTGGATATaGCTCTGTCCACACATAATC | + |
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Preference number: 4 (lower is better) Translates to: RNQPEPIQVSSFWRAFFHELLWI*LCPHII Trigger: GATTATGTGTGGACAGAGGCATATCCAGAGCAGCTC...ATGAAAGAAGGCTCTCCAAAAAGAGGAGACTTGTATGGGCTCTGGCTGATTTCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000168179.8 |
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| CDS-3UTR CCA 90 bp | CAACCACAGAAATCAGCCAGAGCCCATACAAGTCTCCTCTTTTTGGAGAGCCTTATGATACTGAGTGTGTaGAAAATGAGGACTGCATGT | + |
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Preference number: 4 (lower is better) Translates to: QPQKSARAHTSLLFLESLMILSV*KMRTAC Trigger: ACATGCAGTCCTCATTTTCCACACACTCAGTATCAT...AAGGCTCTCCAAAAAGAGGAGACTTGTATGGGCTCTGGCTGATTTCTGTGGTTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
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| 3UTR CAA 72 bp | CTCTTAATCGCTGAGCCATCTCTCCAGCCCCATCATTaGAAATCTTCTCATCCCAGAGTTTGGTTTTTACCA | + |
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Preference number: 4 (lower is better) Translates to: LLIAEPSLQPHH*KSSHPRVWFLP Trigger: TGGTAAAAACCAAACTCTGGGATGAGAAGATTTCAAATGATGGGGCTGGAGAGATGGCTCAGCGATTAAGAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000097855.4 |
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| 3UTR CAA 72 bp | AGAGGAGAAAGAGAGCTGACACCAGCATTCAATTCTTaGCTTCCTGGATGTAGATGTGACATTACCACCAAG | + |
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Preference number: 4 (lower is better) Translates to: RGERELTPAFNS*LPGCRCDITTK Trigger: CTTGGTGGTAATGTCACATCTACATCCAGGAAGCAAAGAATTGAATGCTGGTGTCAGCTCTCTTTCTCCTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
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| 3UTR CAA 72 bp | TTGTATGATGTGGTCCATGCTGGTTGCCAAACATCTTaGTTATTTGCTAGTTGGCCACTGGAGGGCAGTATA | + |
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Preference number: 4 (lower is better) Translates to: LYDVVHAGCQTS*LFASWPLEGSI Trigger: TATACTGCCCTCCAGTGGCCAACTAGCAAATAACAAAGATGTTTGGCAACCAGCATGGACCACATCATACAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
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| 3UTR CAA 72 bp | TTGATTGGATTGAGAAGTACCTTCTCATCCCAGAGTTaGGTTTTTACCATGCAGGAAAGACTGAGCTGTCCC | + |
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Preference number: 4 (lower is better) Translates to: LIGLRSTFSSQS*VFTMQERLSCP Trigger: GGGACAGCTCAGTCTTTCCTGCATGGTAAAAACCAAACTCTGGGATGAGAAGGTACTTCTCAATCCAATCAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000168179.8 |
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| CDS-3UTR GCA 90 bp | CAGCTTGATTGGATTGAGAAGTACCTTCTCATCCCAGAGTTTGGTTTTTACCATTCAAATACCCTGAGCTaGTCTGGATATGCCTCTGTC | + |
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Preference number: 4 (lower is better) Translates to: QLDWIEKYLLIPEFGFYHSNTLS*SGYASV Trigger: GACAGAGGCATATCCAGAGCAGCTCAGGGTATTTGA...ATGGTAAAAACCAAACTCTGGGATGAGAAGGTACTTCTCAATCCAATCAAGCTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000168179.8 |
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| 3UTR CAA 72 bp | CTAAACCACTCAGAGCCCATTTTACTTCCTGCTCGTTaGTCTCTTTCATTAGGAGCATTAATAGCCCGAACA | + |
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Preference number: 4 (lower is better) Translates to: LNHSEPILLPAR*SLSLGALIART Trigger: TGTTCGGGCTATTAATGCTCCTAATGAAAGAGACAAACGAGCAGGAAGTAAAATGGGCTCTGAGTGGTTTAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
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| CDS-3UTR TCA 90 bp | AAATCAGCCAGAGCCCATACAAGTCTCCTCTTTTTGGAGAGCCTTCTTTCATGTTGTGATAGAGCCCTGTaGATACTTTACACATTATGT | + |
