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Pregenerated sensors for CCR10 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000044052

Ensembl transcript IDs: ENSMUST00000062759.4

Found 78 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AACCCCTGTCCCTTCACACCTCCCACTGAGACGCAAGCAGGGGCGTaGGGTGTAACCCACTGTCTTGGCCTTGCTGCAACCAAAGCTGGT +
Preference number: 1 (lower is better)
Translates to: NPCPFTPPTETQAGA*GVTHCLGLAATKAG
Trigger: ACCAGCTTTGGTTGCAGCAAGGCCAAGACAGTGGGTTACACCCCACGCCCCTGCTTGCGTCTCAGTGGGAGGTGTGAAGGGACAGGGGTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
3UTR CCA 90 bp CTTTCTTACACTGACTCCCGAGGAGAAACCCCGCCCCTCCTCACCTaGCAGCTTTCCCACCTCACCTCGGTTGGCAGAGACCGAGTGAAG +
Preference number: 1 (lower is better)
Translates to: LSYTDSRGETPPLLT*QLSHLTSVGRDRVK
Trigger: CTTCACTCGGTCTCTGCCAACCGAGGTGAGGTGGGAAAGCTGCCAGGTGAGGAGGGGCGGGGTTTCTCCTCGGGAGTCAGTGTAAGAAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
3UTR TCA 90 bp TCACCTGGCAGCTTTCCCACCTCACCTCGGTTGGCAGAGACCGAGTaGAGCATAGGGCGTGTCAGTACTCAAAGCTTTAGCCGACTCAGC +
Preference number: 1 (lower is better)
Translates to: SPGSFPTSPRLAETE*SIGRVSTQSFSRLS
Trigger: GCTGAGTCGGCTAAAGCTTTGAGTACTGACACGCCCTATGCTTCACTCGGTCTCTGCCAACCGAGGTGAGGTGGGAAAGCTGCCAGGTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
3UTR TCA 90 bp CACAGAATCAATTTAATTAAGCGCAGAGGCAATCTCTTTAGATCCTaGAGTCTTTCTCAACGTCCCCCTACTTACTCCCCTTTCTATTAC +
Preference number: 1 (lower is better)
Translates to: HRINLIKRRGNLFRS*SLSQRPPTYSPFYY
Trigger: GTAATAGAAAGGGGAGTAAGTAGGGGGACGTTGAGAAAGACTTCAGGATCTAAAGAGATTGCCTCTGCGCTTAATTAAATTGATTCTGTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
3UTR CAA 90 bp GGGACAGCATCACCCCATACATTTCACACGCTGGGATCTAGGTACTaGCTAAAGCAGCCACTACTGGATAGCGATAGGGTTATTAGAAAG +
Preference number: 2 (lower is better)
Translates to: GTASPHTFHTLGSRY*LKQPLLDSDRVIRK
Trigger: CTTTCTAATAACCCTATCGCTATCCAGTAGTGGCTGCTTTAGCAAGTACCTAGATCCCAGCGTGTGAAATGTATGGGGTGATGCTGTCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
3UTR-3UTR CCA 90 bp CACTGTCTTGGCCTTGCTGCAACCAAAGCTGGTAATTCAAAAATAGTAACAGTATTCTATTACCCTCCCTaGGATTGTTTCTTTAGCCCT +
Preference number: 2 (lower is better)
Translates to: HCLGLAATKAGNSKIVTVFYYPP*DCFFSP
Trigger: AGGGCTAAAGAAACAATCCCAGGGAGGGTAATAGAA...TACTGTTACTATTTTTGAATTACCAGCTTTGGTTGCAGCAAGGCCAAGACAGTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
3UTR CCA 72 bp TGCCTCCAGCCTCTACCAGACCCACGCACGTACAGCTaGGGACAGCATCACCCCATACATTTCACACGCTGG +
Preference number: 3 (lower is better)
Translates to: CLQPLPDPRTYS*GQHHPIHFTRW
Trigger: CCAGCGTGTGAAATGTATGGGGTGATGCTGTCCCCAGCTGTACGTGCGTGGGTCTGGTAGAGGCTGGAGGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
