Pregenerated sensors for CCR1L1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000064039Ensembl transcript IDs: ENSMUST00000071404.5
Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR CCA 72 bp | TTCTTCTGTTTTACAATGAATCCTCCATATCTGTCTTaGAGAGGCACACTGTCTTTTCACTCTTCTAGGCCT | + |
Preference number: 3 (lower is better) Translates to: FFCFTMNPPYLS*RGTLSFHSSRP Trigger: AGGCCTAGAAGAGTGAAAAGACAGTGTGCCTCTCCAAGACAGATATGGAGGATTCATTGTAAAACAGAAGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071404.5 |
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CDS-3UTR GCA 90 bp | TATCTGTCTTGGAGAGGCACACTGTCTTTTCACTCTTCTAGGCCTTTGTTGGCGGGCACTGGCCCTCTGTaGTCTGTCCACCGAGAGGAA | + |
Preference number: 4 (lower is better) Translates to: YLSWRGTLSFHSSRPLLAGTGPL*SVHREE Trigger: TTCCTCTCGGTGGACAGAGCACAGAGGGCCAGTGCC...CGCCAACAAAGGCCTAGAAGAGTGAAAAGACAGTGTGCCTCTCCAAGACAGATA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071404.5 |
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CDS-3UTR CCA 90 bp | CATATCTGTCTTGGAGAGGCACACTGTCTTTTCACTCTTCTAGGCCTTTGTTGGCTGTGGATGGAGGCGTaGCACTGGCCCTCTGTGCTC | + |
Preference number: 4 (lower is better) Translates to: HICLGEAHCLFTLLGLCWLWMEA*HWPSVL Trigger: GAGCACAGAGGGCCAGTGCCACGCCTCCATCCACAG...CCAACAAAGGCCTAGAAGAGTGAAAAGACAGTGTGCCTCTCCAAGACAGATATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071404.5 |
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CDS-3UTR CCA 90 bp | AATCCTCCATATCTGTCTTGGAGAGGCACACTGTCTTTTCACTCTTCTAGGCCTAATTTCCACTGTGGATaGAGGCGTGGCACTGGCCCT | + |
Preference number: 4 (lower is better) Translates to: NPPYLSWRGTLSFHSSRPNFHCG*RRGTGP Trigger: AGGGCCAGTGCCACGCCTCCATCCACAGTGGAAATT...AGGCCTAGAAGAGTGAAAAGACAGTGTGCCTCTCCAAGACAGATATGGAGGATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071404.5 |
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CDS-3UTR CCA 90 bp | CCTCCATATCTGTCTTGGAGAGGCACACTGTCTTTTCACTCTTCTAGGCCTTTGGTATCAGGCTCTTCCTaGGCAAAATTGCTCTGCAGG | + |
Preference number: 4 (lower is better) Translates to: PPYLSWRGTLSFHSSRPLVSGSS*AKLLCR Trigger: CCTGCAGAGCAATTTTGCCCAGGAAGAGCCTGATAC...CAAAGGCCTAGAAGAGTGAAAAGACAGTGTGCCTCTCCAAGACAGATATGGAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071404.5 |
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CDS-3UTR TCA 90 bp | GAGGCACACTGTCTTTTCACTCTTCTAGGCCTTTGTTGGCGTCCAGGGTCTGAACCCTCACATTTATGCTaGAGCATAAGAATCCAGACA | + |
Preference number: 4 (lower is better) Translates to: EAHCLFTLLGLCWRPGSEPSHLC*SIRIQT Trigger: TGTCTGGATTCTTATGCTTCAGCATAAATGTGAGGG...TTCAGACCCTGGACGCCAACAAAGGCCTAGAAGAGTGAAAAGACAGTGTGCCTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071404.5 |
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CDS-3UTR GCA 90 bp | ATCTGTCTTGGAGAGGCACACTGTCTTTTCACTCTTCTAGGCCTTTGTTGGCGTAGGGTTATAGCTGTATaGCTCCGAAACAACTGCCAG | + |
Preference number: 4 (lower is better) Translates to: ICLGEAHCLFTLLGLCWRRVIAV*LRNNCQ Trigger: CTGGCAGTTGTTTCGGAGGCATACAGCTATAACCCT...ACGCCAACAAAGGCCTAGAAGAGTGAAAAGACAGTGTGCCTCTCCAAGACAGAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071404.5 |
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CDS-3UTR CCA 90 bp | CATATCTGTCTTGGAGAGGCACACTGTCTTTTCACTCTTCTAGGCCTTTGTTGGGACAGGTCCACCTGTTaGCTTCTCAAACAACTAGGG | + |
