Pregenerated sensors for CCR2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000049103Ensembl transcript IDs: ENSMUST00000055918.7, ENSMUST00000165984.3, ENSMUST00000168841.3, ENSMUST00000171719.8
Found 142 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GTTCTAAGCACACCACTTCCTCTGTCCCACAGATCTCTGCCTTTTTaGTGCAGCTCTCTGTGCCTGATGAAGGAGTTGGCTTTTCTCCTT | + |
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Preference number: 1 (lower is better) Translates to: VLSTPLPLSHRSLPF*CSSLCLMKELAFLL Trigger: AAGGAGAAAAGCCAACTCCTTCATCAGGCACAGAGAGCTGCAGCAAAAAGGCAGAGATCTGTGGGACAGAGGAAGTGGTGTGCTTAGAAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
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| 3UTR GCA 90 bp | CTAAGCACACCACTTCCTCTGTCCCACAGATCTCTGCCTTTTTGCTaGAGCTCTCTGTGCCTGATGAAGGAGTTGGCTTTTCTCCTTATT | + |
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Preference number: 1 (lower is better) Translates to: LSTPLPLSHRSLPFC*SSLCLMKELAFLLI Trigger: AATAAGGAGAAAAGCCAACTCCTTCATCAGGCACAGAGAGCTGCAGCAAAAAGGCAGAGATCTGTGGGACAGAGGAAGTGGTGTGCTTAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
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| 3UTR TCA 90 bp | CCTGACAGAAACCTTTCCTCAGTGCTAAGGCATCCATTTTGCTTCTaGTTCTATGTAGTTCTAAGCACACCACTTCCTCTGTCCCACAGA | + |
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Preference number: 1 (lower is better) Translates to: PDRNLSSVLRHPFCF*FYVVLSTPLPLSHR Trigger: TCTGTGGGACAGAGGAAGTGGTGTGCTTAGAACTACATAGAATCAGAAGCAAAATGGATGCCTTAGCACTGAGGAAAGGTTTCTGTCAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
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| 3UTR CCA 90 bp | GCTTATCATAGTGGACATGGATTTCTTACTCCTCTTCTCCATGGCTaGGATCCTAGCTTCAGTCCTCATATCTGTTTACTCACCAAGATG | + |
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Preference number: 1 (lower is better) Translates to: AYHSGHGFLTPLLHG*DPSFSPHICLLTKM Trigger: CATCTTGGTGAGTAAACAGATATGAGGACTGAAGCTAGGATCCCAGCCATGGAGAAGAGGAGTAAGAAATCCATGTCCACTATGATAAGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168841.3 |
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| 3UTR TCA 90 bp | GTCCTCATATCTGTTTACTCACCAAGATGGAGGGCTACATTTTACTaGAAATTGTCTCAGCTCAGTCTTGCTGGGACTATAATCGGAAGA | + |
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Preference number: 1 (lower is better) Translates to: VLISVYSPRWRATFY*KLSQLSLAGTIIGR Trigger: TCTTCCGATTATAGTCCCAGCAAGACTGAGCTGAGACAATTTTCAGTAAAATGTAGCCCTCCATCTTGGTGAGTAAACAGATATGAGGAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168841.3 |
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| 3UTR GCA 90 bp | TTGGCTTTTCTCCTTATTCTTGGTCATTCACTACTTTTAGCCTTCTaGTCTCCCTGGAAAGCAGAAGGAAAGATCAAACAAGAGCCCTTA | + |
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Preference number: 1 (lower is better) Translates to: LAFLLILGHSLLLAF*SPWKAEGKIKQEPL Trigger: TAAGGGCTCTTGTTTGATCTTTCCTTCTGCTTTCCAGGGAGAGCAGAAGGCTAAAAGTAGTGAATGACCAAGAATAAGGAGAAAAGCCAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
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| 3UTR CCA 90 bp | ATGGAGGGCTACATTTTACTGAAAATTGTCTCAGCTCAGTCTTGCTaGGACTATAATCGGAAGAAATTGATGTCACTTGTGTTTGTCTTC | + |
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Preference number: 1 (lower is better) Translates to: MEGYILLKIVSAQSC*DYNRKKLMSLVFVF Trigger: GAAGACAAACACAAGTGACATCAATTTCTTCCGATTATAGTCCCAGCAAGACTGAGCTGAGACAATTTTCAGTAAAATGTAGCCCTCCAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000168841.3 |
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| 3UTR TCA 90 bp | TTCAGAAATTTCTTCTCATCATGTGGTAGCAAAGCCAGACCACAATaGCTTTTAACTCTCAAGTTGTCTGTTCCTTTGTTTCTTGCTTCT | + |
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Preference number: 1 (lower is better) Translates to: FRNFFSSCGSKARPQ*LLTLKLSVPLFLAS Trigger: AGAAGCAAGAAACAAAGGAACAGACAACTTGAGAGTTAAAAGTCATTGTGGTCTGGCTTTGCTACCACATGATGAGAAGAAATTTCTGAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000165984.3 ENSMUST00000168841.3 |
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| 3UTR GCA 90 bp | ATAGATGCTGGGTATATAAATGAAGAAACAAAAGTATCTCAATACTaGATGTTCACTAAGTTGCATGGTTATCAAAGGAGGCAGCAAGTC | + |
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Preference number: 1 (lower is better) Translates to: IDAGYINEETKVSQY*MFTKLHGYQRRQQV Trigger: GACTTGCTGCCTCCTTTGATAACCATGCAACTTAGTGAACATGCAGTATTGAGATACTTTTGTTTCTTCATTTATATACCCAGCATCTAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171719.8 |
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| 3UTR CCA 90 bp | ATACAAGAAGAGATATGGTTCAGTCACGGCATAATTATAACGTTCTaGGCACCTGATTTAAAGGTCTCTATTGTTCAATATATCCATGAG | + |
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Preference number: 1 (lower is better) Translates to: IQEEIWFSHGIIITF*APDLKVSIVQYIHE Trigger: CTCATGGATATATTGAACAATAGAGACCTTTAAATCAGGTGCCCAGAACGTTATAATTATGCCGTGACTGAACCATATCTCTTCTTGTAT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
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| 3UTR-3UTR CCA 90 bp | ACCACTTCCTCTGTCCCACAGATCTCTGCCTTTTTGCTGCAGCTCTCTGTGCCTGCCTTCTGCTCTCCCTaGAAAGCAGAAGGAAAGATC | + |
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Preference number: 2 (lower is better) Translates to: TTSSVPQISAFLLQLSVPAFCSP*KAEGKI Trigger: GATCTTTCCTTCTGCTTTCCAGGGAGAGCAGAAGGC...AGGCACAGAGAGCTGCAGCAAAAAGGCAGAGATCTGTGGGACAGAGGAAGTGGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
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| 3UTR-3UTR GCA 90 bp | CACTCAGGAGCAACAGTGCATATCTCCTCCTTCTCACTCAGTCCTGGCAGCCTCGTCTTTGAGGCTTGTTaGTATGTACAAACTGCTCCC | + |
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Preference number: 2 (lower is better) Translates to: HSGATVHISSFSLSPGSLVFEAC*YVQTAP Trigger: GGGAGCAGTTTGTACATAGCAACAAGCCTCAAAGAC...GAGGCTGCCAGGACTGAGTGAGAAGGAGGAGATATGCACTGTTGCTCCTGAGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
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| 3UTR-3UTR TCA 90 bp | AAGCACACCACTTCCTCTGTCCCACAGATCTCTGCCTTTTTGCTGCAGCTCTCTTGTGAAAGGGTCATTTaGCCCCCACATAGGGATCAT | + |
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Preference number: 2 (lower is better) Translates to: KHTTSSVPQISAFLLQLSCERVI*PPHRDH Trigger: ATGATCCCTATGTGGGGGTCAAATGACCCTTTCACA...AGAGAGCTGCAGCAAAAAGGCAGAGATCTGTGGGACAGAGGAAGTGGTGTGCTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
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| 3UTR-3UTR TCA 90 bp | CACTCAGGAGCAACAGTGCATATCTCCTCCTTCTCACTCAGTCCTGGCAGCCTCAACGTTCTGGGCACCTaGTTTAAAGGTCTCTATTGT | + |
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Preference number: 2 (lower is better) Translates to: HSGATVHISSFSLSPGSLNVLGT*FKGLYC Trigger: ACAATAGAGACCTTTAAATCAGGTGCCCAGAACGTT...GAGGCTGCCAGGACTGAGTGAGAAGGAGGAGATATGCACTGTTGCTCCTGAGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
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| 3UTR-3UTR GCA 90 bp | ACCACTTCCTCTGTCCCACAGATCTCTGCCTTTTTGCTGCAGCTCTCTGTGCCTGTCTTTGAGGCTTGTTaGTATGTACAAACTGCTCCC | + |
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Preference number: 2 (lower is better) Translates to: TTSSVPQISAFLLQLSVPVFEAC*YVQTAP Trigger: GGGAGCAGTTTGTACATAGCAACAAGCCTCAAAGAC...AGGCACAGAGAGCTGCAGCAAAAAGGCAGAGATCTGTGGGACAGAGGAAGTGGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
