Pregenerated sensors for CCR3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000035448Ensembl transcript IDs: ENSMUST00000039171.9
Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CATCCCCAAGAAGCTATAATCAGAAGTAAAGGAATGAGAGAAAGGTaGCTGAGCCATAGCCACTCCATTTTCCTCCTTCATCTTTGTGTC | + |
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Preference number: 1 (lower is better) Translates to: HPQEAIIRSKGMRER*LSHSHSIFLLHLCV Trigger: GACACAAAGATGAAGGAGGAAAATGGAGTGGCTATGGCTCAGGCACCTTTCTCTCATTCCTTTACTTCTGATTATAGCTTCTTGGGGATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039171.9 |
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| 3UTR TCA 90 bp | CATGAGCAATTTGGAGAAGGAGAGAGTAATGGTTGTAATACAAGATaGGGGGACTATGACCCTATATTTCCTTCTACTATGGAGTATCAG | + |
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Preference number: 1 (lower is better) Translates to: HEQFGEGESNGCNTR*GDYDPIFPSTMEYQ Trigger: CTGATACTCCATAGTAGAAGGAAATATAGGGTCATAGTCCCCTCATCTTGTATTACAACCATTACTCTCTCCTTCTCCAAATTGCTCATG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039171.9 |
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| 3UTR CCA 90 bp | TTCTTTCTGTGTGATATCATATACTTTTCTTGTACATCCTCTATTTaGTATGTGAGGGCCGGTAGAAAGGGGTTTCCAGTCTTACTTCAT | + |
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Preference number: 1 (lower is better) Translates to: FFLCDIIYFSCTSSI*YVRAGRKGFPVLLH Trigger: ATGAAGTAAGACTGGAAACCCCTTTCTACCGGCCCTCACATACCAAATAGAGGATGTACAAGAAAAGTATATGATATCACACAGAAAGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039171.9 |
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| 3UTR CAA 90 bp | TCTCTGAACGCATCACAGTTACAACATAATTCTGAAAGTGTGATCTaGGGACAAGTATCACGTCCACCACCTGGGAACGTGTTGTTGATG | + |
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Preference number: 2 (lower is better) Translates to: SLNASQLQHNSESVI*GQVSRPPPGNVLLM Trigger: CATCAACAACACGTTCCCAGGTGGTGGACGTGATACTTGTCCCAAGATCACACTTTCAGAATTATGTTGTAACTGTGATGCGTTCAGAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039171.9 |
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| 3UTR-3UTR TCA 90 bp | GCCTACTTACAGAGCATTATTGAAGGGATACTTAAAAGAGTGAGTTACCCTCAACTGGGAACGTGTTGTTaGTGCTCAGACCTCACTTCA | + |
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Preference number: 2 (lower is better) Translates to: AYLQSIIEGILKRVSYPQLGTCC*CSDLTS Trigger: TGAAGTGAGGTCTGAGCATCAACAACACGTTCCCAG...TTGAGGGTAACTCACTCTTTTAAGTATCCCTTCAATAATGCTCTGTAAGTAGGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039171.9 |
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| 3UTR-3UTR GCA 90 bp | ATCAGAAGTAAAGGAATGAGAGAAAGGTGCCTGAGCCATAGCCACTCCATTTTCAATAGGAGTTACCTGTaGATGTGTCACTATACCCTC | + |
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Preference number: 2 (lower is better) Translates to: IRSKGMRERCLSHSHSIFNRSYL*MCHYTL Trigger: GAGGGTATAGTGACACATGCACAGGTAACTCCTATT...GAAAATGGAGTGGCTATGGCTCAGGCACCTTTCTCTCATTCCTTTACTTCTGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039171.9 |
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| 3UTR-3UTR TCA 90 bp | TCTCTGAACGCATCACAGTTACAACATAATTCTGAAAGTGTGATCTTGGGACAAGTGTTTACAGGTCTTTaGGAGCATCAGCATTGCATG | + |
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Preference number: 2 (lower is better) Translates to: SLNASQLQHNSESVILGQVFTGL*EHQHCM Trigger: CATGCAATGCTGATGCTCTCAAAGACCTGTAAACAC...TTGTCCCAAGATCACACTTTCAGAATTATGTTGTAACTGTGATGCGTTCAGAGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039171.9 |
