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Pregenerated sensors for CCR1L1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000064039

Ensembl transcript IDs: ENSMUST00000071404.5

Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 72 bp TTCTTCTGTTTTACAATGAATCCTCCATATCTGTCTTaGAGAGGCACACTGTCTTTTCACTCTTCTAGGCCT +
Preference number: 3 (lower is better)
Translates to: FFCFTMNPPYLS*RGTLSFHSSRP
Trigger: AGGCCTAGAAGAGTGAAAAGACAGTGTGCCTCTCCAAGACAGATATGGAGGATTCATTGTAAAACAGAAGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071404.5
CDS-3UTR GCA 90 bp TATCTGTCTTGGAGAGGCACACTGTCTTTTCACTCTTCTAGGCCTTTGTTGGCGGGCACTGGCCCTCTGTaGTCTGTCCACCGAGAGGAA +
Preference number: 4 (lower is better)
Translates to: YLSWRGTLSFHSSRPLLAGTGPL*SVHREE
Trigger: TTCCTCTCGGTGGACAGAGCACAGAGGGCCAGTGCC...CGCCAACAAAGGCCTAGAAGAGTGAAAAGACAGTGTGCCTCTCCAAGACAGATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071404.5
CDS-3UTR CCA 90 bp CATATCTGTCTTGGAGAGGCACACTGTCTTTTCACTCTTCTAGGCCTTTGTTGGCTGTGGATGGAGGCGTaGCACTGGCCCTCTGTGCTC +
Preference number: 4 (lower is better)
Translates to: HICLGEAHCLFTLLGLCWLWMEA*HWPSVL
Trigger: GAGCACAGAGGGCCAGTGCCACGCCTCCATCCACAG...CCAACAAAGGCCTAGAAGAGTGAAAAGACAGTGTGCCTCTCCAAGACAGATATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071404.5
CDS-3UTR CCA 90 bp AATCCTCCATATCTGTCTTGGAGAGGCACACTGTCTTTTCACTCTTCTAGGCCTAATTTCCACTGTGGATaGAGGCGTGGCACTGGCCCT +
Preference number: 4 (lower is better)
Translates to: NPPYLSWRGTLSFHSSRPNFHCG*RRGTGP
Trigger: AGGGCCAGTGCCACGCCTCCATCCACAGTGGAAATT...AGGCCTAGAAGAGTGAAAAGACAGTGTGCCTCTCCAAGACAGATATGGAGGATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071404.5
CDS-3UTR CCA 90 bp CCTCCATATCTGTCTTGGAGAGGCACACTGTCTTTTCACTCTTCTAGGCCTTTGGTATCAGGCTCTTCCTaGGCAAAATTGCTCTGCAGG +
Preference number: 4 (lower is better)
Translates to: PPYLSWRGTLSFHSSRPLVSGSS*AKLLCR
Trigger: CCTGCAGAGCAATTTTGCCCAGGAAGAGCCTGATAC...CAAAGGCCTAGAAGAGTGAAAAGACAGTGTGCCTCTCCAAGACAGATATGGAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071404.5
CDS-3UTR TCA 90 bp GAGGCACACTGTCTTTTCACTCTTCTAGGCCTTTGTTGGCGTCCAGGGTCTGAACCCTCACATTTATGCTaGAGCATAAGAATCCAGACA +
Preference number: 4 (lower is better)
Translates to: EAHCLFTLLGLCWRPGSEPSHLC*SIRIQT
Trigger: TGTCTGGATTCTTATGCTTCAGCATAAATGTGAGGG...TTCAGACCCTGGACGCCAACAAAGGCCTAGAAGAGTGAAAAGACAGTGTGCCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071404.5
CDS-3UTR GCA 90 bp ATCTGTCTTGGAGAGGCACACTGTCTTTTCACTCTTCTAGGCCTTTGTTGGCGTAGGGTTATAGCTGTATaGCTCCGAAACAACTGCCAG +
Preference number: 4 (lower is better)
Translates to: ICLGEAHCLFTLLGLCWRRVIAV*LRNNCQ
Trigger: CTGGCAGTTGTTTCGGAGGCATACAGCTATAACCCT...ACGCCAACAAAGGCCTAGAAGAGTGAAAAGACAGTGTGCCTCTCCAAGACAGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071404.5