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| 3UTR-3UTR GCA 90 bp | ACCACTTCCTCTGTCCCACAGATCTCTGCCTTTTTGCTGCAGCTCTCTGTGCCTCTACTTTTAGCCTTCTaGTCTCCCTGGAAAGCAGAA | + |
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Preference number: 2 (lower is better) Translates to: TTSSVPQISAFLLQLSVPLLLAF*SPWKAE Trigger: TTCTGCTTTCCAGGGAGAGCAGAAGGCTAAAAGTAG...AGGCACAGAGAGCTGCAGCAAAAAGGCAGAGATCTGTGGGACAGAGGAAGTGGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
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| 3UTR-3UTR CCA 90 bp | CTGACCCAGTGGCTTATCATAGTGGACATGGATTTCTTACTCCTCTTCTCCATGCTTCTCACTCAGTCCTaGCAGCCTCATGCCCTCCTT | + |
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Preference number: 2 (lower is better) Translates to: LTQWLIIVDMDFLLLFSMLLTQS*QPHALL Trigger: AAGGAGGGCATGAGGCTGCCAGGACTGAGTGAGAAG...CATGGAGAAGAGGAGTAAGAAATCCATGTCCACTATGATAAGCCACTGGGTCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168841.3 |
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| 3UTR-3UTR TCA 90 bp | ACCACTTCCTCTGTCCCACAGATCTCTGCCTTTTTGCTGCAGCTCTCTGTGCCTACCTTCCTAATCCTGTaGCCCTTTAATACAGTTCCT | + |
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Preference number: 2 (lower is better) Translates to: TTSSVPQISAFLLQLSVPTFLIL*PFNTVP Trigger: AGGAACTGTATTAAAGGGTCACAGGATTAGGAAGGT...AGGCACAGAGAGCTGCAGCAAAAAGGCAGAGATCTGTGGGACAGAGGAAGTGGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
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| 3UTR-3UTR GCA 90 bp | TTCTCCATGGCTGGGATCCTAGCTTCAGTCCTCATATCTGTTTACTCACCAAGAAGATCTCTGCCTTTTTaGTGCAGCTCTCTGTGCCTG | + |
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Preference number: 2 (lower is better) Translates to: FSMAGILASVLISVYSPRRSLPF*CSSLCL Trigger: CAGGCACAGAGAGCTGCAGCAAAAAGGCAGAGATCT...TCTTGGTGAGTAAACAGATATGAGGACTGAAGCTAGGATCCCAGCCATGGAGAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000168841.3 |
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| 3UTR-3UTR CCA 90 bp | CACTCAGGAGCAACAGTGCATATCTCCTCCTTCTCACTCAGTCCTGGCAGCCTCTATATCCATGAGCAGTaGTTTGAAACCTTCCTAATC | + |
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Preference number: 2 (lower is better) Translates to: HSGATVHISSFSLSPGSLYIHEQ*FETFLI Trigger: GATTAGGAAGGTTTCAAACCACTGCTCATGGATATA...GAGGCTGCCAGGACTGAGTGAGAAGGAGGAGATATGCACTGTTGCTCCTGAGTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
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| 3UTR-3UTR CCA 90 bp | GGAGTTGGCTTTTCTCCTTATTCTTGGTCATTCACTACTTTTAGCCTTCTGCTCCTTCTCACTCAGTCCTaGCAGCCTCATGCCCTCCTT | + |
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Preference number: 2 (lower is better) Translates to: GVGFSPYSWSFTTFSLLLLLTQS*QPHALL Trigger: AAGGAGGGCATGAGGCTGCCAGGACTGAGTGAGAAG...GAGCAGAAGGCTAAAAGTAGTGAATGACCAAGAATAAGGAGAAAAGCCAACTCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
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| 3UTR CAA 90 bp | CATATGCTAGGATCCAGACGGACCTTAGAGTCTAAATCACCATGCTaGGATAAGCCCACAGACCACAAACCACAAGTCCCTGTTAATCCT | + |
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Preference number: 2 (lower is better) Translates to: HMLGSRRTLESKSPC*DKPTDHKPQVPVNP Trigger: AGGATTAACAGGGACTTGTGGTTTGTGGTCTGTGGGCTTATCCAAGCATGGTGATTTAGACTCTAAGGTCCGTCTGGATCCTAGCATATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000165984.3 ENSMUST00000168841.3 |
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| 3UTR-3UTR TCA 90 bp | AAGCACACCACTTCCTCTGTCCCACAGATCTCTGCCTTTTTGCTGCAGCTCTCTAATGAGAAAGAAATTTaGGAGCCCTGCTCACTTTCA | + |
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Preference number: 2 (lower is better) Translates to: KHTTSSVPQISAFLLQLSNEKEI*EPCSLS Trigger: TGAAAGTGAGCAGGGCTCTCAAATTTCTTTCTCATT...AGAGAGCTGCAGCAAAAAGGCAGAGATCTGTGGGACAGAGGAAGTGGTGTGCTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
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| 3UTR-3UTR TCA 90 bp | AGGGCAGCCATCCACCTGAATAGGGGAATAAGGGGTGGAATTGGAGATGGGAGATGGAAGAAGCACAGTTaGAGAAATTCTTGCATATCT | + |
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Preference number: 2 (lower is better) Translates to: RAAIHLNRGIRGGIGDGRWKKHS*RNSCIS Trigger: AGATATGCAAGAATTTCTTCAACTGTGCTTCTTCCA...TCTCCCATCTCCAATTCCACCCCTTATTCCCCTATTCAGGTGGATGGCTGCCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171719.8 |
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| 3UTR-3UTR CCA 90 bp | ACCACTTCCTCTGTCCCACAGATCTCTGCCTTTTTGCTGCAGCTCTCTGTGCCTTCATGTAAGGAACTGTaGCTTGAGAAACATATCAAC | + |
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Preference number: 2 (lower is better) Translates to: TTSSVPQISAFLLQLSVPSCKEL*LEKHIN Trigger: GTTGATATGTTTCTCAAGCCACAGTTCCTTACATGA...AGGCACAGAGAGCTGCAGCAAAAAGGCAGAGATCTGTGGGACAGAGGAAGTGGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
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| 3UTR-3UTR CCA 90 bp | TCAGCATTTTATTTAACAAATAACCCCCTGACCCAGTGGCTTATCATAGTGGACCCTCTTCTCCATGGCTaGGATCCTAGCTTCAGTCCT | + |
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Preference number: 2 (lower is better) Translates to: SAFYLTNNPLTQWLIIVDPLLHG*DPSFSP Trigger: AGGACTGAAGCTAGGATCCCAGCCATGGAGAAGAGG...GTCCACTATGATAAGCCACTGGGTCAGGGGGTTATTTGTTAAATAAAATGCTGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000168841.3 |
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| 3UTR-3UTR TCA 90 bp | GGAGTTGGCTTTTCTCCTTATTCTTGGTCATTCACTACTTTTAGCCTTCTGCTCTGTGAAAGGGTCATTTaGCCCCCACATAGGGATCAT | + |
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Preference number: 2 (lower is better) Translates to: GVGFSPYSWSFTTFSLLLCERVI*PPHRDH Trigger: ATGATCCCTATGTGGGGGTCAAATGACCCTTTCACA...GAGCAGAAGGCTAAAAGTAGTGAATGACCAAGAATAAGGAGAAAAGCCAACTCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
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| 3UTR-3UTR GCA 90 bp | TTCCTCAGTGCTAAGGCATCCATTTTGCTTCTGATTCTATGTAGTTCTAAGCACGTCCTGGCAGCCTCATaGCCTCCTTTCTTAAATTCC | + |
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Preference number: 2 (lower is better) Translates to: FLSAKASILLLILCSSKHVLAAS*PPFLNS Trigger: GGAATTTAAGAAAGGAGGGCATGAGGCTGCCAGGAC...GTGCTTAGAACTACATAGAATCAGAAGCAAAATGGATGCCTTAGCACTGAGGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
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| 3UTR-3UTR GCA 90 bp | TCAGCATTTTATTTAACAAATAACCCCCTGACCCAGTGGCTTATCATAGTGGACGAGGAAAGAGGCAGTTaGAAAGGTACTGAGGAGGCA | + |
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Preference number: 2 (lower is better) Translates to: SAFYLTNNPLTQWLIIVDEERGS*KGTEEA Trigger: TGCCTCCTCAGTACCTTTGCAACTGCCTCTTTCCTC...GTCCACTATGATAAGCCACTGGGTCAGGGGGTTATTTGTTAAATAAAATGCTGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000168841.3 |
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| 3UTR-3UTR GCA 90 bp | TCTTATATCACAGTCCTTCATAGGGCAGCCATCCACCTGAATAGGGGAATAAGGTTGAAAACACATGTGTaGCTTTCTTCTCCTGGCCAT | + |
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Preference number: 2 (lower is better) Translates to: SYITVLHRAAIHLNRGIRLKTHV*LSSPGH Trigger: ATGGCCAGGAGAAGAAAGGCACACATGTGTTTTCAA...CCTTATTCCCCTATTCAGGTGGATGGCTGCCCTATGAAGGACTGTGATATAAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171719.8 |
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| 3UTR-3UTR CCA 90 bp | GTGATACTCTCATCCCCTACTTCTTTCAGAAATTTCTTCTCATCATGTGGTAGCGCCTTCTGCTCTCCCTaGAAAGCAGAAGGAAAGATC | + |