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Preference number: 4 (lower is better) Translates to: KSARAHTSLLFLESLLSCCDRAL*ILYTLC Trigger: ACATAATGTGTAAAGTATTCACAGGGCTCTATCACA...ACATGAAAGAAGGCTCTCCAAAAAGAGGAGACTTGTATGGGCTCTGGCTGATTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
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| CDS-3UTR TCA 90 bp | CAGAAATATCCCTCACAGGGTCATGTTTTGTGTATAGCAAAATATGTCCAGACTTTTTCGGAAGAACACTaGGAGATAACTCCGGAACTT | + |
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Preference number: 4 (lower is better) Translates to: QKYPSQGHVLCIAKYVQTFSEEH*EITPEL Trigger: AAGTTCCGGAGTTATCTCTCAGTGTTCTTCCGAAAA...AGTCTGGACATATTTTGCTATACACAAAACATGACCCTGTGAGGGATATTTCTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
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| 3UTR CAA 72 bp | AAAAATCCTAAACCTCTGAAATGGCCAAACTTAGCATaGTTTGTGTGGAGAAGCCATCTGGAAAGTGTGACT | + |
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Preference number: 4 (lower is better) Translates to: KNPKPLKWPNLA*FVWRSHLESVT Trigger: AGTCACACTTTCCAGATGGCTTCTCCACACAAACAATGCTAAGTTTGGCCATTTCAGAGGTTTAGGATTTTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
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| 3UTR CAA 72 bp | AAAGAATCAAAGAAAGCCACCTGCCTTTCAACTATATaGGAACACTGCAAACACTTGGGATATGCAGGGTTA | + |
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Preference number: 4 (lower is better) Translates to: KESKKATCLSTI*EHCKHLGYAGL Trigger: TAACCCTGCATATCCCAAGTGTTTGCAGTGTTCCAATATAGTTGAAAGGCAGGTGGCTTTCTTTGATTCTTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
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| CDS-3UTR GCA 90 bp | TCGTTTGTCTCTTTCATTAGGAGCATTAATAGCCCGAACATCTTTGCACACCCTGTGGAAAATGAGGACTaGATGTATAATGAAAACCTT | + |
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Preference number: 4 (lower is better) Translates to: SFVSFIRSINSPNIFAHPVENED*MYNENL Trigger: AAGGTTTTCATTATACATGCAGTCCTCATTTTCCAC...AGGGTGTGCAAAGATGTTCGGGCTATTAATGCTCCTAATGAAAGAGACAAACGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
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| CDS-3UTR CCA 90 bp | CAGAAATATCCCTCACAGGGTCATGTTTTGTGTATAGCAAAATATGTCCAGACTTCAGGATTGTCTTGCTaGAAAATTGAACACCGTTTG | + |
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Preference number: 4 (lower is better) Translates to: QKYPSQGHVLCIAKYVQTSGLSC*KIEHRL Trigger: CAAACGGTGTTCAATTTTCCAGCAAGACAATCCTGA...AGTCTGGACATATTTTGCTATACACAAAACATGACCCTGTGAGGGATATTTCTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
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| 3UTR CAA 72 bp | CTGAATGCTAACTTTTCAACTTTTTCCGAATTAACCTaGCCTGACCAGGTCATGATCTTCTTCATTCTCCAA | + |
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Preference number: 4 (lower is better) Translates to: LNANFSTFSELT*PDQVMIFFILQ Trigger: TTGGAGAATGAAGAAGATCATGACCTGGTCAGGCAAGGTTAATTCGGAAAAAGTTGAAAAGTTAGCATTCAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
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| 3UTR CAA 72 bp | GTTATAGAATTTCCATTACTGAAATTATTAACACACTaGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA | + |
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Preference number: 4 (lower is better) Translates to: VIEFPLLKLLTH*RERERERERER Trigger: TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAAGTGTGTTAATAATTTCAGTAATGGAAATTCTATAAC 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