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| 3UTR-3UTR TCA 90 bp | ATCATGAGCAATTTGGAGAAGGAGAGAGTAATGGTTGTAATACAAGATGAGGGGCTCCTACAACACTTGTaGCATCCTCATTTTCAATTG | + |
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Preference number: 2 (lower is better) Translates to: IMSNLEKERVMVVIQDEGLLQHL*HPHFQL Trigger: CAATTGAAAATGAGGATGTCACAAGTGTTGTAGGAG...CCCCTCATCTTGTATTACAACCATTACTCTCTCCTTCTCCAAATTGCTCATGAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039171.9 |
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| 3UTR-3UTR TCA 90 bp | GCCTACTTACAGAGCATTATTGAAGGGATACTTAAAAGAGTGAGTTACCCTCAAAAGATGAGGGGACTATaGCCCTATATTTCCTTCTAC | + |
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Preference number: 2 (lower is better) Translates to: AYLQSIIEGILKRVSYPQKMRGL*PYISFY Trigger: GTAGAAGGAAATATAGGGTCATAGTCCCCTCATCTT...TTGAGGGTAACTCACTCTTTTAAGTATCCCTTCAATAATGCTCTGTAAGTAGGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000039171.9 |
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| 3UTR-3UTR CCA 90 bp | AGTGCCAAGTTAAGTAAAGGCTTAGAAGTTACATCCCCAAGAAGCTATAATCAGACTTCTCAATACAGATaGCCCCAGCCTGTTTTTCAA | + |
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Preference number: 2 (lower is better) Translates to: SAKLSKGLEVTSPRSYNQTSQYR*PQPVFQ Trigger: TTGAAAAACAGGCTGGGGCCATCTGTATTGAGAAGT...CTGATTATAGCTTCTTGGGGATGTAACTTCTAAGCCTTTACTTAACTTGGCACT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000039171.9 |
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| 3UTR-3UTR GCA 90 bp | CTTGTGACATCCTCATTTTCAATTGTTGAGTCTCTGAACGCATCACAGTTACAAGTGTTCCTTCCAAGATaGTTTCAATCACTAATAGGA | + |
|
Preference number: 2 (lower is better) Translates to: LVTSSFSIVESLNASQLQVFLPR*FQSLIG Trigger: TCCTATTAGTGATTGAAAGCATCTTGGAAGGAACAC...TTGTAACTGTGATGCGTTCAGAGACTCAACAATTGAAAATGAGGATGTCACAAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039171.9 |
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| 3UTR CAA 90 bp | TTCCAATCTTATATATCTTTATCATCTCCCAAGATCATGAGCAATTaGGAGAAGGAGAGAGTAATGGTTGTAATACAAGATGAGGGGACT | + |
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Preference number: 2 (lower is better) Translates to: FQSYISLSSPKIMSN*EKERVMVVIQDEGT Trigger: AGTCCCCTCATCTTGTATTACAACCATTACTCTCTCCTTCTCCAAATTGCTCATGATCTTGGGAGATGATAAAGATATATAAGATTGGAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039171.9 |
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| 3UTR-3UTR GCA 90 bp | TCTCTGAACGCATCACAGTTACAACATAATTCTGAAAGTGTGATCTTGGGACAATTTCTAGGGTCTGTGTaGCAGAATAATGAACATATA | + |
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Preference number: 2 (lower is better) Translates to: SLNASQLQHNSESVILGQFLGSV*QNNEHI Trigger: TATATGTTCATTATTCTGGCACACAGACCCTAGAAA...TTGTCCCAAGATCACACTTTCAGAATTATGTTGTAACTGTGATGCGTTCAGAGA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039171.9 |
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| 3UTR TCA 72 bp | TGCTCAGACCTCACTTCAAACATGAGTCATAAGCACTaGGGTGGTGCTATAAGTGCACACTTCAATCCAGAG | + |
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Preference number: 3 (lower is better) Translates to: CSDLTSNMSHKH*GGAISAHFNPE Trigger: CTCTGGATTGAAGTGTGCACTTATAGCACCACCTCAGTGCTTATGACTCATGTTTGAAGTGAGGTCTGAGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039171.9 |
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| 3UTR-3UTR CAA 90 bp | CTTGTGACATCCTCATTTTCAATTGTTGAGTCTCTGAACGCATCACAGTTACAACCTGGGAACGTGTTGTaGATGCTCAGACCTCACTTC | + |