3UTR-3UTR CAA 90 bp CCTCCAGCCTCTACCAGACCCACGCACGTACAGCTGGGGACAGCATCACCCCATGTAACAGTAGTTGGGTaGCATCTCATTTGCACAGAA +
Preference number: 3 (lower is better)
Translates to: PPASTRPTHVQLGTASPHVTVVG*HLICTE
Trigger: TTCTGTGCAAATGAGATGCAACCCAACTACTGTTAC...ATGGGGTGATGCTGTCCCCAGCTGTACGTGCGTGGGTCTGGTAGAGGCTGGAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
3UTR TCA 72 bp AGCTTTCCCACCTCACCTCGGTTGGCAGAGACCGAGTaGAGCATAGGGCGTGTCAGTACTCAAAGCTTTAGC +
Preference number: 3 (lower is better)
Translates to: SFPTSPRLAETE*SIGRVSTQSFS
Trigger: GCTAAAGCTTTGAGTACTGACACGCCCTATGCTTCACTCGGTCTCTGCCAACCGAGGTGAGGTGGGAAAGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
3UTR TCA 72 bp AATTTAATTAAGCGCAGAGGCAATCTCTTTAGATCCTaGAGTCTTTCTCAACGTCCCCCTACTTACTCCCCT +
Preference number: 3 (lower is better)
Translates to: NLIKRRGNLFRS*SLSQRPPTYSP
Trigger: AGGGGAGTAAGTAGGGGGACGTTGAGAAAGACTTCAGGATCTAAAGAGATTGCCTCTGCGCTTAATTAAATT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS-3UTR GCA 90 bp GCCTCCAGCCTCTACCAGACCCACGCACGTACAGCTGGGGACAGCATCACCCCACACCACGACGCGCAGTaGACGCCGCCGCTCTGGCCC +
Preference number: 4 (lower is better)
Translates to: ASSLYQTHARTAGDSITPHHDAQ*TPPLWP
Trigger: GGGCCAGAGCGGCGGCGTGCACTGCGCGTCGTGGTG...TGGGGTGATGCTGTCCCCAGCTGTACGTGCGTGGGTCTGGTAGAGGCTGGAGGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS-3UTR GCA 90 bp CCCTGTCCCTTCACACCTCCCACTGAGACGCAAGCAGGGGCGTGGGGTGTAACCAGTCCCCAGGAGACCTaGTCTGTGGGCTTGGTCCCC +
Preference number: 4 (lower is better)
Translates to: PCPFTPPTETQAGAWGVTSPQET*SVGLVP
Trigger: GGGGACCAAGCCCACAGAGCAGGTCTCCTGGGGACT...GGTTACACCCCACGCCCCTGCTTGCGTCTCAGTGGGAGGTGTGAAGGGACAGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS-3UTR GCA 90 bp AATCTCTTGCCTCCAGCCTCTACCAGACCCACGCACGTACAGCTGGGGACAGCAGGCGTTGAGGGCCGCTaGCCGGCTGGGAGAGCTCGT +
Preference number: 4 (lower is better)
Translates to: NLLPPASTRPTHVQLGTAGVEGR*PAGRAR
Trigger: ACGAGCTCTCCCAGCCGGGCAGCGGCCCTCAACGCC...TGCTGTCCCCAGCTGTACGTGCGTGGGTCTGGTAGAGGCTGGAGGCAAGAGATT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS-3UTR TCA 90 bp CCTCCAGCCTCTACCAGACCCACGCACGTACAGCTGGGGACAGCATCACCCCATGTTGGAAGGCCCGACTaGAAGCCTGGACATCAGCCT +
Preference number: 4 (lower is better)
Translates to: PPASTRPTHVQLGTASPHVGRPD*KPGHQP
Trigger: AGGCTGATGTCCAGGCTTTCAGTCGGGCCTTCCAAC...ATGGGGTGATGCTGTCCCCAGCTGTACGTGCGTGGGTCTGGTAGAGGCTGGAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS-3UTR GCA 90 bp CCCTGTCCCTTCACACCTCCCACTGAGACGCAAGCAGGGGCGTGGGGTGTAACCGCCCTGAAGAGCCCCTaGTGCAGCAAAAGGCAAAGT +
Preference number: 4 (lower is better)
Translates to: PCPFTPPTETQAGAWGVTALKSP*CSKRQS