CDS-3UTR CCA 90 bp CATATCTGTCTTGGAGAGGCACACTGTCTTTTCACTCTTCTAGGCCTTTGTTGGGACAGGTCCACCTGTTaGCTTCTCAAACAACTAGGG +
Preference number: 4 (lower is better)
Translates to: HICLGEAHCLFTLLGLCWDRSTC*LLKQLG
Trigger: CCCTAGTTGTTTGAGAAGCCAACAGGTGGACCTGTC...CCAACAAAGGCCTAGAAGAGTGAAAAGACAGTGTGCCTCTCCAAGACAGATATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071404.5
CDS-3UTR TCA 90 bp ATGAATCCTCCATATCTGTCTTGGAGAGGCACACTGTCTTTTCACTCTTCTAGGGCCTCTTGTGTTGTATaGGCACCAGAACCACCAAGA +
Preference number: 4 (lower is better)
Translates to: MNPPYLSWRGTLSFHSSRASCVV*APEPPR
Trigger: TCTTGGTGGTTCTGGTGCTCATACAACACAAGAGGC...CCTAGAAGAGTGAAAAGACAGTGTGCCTCTCCAAGACAGATATGGAGGATTCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071404.5
CDS-3UTR GCA 90 bp TCTTGGAGAGGCACACTGTCTTTTCACTCTTCTAGGCCTTTGTTGGCGTCCAGGCACTGTGATTCCAAATaGCCTCACATTTATGCTGAA +
Preference number: 4 (lower is better)
Translates to: SWRGTLSFHSSRPLLASRHCDSK*PHIYAE
Trigger: TTCAGCATAAATGTGAGGGCATTTGGAATCACAGTG...CCTGGACGCCAACAAAGGCCTAGAAGAGTGAAAAGACAGTGTGCCTCTCCAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071404.5
CDS-3UTR CCA 90 bp CATATCTGTCTTGGAGAGGCACACTGTCTTTTCACTCTTCTAGGCCTTTGTTGGAGAACCACCAAGACATaGCCTATCACGCCAATGATG +
Preference number: 4 (lower is better)
Translates to: HICLGEAHCLFTLLGLCWRTTKT*PITPMM
Trigger: CATCATTGGCGTGATAGGCCATGTCTTGGTGGTTCT...CCAACAAAGGCCTAGAAGAGTGAAAAGACAGTGTGCCTCTCCAAGACAGATATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071404.5
CDS-3UTR GCA 90 bp CATATCTGTCTTGGAGAGGCACACTGTCTTTTCACTCTTCTAGGCCTTTGTTGGGTGGGTGTAGGCAAGTaGTTCAGTTATCATCAAGGA +
Preference number: 4 (lower is better)
Translates to: HICLGEAHCLFTLLGLCWVGVGK*FSYHQG
Trigger: TCCTTGATGATAACTGAAGCACTTGCCTACACCCAC...CCAACAAAGGCCTAGAAGAGTGAAAAGACAGTGTGCCTCTCCAAGACAGATATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071404.5
CDS-3UTR CCA 90 bp AATCCTCCATATCTGTCTTGGAGAGGCACACTGTCTTTTCACTCTTCTAGGCCTACACAAACTTACACATaGCGTTACCAAAAATCCAGT +
Preference number: 4 (lower is better)
Translates to: NPPYLSWRGTLSFHSSRPTQTYT*RYQKSS
Trigger: ACTGGATTTTTGGTAACGCCATGTGTAAGTTTGTGT...AGGCCTAGAAGAGTGAAAAGACAGTGTGCCTCTCCAAGACAGATATGGAGGATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071404.5
CDS-3UTR TCA 90 bp TTCTTCTGTTTTACAATGAATCCTCCATATCTGTCTTGGAGAGGCACACTGTCTTCCAGTCTCCTTTCATaGTATAGTCAACCCAGAAAG +
Preference number: 4 (lower is better)
Translates to: FFCFTMNPPYLSWRGTLSSSLLS*YSQPRK
Trigger: CTTTCTGGGTTGACTATATCATGAAAGGAGACTGGA...AGACAGTGTGCCTCTCCAAGACAGATATGGAGGATTCATTGTAAAACAGAAGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071404.5
CDS-3UTR CCA 90 bp TTCTTCTGTTTTACAATGAATCCTCCATATCTGTCTTGGAGAGGCACACTGTCTAAAGACATAAATGACTaGGTTGACACAGCAGTGGGT +
Preference number: 4 (lower is better)
Translates to: FFCFTMNPPYLSWRGTLSKDIND*VDTAVG