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Preference number: 3 (lower is better) Translates to: LVTSSFSIVESLNASQLQPGNVL*MLRPHF Trigger: GAAGTGAGGTCTGAGCATCAACAACACGTTCCCAGG...TTGTAACTGTGATGCGTTCAGAGACTCAACAATTGAAAATGAGGATGTCACAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039171.9 |
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| 3UTR GCA 72 bp | GAAGCTATAATCAGAAGTAAAGGAATGAGAGAAAGGTaGCTGAGCCATAGCCACTCCATTTTCCTCCTTCAT | + |
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Preference number: 3 (lower is better) Translates to: EAIIRSKGMRER*LSHSHSIFLLH Trigger: ATGAAGGAGGAAAATGGAGTGGCTATGGCTCAGGCACCTTTCTCTCATTCCTTTACTTCTGATTATAGCTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039171.9 |
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| 3UTR CCA 72 bp | TGTGATATCATATACTTTTCTTGTACATCCTCTATTTaGTATGTGAGGGCCGGTAGAAAGGGGTTTCCAGTC | + |
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Preference number: 3 (lower is better) Translates to: CDIIYFSCTSSI*YVRAGRKGFPV Trigger: GACTGGAAACCCCTTTCTACCGGCCCTCACATACCAAATAGAGGATGTACAAGAAAAGTATATGATATCACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039171.9 |
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| 3UTR CCA 72 bp | GATGAGGGGACTATGACCCTATATTTCCTTCTACTATaGAGTATCAGTAACTCCAATAGCATCACTACTGAC | + |
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Preference number: 3 (lower is better) Translates to: DEGTMTLYFLLL*SISNSNSITTD Trigger: GTCAGTAGTGATGCTATTGGAGTTACTGATACTCCATAGTAGAAGGAAATATAGGGTCATAGTCCCCTCATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039171.9 |
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| 3UTR-3UTR CAA 90 bp | ATCAGAAGTAAAGGAATGAGAGAAAGGTGCCTGAGCCATAGCCACTCCATTTTCACTGACTTAATGTGTTaGCTTCATCTTTCAGTCCAT | + |
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Preference number: 3 (lower is better) Translates to: IRSKGMRERCLSHSHSIFTDLMC*LHLSVH Trigger: ATGGACTGAAAGATGAAGCAAACACATTAAGTCAGT...GAAAATGGAGTGGCTATGGCTCAGGCACCTTTCTCTCATTCCTTTACTTCTGAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039171.9 |
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| 3UTR TCA 72 bp | GATATTCTGCAGTTATTATGTGTGTTTACAGGTCTTTaGGAGCATCAGCATTGCATGGAGAGTACAAATGAC | + |
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Preference number: 3 (lower is better) Translates to: DILQLLCVFTGL*EHQHCMESTND Trigger: GTCATTTGTACTCTCCATGCAATGCTGATGCTCTCAAAGACCTGTAAACACACATAATAACTGCAGAATATC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039171.9 |
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| 3UTR TCA 72 bp | TTTGGAGAAGGAGAGAGTAATGGTTGTAATACAAGATaGGGGGACTATGACCCTATATTTCCTTCTACTATG | + |
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Preference number: 3 (lower is better) Translates to: FGEGESNGCNTR*GDYDPIFPSTM Trigger: CATAGTAGAAGGAAATATAGGGTCATAGTCCCCTCATCTTGTATTACAACCATTACTCTCTCCTTCTCCAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039171.9 |
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| 3UTR-3UTR CAA 90 bp | CTTGTGACATCCTCATTTTCAATTGTTGAGTCTCTGAACGCATCACAGTTACAATTTTTCATGTCATGTTaGATGAATTGTCAACTGGCC | + |
|
Preference number: 3 (lower is better) Translates to: LVTSSFSIVESLNASQLQFFMSC*MNCQLA Trigger: GGCCAGTTGACAATTCATCAAACATGACATGAAAAA...TTGTAACTGTGATGCGTTCAGAGACTCAACAATTGAAAATGAGGATGTCACAAG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039171.9 |
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| 3UTR CCA 72 bp | CCAAAAGCACTGCATCATATGAATTCTTATCATTCATaGGTTATTTGCATAGTGCCAACTTCTTTCTGTGTG | + |