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Preference number: 2 (lower is better) Translates to: VILSSPTSFRNFFSSCGSAFCSP*KAEGKI Trigger: GATCTTTCCTTCTGCTTTCCAGGGAGAGCAGAAGGC...GCTACCACATGATGAGAAGAAATTTCTGAAAGAAGTAGGGGATGAGAGTATCAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000165984.3 ENSMUST00000168841.3 |
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| 3UTR-3UTR TCA 90 bp | TTCCTCAGTGCTAAGGCATCCATTTTGCTTCTGATTCTATGTAGTTCTAAGCACTGTGAAAGGGTCATTTaGCCCCCACATAGGGATCAT | + |
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Preference number: 2 (lower is better) Translates to: FLSAKASILLLILCSSKHCERVI*PPHRDH Trigger: ATGATCCCTATGTGGGGGTCAAATGACCCTTTCACA...GTGCTTAGAACTACATAGAATCAGAAGCAAAATGGATGCCTTAGCACTGAGGAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
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| 3UTR-3UTR GCA 90 bp | GTGATACTCTCATCCCCTACTTCTTTCAGAAATTTCTTCTCATCATGTGGTAGCACTCAGGAGCAACAGTaGATATCTCCTCCTTCTCAC | + |
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Preference number: 2 (lower is better) Translates to: VILSSPTSFRNFFSSCGSTQEQQ*ISPPSH Trigger: GTGAGAAGGAGGAGATATGCACTGTTGCTCCTGAGT...GCTACCACATGATGAGAAGAAATTTCTGAAAGAAGTAGGGGATGAGAGTATCAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000165984.3 ENSMUST00000168841.3 |
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| 3UTR-3UTR GCA 90 bp | CAGGGAAGACATTTTTCTTATGAGAGGAGTTTCTCTAACTTCTCTCCTTTGCATGAGGAAAGAGGCAGTTaGAAAGGTACTGAGGAGGCA | + |
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Preference number: 2 (lower is better) Translates to: QGRHFSYERSFSNFSPLHEERGS*KGTEEA Trigger: TGCCTCCTCAGTACCTTTGCAACTGCCTCTTTCCTC...ATGCAAAGGAGAGAAGTTAGAGAAACTCCTCTCATAAGAAAAATGTCTTCCCTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000165984.3 ENSMUST00000168841.3 |
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| 3UTR-3UTR GCA 90 bp | TCAGCATTTTATTTAACAAATAACCCCCTGACCCAGTGGCTTATCATAGTGGACGTCTTTGAGGCTTGTTaGTATGTACAAACTGCTCCC | + |
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Preference number: 2 (lower is better) Translates to: SAFYLTNNPLTQWLIIVDVFEAC*YVQTAP Trigger: GGGAGCAGTTTGTACATAGCAACAAGCCTCAAAGAC...GTCCACTATGATAAGCCACTGGGTCAGGGGGTTATTTGTTAAATAAAATGCTGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000168841.3 |
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| 3UTR-3UTR GCA 90 bp | TTCATGTTTGGCTATTCCATATACACCTTTCCCAGGAAGAGGTTGAGAGATAAAACTCAGGAGCAACAGTaGATATCTCCTCCTTCTCAC | + |
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Preference number: 2 (lower is better) Translates to: FMFGYSIYTFPRKRLRDKTQEQQ*ISPPSH Trigger: GTGAGAAGGAGGAGATATGCACTGTTGCTCCTGAGT...TTTATCTCTCAACCTCTTCCTGGGAAAGGTGTATATGGAATAGCCAAACATGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
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| 3UTR-3UTR CCA 90 bp | TTTTTCATAGATGGCTTCTGTCATTCCCTCCCTTCAGACCTCGATGGAAAATTATCACCCAAGAAATGGTaGGTTGGAAGAAGCACAGTT | + |
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Preference number: 2 (lower is better) Translates to: FFIDGFCHSLPSDLDGKLSPKKW*VGRSTV Trigger: AACTGTGCTTCTTCCAACCCACCATTTCTTGGGTGA...TAATTTTCCATCGAGGTCTGAAGGGAGGGAATGACAGAAGCCATCTATGAAAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000171719.8 |
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| 3UTR-3UTR CCA 90 bp | GGGAATAAGGGGTGGAATTGGAGATGGGAGATAGATGCTGGGTATATAAATGAATTATCACCCAAGAAATaGTGGGTTGGAAGAAGCACA | + |
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Preference number: 2 (lower is better) Translates to: GNKGWNWRWEIDAGYINELSPKK*WVGRST Trigger: TGTGCTTCTTCCAACCCACCATTTCTTGGGTGATAA...TTCATTTATATACCCAGCATCTATCTCCCATCTCCAATTCCACCCCTTATTCCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171719.8 |
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| 3UTR-3UTR CCA 90 bp | GTTTTTCATAGATGGCTTCTGTCATTCCCTCCCTTCAGACCTCGATGGAAAATTAATAAGGGGTGGAATTaGAGATGGGAGATAGATGCT | + |
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Preference number: 2 (lower is better) Translates to: VFHRWLLSFPPFRPRWKINKGWN*RWEIDA Trigger: AGCATCTATCTCCCATCTCCAATTCCACCCCTTATT...AATTTTCCATCGAGGTCTGAAGGGAGGGAATGACAGAAGCCATCTATGAAAAAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000171719.8 |
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| 3UTR CAA 90 bp | GTTTTCATGTTTGGCTATTCCATATACACCTTTCCCAGGAAGAGGTaGAGAGATAAATGCTATGAGGAAAGAGGCAGTTGCAAAGGTACT | + |
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Preference number: 2 (lower is better) Translates to: VFMFGYSIYTFPRKR*RDKCYEERGSCKGT Trigger: AGTACCTTTGCAACTGCCTCTTTCCTCATAGCATTTATCTCTCAACCTCTTCCTGGGAAAGGTGTATATGGAATAGCCAAACATGAAAAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
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| 3UTR-3UTR GCA 90 bp | TACTCAAATGAGGTTTCCAACAACCTATTACAGTTTCTAGATTTTCCACAACCTGTCCTGGCAGCCTCATaGCCTCCTTTCTTAAATTCC | + |
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Preference number: 2 (lower is better) Translates to: YSNEVSNNLLQFLDFPQPVLAAS*PPFLNS Trigger: GGAATTTAAGAAAGGAGGGCATGAGGCTGCCAGGAC...AGGTTGTGGAAAATCTAGAAACTGTAATAGGTTGTTGGAAACCTCATTTGAGTA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
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| 3UTR-3UTR CCA 90 bp | AATTTGAGAGCCCTGCTCACTTTCATTTCCATTTTCACTCAGGAGCAACAGTGCTATATCCATGAGCAGTaGTTTGAAACCTTCCTAATC | + |
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Preference number: 2 (lower is better) Translates to: NLRALLTFISIFTQEQQCYIHEQ*FETFLI Trigger: GATTAGGAAGGTTTCAAACCACTGCTCATGGATATA...GCACTGTTGCTCCTGAGTGAAAATGGAAATGAAAGTGAGCAGGGCTCTCAAATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
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| 3UTR-3UTR CCA 90 bp | ATTATCATTAAAATGAAACTGTTAGGCTATCTGAAGGTGATACTCTCATCCCCTGCCTTCTGCTCTCCCTaGAAAGCAGAAGGAAAGATC | + |
|
Preference number: 2 (lower is better) Translates to: IIIKMKLLGYLKVILSSPAFCSP*KAEGKI Trigger: GATCTTTCCTTCTGCTTTCCAGGGAGAGCAGAAGGC...AGGGGATGAGAGTATCACCTTCAGATAGCCTAACAGTTTCATTTTAATGATAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000165984.3 ENSMUST00000168841.3 |
||
| 3UTR-3UTR CCA 90 bp | AAATTAGAAATAGAGGCTGACAATAGGGAGGTGTTGCACTTCTTATATCACAGTGGGTGGAATTGGAGATaGGAGATAGATGCTGGGTAT | + |
|
Preference number: 2 (lower is better) Translates to: KLEIEADNREVLHFLYHSGWNWR*EIDAGY Trigger: ATACCCAGCATCTATCTCCCATCTCCAATTCCACCC...ACTGTGATATAAGAAGTGCAACACCTCCCTATTGTCAGCCTCTATTTCTAATTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171719.8 |
||
| 3UTR-3UTR TCA 90 bp | TTCAGTCACGGCATAATTATAACGTTCTGGGCACCTGATTTAAAGGTCTCTATTACCTTCCTAATCCTGTaGCCCTTTAATACAGTTCCT | + |
|
Preference number: 2 (lower is better) Translates to: FSHGIIITFWAPDLKVSITFLIL*PFNTVP Trigger: AGGAACTGTATTAAAGGGTCACAGGATTAGGAAGGT...AATAGAGACCTTTAAATCAGGTGCCCAGAACGTTATAATTATGCCGTGACTGAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
||
| 3UTR-3UTR TCA 90 bp | CCTGATGAAGGAGTTGGCTTTTCTCCTTATTCTTGGTCATTCACTACTTTTAGCAATGAGAAAGAAATTTaGGAGCCCTGCTCACTTTCA | + |
|
Preference number: 2 (lower is better) Translates to: PDEGVGFSPYSWSFTTFSNEKEI*EPCSLS Trigger: TGAAAGTGAGCAGGGCTCTCAAATTTCTTTCTCATT...GCTAAAAGTAGTGAATGACCAAGAATAAGGAGAAAAGCCAACTCCTTCATCAGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
||
| 3UTR-3UTR TCA 90 bp | GTGATACTCTCATCCCCTACTTCTTTCAGAAATTTCTTCTCATCATGTGGTAGCTCCTTGATAAGAAGTTaGTTTGACTTAGGAGTTCCC | + |
|