Preference number: 4 (lower is better) Translates to: HICLGEAHCLFTLLGLCWDRSTC*LLKQLG Trigger: CCCTAGTTGTTTGAGAAGCCAACAGGTGGACCTGTC...CCAACAAAGGCCTAGAAGAGTGAAAAGACAGTGTGCCTCTCCAAGACAGATATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071404.5 |
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CDS-3UTR TCA 90 bp | ATGAATCCTCCATATCTGTCTTGGAGAGGCACACTGTCTTTTCACTCTTCTAGGGCCTCTTGTGTTGTATaGGCACCAGAACCACCAAGA | + |
Preference number: 4 (lower is better) Translates to: MNPPYLSWRGTLSFHSSRASCVV*APEPPR Trigger: TCTTGGTGGTTCTGGTGCTCATACAACACAAGAGGC...CCTAGAAGAGTGAAAAGACAGTGTGCCTCTCCAAGACAGATATGGAGGATTCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071404.5 |
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CDS-3UTR GCA 90 bp | TCTTGGAGAGGCACACTGTCTTTTCACTCTTCTAGGCCTTTGTTGGCGTCCAGGCACTGTGATTCCAAATaGCCTCACATTTATGCTGAA | + |
Preference number: 4 (lower is better) Translates to: SWRGTLSFHSSRPLLASRHCDSK*PHIYAE Trigger: TTCAGCATAAATGTGAGGGCATTTGGAATCACAGTG...CCTGGACGCCAACAAAGGCCTAGAAGAGTGAAAAGACAGTGTGCCTCTCCAAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071404.5 |
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CDS-3UTR CCA 90 bp | CATATCTGTCTTGGAGAGGCACACTGTCTTTTCACTCTTCTAGGCCTTTGTTGGAGAACCACCAAGACATaGCCTATCACGCCAATGATG | + |
Preference number: 4 (lower is better) Translates to: HICLGEAHCLFTLLGLCWRTTKT*PITPMM Trigger: CATCATTGGCGTGATAGGCCATGTCTTGGTGGTTCT...CCAACAAAGGCCTAGAAGAGTGAAAAGACAGTGTGCCTCTCCAAGACAGATATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071404.5 |
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CDS-3UTR GCA 90 bp | CATATCTGTCTTGGAGAGGCACACTGTCTTTTCACTCTTCTAGGCCTTTGTTGGGTGGGTGTAGGCAAGTaGTTCAGTTATCATCAAGGA | + |
Preference number: 4 (lower is better) Translates to: HICLGEAHCLFTLLGLCWVGVGK*FSYHQG Trigger: TCCTTGATGATAACTGAAGCACTTGCCTACACCCAC...CCAACAAAGGCCTAGAAGAGTGAAAAGACAGTGTGCCTCTCCAAGACAGATATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071404.5 |
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CDS-3UTR CCA 90 bp | AATCCTCCATATCTGTCTTGGAGAGGCACACTGTCTTTTCACTCTTCTAGGCCTACACAAACTTACACATaGCGTTACCAAAAATCCAGT | + |
Preference number: 4 (lower is better) Translates to: NPPYLSWRGTLSFHSSRPTQTYT*RYQKSS Trigger: ACTGGATTTTTGGTAACGCCATGTGTAAGTTTGTGT...AGGCCTAGAAGAGTGAAAAGACAGTGTGCCTCTCCAAGACAGATATGGAGGATT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000071404.5 |
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CDS-3UTR TCA 90 bp | TTCTTCTGTTTTACAATGAATCCTCCATATCTGTCTTGGAGAGGCACACTGTCTTCCAGTCTCCTTTCATaGTATAGTCAACCCAGAAAG | + |
Preference number: 4 (lower is better) Translates to: FFCFTMNPPYLSWRGTLSSSLLS*YSQPRK Trigger: CTTTCTGGGTTGACTATATCATGAAAGGAGACTGGA...AGACAGTGTGCCTCTCCAAGACAGATATGGAGGATTCATTGTAAAACAGAAGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071404.5 |
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CDS-3UTR CCA 90 bp | TTCTTCTGTTTTACAATGAATCCTCCATATCTGTCTTGGAGAGGCACACTGTCTAAAGACATAAATGACTaGGTTGACACAGCAGTGGGT | + |
Preference number: 4 (lower is better) Translates to: FFCFTMNPPYLSWRGTLSKDIND*VDTAVG Trigger: ACCCACTGCTGTGTCAACCCAGTCATTTATGTCTTT...AGACAGTGTGCCTCTCCAAGACAGATATGGAGGATTCATTGTAAAACAGAAGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071404.5 |