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Preference number: 3 (lower is better) Translates to: PKALHHMNSYHS*VICIVPTSFCV Trigger: CACACAGAAAGAAGTTGGCACTATGCAAATAACCCATGAATGATAAGAATTCATATGATGCAGTGCTTTTGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039171.9 |
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| CDS-3UTR GCA 90 bp | CATAATTCTGAAAGTGTGATCTTGGGACAAGTATCACGTCCACCACCTGGGAACAAATTCAGGCAATGCTaGCAGTCCTGCAAGGCCCCA | + |
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Preference number: 4 (lower is better) Translates to: HNSESVILGQVSRPPPGNKFRQC*QSCKAP Trigger: TGGGGCCTTGCAGGACTGGCAGCATTGCCTGAATTT...GTTCCCAGGTGGTGGACGTGATACTTGTCCCAAGATCACACTTTCAGAATTATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039171.9 |
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| CDS-3UTR TCA 90 bp | GCCTACTTACAGAGCATTATTGAAGGGATACTTAAAAGAGTGAGTTACCCTCAATGGAGGCAGGAGCCATaGCCCCAGCTCTTTGATTCT | + |
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Preference number: 4 (lower is better) Translates to: AYLQSIIEGILKRVSYPQWRQEP*PQLFDS Trigger: AGAATCAAAGAGCTGGGGTCATGGCTCCTGCCTCCA...TTGAGGGTAACTCACTCTTTTAAGTATCCCTTCAATAATGCTCTGTAAGTAGGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039171.9 |
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| 3UTR CAA 72 bp | GCATCACAGTTACAACATAATTCTGAAAGTGTGATCTaGGGACAAGTATCACGTCCACCACCTGGGAACGTG | + |
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Preference number: 4 (lower is better) Translates to: ASQLQHNSESVI*GQVSRPPPGNV Trigger: CACGTTCCCAGGTGGTGGACGTGATACTTGTCCCAAGATCACACTTTCAGAATTATGTTGTAACTGTGATGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039171.9 |
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| CDS-3UTR GCA 90 bp | GCCTACTTACAGAGCATTATTGAAGGGATACTTAAAAGAGTGAGTTACCCTCAAATCACCTCAGTCACCTaGATGGCCAGGTCCAGATGT | + |
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Preference number: 4 (lower is better) Translates to: AYLQSIIEGILKRVSYPQITSVT*MARSRC Trigger: ACATCTGGACCTGGCCATGCAGGTGACTGAGGTGAT...TTGAGGGTAACTCACTCTTTTAAGTATCCCTTCAATAATGCTCTGTAAGTAGGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039171.9 |
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| CDS-3UTR GCA 90 bp | ATCATGAGCAATTTGGAGAAGGAGAGAGTAATGGTTGTAATACAAGATGAGGGGACCACAGAGATTTCTTaGTCCCCAGTTGATGGGGAG | + |
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Preference number: 4 (lower is better) Translates to: IMSNLEKERVMVVIQDEGTTEIS*SPVDGE Trigger: CTCCCCATCAACTGGGGAGCAAGAAATCTCTGTGGT...CCCCTCATCTTGTATTACAACCATTACTCTCTCCTTCTCCAAATTGCTCATGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000039171.9 |
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| CDS-3UTR CCA 90 bp | CATAATTCTGAAAGTGTGATCTTGGGACAAGTATCACGTCCACCACCTGGGAACGACTTTTTCACAGGGTaGTGCCCACTCATATTCATA | + |
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Preference number: 4 (lower is better) Translates to: HNSESVILGQVSRPPPGNDFFTG*CPLIFI Trigger: TATGAATATGAGTGGGCACCACCCTGTGAAAAAGTC...GTTCCCAGGTGGTGGACGTGATACTTGTCCCAAGATCACACTTTCAGAATTATG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039171.9 |
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| CDS-3UTR TCA 90 bp | TGGTATGTGAGGGCCGGTAGAAAGGGGTTTCCAGTCTTACTTCATCTGTTAATCAGATGTTTACTCTGCTaGCAGCTGGTCTCTAAAAAT | + |
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Preference number: 4 (lower is better) Translates to: WYVRAGRKGFPVLLHLLIRCLLC*QLVSKN Trigger: ATTTTTAGAGACCAGCTGTCAGCAGAGTAAACATCT...GATTAACAGATGAAGTAAGACTGGAAACCCCTTTCTACCGGCCCTCACATACCA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039171.9 |