Preference number: 2 (lower is better) Translates to: VILSSPTSFRNFFSSCGSSLIRS*FDLGVP Trigger: GGGAACTCCTAAGTCAAATCAACTTCTTATCAAGGA...GCTACCACATGATGAGAAGAAATTTCTGAAAGAAGTAGGGGATGAGAGTATCAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000165984.3 ENSMUST00000168841.3 |
||
| 3UTR-3UTR TCA 90 bp | TCACTACAAGATGGTACAATTTGGTTGATCTGCAGAAATCTGCTCAAAAGGATGGCAGGGACTAGTTATTaGAAACACATGTGTGCCTTT | + |
|
Preference number: 2 (lower is better) Translates to: SLQDGTIWLICRNLLKRMAGTSY*KHMCAF Trigger: AAAGGCACACATGTGTTTTCAATAACTAGTCCCTGC...CATCCTTTTGAGCAGATTTCTGCAGATCAACCAAATTGTACCATCTTGTAGTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171719.8 |
||
| 3UTR-3UTR GCA 90 bp | GTGATACTCTCATCCCCTACTTCTTTCAGAAATTTCTTCTCATCATGTGGTAGCAGGTTGAGAGATAAATaGTATGAGGAAAGAGGCAGT | + |
|
Preference number: 2 (lower is better) Translates to: VILSSPTSFRNFFSSCGSRLRDK*YEERGS Trigger: ACTGCCTCTTTCCTCATAGCATTTATCTCTCAACCT...GCTACCACATGATGAGAAGAAATTTCTGAAAGAAGTAGGGGATGAGAGTATCAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000165984.3 ENSMUST00000168841.3 |
||
| 3UTR-3UTR GCA 90 bp | TCAGCATTTTATTTAACAAATAACCCCCTGACCCAGTGGCTTATCATAGTGGACCAAGACTTCTGTCCCTaGTTCATCCAGTTTTGTTTT | + |
|
Preference number: 2 (lower is better) Translates to: SAFYLTNNPLTQWLIIVDQDFCP*FIQFCF Trigger: AAAACAAAACTGGATGAAGCAGGGACAGAAGTCTTG...GTCCACTATGATAAGCCACTGGGTCAGGGGGTTATTTGTTAAATAAAATGCTGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000168841.3 |
||
| 3UTR-3UTR GCA 90 bp | TGTATTCCCTTTGGCCTCATCCATCATAGTTTTACAGTCTACAGTGAACCATCTACAATAGGGAGGTGTTaGACTTCTTATATCACAGTC | + |
|
Preference number: 2 (lower is better) Translates to: CIPFGLIHHSFTVYSEPSTIGRC*TSYITV Trigger: GACTGTGATATAAGAAGTGCAACACCTCCCTATTGT...AGATGGTTCACTGTAGACTGTAAAACTATGATGGATGAGGCCAAAGGGAATACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171719.8 |
||
| 3UTR-3UTR CCA 90 bp | TGTATTCCCTTTGGCCTCATCCATCATAGTTTTACAGTCTACAGTGAACCATCTTTAGTTTTTCATAGATaGCTTCTGTCATTCCCTCCC | + |
|
Preference number: 2 (lower is better) Translates to: CIPFGLIHHSFTVYSEPSLVFHR*LLSFPP Trigger: GGGAGGGAATGACAGAAGCCATCTATGAAAAACTAA...AGATGGTTCACTGTAGACTGTAAAACTATGATGGATGAGGCCAAAGGGAATACA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000171719.8 |
||
| 3UTR-3UTR TCA 90 bp | ATGAAGGAGTTGGCTTTTCTCCTTATTCTTGGTCATTCACTACTTTTAGCCTTCAATGAGAAAGAAATTTaGGAGCCCTGCTCACTTTCA | + |
|
Preference number: 2 (lower is better) Translates to: MKELAFLLILGHSLLLAFNEKEI*EPCSLS Trigger: TGAAAGTGAGCAGGGCTCTCAAATTTCTTTCTCATT...GAAGGCTAAAAGTAGTGAATGACCAAGAATAAGGAGAAAAGCCAACTCCTTCAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
||
| 3UTR-3UTR TCA 90 bp | TTCATGTTTGGCTATTCCATATACACCTTTCCCAGGAAGAGGTTGAGAGATAAAAACCAGTTTATAACCTaGCAGAAACCTTTCCTCAGT | + |
|
Preference number: 2 (lower is better) Translates to: FMFGYSIYTFPRKRLRDKNQFIT*QKPFLS Trigger: ACTGAGGAAAGGTTTCTGTCAGGTTATAAACTGGTT...TTTATCTCTCAACCTCTTCCTGGGAAAGGTGTATATGGAATAGCCAAACATGAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
||
| 3UTR-3UTR CCA 90 bp | TCTCATCCCCTACTTCTTTCAGAAATTTCTTCTCATCATGTGGTAGCAAAGCCATATATCCATGAGCAGTaGTTTGAAACCTTCCTAATC | + |
|
Preference number: 2 (lower is better) Translates to: SHPLLLSEISSHHVVAKPYIHEQ*FETFLI Trigger: GATTAGGAAGGTTTCAAACCACTGCTCATGGATATA...TGGCTTTGCTACCACATGATGAGAAGAAATTTCTGAAAGAAGTAGGGGATGAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000165984.3 ENSMUST00000168841.3 |
||
| 3UTR-3UTR TCA 90 bp | TACTCAAATGAGGTTTCCAACAACCTATTACAGTTTCTAGATTTTCCACAACCTAACGTTCTGGGCACCTaGTTTAAAGGTCTCTATTGT | + |
|
Preference number: 2 (lower is better) Translates to: YSNEVSNNLLQFLDFPQPNVLGT*FKGLYC Trigger: ACAATAGAGACCTTTAAATCAGGTGCCCAGAACGTT...AGGTTGTGGAAAATCTAGAAACTGTAATAGGTTGTTGGAAACCTCATTTGAGTA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
||
| 3UTR-3UTR CCA 90 bp | CCTGATGAAGGAGTTGGCTTTTCTCCTTATTCTTGGTCATTCACTACTTTTAGCTGTATAAAAGGACTATaGTACTCAAATGAGGTTTCC | + |
|
Preference number: 2 (lower is better) Translates to: PDEGVGFSPYSWSFTTFSCIKGL*YSNEVS Trigger: GGAAACCTCATTTGAGTACCATAGTCCTTTTATACA...GCTAAAAGTAGTGAATGACCAAGAATAAGGAGAAAAGCCAACTCCTTCATCAGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
||
| 3UTR-3UTR CCA 90 bp | ATAAGAAACGCATTAGTGGACAGGGAAGAACATTTTTGGCTCAATTCAGGGAAGAACTATTTTCAACCTTaGCAAGATAAGAGCTCTTAC | + |
|
Preference number: 2 (lower is better) Translates to: IRNALVDREEHFWLNSGKNYFQP*QDKSSY Trigger: GTAAGAGCTCTTATCTTGCCAAGGTTGAAAATAGTT...CTTCCCTGAATTGAGCCAAAAATGTTCTTCCCTGTCCACTAATGCGTTTCTTAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000165984.3 ENSMUST00000168841.3 |
||
| 3UTR-3UTR CCA 90 bp | CAGGGAAGACATTTTTCTTATGAGAGGAGTTTCTCTAACTTCTCTCCTTTGCATATACAAGAAGAGATATaGTTCAGTCACGGCATAATT | + |
|
Preference number: 2 (lower is better) Translates to: QGRHFSYERSFSNFSPLHIQEEI*FSHGII Trigger: AATTATGCCGTGACTGAACCATATCTCTTCTTGTAT...ATGCAAAGGAGAGAAGTTAGAGAAACTCCTCTCATAAGAAAAATGTCTTCCCTG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000165984.3 ENSMUST00000168841.3 |
||
| 3UTR-3UTR CCA 90 bp | TACTCAAATGAGGTTTCCAACAACCTATTACAGTTTCTAGATTTTCCACAACCTATACAAGAAGAGATATaGTTCAGTCACGGCATAATT | + |
|
Preference number: 2 (lower is better) Translates to: YSNEVSNNLLQFLDFPQPIQEEI*FSHGII Trigger: AATTATGCCGTGACTGAACCATATCTCTTCTTGTAT...AGGTTGTGGAAAATCTAGAAACTGTAATAGGTTGTTGGAAACCTCATTTGAGTA 34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
||
| 3UTR GCA 72 bp | ACACCACTTCCTCTGTCCCACAGATCTCTGCCTTTTTaGTGCAGCTCTCTGTGCCTGATGAAGGAGTTGGCT | + |
|
Preference number: 3 (lower is better) Translates to: TPLPLSHRSLPF*CSSLCLMKELA Trigger: AGCCAACTCCTTCATCAGGCACAGAGAGCTGCAGCAAAAAGGCAGAGATCTGTGGGACAGAGGAAGTGGTGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
||
| 3UTR GCA 72 bp | CCACTTCCTCTGTCCCACAGATCTCTGCCTTTTTGCTaGAGCTCTCTGTGCCTGATGAAGGAGTTGGCTTTT | + |
|
Preference number: 3 (lower is better) Translates to: PLPLSHRSLPFC*SSLCLMKELAF Trigger: AAAAGCCAACTCCTTCATCAGGCACAGAGAGCTGCAGCAAAAAGGCAGAGATCTGTGGGACAGAGGAAGTGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
||
| 3UTR GCA 72 bp | CTCACTTTCATTTCCATTTTCACTCAGGAGCAACAGTaGATATCTCCTCCTTCTCACTCAGTCCTGGCAGCC | + |
|
Preference number: 3 (lower is better) Translates to: LTFISIFTQEQQ*ISPPSHSVLAA Trigger: GGCTGCCAGGACTGAGTGAGAAGGAGGAGATATGCACTGTTGCTCCTGAGTGAAAATGGAAATGAAAGTGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
||
| 3UTR-3UTR CAA 90 bp | AGGGCAGCCATCCACCTGAATAGGGGAATAAGGGGTGGAATTGGAGATGGGAGATTGGAAGAAGCACAGTaGAAGAAATTCTTGCATATC | + |
|
Preference number: 3 (lower is better) Translates to: RAAIHLNRGIRGGIGDGRLEEAQ*KKFLHI Trigger: GATATGCAAGAATTTCTTCAACTGTGCTTCTTCCAA...TCTCCCATCTCCAATTCCACCCCTTATTCCCCTATTCAGGTGGATGGCTGCCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171719.8 |
||
| 3UTR CCA 72 bp | AGTGGACATGGATTTCTTACTCCTCTTCTCCATGGCTaGGATCCTAGCTTCAGTCCTCATATCTGTTTACTC | + |
|
Preference number: 3 (lower is better) Translates to: SGHGFLTPLLHG*DPSFSPHICLL Trigger: GAGTAAACAGATATGAGGACTGAAGCTAGGATCCCAGCCATGGAGAAGAGGAGTAAGAAATCCATGTCCACT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168841.3 |
||
| 3UTR-3UTR CAA 90 bp | CTGACCCAGTGGCTTATCATAGTGGACATGGATTTCTTACTCCTCTTCTCCATGTTTCCCAGGAAGAGGTaGAGAGATAAATGCTATGAG | + |
|
Preference number: 3 (lower is better) Translates to: LTQWLIIVDMDFLLLFSMFPRKR*RDKCYE Trigger: CTCATAGCATTTATCTCTCAACCTCTTCCTGGGAAA...CATGGAGAAGAGGAGTAAGAAATCCATGTCCACTATGATAAGCCACTGGGTCAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168841.3 |
||
| 3UTR-3UTR CAA 90 bp | GTTTTTCATAGATGGCTTCTGTCATTCCCTCCCTTCAGACCTCGATGGAAAATTCCAAGAAATGGTGGGTaGGAAGAAGCACAGTTGAAG | + |