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| 3UTR CAA 72 bp | ACCAACAACCGTAAAACTTTCTTCTTTAAGCTGCCTTaGTCAGATATTTTGTCACAGCCACAAGATAAGTTA | + |
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Preference number: 4 (lower is better) Translates to: TNNRKTFFFKLP*SDILSQPQDKL Trigger: TAACTTATCTTGTGGCTGTGACAAAATATCTGACAAAGGCAGCTTAAAGAAGAAAGTTTTACGGTTGTTGGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
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| 3UTR CAA 72 bp | ACTCTTTCAAAGCAACACTGCTCCGAAACTGCATGCTaGGACATAACATCTTTAAGAACAAATTATTATGAA | + |
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Preference number: 4 (lower is better) Translates to: TLSKQHCSETAC*DITSLRTNYYE Trigger: TTCATAATAATTTGTTCTTAAAGATGTTATGTCCAAGCATGCAGTTTCGGAGCAGTGTTGCTTTGAAAGAGT 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
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| CDS-3UTR CAA 90 bp | CAACCACAGAAATCAGCCAGAGCCCATACAAGTCTCCTCTTTTTGGAGAGCCTTCTTGCACGATCAGGATaGTCTTGCTGGAAAATTGAA | + |
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Preference number: 5 (lower is better) Translates to: QPQKSARAHTSLLFLESLLARSG*SCWKIE Trigger: TTCAATTTTCCAGCAAGACAATCCTGATCGTGCAAG...AAGGCTCTCCAAAAAGAGGAGACTTGTATGGGCTCTGGCTGATTTCTGTGGTTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
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| CDS-3UTR CAA 90 bp | CAGAAATATCCCTCACAGGGTCATGTTTTGTGTATAGCAAAATATGTCCAGACTACGCTCTTCAGCTTTTaGCAGCTTATCAAGATGAGG | + |
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Preference number: 5 (lower is better) Translates to: QKYPSQGHVLCIAKYVQTTLFSF*QLIKMR Trigger: CCTCATCTTGATAAGCTGCAAAAAGCTGAAGAGCGT...AGTCTGGACATATTTTGCTATACACAAAACATGACCCTGTGAGGGATATTTCTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
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| CDS-3UTR CAA 90 bp | ATTACTGAAATTATTAACACACTTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGTCTTGCTGGAAAATaGAACACCGTTTGCAAAAGC | + |
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Preference number: 5 (lower is better) Translates to: ITEIINTLERERERERERCLAGK*NTVCKS Trigger: GCTTTTGCAAACGGTGTTCAATTTTCCAGCAAGACA...TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAAGTGTGTTAATAATTTCAGTAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
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| CDS TCA 72 bp | GCAAAAGCGTTTGACCATGTGTTTTCGGAAGAACACTaGGAGATAACTCCGGAACTTCTCTCCAACAAAGGC | + |
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Preference number: 6 (lower is better) Translates to: AKAFDHVFSEEH*EITPELLSNKG Trigger: GCCTTTGTTGGAGAGAAGTTCCGGAGTTATCTCTCAGTGTTCTTCCGAAAACACATGGTCAAACGCTTTTGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
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| CDS CAA 72 bp | CTTCATGTTCTCCTGTGGATCGGGTATAGACTGAGCTaGCACGATCAGGATTGTCTTGCTGGAAAATTGAAC | + |
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Preference number: 6 (lower is better) Translates to: LHVLLWIGYRLS*HDQDCLAGKLN Trigger: GTTCAATTTTCCAGCAAGACAATCCTGATCGTGCAAGCTCAGTCTATACCCGATCCACAGGAGAACATGAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
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| CDS TCA 72 bp | AGAAACTTCATGTTCTCCTGTGGATCGGGTATAGACTaGGCTTGCACGATCAGGATTGTCTTGCTGGAAAAT | + |
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Preference number: 6 (lower is better) Translates to: RNFMFSCGSGID*ACTIRIVLLEN Trigger: ATTTTCCAGCAAGACAATCCTGATCGTGCAAGCTCAGTCTATACCCGATCCACAGGAGAACATGAAGTTTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111442.3 |
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