Trigger: ACCCACTGCTGTGTCAACCCAGTCATTTATGTCTTT...AGACAGTGTGCCTCTCCAAGACAGATATGGAGGATTCATTGTAAAACAGAAGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071404.5
CDS-3UTR TCA 90 bp TTTCTTCTGTTTTACAATGAATCCTCCATATCTGTCTTGGAGAGGCACACTGTCATAAGAATCCAGACATaGAGTCATTCTTGGCAACTG +
Preference number: 4 (lower is better)
Translates to: FLLFYNESSISVLERHTVIRIQT*SHSWQL
Trigger: CAGTTGCCAAGAATGACTTCATGTCTGGATTCTTAT...GACAGTGTGCCTCTCCAAGACAGATATGGAGGATTCATTGTAAAACAGAAGAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071404.5
CDS-3UTR TCA 90 bp CTTCTGTTTTACAATGAATCCTCCATATCTGTCTTGGAGAGGCACACTGTCTTTACTCCATCTGGGATTTaGAAACATAGAGACAAGGAA +
Preference number: 4 (lower is better)
Translates to: LLFYNESSISVLERHTVFTPSGI*KHRDKE
Trigger: TTCCTTGTCTCTATGTTTTCAAATCCCAGATGGAGT...AAAGACAGTGTGCCTCTCCAAGACAGATATGGAGGATTCATTGTAAAACAGAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071404.5
CDS CCA 90 bp AGTCGGCAGAGGTCTCAATTTCCACTGTGGATGGAGGCGTGGCACTaGCCCTCTGTGCTCTGTCCACCGAGAGGAAGGGCAGCCATTGTG +
Preference number: 5 (lower is better)
Translates to: SRQRSQFPLWMEAWH*PSVLCPPRGRAAIV
Trigger: CACAATGGCTGCCCTTCCTCTCGGTGGACAGAGCACAGAGGGCCAGTGCCACGCCTCCATCCACAGTGGAAATTGAGACCTCTGCCGACT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071404.5
CDS GCA 90 bp GGTCTCAATTTCCACTGTGGATGGAGGCGTGGCACTGGCCCTCTGTaGTCTGTCCACCGAGAGGAAGGGCAGCCATTGTGGCAGGGTTAT +
Preference number: 5 (lower is better)
Translates to: GLNFHCGWRRGTGPL*SVHREEGQPLWQGY
Trigger: ATAACCCTGCCACAATGGCTGCCCTTCCTCTCGGTGGACAGAGCACAGAGGGCCAGTGCCACGCCTCCATCCACAGTGGAAATTGAGACC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071404.5
CDS CCA 90 bp ACTGGCCCTCTGTGCTCTGTCCACCGAGAGGAAGGGCAGCCATTGTaGCAGGGTTATAGCTGTATGCCTCCGAAACAACTGCCAGAGGTA +
Preference number: 5 (lower is better)
Translates to: TGPLCSVHREEGQPL*QGYSCMPPKQLPEV
Trigger: TACCTCTGGCAGTTGTTTCGGAGGCATACAGCTATAACCCTGCCACAATGGCTGCCCTTCCTCTCGGTGGACAGAGCACAGAGGGCCAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071404.5
CDS GCA 90 bp TCCACCGAGAGGAAGGGCAGCCATTGTGGCAGGGTTATAGCTGTATaGCTCCGAAACAACTGCCAGAGGTACTTCCGGAACCGTTTACCC +
Preference number: 5 (lower is better)
Translates to: STERKGSHCGRVIAV*LRNNCQRYFRNRLP
Trigger: GGGTAAACGGTTCCGGAAGTACCTCTGGCAGTTGTTTCGGAGGCATACAGCTATAACCCTGCCACAATGGCTGCCCTTCCTCTCGGTGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071404.5
CDS-3UTR CAA 90 bp GGAGAGGCACACTGTCTTTTCACTCTTCTAGGCCTTTGTTGGCGTCCAGGGTCTTCGAAGCCTCTTGTGTaGTATGAGCACCAGAACCAC +
Preference number: 5 (lower is better)
Translates to: GEAHCLFTLLGLCWRPGSSKPLV*YEHQNH
Trigger: GTGGTTCTGGTGCTCATACAACACAAGAGGCTTCGA...AGACCCTGGACGCCAACAAAGGCCTAGAAGAGTGAAAAGACAGTGTGCCTCTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071404.5
CDS-3UTR CAA 90 bp TGTCTTGGAGAGGCACACTGTCTTTTCACTCTTCTAGGCCTTTGTTGGCGTCCATCTTCCTGGGCAAAATaGCTCTGCAGGTATGGTAAG +