|
Preference number: 3 (lower is better) Translates to: VFHRWLLSFPPFRPRWKIPRNGG*EEAQLK Trigger: CTTCAACTGTGCTTCTTCCAACCCACCATTTCTTGG...AATTTTCCATCGAGGTCTGAAGGGAGGGAATGACAGAAGCCATCTATGAAAAAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000171719.8 |
||
| 3UTR TCA 72 bp | CAGCTCAGTCTTGCTGGGACTATAATCGGAAGAAATTaGTGTCACTTGTGTTTGTCTTCTAGCAGACGAGCT | + |
|
Preference number: 3 (lower is better) Translates to: QLSLAGTIIGRN*CHLCLSSSRRA Trigger: AGCTCGTCTGCTAGAAGACAAACACAAGTGACATCAATTTCTTCCGATTATAGTCCCAGCAAGACTGAGCTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168841.3 |
||
| 3UTR CCA 72 bp | CTTGGTCATTCACTACTTTTAGCCTTCTGCTCTCCCTaGAAAGCAGAAGGAAAGATCAAACAAGAGCCCTTA | + |
|
Preference number: 3 (lower is better) Translates to: LGHSLLLAFCSP*KAEGKIKQEPL Trigger: TAAGGGCTCTTGTTTGATCTTTCCTTCTGCTTTCCAGGGAGAGCAGAAGGCTAAAAGTAGTGAATGACCAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
||
| 3UTR CCA 72 bp | TCTTTCTGGGCATCTTTGTCAACACAAAAGGGCCTATaGCAGGGACTAGTTATTGAAAACACATGTGTGCCT | + |
|
Preference number: 3 (lower is better) Translates to: SFWASLSTQKGL*QGLVIENTCVP Trigger: AGGCACACATGTGTTTTCAATAACTAGTCCCTGCCATAGGCCCTTTTGTGTTGACAAAGATGCCCAGAAAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171719.8 |
||
| 3UTR-3UTR CAA 90 bp | GGGAATAAGGGGTGGAATTGGAGATGGGAGATAGATGCTGGGTATATAAATGAATCTTTCTGGGCATCTTaGTCAACACAAAAGGGCCTA | + |
|
Preference number: 3 (lower is better) Translates to: GNKGWNWRWEIDAGYINESFWAS*STQKGL Trigger: TAGGCCCTTTTGTGTTGACAAAGATGCCCAGAAAGA...TTCATTTATATACCCAGCATCTATCTCCCATCTCCAATTCCACCCCTTATTCCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171719.8 |
||
| 3UTR TCA 72 bp | AACCTTTCCTCAGTGCTAAGGCATCCATTTTGCTTCTaGTTCTATGTAGTTCTAAGCACACCACTTCCTCTG | + |
|
Preference number: 3 (lower is better) Translates to: NLSSVLRHPFCF*FYVVLSTPLPL Trigger: CAGAGGAAGTGGTGTGCTTAGAACTACATAGAATCAGAAGCAAAATGGATGCCTTAGCACTGAGGAAAGGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
||
| 3UTR GCA 72 bp | AAGGAGTTTGGTGAAAGAGCAAGTACACCACTTGCATaGACACATGACATCTATGTAGCATATGCTAGGATC | + |
|
Preference number: 3 (lower is better) Translates to: KEFGERASTPLA*THDIYVAYARI Trigger: GATCCTAGCATATGCTACATAGATGTCATGTGTGCATGCAAGTGGTGTACTTGCTCTTTCACCAAACTCCTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000165984.3 ENSMUST00000168841.3 |
||
| 3UTR TCA 72 bp | TCTGTTTACTCACCAAGATGGAGGGCTACATTTTACTaGAAATTGTCTCAGCTCAGTCTTGCTGGGACTATA | + |
|
Preference number: 3 (lower is better) Translates to: SVYSPRWRATFY*KLSQLSLAGTI Trigger: TATAGTCCCAGCAAGACTGAGCTGAGACAATTTTCAGTAAAATGTAGCCCTCCATCTTGGTGAGTAAACAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168841.3 |
||
| 3UTR GCA 72 bp | CTCCTTATTCTTGGTCATTCACTACTTTTAGCCTTCTaGTCTCCCTGGAAAGCAGAAGGAAAGATCAAACAA | + |
|
Preference number: 3 (lower is better) Translates to: LLILGHSLLLAF*SPWKAEGKIKQ Trigger: TTGTTTGATCTTTCCTTCTGCTTTCCAGGGAGAGCAGAAGGCTAAAAGTAGTGAATGACCAAGAATAAGGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
||
| 3UTR-3UTR CAA 90 bp | TCTCATCCCCTACTTCTTTCAGAAATTTCTTCTCATCATGTGGTAGCAAAGCCAGTAAGGAACTGTGGCTaGAGAAACATATCAACAGTG | + |
|
Preference number: 3 (lower is better) Translates to: SHPLLLSEISSHHVVAKPVRNCG*RNISTV Trigger: CACTGTTGATATGTTTCTCAAGCCACAGTTCCTTAC...TGGCTTTGCTACCACATGATGAGAAGAAATTTCTGAAAGAAGTAGGGGATGAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000165984.3 ENSMUST00000168841.3 |
||
| 3UTR-3UTR CAA 90 bp | TTCCTCAGTGCTAAGGCATCCATTTTGCTTCTGATTCTATGTAGTTCTAAGCACTGCCTGATGAAGGAGTaGGCTTTTCTCCTTATTCTT | + |
|
Preference number: 3 (lower is better) Translates to: FLSAKASILLLILCSSKHCLMKE*AFLLIL Trigger: AAGAATAAGGAGAAAAGCCAACTCCTTCATCAGGCA...GTGCTTAGAACTACATAGAATCAGAAGCAAAATGGATGCCTTAGCACTGAGGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
||
| 3UTR-3UTR CAA 90 bp | TCTCATCCCCTACTTCTTTCAGAAATTTCTTCTCATCATGTGGTAGCAAAGCCATGCCTGATGAAGGAGTaGGCTTTTCTCCTTATTCTT | + |
|
Preference number: 3 (lower is better) Translates to: SHPLLLSEISSHHVVAKPCLMKE*AFLLIL Trigger: AAGAATAAGGAGAAAAGCCAACTCCTTCATCAGGCA...TGGCTTTGCTACCACATGATGAGAAGAAATTTCTGAAAGAAGTAGGGGATGAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000165984.3 ENSMUST00000168841.3 |
||
| 3UTR-3UTR CAA 90 bp | ATGAAGGAGTTGGCTTTTCTCCTTATTCTTGGTCATTCACTACTTTTAGCCTTCGTAAGGAACTGTGGCTaGAGAAACATATCAACAGTG | + |
|
Preference number: 3 (lower is better) Translates to: MKELAFLLILGHSLLLAFVRNCG*RNISTV Trigger: CACTGTTGATATGTTTCTCAAGCCACAGTTCCTTAC...GAAGGCTAAAAGTAGTGAATGACCAAGAATAAGGAGAAAAGCCAACTCCTTCAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
||
| 3UTR CCA 72 bp | TCAGCATTTTATTTAACAAATAACCCCCTGACCCAGTaGCTTATCATAGTGGACATGGATTTCTTACTCCTC | + |
|
Preference number: 3 (lower is better) Translates to: SAFYLTNNPLTQ*LIIVDMDFLLL Trigger: GAGGAGTAAGAAATCCATGTCCACTATGATAAGCCACTGGGTCAGGGGGTTATTTGTTAAATAAAATGCTGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000168841.3 |
||
| 3UTR-3UTR CAA 90 bp | GTGATACTCTCATCCCCTACTTCTTTCAGAAATTTCTTCTCATCATGTGGTAGCATTGGTAAAATAATATaGCCACAAGGCAAAGAGGCT | + |
|
Preference number: 3 (lower is better) Translates to: VILSSPTSFRNFFSSCGSIGKII*PQGKEA Trigger: AGCCTCTTTGCCTTGTGGCAATATTATTTTACCAAT...GCTACCACATGATGAGAAGAAATTTCTGAAAGAAGTAGGGGATGAGAGTATCAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000165984.3 ENSMUST00000168841.3 |
||
| 3UTR TCA 72 bp | TTCTTCTCATCATGTGGTAGCAAAGCCAGACCACAATaGCTTTTAACTCTCAAGTTGTCTGTTCCTTTGTTT | + |
|
Preference number: 3 (lower is better) Translates to: FFSSCGSKARPQ*LLTLKLSVPLF Trigger: AAACAAAGGAACAGACAACTTGAGAGTTAAAAGTCATTGTGGTCTGGCTTTGCTACCACATGATGAGAAGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000165984.3 ENSMUST00000168841.3 |
||
| 3UTR GCA 72 bp | GGCTACATTTTACTGAAAATTGTCTCAGCTCAGTCTTaGTGGGACTATAATCGGAAGAAATTGATGTCACTT | + |
|
Preference number: 3 (lower is better) Translates to: GYILLKIVSAQS*WDYNRKKLMSL Trigger: AAGTGACATCAATTTCTTCCGATTATAGTCCCAGCAAGACTGAGCTGAGACAATTTTCAGTAAAATGTAGCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000168841.3 |
||
| 3UTR-3UTR CAA 90 bp | GGAGAAGGAACCAAAGAGCAAGACATTTCTTCCCAAATGAGAAAGAAATTTGAGATTGGTAAAATAATATaGCCACAAGGCAAAGAGGCT | + |
|
Preference number: 3 (lower is better) Translates to: GEGTKEQDISSQMRKKFEIGKII*PQGKEA Trigger: AGCCTCTTTGCCTTGTGGCAATATTATTTTACCAAT...CTCAAATTTCTTTCTCATTTGGGAAGAAATGTCTTGCTCTTTGGTTCCTTCTCC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
||
| 3UTR-3UTR CAA 90 bp | ATTATCATTAAAATGAAACTGTTAGGCTATCTGAAGGTGATACTCTCATCCCCTGTAAGGAACTGTGGCTaGAGAAACATATCAACAGTG | + |
|
Preference number: 3 (lower is better) Translates to: IIIKMKLLGYLKVILSSPVRNCG*RNISTV Trigger: CACTGTTGATATGTTTCTCAAGCCACAGTTCCTTAC...AGGGGATGAGAGTATCACCTTCAGATAGCCTAACAGTTTCATTTTAATGATAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000165984.3 ENSMUST00000168841.3 |
||
| 3UTR GCA 72 bp | AAACAAAAGTATCTCAATACTGCATGTTCACTAAGTTaGATGGTTATCAAAGGAGGCAGCAAGTCTACAGTT | + |
|
Preference number: 3 (lower is better) Translates to: KQKYLNTACSLS*MVIKGGSKSTV Trigger: AACTGTAGACTTGCTGCCTCCTTTGATAACCATGCAACTTAGTGAACATGCAGTATTGAGATACTTTTGTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171719.8 |
||
| 3UTR CCA 72 bp | GAGATATGGTTCAGTCACGGCATAATTATAACGTTCTaGGCACCTGATTTAAAGGTCTCTATTGTTCAATAT | + |
|
Preference number: 3 (lower is better) Translates to: EIWFSHGIIITF*APDLKVSIVQY Trigger: ATATTGAACAATAGAGACCTTTAAATCAGGTGCCCAGAACGTTATAATTATGCCGTGACTGAACCATATCTC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