Trigger: ACTTTGCCTTTTGCTGCAGCAGGGGCTCTTCAGGGC...GGTTACACCCCACGCCCCTGCTTGCGTCTCAGTGGGAGGTGTGAAGGGACAGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS-3UTR CCA 90 bp CTCCAGCCTCTACCAGACCCACGCACGTACAGCTGGGGACAGCATCACCCCATATCGTTGGCCTTCACGTaGCCCGTCCCGGCTGAAAAG +
Preference number: 4 (lower is better)
Translates to: LQPLPDPRTYSWGQHHPISLAFT*PVPAEK
Trigger: CTTTTCAGCCGGGACGGGCCACGTGAAGGCCAACGA...TATGGGGTGATGCTGTCCCCAGCTGTACGTGCGTGGGTCTGGTAGAGGCTGGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS-3UTR TCA 90 bp CTCCAGCCTCTACCAGACCCACGCACGTACAGCTGGGGACAGCATCACCCCATAGGCTTTCGGGAAAAATaGGCCGACAGCGTCGTTGGC +
Preference number: 4 (lower is better)
Translates to: LQPLPDPRTYSWGQHHPIGFREK*ADSVVG
Trigger: GCCAACGACGCTGTCGGCTCATTTTTCCCGAAAGCC...TATGGGGTGATGCTGTCCCCAGCTGTACGTGCGTGGGTCTGGTAGAGGCTGGAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS-3UTR CCA 90 bp CTCCAGCCTCTACCAGACCCACGCACGTACAGCTGGGGACAGCATCACCCCATAAGGGAGACACTGGGTTaGAAGGCCCGACTGAAAGCC +
Preference number: 4 (lower is better)
Translates to: LQPLPDPRTYSWGQHHPIRETLG*KARLKA
Trigger: GGCTTTCAGTCGGGCCTTCCAACCCAGTGTCTCCCT...TATGGGGTGATGCTGTCCCCAGCTGTACGTGCGTGGGTCTGGTAGAGGCTGGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS-3UTR GCA 90 bp CCTCCAGCCTCTACCAGACCCACGCACGTACAGCTGGGGACAGCATCACCCCATAAGACTGAAACCAAGTaGGCTCGGCTAGGCGTTGAG +
Preference number: 4 (lower is better)
Translates to: PPASTRPTHVQLGTASPHKTETK*ARLGVE
Trigger: CTCAACGCCTAGCCGAGCGCACTTGGTTTCAGTCTT...ATGGGGTGATGCTGTCCCCAGCTGTACGTGCGTGGGTCTGGTAGAGGCTGGAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS-3UTR CCA 90 bp ACTCCCCTTTCTATTACCCTCCCTGGGATTGTTTCTTTAGCCCTCCCCCTTCTCAGCCGACAGCGTCGTTaGCCTTCACGTGGCCCGTCC +
Preference number: 4 (lower is better)
Translates to: TPLSITLPGIVSLALPLLSRQRR*PSRGPS
Trigger: GGACGGGCCACGTGAAGGCCAACGACGCTGTCGGCT...GAGAAGGGGGAGGGCTAAAGAAACAATCCCAGGGAGGGTAATAGAAAGGGGAGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS-3UTR TCA 90 bp TACTCCCCTTTCTATTACCCTCCCTGGGATTGTTTCTTTAGCCCTCCCCCTTCTGGCCGAGTAGAGGCCTaGGATGGCACGGCAGGTGGT +
Preference number: 4 (lower is better)
Translates to: YSPFYYPPWDCFFSPPPSGRVEA*DGTAGG
Trigger: ACCACCTGCCGTGCCATCTCAGGCCTCTACTCGGCC...AGAAGGGGGAGGGCTAAAGAAACAATCCCAGGGAGGGTAATAGAAAGGGGAGTA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS-3UTR CCA 90 bp AATCTCTTGCCTCCAGCCTCTACCAGACCCACGCACGTACAGCTGGGGACAGCATCCCAAGAGAGACTGTaGGTCTCAGTAGGAGCAGAG +
Preference number: 4 (lower is better)
Translates to: NLLPPASTRPTHVQLGTASQERL*VSVGAE
Trigger: CTCTGCTCCTACTGAGACCCACAGTCTCTCTTGGGA...TGCTGTCCCCAGCTGTACGTGCGTGGGTCTGGTAGAGGCTGGAGGCAAGAGATT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS-3UTR TCA 90 bp CCTACTTACTCCCCTTTCTATTACCCTCCCTGGGATTGTTTCTTTAGCCCTCCCCCTAGATTCCAGCCCTaGAGAGCCCCTGCTGCAGCA +