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CDS-3UTR TCA 90 bp | TTTCTTCTGTTTTACAATGAATCCTCCATATCTGTCTTGGAGAGGCACACTGTCATAAGAATCCAGACATaGAGTCATTCTTGGCAACTG | + |
Preference number: 4 (lower is better) Translates to: FLLFYNESSISVLERHTVIRIQT*SHSWQL Trigger: CAGTTGCCAAGAATGACTTCATGTCTGGATTCTTAT...GACAGTGTGCCTCTCCAAGACAGATATGGAGGATTCATTGTAAAACAGAAGAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071404.5 |
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CDS-3UTR TCA 90 bp | CTTCTGTTTTACAATGAATCCTCCATATCTGTCTTGGAGAGGCACACTGTCTTTACTCCATCTGGGATTTaGAAACATAGAGACAAGGAA | + |
Preference number: 4 (lower is better) Translates to: LLFYNESSISVLERHTVFTPSGI*KHRDKE Trigger: TTCCTTGTCTCTATGTTTTCAAATCCCAGATGGAGT...AAAGACAGTGTGCCTCTCCAAGACAGATATGGAGGATTCATTGTAAAACAGAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071404.5 |
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CDS CCA 90 bp | AGTCGGCAGAGGTCTCAATTTCCACTGTGGATGGAGGCGTGGCACTaGCCCTCTGTGCTCTGTCCACCGAGAGGAAGGGCAGCCATTGTG | + |
Preference number: 5 (lower is better) Translates to: SRQRSQFPLWMEAWH*PSVLCPPRGRAAIV Trigger: CACAATGGCTGCCCTTCCTCTCGGTGGACAGAGCACAGAGGGCCAGTGCCACGCCTCCATCCACAGTGGAAATTGAGACCTCTGCCGACT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071404.5 |
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CDS GCA 90 bp | GGTCTCAATTTCCACTGTGGATGGAGGCGTGGCACTGGCCCTCTGTaGTCTGTCCACCGAGAGGAAGGGCAGCCATTGTGGCAGGGTTAT | + |
Preference number: 5 (lower is better) Translates to: GLNFHCGWRRGTGPL*SVHREEGQPLWQGY Trigger: ATAACCCTGCCACAATGGCTGCCCTTCCTCTCGGTGGACAGAGCACAGAGGGCCAGTGCCACGCCTCCATCCACAGTGGAAATTGAGACC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071404.5 |
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CDS CCA 90 bp | ACTGGCCCTCTGTGCTCTGTCCACCGAGAGGAAGGGCAGCCATTGTaGCAGGGTTATAGCTGTATGCCTCCGAAACAACTGCCAGAGGTA | + |
Preference number: 5 (lower is better) Translates to: TGPLCSVHREEGQPL*QGYSCMPPKQLPEV Trigger: TACCTCTGGCAGTTGTTTCGGAGGCATACAGCTATAACCCTGCCACAATGGCTGCCCTTCCTCTCGGTGGACAGAGCACAGAGGGCCAGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071404.5 |
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CDS GCA 90 bp | TCCACCGAGAGGAAGGGCAGCCATTGTGGCAGGGTTATAGCTGTATaGCTCCGAAACAACTGCCAGAGGTACTTCCGGAACCGTTTACCC | + |
Preference number: 5 (lower is better) Translates to: STERKGSHCGRVIAV*LRNNCQRYFRNRLP Trigger: GGGTAAACGGTTCCGGAAGTACCTCTGGCAGTTGTTTCGGAGGCATACAGCTATAACCCTGCCACAATGGCTGCCCTTCCTCTCGGTGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071404.5 |
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CDS-3UTR CAA 90 bp | GGAGAGGCACACTGTCTTTTCACTCTTCTAGGCCTTTGTTGGCGTCCAGGGTCTTCGAAGCCTCTTGTGTaGTATGAGCACCAGAACCAC | + |
Preference number: 5 (lower is better) Translates to: GEAHCLFTLLGLCWRPGSSKPLV*YEHQNH Trigger: GTGGTTCTGGTGCTCATACAACACAAGAGGCTTCGA...AGACCCTGGACGCCAACAAAGGCCTAGAAGAGTGAAAAGACAGTGTGCCTCTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071404.5 |
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CDS-3UTR CAA 90 bp | TGTCTTGGAGAGGCACACTGTCTTTTCACTCTTCTAGGCCTTTGTTGGCGTCCATCTTCCTGGGCAAAATaGCTCTGCAGGTATGGTAAG | + |