||
| CDS-3UTR CCA 90 bp | CACTCAGGAGCAACAGTGCATATCTCCTCCTTCTCACTCAGTCCTGGCAGCCTCTACCAGGGAGTAGAGTaGAGGCAGGATCCAAGCTCC | + |
|
Preference number: 4 (lower is better) Translates to: HSGATVHISSFSLSPGSLYQGVE*RQDPSS Trigger: GGAGCTTGGATCCTGCCTCCACTCTACTCCCTGGTA...GAGGCTGCCAGGACTGAGTGAGAAGGAGGAGATATGCACTGTTGCTCCTGAGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
||
| CDS-3UTR TCA 90 bp | CACTCAGGAGCAACAGTGCATATCTCCTCCTTCTCACTCAGTCCTGGCAGCCTCCAGCCACCACCCAAGTaGCTACACTTGTTATCACCC | + |
|
Preference number: 4 (lower is better) Translates to: HSGATVHISSFSLSPGSLQPPPK*LHLLSP Trigger: GGGTGATAACAAGTGTAGTCACTTGGGTGGTGGCTG...GAGGCTGCCAGGACTGAGTGAGAAGGAGGAGATATGCACTGTTGCTCCTGAGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
||
| CDS-3UTR CCA 90 bp | ACCACTTCCTCTGTCCCACAGATCTCTGCCTTTTTGCTGCAGCTCTCTGTGCCTTACCAGGGAGTAGAGTaGAGGCAGGATCCAAGCTCC | + |
|
Preference number: 4 (lower is better) Translates to: TTSSVPQISAFLLQLSVPYQGVE*RQDPSS Trigger: GGAGCTTGGATCCTGCCTCCACTCTACTCCCTGGTA...AGGCACAGAGAGCTGCAGCAAAAAGGCAGAGATCTGTGGGACAGAGGAAGTGGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
||
| CDS-3UTR TCA 90 bp | ACCACTTCCTCTGTCCCACAGATCTCTGCCTTTTTGCTGCAGCTCTCTGTGCCTCAGCCACCACCCAAGTaGCTACACTTGTTATCACCC | + |
|
Preference number: 4 (lower is better) Translates to: TTSSVPQISAFLLQLSVPQPPPK*LHLLSP Trigger: GGGTGATAACAAGTGTAGTCACTTGGGTGGTGGCTG...AGGCACAGAGAGCTGCAGCAAAAAGGCAGAGATCTGTGGGACAGAGGAAGTGGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
||
| CDS-3UTR GCA 90 bp | CACTCAGGAGCAACAGTGCATATCTCCTCCTTCTCACTCAGTCCTGGCAGCCTCAAAGACCCACTCATTTaGAGCATAGTGAGCCCAGAA | + |
|
Preference number: 4 (lower is better) Translates to: HSGATVHISSFSLSPGSLKDPLI*SIVSPE Trigger: TTCTGGGCTCACTATGCTGCAAATGAGTGGGTCTTT...GAGGCTGCCAGGACTGAGTGAGAAGGAGGAGATATGCACTGTTGCTCCTGAGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
||
| CDS-3UTR GCA 90 bp | AATTTGAGAGCCCTGCTCACTTTCATTTCCATTTTCACTCAGGAGCAACAGTGCCCAACCGAGACCTCTTaGTCCCCAGTGGAAGGAGTG | + |
|
Preference number: 4 (lower is better) Translates to: NLRALLTFISIFTQEQQCPTETS*SPVEGV Trigger: CACTCCTTCCACTGGGGAGCAAGAGGTCTCGGTTGG...GCACTGTTGCTCCTGAGTGAAAATGGAAATGAAAGTGAGCAGGGCTCTCAAATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
||
| CDS-3UTR CCA 90 bp | ACCACTTCCTCTGTCCCACAGATCTCTGCCTTTTTGCTGCAGCTCTCTGTGCCTATTCCCAAGGATTCCTaGAAGGTGGTCAAGAAGAGA | + |
|
Preference number: 4 (lower is better) Translates to: TTSSVPQISAFLLQLSVPIPKDS*KVVKKR Trigger: TCTCTTCTTGACCACCTTCCAGGAATCCTTGGGAAT...AGGCACAGAGAGCTGCAGCAAAAAGGCAGAGATCTGTGGGACAGAGGAAGTGGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
||
| 3UTR CAA 72 bp | GGATCCAGACGGACCTTAGAGTCTAAATCACCATGCTaGGATAAGCCCACAGACCACAAACCACAAGTCCCT | + |
|
Preference number: 4 (lower is better) Translates to: GSRRTLESKSPC*DKPTDHKPQVP Trigger: AGGGACTTGTGGTTTGTGGTCTGTGGGCTTATCCAAGCATGGTGATTTAGACTCTAAGGTCCGTCTGGATCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000165984.3 ENSMUST00000168841.3 |
||
| CDS-3UTR CCA 90 bp | CACTCAGGAGCAACAGTGCATATCTCCTCCTTCTCACTCAGTCCTGGCAGCCTCAGGATTCCTGGAAGGTaGTCAAGAAGAGAACAATAT | + |
|
Preference number: 4 (lower is better) Translates to: HSGATVHISSFSLSPGSLRIPGR*SRREQY Trigger: ATATTGTTCTCTTCTTGACCACCTTCCAGGAATCCT...GAGGCTGCCAGGACTGAGTGAGAAGGAGGAGATATGCACTGTTGCTCCTGAGTG 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
||
| CDS-3UTR CCA 90 bp | GTTTTTCATAGATGGCTTCTGTCATTCCCTCCCTTCAGACCTCGATGGAAAATTTACCAGGGAGTAGAGTaGAGGCAGGATCCAAGCTCC | + |
|
Preference number: 4 (lower is better) Translates to: VFHRWLLSFPPFRPRWKIYQGVE*RQDPSS Trigger: GGAGCTTGGATCCTGCCTCCACTCTACTCCCTGGTA...AATTTTCCATCGAGGTCTGAAGGGAGGGAATGACAGAAGCCATCTATGAAAAAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000171719.8 |
||
| CDS-3UTR TCA 90 bp | GTTTTTCATAGATGGCTTCTGTCATTCCCTCCCTTCAGACCTCGATGGAAAATTCAGCCACCACCCAAGTaGCTACACTTGTTATCACCC | + |
|
Preference number: 4 (lower is better) Translates to: VFHRWLLSFPPFRPRWKIQPPPK*LHLLSP Trigger: GGGTGATAACAAGTGTAGTCACTTGGGTGGTGGCTG...AATTTTCCATCGAGGTCTGAAGGGAGGGAATGACAGAAGCCATCTATGAAAAAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000171719.8 |
||
| CDS-3UTR GCA 90 bp | ACCACTTCCTCTGTCCCACAGATCTCTGCCTTTTTGCTGCAGCTCTCTGTGCCTGATAGATATCAGTCATaGTCTTCAGCTTTTTACAGC | + |
|
Preference number: 4 (lower is better) Translates to: TTSSVPQISAFLLQLSVPDRYQS*SSAFYS Trigger: GCTGTAAAAAGCTGAAGAGCATGACTGATATCTATC...AGGCACAGAGAGCTGCAGCAAAAAGGCAGAGATCTGTGGGACAGAGGAAGTGGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
||
| CDS-3UTR GCA 90 bp | CACTCAGGAGCAACAGTGCATATCTCCTCCTTCTCACTCAGTCCTGGCAGCCTCAGACGTTTAGCAATGTaGTTTCTGAAAAATATGGAG | + |
|
Preference number: 4 (lower is better) Translates to: HSGATVHISSFSLSPGSLRRLAM*FLKNME Trigger: CTCCATATTTTTCAGAAAGCACATTGCTAAACGTCT...GAGGCTGCCAGGACTGAGTGAGAAGGAGGAGATATGCACTGTTGCTCCTGAGTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
||
| CDS-3UTR GCA 90 bp | TCACTACAAGATGGTACAATTTGGTTGATCTGCAGAAATCTGCTCAAAAGGATGCCAACCGAGACCTCTTaGTCCCCAGTGGAAGGAGTG | + |
|
Preference number: 4 (lower is better) Translates to: SLQDGTIWLICRNLLKRMPTETS*SPVEGV Trigger: CACTCCTTCCACTGGGGAGCAAGAGGTCTCGGTTGG...CATCCTTTTGAGCAGATTTCTGCAGATCAACCAAATTGTACCATCTTGTAGTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171719.8 |
||
| CDS-3UTR CCA 90 bp | TTCCTCAGTGCTAAGGCATCCATTTTGCTTCTGATTCTATGTAGTTCTAAGCACTACCAGGGAGTAGAGTaGAGGCAGGATCCAAGCTCC | + |
|
Preference number: 4 (lower is better) Translates to: FLSAKASILLLILCSSKHYQGVE*RQDPSS Trigger: GGAGCTTGGATCCTGCCTCCACTCTACTCCCTGGTA...GTGCTTAGAACTACATAGAATCAGAAGCAAAATGGATGCCTTAGCACTGAGGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
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| CDS-3UTR CCA 90 bp | GATGGCTTCTGTCATTCCCTCCCTTCAGACCTCGATGGAAAATTAGAAATAGAGTCTCTGTCACCTGCATaGCCTGGTCTAAGTGCTTGT | + |
|
Preference number: 4 (lower is better) Translates to: DGFCHSLPSDLDGKLEIESLSPA*PGLSAC Trigger: ACAAGCACTTAGACCAGGCCATGCAGGTGACAGAGA...CTCTATTTCTAATTTTCCATCGAGGTCTGAAGGGAGGGAATGACAGAAGCCATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171719.8 |
||
| CDS-3UTR TCA 90 bp | GGAGAAGGAACCAAAGAGCAAGACATTTCTTCCCAAATGAGAAAGAAATTTGAGCCCAGAATGGTAATGTaGGCAGGAAGAGCAGGTCAG | + |
|
Preference number: 4 (lower is better) Translates to: GEGTKEQDISSQMRKKFEPRMVM*AGRAGQ Trigger: CTGACCTGCTCTTCCTGCTCACATTACCATTCTGGG...CTCAAATTTCTTTCTCATTTGGGAAGAAATGTCTTGCTCTTTGGTTCCTTCTCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
||
| CDS-3UTR GCA 90 bp | TTAAAGGTCTCTATTGTTCAATATATCCATGAGCAGTGGTTTGAAACCTTCCTACCAACCGAGACCTCTTaGTCCCCAGTGGAAGGAGTG | + |
|
Preference number: 4 (lower is better) Translates to: LKVSIVQYIHEQWFETFLPTETS*SPVEGV Trigger: CACTCCTTCCACTGGGGAGCAAGAGGTCTCGGTTGG...TAGGAAGGTTTCAAACCACTGCTCATGGATATATTGAACAATAGAGACCTTTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
||
| CDS-3UTR CCA 90 bp | TTCCTCAGTGCTAAGGCATCCATTTTGCTTCTGATTCTATGTAGTTCTAAGCACTCTCTGTCACCTGCATaGCCTGGTCTAAGTGCTTGT | + |
|
Preference number: 4 (lower is better) Translates to: FLSAKASILLLILCSSKHSLSPA*PGLSAC Trigger: ACAAGCACTTAGACCAGGCCATGCAGGTGACAGAGA...GTGCTTAGAACTACATAGAATCAGAAGCAAAATGGATGCCTTAGCACTGAGGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
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| 3UTR CAA 72 bp | CCTTTTTGCTGCAGCTCTCTGTGCCTGATGAAGGAGTaGGCTTTTCTCCTTATTCTTGGTCATTCACTACTT | + |
|