Preference number: 4 (lower is better)
Translates to: PTYSPFYYPPWDCFFSPPPRFQP*RAPAAA
Trigger: TGCTGCAGCAGGGGCTCTTCAGGGCTGGAATCTAGG...GGGAGGGCTAAAGAAACAATCCCAGGGAGGGTAATAGAAAGGGGAGTAAGTAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS-3UTR GCA 90 bp CCTACTTACTCCCCTTTCTATTACCCTCCCTGGGATTGTTTCTTTAGCCCTCCCGACCACCTGCGCCACTaGGCTTGCCCCTTTCACAGT +
Preference number: 4 (lower is better)
Translates to: PTYSPFYYPPWDCFFSPPDHLRH*ACPFHS
Trigger: ACTGTGAAAGGGGCAAGCGCAGTGGCGCAGGTGGTC...GGGAGGGCTAAAGAAACAATCCCAGGGAGGGTAATAGAAAGGGGAGTAAGTAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS-3UTR GCA 90 bp ACTCCCCTTTCTATTACCCTCCCTGGGATTGTTTCTTTAGCCCTCCCCCTTCTCCTAGATCCTTGCGCTTaGTGGAGGAGCAGCTCCGCT +
Preference number: 4 (lower is better)
Translates to: TPLSITLPGIVSLALPLLLDPCA*WRSSSA
Trigger: AGCGGAGCTGCTCCTCCAGCAAGCGCAAGGATCTAG...GAGAAGGGGGAGGGCTAAAGAAACAATCCCAGGGAGGGTAATAGAAAGGGGAGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS-3UTR CCA 90 bp TTTCTCAACGTCCCCCTACTTACTCCCCTTTCTATTACCCTCCCTGGGATTGTTGATCCTTGCGCTTGCTaGAGGAGCAGCTCCGCTCGC +
Preference number: 4 (lower is better)
Translates to: FLNVPLLTPLSITLPGIVDPCAC*RSSSAR
Trigger: GCGAGCGGAGCTGCTCCTCCAGCAAGCGCAAGGATC...AACAATCCCAGGGAGGGTAATAGAAAGGGGAGTAAGTAGGGGGACGTTGAGAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS-3UTR GCA 90 bp TACTCCCCTTTCTATTACCCTCCCTGGGATTGTTTCTTTAGCCCTCCCCCTTCTGGTAGTTCGTCTGGCTaGCAGATGGGTGGCCAAGAC +
Preference number: 4 (lower is better)
Translates to: YSPFYYPPWDCFFSPPPSGSSSG*QMGGQD
Trigger: GTCTTGGCCACCCATCTGGCAGCCAGACGAACTACC...AGAAGGGGGAGGGCTAAAGAAACAATCCCAGGGAGGGTAATAGAAAGGGGAGTA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS-3UTR GCA 90 bp ACTCCCCTTTCTATTACCCTCCCTGGGATTGTTTCTTTAGCCCTCCCCCTTCTCGCAAAGCTAGATCCTTaGGCTTGCTGGAGGAGCAGC +
Preference number: 4 (lower is better)
Translates to: TPLSITLPGIVSLALPLLAKLDP*ACWRSS
Trigger: GCTGCTCCTCCAGCAAGCGCAAGGATCTAGCTTTGC...GAGAAGGGGGAGGGCTAAAGAAACAATCCCAGGGAGGGTAATAGAAAGGGGAGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS-3UTR CCA 90 bp ACTCCCCTTTCTATTACCCTCCCTGGGATTGTTTCTTTAGCCCTCCCCCTTCTCAGTAGAGGCCTGAGATaGCACGGCAGGTGGTACTTC +
Preference number: 4 (lower is better)
Translates to: TPLSITLPGIVSLALPLLSRGLR*HGRWYF
Trigger: GAAGTACCACCTGCCGTGCCATCTCAGGCCTCTACT...GAGAAGGGGGAGGGCTAAAGAAACAATCCCAGGGAGGGTAATAGAAAGGGGAGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS-3UTR TCA 90 bp TTTCACACGCTGGGATCTAGGTACTTGCTAAAGCAGCCACTACTGGATAGCGATCATAGCGGTCGGCGCTaGTACAGGCTAGGAAGAGGA +
Preference number: 4 (lower is better)
Translates to: FHTLGSRYLLKQPLLDSDHSGRR*YRLGRG