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| CDS-3UTR GCA 90 bp | GCCTACTTACAGAGCATTATTGAAGGGATACTTAAAAGAGTGAGTTACCCTCAACTGGATAGCGAGGACTaGAGGAAAACTCTCCAAAGC | + |
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Preference number: 4 (lower is better) Translates to: AYLQSIIEGILKRVSYPQLDSED*RKTLQS Trigger: GCTTTGGAGAGTTTTCCTGCAGTCCTCGCTATCCAG...TTGAGGGTAACTCACTCTTTTAAGTATCCCTTCAATAATGCTCTGTAAGTAGGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039171.9 |
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| CDS-3UTR TCA 90 bp | GAATTCTTATCATTCATGGGTTATTTGCATAGTGCCAACTTCTTTCTGTGTGATTTCTTGCTCCCCAGTTaGTGGGGAGACAGAGCTTGT | + |
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Preference number: 4 (lower is better) Translates to: EFLSFMGYLHSANFFLCDFLLPS*WGDRAC Trigger: ACAAGCTCTGTCTCCCCATCAACTGGGGAGCAAGAA...ATCACACAGAAAGAAGTTGGCACTATGCAAATAACCCATGAATGATAAGAATTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039171.9 |
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| CDS-3UTR GCA 90 bp | ATGACTGAGCTAGAGGTCATTGTGACTGACTTAATGTGTTTGCTTCATCTTTCAACCCAGACAGCATTTTaGACATGTAGTGGCCAAAAC | + |
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Preference number: 4 (lower is better) Translates to: MTELEVIVTDLMCLLHLSTQTAF*TCSGQN Trigger: GTTTTGGCCACTACATGTGCAAAATGCTGTCTGGGT...TGAAAGATGAAGCAAACACATTAAGTCAGTCACAATGACCTCTAGCTCAGTCAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039171.9 |
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| CDS-3UTR GCA 90 bp | ATCAGAAGTAAAGGAATGAGAGAAAGGTGCCTGAGCCATAGCCACTCCATTTTCTTTTCCCAGGTAAACTaGCACATTTCTGTGGAAAAA | + |
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Preference number: 4 (lower is better) Translates to: IRSKGMRERCLSHSHSIFFSQVN*HISVEK Trigger: TTTTTCCACAGAAATGTGGCAGTTTACCTGGGAAAA...GAAAATGGAGTGGCTATGGCTCAGGCACCTTTCTCTCATTCCTTTACTTCTGAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039171.9 |
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| CDS-3UTR CCA 90 bp | CTGTTTCCAAATTTCTACTCTTCTCCTGTAATAGGAGTTACCTGTGCATGTGTCTACTCTGCTGACAGCTaGTCTCTAAAAATGTGCTGT | + |
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Preference number: 4 (lower is better) Translates to: LFPNFYSSPVIGVTCACVYSADS*SLKMCC Trigger: ACAGCACATTTTTAGAGACCAGCTGTCAGCAGAGTA...GACACATGCACAGGTAACTCCTATTACAGGAGAAGAGTAGAAATTTGGAAACAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039171.9 |
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| CDS-3UTR CCA 90 bp | ATTATGTGTGTTTACAGGTCTTTGAGAGCATCAGCATTGCATGGAGAGTACAAAACTGCCACATTTCTGTaGAAAAAGAGCCGAAGGTGT | + |
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Preference number: 4 (lower is better) Translates to: IMCVYRSLRASALHGEYKTATFL*KKSRRC Trigger: ACACCTTCGGCTCTTTTTCCACAGAAATGTGGCAGT...TTTGTACTCTCCATGCAATGCTGATGCTCTCAAAGACCTGTAAACACACATAAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039171.9 |
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| CDS-3UTR CCA 90 bp | AGTGCCAAGTTAAGTAAAGGCTTAGAAGTTACATCCCCAAGAAGCTATAATCAGATAGTGAATCCAGAATaGGACAGTGAAGAGAAAGAG | + |
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Preference number: 4 (lower is better) Translates to: SAKLSKGLEVTSPRSYNQIVNPE*DSEEKE Trigger: CTCTTTCTCTTCACTGTCCCATTCTGGATTCACTAT...CTGATTATAGCTTCTTGGGGATGTAACTTCTAAGCCTTTACTTAACTTGGCACT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039171.9 |