Preference number: 4 (lower is better) Translates to: PFCCSSLCLMKE*AFLLILGHSLL Trigger: AAGTAGTGAATGACCAAGAATAAGGAGAAAAGCCAACTCCTTCATCAGGCACAGAGAGCTGCAGCAAAAAGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
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| CDS-3UTR CCA 90 bp | GGGAATAAGGGGTGGAATTGGAGATGGGAGATAGATGCTGGGTATATAAATGAAATTCCCAAGGATTCCTaGAAGGTGGTCAAGAAGAGA | + |
|
Preference number: 4 (lower is better) Translates to: GNKGWNWRWEIDAGYINEIPKDS*KVVKKR Trigger: TCTCTTCTTGACCACCTTCCAGGAATCCTTGGGAAT...TTCATTTATATACCCAGCATCTATCTCCCATCTCCAATTCCACCCCTTATTCCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171719.8 |
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| 3UTR CAA 72 bp | TTTGGCTATTCCATATACACCTTTCCCAGGAAGAGGTaGAGAGATAAATGCTATGAGGAAAGAGGCAGTTGC | + |
|
Preference number: 4 (lower is better) Translates to: FGYSIYTFPRKR*RDKCYEERGSC Trigger: GCAACTGCCTCTTTCCTCATAGCATTTATCTCTCAACCTCTTCCTGGGAAAGGTGTATATGGAATAGCCAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
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| 3UTR CAA 72 bp | CCAAGATCACATTTAGGACAAAAGATCCAAAGGAGTTaGGTGAAAGAGCAAGTACACCACTTGCATGCACAC | + |
|
Preference number: 4 (lower is better) Translates to: PRSHLGQKIQRS*VKEQVHHLHAH Trigger: GTGTGCATGCAAGTGGTGTACTTGCTCTTTCACCAAACTCCTTTGGATCTTTTGTCCTAAATGTGATCTTGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000165984.3 ENSMUST00000168841.3 |
||
| CDS-3UTR TCA 90 bp | TTAAAGGTCTCTATTGTTCAATATATCCATGAGCAGTGGTTTGAAACCTTCCTACAGCCACCACCCAAGTaGCTACACTTGTTATCACCC | + |
|
Preference number: 4 (lower is better) Translates to: LKVSIVQYIHEQWFETFLQPPPK*LHLLSP Trigger: GGGTGATAACAAGTGTAGTCACTTGGGTGGTGGCTG...TAGGAAGGTTTCAAACCACTGCTCATGGATATATTGAACAATAGAGACCTTTAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
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| CDS-3UTR GCA 90 bp | CCTGATGAAGGAGTTGGCTTTTCTCCTTATTCTTGGTCATTCACTACTTTTAGCAAAGACCCACTCATTTaGAGCATAGTGAGCCCAGAA | + |
|
Preference number: 4 (lower is better) Translates to: PDEGVGFSPYSWSFTTFSKDPLI*SIVSPE Trigger: TTCTGGGCTCACTATGCTGCAAATGAGTGGGTCTTT...GCTAAAAGTAGTGAATGACCAAGAATAAGGAGAAAAGCCAACTCCTTCATCAGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
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| CDS-3UTR TCA 90 bp | GGACTAGTTATTGAAAACACATGTGTGCCTTTCTTCTCCTGGCCATATCCTCTTCGTGTAAATAGAGAATaGGATGTTGATAGTATGCCG | + |
|
Preference number: 4 (lower is better) Translates to: GLVIENTCVPFFSWPYPLRVNRE*DVDSMP Trigger: CGGCATACTATCAACATCTCATTCTCTATTTACACG...AAGAGGATATGGCCAGGAGAAGAAAGGCACACATGTGTTTTCAATAACTAGTCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171719.8 |
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| CDS-3UTR GCA 90 bp | TCTTATATCACAGTCCTTCATAGGGCAGCCATCCACCTGAATAGGGGAATAAGGAGACGTTTAGCAATGTaGTTTCTGAAAAATATGGAG | + |
|
Preference number: 4 (lower is better) Translates to: SYITVLHRAAIHLNRGIRRRLAM*FLKNME Trigger: CTCCATATTTTTCAGAAAGCACATTGCTAAACGTCT...CCTTATTCCCCTATTCAGGTGGATGGCTGCCCTATGAAGGACTGTGATATAAGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000171719.8 |
||
| CDS-3UTR CCA 90 bp | TTCCACAACCTGATAAAGCCTCCAAAATTAAACACAGATAGGAGAAGGAACCAAATTCCCAAGGATTCCTaGAAGGTGGTCAAGAAGAGA | + |
|
Preference number: 4 (lower is better) Translates to: FHNLIKPPKLNTDRRRNQIPKDS*KVVKKR Trigger: TCTCTTCTTGACCACCTTCCAGGAATCCTTGGGAAT...TTGGTTCCTTCTCCTATCTGTGTTTAATTTTGGAGGCTTTATCAGGTTGTGGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
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| CDS-3UTR CCA 90 bp | TACTCAAATGAGGTTTCCAACAACCTATTACAGTTTCTAGATTTTCCACAACCTTCTCTGTCACCTGCATaGCCTGGTCTAAGTGCTTGT | + |
|
Preference number: 4 (lower is better) Translates to: YSNEVSNNLLQFLDFPQPSLSPA*PGLSAC Trigger: ACAAGCACTTAGACCAGGCCATGCAGGTGACAGAGA...AGGTTGTGGAAAATCTAGAAACTGTAATAGGTTGTTGGAAACCTCATTTGAGTA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
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| CDS-3UTR TCA 90 bp | TTCCTCAGTGCTAAGGCATCCATTTTGCTTCTGATTCTATGTAGTTCTAAGCACCGTGTAAATAGAGAATaGGATGTTGATAGTATGCCG | + |
|
Preference number: 4 (lower is better) Translates to: FLSAKASILLLILCSSKHRVNRE*DVDSMP Trigger: CGGCATACTATCAACATCTCATTCTCTATTTACACG...GTGCTTAGAACTACATAGAATCAGAAGCAAAATGGATGCCTTAGCACTGAGGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
||
| CDS-3UTR TCA 90 bp | TTCCACAACCTGATAAAGCCTCCAAAATTAAACACAGATAGGAGAAGGAACCAACGTGTAAATAGAGAATaGGATGTTGATAGTATGCCG | + |
|
Preference number: 4 (lower is better) Translates to: FHNLIKPPKLNTDRRRNQRVNRE*DVDSMP Trigger: CGGCATACTATCAACATCTCATTCTCTATTTACACG...TTGGTTCCTTCTCCTATCTGTGTTTAATTTTGGAGGCTTTATCAGGTTGTGGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
||
| CDS-3UTR TCA 90 bp | TTCAGTCACGGCATAATTATAACGTTCTGGGCACCTGATTTAAAGGTCTCTATTCGTGTAAATAGAGAATaGGATGTTGATAGTATGCCG | + |
|
Preference number: 4 (lower is better) Translates to: FSHGIIITFWAPDLKVSIRVNRE*DVDSMP Trigger: CGGCATACTATCAACATCTCATTCTCTATTTACACG...AATAGAGACCTTTAAATCAGGTGCCCAGAACGTTATAATTATGCCGTGACTGAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
||
| CDS-3UTR GCA 90 bp | CCTGATGAAGGAGTTGGCTTTTCTCCTTATTCTTGGTCATTCACTACTTTTAGCGATAGATATCAGTCATaGTCTTCAGCTTTTTACAGC | + |
|
Preference number: 4 (lower is better) Translates to: PDEGVGFSPYSWSFTTFSDRYQS*SSAFYS Trigger: GCTGTAAAAAGCTGAAGAGCATGACTGATATCTATC...GCTAAAAGTAGTGAATGACCAAGAATAAGGAGAAAAGCCAACTCCTTCATCAGG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
||
| CDS-3UTR GCA 90 bp | TTTTTCATAGATGGCTTCTGTCATTCCCTCCCTTCAGACCTCGATGGAAAATTAGATAGATATCAGTCATaGTCTTCAGCTTTTTACAGC | + |
|
Preference number: 4 (lower is better) Translates to: FFIDGFCHSLPSDLDGKLDRYQS*SSAFYS Trigger: GCTGTAAAAAGCTGAAGAGCATGACTGATATCTATC...TAATTTTCCATCGAGGTCTGAAGGGAGGGAATGACAGAAGCCATCTATGAAAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000171719.8 |
||
| CDS-3UTR CCA 90 bp | TTAAAGGTCTCTATTGTTCAATATATCCATGAGCAGTGGTTTGAAACCTTCCTAATTCCCAAGGATTCCTaGAAGGTGGTCAAGAAGAGA | + |
|
Preference number: 4 (lower is better) Translates to: LKVSIVQYIHEQWFETFLIPKDS*KVVKKR Trigger: TCTCTTCTTGACCACCTTCCAGGAATCCTTGGGAAT...TAGGAAGGTTTCAAACCACTGCTCATGGATATATTGAACAATAGAGACCTTTAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
||
| 3UTR CAA 72 bp | GAAACAAAAGTATCTCAATACTGCATGTTCACTAAGTaGCATGGTTATCAAAGGAGGCAGCAAGTCTACAGT | + |
|
Preference number: 4 (lower is better) Translates to: ETKVSQYCMFTK*HGYQRRQQVYS Trigger: ACTGTAGACTTGCTGCCTCCTTTGATAACCATGCAACTTAGTGAACATGCAGTATTGAGATACTTTTGTTTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171719.8 |
||
| 3UTR CAA 72 bp | GATAAGAAACGCATTAGTGGACAGGGAAGAACATTTTaGGCTCAATTCAGGGAAGACATTTTTCTTATGAGA | + |
|
Preference number: 4 (lower is better) Translates to: DKKRISGQGRTF*AQFREDIFLMR Trigger: TCTCATAAGAAAAATGTCTTCCCTGAATTGAGCCAAAAATGTTCTTCCCTGTCCACTAATGCGTTTCTTATC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000165984.3 ENSMUST00000168841.3 |
||
| 3UTR CAA 72 bp | ATTAATCGTAGGAATCTTTCCCAAAATGTATTCCCTTaGGCCTCATCCATCATAGTTTTACAGTCTACAGTG | + |
|
Preference number: 4 (lower is better) Translates to: INRRNLSQNVFP*ASSIIVLQSTV Trigger: CACTGTAGACTGTAAAACTATGATGGATGAGGCCAAAGGGAATACATTTTGGGAAAGATTCCTACGATTAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171719.8 |
||
| 3UTR CAA 72 bp | ATTTGTCTGTATAGCATCACTACAAGATGGTACAATTaGGTTGATCTGCAGAAATCTGCTCAAAAGGATGGA | + |
|
Preference number: 4 (lower is better) Translates to: ICLYSITTRWYN*VDLQKSAQKDG Trigger: TCCATCCTTTTGAGCAGATTTCTGCAGATCAACCAAATTGTACCATCTTGTAGTGATGCTATACAGACAAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171719.8 |