Trigger: TCCTCTTCCTAGCCTGTATCAGCGCCGACCGCTATG...ATCGCTATCCAGTAGTGGCTGCTTTAGCAAGTACCTAGATCCCAGCGTGTGAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS-3UTR CCA 90 bp GTAACCCACTGTCTTGGCCTTGCTGCAACCAAAGCTGGTAATTCAAAAATAGTAGGAGAGCTCGTGCGATaGCCACATAGCGGTCGGCGC +
Preference number: 4 (lower is better)
Translates to: VTHCLGLAATKAGNSKIVGELVR*PHSGRR
Trigger: GCGCCGACCGCTATGTGGCCATCGCACGAGCTCTCC...TACTATTTTTGAATTACCAGCTTTGGTTGCAGCAAGGCCAAGACAGTGGGTTAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS-3UTR TCA 90 bp CTAAAGCAGCCACTACTGGATAGCGATAGGGTTATTAGAAAGCCCTTTCTTACAGCCAACTGGAGCAGGTaGACGGAGGTGGGAGATCGG +
Preference number: 4 (lower is better)
Translates to: LKQPLLDSDRVIRKPFLTANWSR*TEVGDR
Trigger: CCGATCTCCCACCTCCGTTCACCTGCTCCAGTTGGC...TGTAAGAAAGGGCTTTCTAATAACCCTATCGCTATCCAGTAGTGGCTGCTTTAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS-3UTR GCA 90 bp GGATCCAAAAACCTACCCCAAACTAGAATCTCTTGCCTCCAGCCTCTACCAGACCTGAAGAGCCCCTGCTaGAGCAAAAGGCAAAGTCAG +
Preference number: 4 (lower is better)
Translates to: GSKNLPQTRISCLQPLPDLKSPC*SKRQSQ
Trigger: CTGACTTTGCCTTTTGCTGCAGCAGGGGCTCTTCAG...GTCTGGTAGAGGCTGGAGGCAAGAGATTCTAGTTTGGGGTAGGTTTTTGGATCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
3UTR CAA 72 bp TCACCCCATACATTTCACACGCTGGGATCTAGGTACTaGCTAAAGCAGCCACTACTGGATAGCGATAGGGTT +
Preference number: 4 (lower is better)
Translates to: SPHTFHTLGSRY*LKQPLLDSDRV
Trigger: AACCCTATCGCTATCCAGTAGTGGCTGCTTTAGCAAGTACCTAGATCCCAGCGTGTGAAATGTATGGGGTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS-3UTR GCA 90 bp GTAACCCACTGTCTTGGCCTTGCTGCAACCAAAGCTGGTAATTCAAAAATAGTACCAAGACTAGGCCATTaGCAGCCAGACCCAGTACAG +
Preference number: 4 (lower is better)
Translates to: VTHCLGLAATKAGNSKIVPRLGH*QPDPVQ
Trigger: CTGTACTGGGTCTGGCTGGCAATGGCCTAGTCTTGG...TACTATTTTTGAATTACCAGCTTTGGTTGCAGCAAGGCCAAGACAGTGGGTTAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS-3UTR CCA 90 bp GTAACCCACTGTCTTGGCCTTGCTGCAACCAAAGCTGGTAATTCAAAAATAGTAAGATGGCACGGCAGGTaGTACTTCCTAGATTCCAGC +
Preference number: 4 (lower is better)
Translates to: VTHCLGLAATKAGNSKIVRWHGR*YFLDSS
Trigger: GCTGGAATCTAGGAAGTACCACCTGCCGTGCCATCT...TACTATTTTTGAATTACCAGCTTTGGTTGCAGCAAGGCCAAGACAGTGGGTTAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS-3UTR GCA 90 bp GGTAATTCAAAAATAGTAACAGTAGTTGGGTTGCATCTCATTTGCACAGAATCAGAGCGCATAACAGGCTaGCATGACGCCCAGAGGGAG +
Preference number: 4 (lower is better)
Translates to: GNSKIVTVVGLHLICTESERITG*HDAQRE
Trigger: CTCCCTCTGGGCGTCATGGCAGCCTGTTATGCGCTC...TGATTCTGTGCAAATGAGATGCAACCCAACTACTGTTACTATTTTTGAATTACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
3UTR CAA 72 bp TTCAAAAATAGTAACAGTAGTTGGGTTGCATCTCATTaGCACAGAATCAATTTAATTAAGCGCAGAGGCAAT +
Preference number: 4 (lower is better)