Preference number: 5 (lower is better) Translates to: CLGEAHCLFTLLGLCWRPSSWAK*LCRYGK Trigger: CTTACCATACCTGCAGAGCAATTTTGCCCAGGAAGA...TGGACGCCAACAAAGGCCTAGAAGAGTGAAAAGACAGTGTGCCTCTCCAAGACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071404.5 |
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CDS-3UTR CAA 90 bp | CTTGGAGAGGCACACTGTCTTTTCACTCTTCTAGGCCTTTGTTGGCGTCCAGGGTTGGCCTTCTTCTTATaGGGTCTTCTGTGTAAAACA | + |
Preference number: 5 (lower is better) Translates to: LGEAHCLFTLLGLCWRPGLAFFL*GLLCKT Trigger: TGTTTTACACAGAAGACCCAATAAGAAGAAGGCCAA...CCCTGGACGCCAACAAAGGCCTAGAAGAGTGAAAAGACAGTGTGCCTCTCCAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071404.5 |
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CDS GCA 90 bp | AAAGACATAAATGACTGGGTTGACACAGCAGTGGGTGTAGGCAAGTaGTTCAGTTATCATCAAGGACAGGTCCACCTGTTGGCTTCTCAA | + |
Preference number: 5 (lower is better) Translates to: KDINDWVDTAVGVGK*FSYHQGQVHLLASQ Trigger: TTGAGAAGCCAACAGGTGGACCTGTCCTTGATGATAACTGAAGCACTTGCCTACACCCACTGCTGTGTCAACCCAGTCATTTATGTCTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071404.5 |
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CDS-3UTR CAA 90 bp | TTTTACAATGAATCCTCCATATCTGTCTTGGAGAGGCACACTGTCTTTTCACTCGGACAGGTCCACCTGTaGGCTTCTCAAACAACTAGG | + |
Preference number: 5 (lower is better) Translates to: FYNESSISVLERHTVFSLGQVHL*ASQTTR Trigger: CCTAGTTGTTTGAGAAGCCAACAGGTGGACCTGTCC...GAGTGAAAAGACAGTGTGCCTCTCCAAGACAGATATGGAGGATTCATTGTAAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071404.5 |
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CDS TCA 90 bp | ACACAAACTTACACATGGCGTTACCAAAAATCCAGTCTCCTTTCATaGTATAGTCAACCCAGAAAGGTAATGTGGAGAGGAAGACCAGAT | + |
Preference number: 5 (lower is better) Translates to: TQTYTWRYQKSSLLS*YSQPRKVMWRGRPD Trigger: ATCTGGTCTTCCTCTCCACATTACCTTTCTGGGTTGACTATATCATGAAAGGAGACTGGATTTTTGGTAACGCCATGTGTAAGTTTGTGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000071404.5 |
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CDS CCA 72 bp | CGGCAGAGGTCTCAATTTCCACTGTGGATGGAGGCGTaGCACTGGCCCTCTGTGCTCTGTCCACCGAGAGGA | + |
Preference number: 6 (lower is better) Translates to: RQRSQFPLWMEA*HWPSVLCPPRG Trigger: TCCTCTCGGTGGACAGAGCACAGAGGGCCAGTGCCACGCCTCCATCCACAGTGGAAATTGAGACCTCTGCCG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071404.5 |
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CDS CCA 72 bp | AGGTCTCAATTTCCACTGTGGATGGAGGCGTGGCACTaGCCCTCTGTGCTCTGTCCACCGAGAGGAAGGGCA | + |
Preference number: 6 (lower is better) Translates to: RSQFPLWMEAWH*PSVLCPPRGRA Trigger: TGCCCTTCCTCTCGGTGGACAGAGCACAGAGGGCCAGTGCCACGCCTCCATCCACAGTGGAAATTGAGACCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071404.5 |
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CDS CAA 90 bp | GGCACTGGCCCTCTGTGCTCTGTCCACCGAGAGGAAGGGCAGCCATaGTGGCAGGGTTATAGCTGTATGCCTCCGAAACAACTGCCAGAG | + |
Preference number: 6 (lower is better) Translates to: GTGPLCSVHREEGQP*WQGYSCMPPKQLPE Trigger: CTCTGGCAGTTGTTTCGGAGGCATACAGCTATAACCCTGCCACAATGGCTGCCCTTCCTCTCGGTGGACAGAGCACAGAGGGCCAGTGCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071404.5 |
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CDS CAA 72 bp | CCTCTGTGCTCTGTCCACCGAGAGGAAGGGCAGCCATaGTGGCAGGGTTATAGCTGTATGCCTCCGAAACAA | + |