Preference number: 5 (lower is better)
Translates to: CLGEAHCLFTLLGLCWRPSSWAK*LCRYGK
Trigger: CTTACCATACCTGCAGAGCAATTTTGCCCAGGAAGA...TGGACGCCAACAAAGGCCTAGAAGAGTGAAAAGACAGTGTGCCTCTCCAAGACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071404.5
CDS-3UTR CAA 90 bp CTTGGAGAGGCACACTGTCTTTTCACTCTTCTAGGCCTTTGTTGGCGTCCAGGGTTGGCCTTCTTCTTATaGGGTCTTCTGTGTAAAACA +
Preference number: 5 (lower is better)
Translates to: LGEAHCLFTLLGLCWRPGLAFFL*GLLCKT
Trigger: TGTTTTACACAGAAGACCCAATAAGAAGAAGGCCAA...CCCTGGACGCCAACAAAGGCCTAGAAGAGTGAAAAGACAGTGTGCCTCTCCAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071404.5
CDS GCA 90 bp AAAGACATAAATGACTGGGTTGACACAGCAGTGGGTGTAGGCAAGTaGTTCAGTTATCATCAAGGACAGGTCCACCTGTTGGCTTCTCAA +
Preference number: 5 (lower is better)
Translates to: KDINDWVDTAVGVGK*FSYHQGQVHLLASQ
Trigger: TTGAGAAGCCAACAGGTGGACCTGTCCTTGATGATAACTGAAGCACTTGCCTACACCCACTGCTGTGTCAACCCAGTCATTTATGTCTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071404.5
CDS-3UTR CAA 90 bp TTTTACAATGAATCCTCCATATCTGTCTTGGAGAGGCACACTGTCTTTTCACTCGGACAGGTCCACCTGTaGGCTTCTCAAACAACTAGG +
Preference number: 5 (lower is better)
Translates to: FYNESSISVLERHTVFSLGQVHL*ASQTTR
Trigger: CCTAGTTGTTTGAGAAGCCAACAGGTGGACCTGTCC...GAGTGAAAAGACAGTGTGCCTCTCCAAGACAGATATGGAGGATTCATTGTAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071404.5
CDS TCA 90 bp ACACAAACTTACACATGGCGTTACCAAAAATCCAGTCTCCTTTCATaGTATAGTCAACCCAGAAAGGTAATGTGGAGAGGAAGACCAGAT +
Preference number: 5 (lower is better)
Translates to: TQTYTWRYQKSSLLS*YSQPRKVMWRGRPD
Trigger: ATCTGGTCTTCCTCTCCACATTACCTTTCTGGGTTGACTATATCATGAAAGGAGACTGGATTTTTGGTAACGCCATGTGTAAGTTTGTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000071404.5
CDS CCA 72 bp CGGCAGAGGTCTCAATTTCCACTGTGGATGGAGGCGTaGCACTGGCCCTCTGTGCTCTGTCCACCGAGAGGA +
Preference number: 6 (lower is better)
Translates to: RQRSQFPLWMEA*HWPSVLCPPRG
Trigger: TCCTCTCGGTGGACAGAGCACAGAGGGCCAGTGCCACGCCTCCATCCACAGTGGAAATTGAGACCTCTGCCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071404.5
CDS CCA 72 bp AGGTCTCAATTTCCACTGTGGATGGAGGCGTGGCACTaGCCCTCTGTGCTCTGTCCACCGAGAGGAAGGGCA +
Preference number: 6 (lower is better)
Translates to: RSQFPLWMEAWH*PSVLCPPRGRA
Trigger: TGCCCTTCCTCTCGGTGGACAGAGCACAGAGGGCCAGTGCCACGCCTCCATCCACAGTGGAAATTGAGACCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071404.5
CDS CAA 90 bp GGCACTGGCCCTCTGTGCTCTGTCCACCGAGAGGAAGGGCAGCCATaGTGGCAGGGTTATAGCTGTATGCCTCCGAAACAACTGCCAGAG +
Preference number: 6 (lower is better)
Translates to: GTGPLCSVHREEGQP*WQGYSCMPPKQLPE
Trigger: CTCTGGCAGTTGTTTCGGAGGCATACAGCTATAACCCTGCCACAATGGCTGCCCTTCCTCTCGGTGGACAGAGCACAGAGGGCCAGTGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071404.5
CDS CAA 72 bp CCTCTGTGCTCTGTCCACCGAGAGGAAGGGCAGCCATaGTGGCAGGGTTATAGCTGTATGCCTCCGAAACAA +