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| CDS GCA 90 bp | CTCTCCAAAGCTGTCTTGAGACTCATGGAAGATAAATTCAGGCAATaGTGCCAGTCCTGCAAGGCCCCAGGTAATGATACTGGTGATAGT | + |
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Preference number: 5 (lower is better) Translates to: LSKAVLRLMEDKFRQ*CQSCKAPGNDTGDS Trigger: ACTATCACCAGTATCATTACCTGGGGCCTTGCAGGACTGGCAGCATTGCCTGAATTTATCTTCCATGAGTCTCAAGACAGCTTTGGAGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039171.9 |
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| CDS GCA 90 bp | GTCTTGAGACTCATGGAAGATAAATTCAGGCAATGCTGCCAGTCCTaGAAGGCCCCAGGTAATGATACTGGTGATAGTAGCAAAAGTCAC | + |
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Preference number: 5 (lower is better) Translates to: VLRLMEDKFRQCCQS*KAPGNDTGDSSKSH Trigger: GTGACTTTTGCTACTATCACCAGTATCATTACCTGGGGCCTTGCAGGACTGGCAGCATTGCCTGAATTTATCTTCCATGAGTCTCAAGAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039171.9 |
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| CDS-3UTR CAA 90 bp | AGTGCCAAGTTAAGTAAAGGCTTAGAAGTTACATCCCCAAGAAGCTATAATCAGTTTCTTGCTCCCCAGTaGATGGGGAGACAGAGCTTG | + |
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Preference number: 5 (lower is better) Translates to: SAKLSKGLEVTSPRSYNQFLAPQ*MGRQSL Trigger: CAAGCTCTGTCTCCCCATCAACTGGGGAGCAAGAAA...CTGATTATAGCTTCTTGGGGATGTAACTTCTAAGCCTTTACTTAACTTGGCACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000039171.9 |
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| CDS-3UTR CAA 90 bp | TGGTATGTGAGGGCCGGTAGAAAGGGGTTTCCAGTCTTACTTCATCTGTTAATCCTTTCAACCACAGTCTaGATTTCATCTGTGTTGAAT | + |
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Preference number: 5 (lower is better) Translates to: WYVRAGRKGFPVLLHLLILSTTV*ISSVLN Trigger: ATTCAACACAGATGAAATCAAGACTGTGGTTGAAAG...GATTAACAGATGAAGTAAGACTGGAAACCCCTTTCTACCGGCCCTCACATACCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039171.9 |
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| CDS-3UTR CAA 90 bp | CTTGTGACATCCTCATTTTCAATTGTTGAGTCTCTGAACGCATCACAGTTACAACTCTCCAAAGCTGTCTaGAGACTCATGGAAGATAAA | + |
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Preference number: 5 (lower is better) Translates to: LVTSSFSIVESLNASQLQLSKAV*RLMEDK Trigger: TTTATCTTCCATGAGTCTCAAGACAGCTTTGGAGAG...TTGTAACTGTGATGCGTTCAGAGACTCAACAATTGAAAATGAGGATGTCACAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039171.9 |
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| CDS-3UTR CAA 90 bp | TCTAAAGAGCCCATATATTCCTCCTACAACACTTGTGACATCCTCATTTTCAATATGGGGAGACAGAGCTaGTTCTTTCCATTTTCTCAC | + |
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Preference number: 5 (lower is better) Translates to: SKEPIYSSYNTCDILIFNMGRQS*FFPFSH Trigger: GTGAGAAAATGGAAAGAACAAGCTCTGTCTCCCCAT...ATTGAAAATGAGGATGTCACAAGTGTTGTAGGAGGAATATATGGGCTCTTTAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000039171.9 |
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| CDS-3UTR CAA 90 bp | GAATTCTTATCATTCATGGGTTATTTGCATAGTGCCAACTTCTTTCTGTGTGATCATGACCCCAGCTCTTaGATTCTGACTTTTTCACAG | + |
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Preference number: 5 (lower is better) Translates to: EFLSFMGYLHSANFFLCDHDPSS*ILTFSQ Trigger: CTGTGAAAAAGTCAGAATCAAAGAGCTGGGGTCATG...ATCACACAGAAAGAAGTTGGCACTATGCAAATAACCCATGAATGATAAGAATTC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039171.9 |