||
| CDS-3UTR GCA 90 bp | TTCAGTCACGGCATAATTATAACGTTCTGGGCACCTGATTTAAAGGTCTCTATTAGACGTTTAGCAATGTaGTTTCTGAAAAATATGGAG | + |
|
Preference number: 4 (lower is better) Translates to: FSHGIIITFWAPDLKVSIRRLAM*FLKNME Trigger: CTCCATATTTTTCAGAAAGCACATTGCTAAACGTCT...AATAGAGACCTTTAAATCAGGTGCCCAGAACGTTATAATTATGCCGTGACTGAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
||
| CDS-3UTR GCA 90 bp | TTAAAGGTCTCTATTGTTCAATATATCCATGAGCAGTGGTTTGAAACCTTCCTAAGACGTTTAGCAATGTaGTTTCTGAAAAATATGGAG | + |
|
Preference number: 4 (lower is better) Translates to: LKVSIVQYIHEQWFETFLRRLAM*FLKNME Trigger: CTCCATATTTTTCAGAAAGCACATTGCTAAACGTCT...TAGGAAGGTTTCAAACCACTGCTCATGGATATATTGAACAATAGAGACCTTTAA 34% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
||
| CDS GCA 90 bp | CTCTTGCTCCCCAGTGGAAGGAGTGAATGTAGAGCTCACTCGATCTaGTGTCTCCCTATAGAAAACTGGGCACTGTTTGCAGAGACGTTT | + |
|
Preference number: 5 (lower is better) Translates to: LLLPSGRSECRAHSI*CLPIENWALFAETF Trigger: AAACGTCTCTGCAAACAGTGCCCAGTTTTCTATAGGGAGACAGCAGATCGAGTGAGCTCTACATTCACTCCTTCCACTGGGGAGCAAGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 ENSMUST00000171719.8 |
||
| CDS-3UTR CAA 90 bp | GTGATACTCTCATCCCCTACTTCTTTCAGAAATTTCTTCTCATCATGTGGTAGCCCCAACCGAGACCTCTaGCTCCCCAGTGGAAGGAGT | + |
|
Preference number: 5 (lower is better) Translates to: VILSSPTSFRNFFSSCGSPNRDL*LPSGRS Trigger: ACTCCTTCCACTGGGGAGCAAGAGGTCTCGGTTGGG...GCTACCACATGATGAGAAGAAATTTCTGAAAGAAGTAGGGGATGAGAGTATCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000165984.3 ENSMUST00000168841.3 |
||
| CDS-3UTR CAA 90 bp | TTCATGTTTGGCTATTCCATATACACCTTTCCCAGGAAGAGGTTGAGAGATAAACCCAACCGAGACCTCTaGCTCCCCAGTGGAAGGAGT | + |
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Preference number: 5 (lower is better) Translates to: FMFGYSIYTFPRKRLRDKPNRDL*LPSGRS Trigger: ACTCCTTCCACTGGGGAGCAAGAGGTCTCGGTTGGG...TTTATCTCTCAACCTCTTCCTGGGAAAGGTGTATATGGAATAGCCAAACATGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
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| CDS-3UTR CAA 90 bp | ATGAAGGAGTTGGCTTTTCTCCTTATTCTTGGTCATTCACTACTTTTAGCCTTCCCCAACCGAGACCTCTaGCTCCCCAGTGGAAGGAGT | + |
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Preference number: 5 (lower is better) Translates to: MKELAFLLILGHSLLLAFPNRDL*LPSGRS Trigger: ACTCCTTCCACTGGGGAGCAAGAGGTCTCGGTTGGG...GAAGGCTAAAAGTAGTGAATGACCAAGAATAAGGAGAAAAGCCAACTCCTTCAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
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| CDS-3UTR CAA 90 bp | AAATTAGAAATAGAGGCTGACAATAGGGAGGTGTTGCACTTCTTATATCACAGTCCCAACCGAGACCTCTaGCTCCCCAGTGGAAGGAGT | + |
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Preference number: 5 (lower is better) Translates to: KLEIEADNREVLHFLYHSPNRDL*LPSGRS Trigger: ACTCCTTCCACTGGGGAGCAAGAGGTCTCGGTTGGG...ACTGTGATATAAGAAGTGCAACACCTCCCTATTGTCAGCCTCTATTTCTAATTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171719.8 |
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| CDS-3UTR CAA 90 bp | CTGACCCAGTGGCTTATCATAGTGGACATGGATTTCTTACTCCTCTTCTCCATGGATCCAAGCTCCAATTaGCTTCACACTGGTTTTATG | + |
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Preference number: 5 (lower is better) Translates to: LTQWLIIVDMDFLLLFSMDPSSN*LHTGFM Trigger: CATAAAACCAGTGTGAAGCAAATTGGAGCTTGGATC...CATGGAGAAGAGGAGTAAGAAATCCATGTCCACTATGATAAGCCACTGGGTCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168841.3 |
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| CDS CCA 90 bp | AGTGAATGTAGAGCTCACTCGATCTGCTGTCTCCCTATAGAAAACTaGGCACTGTTTGCAGAGACGTTTAGCAATGTGCTTTCTGAAAAA | + |
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Preference number: 5 (lower is better) Translates to: SECRAHSICCLPIEN*ALFAETFSNVLSEK Trigger: TTTTTCAGAAAGCACATTGCTAAACGTCTCTGCAAACAGTGCCCAGTTTTCTATAGGGAGACAGCAGATCGAGTGAGCTCTACATTCACT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 ENSMUST00000171719.8 |
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| CDS-3UTR CAA 90 bp | AATTTGAGAGCCCTGCTCACTTTCATTTCCATTTTCACTCAGGAGCAACAGTGCGATCCAAGCTCCAATTaGCTTCACACTGGTTTTATG | + |
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Preference number: 5 (lower is better) Translates to: NLRALLTFISIFTQEQQCDPSSN*LHTGFM Trigger: CATAAAACCAGTGTGAAGCAAATTGGAGCTTGGATC...GCACTGTTGCTCCTGAGTGAAAATGGAAATGAAAGTGAGCAGGGCTCTCAAATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
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| CDS-3UTR CAA 90 bp | GATGGCTTCTGTCATTCCCTCCCTTCAGACCTCGATGGAAAATTAGAAATAGAGGATCCAAGCTCCAATTaGCTTCACACTGGTTTTATG | + |
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Preference number: 5 (lower is better) Translates to: DGFCHSLPSDLDGKLEIEDPSSN*LHTGFM Trigger: CATAAAACCAGTGTGAAGCAAATTGGAGCTTGGATC...CTCTATTTCTAATTTTCCATCGAGGTCTGAAGGGAGGGAATGACAGAAGCCATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171719.8 |
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| CDS-3UTR CAA 90 bp | ATAAGAAACGCATTAGTGGACAGGGAAGAACATTTTTGGCTCAATTCAGGGAAGGATCCAAGCTCCAATTaGCTTCACACTGGTTTTATG | + |
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Preference number: 5 (lower is better) Translates to: IRNALVDREEHFWLNSGKDPSSN*LHTGFM Trigger: CATAAAACCAGTGTGAAGCAAATTGGAGCTTGGATC...CTTCCCTGAATTGAGCCAAAAATGTTCTTCCCTGTCCACTAATGCGTTTCTTAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000165984.3 ENSMUST00000168841.3 |
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| CDS-3UTR CAA 90 bp | GGAGAAGGAACCAAAGAGCAAGACATTTCTTCCCAAATGAGAAAGAAATTTGAGAAGAAGAGAACAATATaGTATGGAGTCCAGAAGAGA | + |
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Preference number: 5 (lower is better) Translates to: GEGTKEQDISSQMRKKFEKKRTI*YGVQKR Trigger: TCTCTTCTGGACTCCATACAATATTGTTCTCTTCTT...CTCAAATTTCTTTCTCATTTGGGAAGAAATGTCTTGCTCTTTGGTTCCTTCTCC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 |
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| CDS GCA 72 bp | CCCAGTGGAAGGAGTGAATGTAGAGCTCACTCGATCTaGTGTCTCCCTATAGAAAACTGGGCACTGTTTGCA | + |
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Preference number: 6 (lower is better) Translates to: PSGRSECRAHSI*CLPIENWALFA Trigger: TGCAAACAGTGCCCAGTTTTCTATAGGGAGACAGCAGATCGAGTGAGCTCTACATTCACTCCTTCCACTGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 ENSMUST00000171719.8 |
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| CDS CAA 72 bp | CAGGGAGTAGAGTGGAGGCAGGATCCAAGCTCCAATTaGCTTCACACTGGTTTTATGACAAGGCTCACCATC | + |
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Preference number: 6 (lower is better) Translates to: QGVEWRQDPSSN*LHTGFMTRLTI Trigger: GATGGTGAGCCTTGTCATAAAACCAGTGTGAAGCAAATTGGAGCTTGGATCCTGCCTCCACTCTACTCCCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 ENSMUST00000171719.8 |
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| CDS CAA 90 bp | GATGAATACCAGGGAGTAGAGTGGAGGCAGGATCCAAGCTCCAATTaGCTTCACACTGGTTTTATGACAAGGCTCACCATCATCGTAGTC | + |
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Preference number: 6 (lower is better) Translates to: DEYQGVEWRQDPSSN*LHTGFMTRLTIIVV Trigger: GACTACGATGATGGTGAGCCTTGTCATAAAACCAGTGTGAAGCAAATTGGAGCTTGGATCCTGCCTCCACTCTACTCCCTGGTATTCATC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000055918.7 ENSMUST00000165984.3 ENSMUST00000168841.3 ENSMUST00000171719.8 |
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