Preference number: 6 (lower is better)
Translates to: PLCSVHREEGQP*WQGYSCMPPKQ
Trigger: TTGTTTCGGAGGCATACAGCTATAACCCTGCCACAATGGCTGCCCTTCCTCTCGGTGGACAGAGCACAGAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071404.5
CDS GCA 72 bp TGTGGCAGGGTTATAGCTGTATGCCTCCGAAACAACTaGCAGAGGTACTTCCGGAACCGTTTACCCACAAAG +
Preference number: 6 (lower is better)
Translates to: CGRVIAVCLRNN*QRYFRNRLPTK
Trigger: CTTTGTGGGTAAACGGTTCCGGAAGTACCTCTGGCAGTTGTTTCGGAGGCATACAGCTATAACCCTGCCACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071404.5
CDS TCA 72 bp AGATGCTGGTCATGTTTCGAAGCCTCTTGTGTTGTATaGGCACCAGAACCACCAAGACATGGCCTATCACGC +
Preference number: 6 (lower is better)
Translates to: RCWSCFEASCVV*APEPPRHGLSR
Trigger: GCGTGATAGGCCATGTCTTGGTGGTTCTGGTGCTCATACAACACAAGAGGCTTCGAAACATGACCAGCATCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071404.5
CDS GCA 72 bp AATGACTGGGTTGACACAGCAGTGGGTGTAGGCAAGTaGTTCAGTTATCATCAAGGACAGGTCCACCTGTTG +
Preference number: 6 (lower is better)
Translates to: NDWVDTAVGVGK*FSYHQGQVHLL
Trigger: CAACAGGTGGACCTGTCCTTGATGATAACTGAAGCACTTGCCTACACCCACTGCTGTGTCAACCCAGTCATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071404.5
CDS CAA 90 bp CAGGTTGAACAGGTAGATGCTGGTCATGTTTCGAAGCCTCTTGTGTaGTATGAGCACCAGAACCACCAAGACATGGCCTATCACGCCAAT +
Preference number: 6 (lower is better)
Translates to: QVEQVDAGHVSKPLV*YEHQNHQDMAYHAN
Trigger: ATTGGCGTGATAGGCCATGTCTTGGTGGTTCTGGTGCTCATACAACACAAGAGGCTTCGAAACATGACCAGCATCTACCTGTTCAACCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071404.5
CDS CAA 72 bp CAGGTAGATGCTGGTCATGTTTCGAAGCCTCTTGTGTaGTATGAGCACCAGAACCACCAAGACATGGCCTAT +
Preference number: 6 (lower is better)
Translates to: QVDAGHVSKPLV*YEHQNHQDMAY
Trigger: ATAGGCCATGTCTTGGTGGTTCTGGTGCTCATACAACACAAGAGGCTTCGAAACATGACCAGCATCTACCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071404.5
CDS CCA 72 bp AGTGCTTCAGTTATCATCAAGGACAGGTCCACCTGTTaGCTTCTCAAACAACTAGGGGTGAATAGGACGTCT +
Preference number: 6 (lower is better)
Translates to: SASVIIKDRSTC*LLKQLGVNRTS
Trigger: AGACGTCCTATTCACCCCTAGTTGTTTGAGAAGCCAACAGGTGGACCTGTCCTTGATGATAACTGAAGCACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071404.5
CDS TCA 72 bp TACACATGGCGTTACCAAAAATCCAGTCTCCTTTCATaGTATAGTCAACCCAGAAAGGTAATGTGGAGAGGA +
Preference number: 6 (lower is better)
Translates to: YTWRYQKSSLLS*YSQPRKVMWRG
Trigger: TCCTCTCCACATTACCTTTCTGGGTTGACTATATCATGAAAGGAGACTGGATTTTTGGTAACGCCATGTGTA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000071404.5
CDS CAA 72 bp AAGAGAAGCGTAATAACAAAAATCAGGCGCATGACTTaGGCCTTCTTCTTATTGGGTCTTCTGTGTAAAACA +
Preference number: 6 (lower is better)
Translates to: KRSVITKIRRMT*AFFLLGLLCKT
Trigger: TGTTTTACACAGAAGACCCAATAAGAAGAAGGCCAAAGTCATGCGCCTGATTTTTGTTATTACGCTTCTCTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071404.5