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| CDS CAA 72 bp | GAGTACAGTGGAGGCAGGAGCCATGACCCCAGCTCTTaGATTCTGACTTTTTCACAGGGTGGTGCCCACTCA | + |
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Preference number: 6 (lower is better) Translates to: EYSGGRSHDPSS*ILTFSQGGAHS Trigger: TGAGTGGGCACCACCCTGTGAAAAAGTCAGAATCAAAGAGCTGGGGTCATGGCTCCTGCCTCCACTGTACTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039171.9 |
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| CDS CAA 90 bp | ACCCTCTGGATAGCGAGGACTGCAGGAAAACTCTCCAAAGCTGTCTaGAGACTCATGGAAGATAAATTCAGGCAATGCTGCCAGTCCTGC | + |
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Preference number: 6 (lower is better) Translates to: TLWIARTAGKLSKAV*RLMEDKFRQCCQSC Trigger: GCAGGACTGGCAGCATTGCCTGAATTTATCTTCCATGAGTCTCAAGACAGCTTTGGAGAGTTTTCCTGCAGTCCTCGCTATCCAGAGGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039171.9 |
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| CDS CCA 72 bp | AGCATGGAAACGTTTCCAGCTGTCTTCTTCACCCTCTaGATAGCGAGGACTGCAGGAAAACTCTCCAAAGCT | + |
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Preference number: 6 (lower is better) Translates to: SMETFPAVFFTL*IARTAGKLSKA Trigger: AGCTTTGGAGAGTTTTCCTGCAGTCCTCGCTATCCAGAGGGTGAAGAAGACAGCTGGAAACGTTTCCATGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039171.9 |
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| CDS GCA 72 bp | CCCCAGCTCTTTGATTCTGACTTTTTCACAGGGTGGTaGCCACTCATATTCATAGGGTGTGGTCTCAAAGCT | + |
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Preference number: 6 (lower is better) Translates to: PQLFDSDFFTGW*PLIFIGCGLKA Trigger: AGCTTTGAGACCACACCCTATGAATATGAGTGGGCACCACCCTGTGAAAAAGTCAGAATCAAAGAGCTGGGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039171.9 |
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| CDS GCA 72 bp | CTCATGGAAGATAAATTCAGGCAATGCTGCCAGTCCTaGAAGGCCCCAGGTAATGATACTGGTGATAGTAGC | + |
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Preference number: 6 (lower is better) Translates to: LMEDKFRQCCQS*KAPGNDTGDSS Trigger: GCTACTATCACCAGTATCATTACCTGGGGCCTTGCAGGACTGGCAGCATTGCCTGAATTTATCTTCCATGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039171.9 |
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| CDS GCA 72 bp | GCTGTCTTGAGACTCATGGAAGATAAATTCAGGCAATaGTGCCAGTCCTGCAAGGCCCCAGGTAATGATACT | + |
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Preference number: 6 (lower is better) Translates to: AVLRLMEDKFRQ*CQSCKAPGNDT Trigger: AGTATCATTACCTGGGGCCTTGCAGGACTGGCAGCATTGCCTGAATTTATCTTCCATGAGTCTCAAGACAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039171.9 |
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| CDS CAA 72 bp | ATAGCGAGGACTGCAGGAAAACTCTCCAAAGCTGTCTaGAGACTCATGGAAGATAAATTCAGGCAATGCTGC | + |
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Preference number: 6 (lower is better) Translates to: IARTAGKLSKAV*RLMEDKFRQCC Trigger: GCAGCATTGCCTGAATTTATCTTCCATGAGTCTCAAGACAGCTTTGGAGAGTTTTCCTGCAGTCCTCGCTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039171.9 |
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| CDS CCA 72 bp | GGAAGAGCTAGACCAAAGATATTCATTCTTAGAGCATaGAAACGTTTCCAGCTGTCTTCTTCACCCTCTGGA | + |
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Preference number: 6 (lower is better) Translates to: GRARPKIFILRA*KRFQLSSSPSG Trigger: TCCAGAGGGTGAAGAAGACAGCTGGAAACGTTTCCATGCTCTAAGAATGAATATCTTTGGTCTAGCTCTTCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039171.9 |
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