Preference number: 6 (lower is better) Translates to: PLCSVHREEGQP*WQGYSCMPPKQ Trigger: TTGTTTCGGAGGCATACAGCTATAACCCTGCCACAATGGCTGCCCTTCCTCTCGGTGGACAGAGCACAGAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071404.5 |
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CDS GCA 72 bp | TGTGGCAGGGTTATAGCTGTATGCCTCCGAAACAACTaGCAGAGGTACTTCCGGAACCGTTTACCCACAAAG | + |
Preference number: 6 (lower is better) Translates to: CGRVIAVCLRNN*QRYFRNRLPTK Trigger: CTTTGTGGGTAAACGGTTCCGGAAGTACCTCTGGCAGTTGTTTCGGAGGCATACAGCTATAACCCTGCCACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071404.5 |
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CDS TCA 72 bp | AGATGCTGGTCATGTTTCGAAGCCTCTTGTGTTGTATaGGCACCAGAACCACCAAGACATGGCCTATCACGC | + |
Preference number: 6 (lower is better) Translates to: RCWSCFEASCVV*APEPPRHGLSR Trigger: GCGTGATAGGCCATGTCTTGGTGGTTCTGGTGCTCATACAACACAAGAGGCTTCGAAACATGACCAGCATCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071404.5 |
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CDS GCA 72 bp | AATGACTGGGTTGACACAGCAGTGGGTGTAGGCAAGTaGTTCAGTTATCATCAAGGACAGGTCCACCTGTTG | + |
Preference number: 6 (lower is better) Translates to: NDWVDTAVGVGK*FSYHQGQVHLL Trigger: CAACAGGTGGACCTGTCCTTGATGATAACTGAAGCACTTGCCTACACCCACTGCTGTGTCAACCCAGTCATT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071404.5 |
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CDS CAA 90 bp | CAGGTTGAACAGGTAGATGCTGGTCATGTTTCGAAGCCTCTTGTGTaGTATGAGCACCAGAACCACCAAGACATGGCCTATCACGCCAAT | + |
Preference number: 6 (lower is better) Translates to: QVEQVDAGHVSKPLV*YEHQNHQDMAYHAN Trigger: ATTGGCGTGATAGGCCATGTCTTGGTGGTTCTGGTGCTCATACAACACAAGAGGCTTCGAAACATGACCAGCATCTACCTGTTCAACCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071404.5 |
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CDS CAA 72 bp | CAGGTAGATGCTGGTCATGTTTCGAAGCCTCTTGTGTaGTATGAGCACCAGAACCACCAAGACATGGCCTAT | + |
Preference number: 6 (lower is better) Translates to: QVDAGHVSKPLV*YEHQNHQDMAY Trigger: ATAGGCCATGTCTTGGTGGTTCTGGTGCTCATACAACACAAGAGGCTTCGAAACATGACCAGCATCTACCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071404.5 |
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CDS CCA 72 bp | AGTGCTTCAGTTATCATCAAGGACAGGTCCACCTGTTaGCTTCTCAAACAACTAGGGGTGAATAGGACGTCT | + |
Preference number: 6 (lower is better) Translates to: SASVIIKDRSTC*LLKQLGVNRTS Trigger: AGACGTCCTATTCACCCCTAGTTGTTTGAGAAGCCAACAGGTGGACCTGTCCTTGATGATAACTGAAGCACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071404.5 |
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CDS TCA 72 bp | TACACATGGCGTTACCAAAAATCCAGTCTCCTTTCATaGTATAGTCAACCCAGAAAGGTAATGTGGAGAGGA | + |
Preference number: 6 (lower is better) Translates to: YTWRYQKSSLLS*YSQPRKVMWRG Trigger: TCCTCTCCACATTACCTTTCTGGGTTGACTATATCATGAAAGGAGACTGGATTTTTGGTAACGCCATGTGTA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000071404.5 |
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CDS CAA 72 bp | AAGAGAAGCGTAATAACAAAAATCAGGCGCATGACTTaGGCCTTCTTCTTATTGGGTCTTCTGTGTAAAACA | + |
Preference number: 6 (lower is better) Translates to: KRSVITKIRRMT*AFFLLGLLCKT Trigger: TGTTTTACACAGAAGACCCAATAAGAAGAAGGCCAAAGTCATGCGCCTGATTTTTGTTATTACGCTTCTCTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000071404.5 |