Translates to: FKNSNSSWVASH*HRINLIKRRGN
Trigger: ATTGCCTCTGCGCTTAATTAAATTGATTCTGTGCAAATGAGATGCAACCCAACTACTGTTACTATTTTTGAA
35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS GCA 90 bp GGCGGAGTCGACGGGGGCAGCGGCCACGAGGGTTGGGCTTCGGGCTaGATCCTCCGCCCTGGAGCAGCCTCCGCAGGTCCCGGCGGAAAC +
Preference number: 5 (lower is better)
Translates to: GGVDGGSGHEGWASG*ILRPGAASAGPGGN
Trigger: GTTTCCGCCGGGACCTGCGGAGGCTGCTCCAGGGCGGAGGATGCAGCCCGAAGCCCAACCCTCGTGGCCGCTGCCCCCGTCGACTCCGCC
74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS GCA 90 bp CCCCCTGGCGGCCAGAAGCGTGCGGCCCAGGAGCGCATAACAGGCTaGCATGACGCCCAGAGGGAGCGCGAAGCCGAGGACCACCTGCGC +
Preference number: 5 (lower is better)
Translates to: PPGGQKRAAQERITG*HDAQREREAEDHLR
Trigger: GCGCAGGTGGTCCTCGGCTTCGCGCTCCCTCTGGGCGTCATGGCAGCCTGTTATGCGCTCCTGGGCCGCACGCTTCTGGCCGCCAGGGGG
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS CCA 90 bp GGGCAGCGGCCACGAGGGTTGGGCTTCGGGCTGCATCCTCCGCCCTaGAGCAGCCTCCGCAGGTCCCGGCGGAAACGCAGGCCCAAAAAG +
Preference number: 5 (lower is better)
Translates to: GQRPRGLGFGLHPPP*SSLRRSRRKRRPKK
Trigger: CTTTTTGGGCCTGCGTTTCCGCCGGGACCTGCGGAGGCTGCTCCAGGGCGGAGGATGCAGCCCGAAGCCCAACCCTCGTGGCCGCTGCCC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS TCA 90 bp TGGCGGCCAGAAGCGTGCGGCCCAGGAGCGCATAACAGGCTGCCATaGCGCCCAGAGGGAGCGCGAAGCCGAGGACCACCTGCGCCACTG +
Preference number: 5 (lower is better)
Translates to: WRPEACGPGAHNRLP*RPEGARSRGPPAPL
Trigger: CAGTGGCGCAGGTGGTCCTCGGCTTCGCGCTCCCTCTGGGCGTCATGGCAGCCTGTTATGCGCTCCTGGGCCGCACGCTTCTGGCCGCCA
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS GCA 90 bp CAGGCTGCCATGACGCCCAGAGGGAGCGCGAAGCCGAGGACCACCTaGGCCACTGCGCTTGCCCCTTTCACAGTCTGCGTGAGGCTTTCG +
Preference number: 5 (lower is better)
Translates to: QAAMTPRGSAKPRTT*ATALAPFTVCVRLS
Trigger: CGAAAGCCTCACGCAGACTGTGAAAGGGGCAAGCGCAGTGGCGCAGGTGGTCCTCGGCTTCGCGCTCCCTCTGGGCGTCATGGCAGCCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS GCA 90 bp GCCCAGAGGGAGCGCGAAGCCGAGGACCACCTGCGCCACTGCGCTTaGCCCTTTCACAGTCTGCGTGAGGCTTTCGGGAAAAATGAGCCG +
Preference number: 5 (lower is better)
Translates to: AQREREAEDHLRHCA*PFHSLREAFGKNEP
Trigger: CGGCTCATTTTTCCCGAAAGCCTCACGCAGACTGTGAAAGGGGCAAGCGCAGTGGCGCAGGTGGTCCTCGGCTTCGCGCTCCCTCTGGGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS-3UTR CAA 90 bp GCCTCCAGCCTCTACCAGACCCACGCACGTACAGCTGGGGACAGCATCACCCCACAGGGAGACACTGGGTaGGAAGGCCCGACTGAAAGC +
Preference number: 5 (lower is better)
Translates to: ASSLYQTHARTAGDSITPQGDTG*EGPTES
Trigger: GCTTTCAGTCGGGCCTTCCAACCCAGTGTCTCCCTG...TGGGGTGATGCTGTCCCCAGCTGTACGTGCGTGGGTCTGGTAGAGGCTGGAGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS GCA 90 bp AGAGCCAGAAACAGCGACAACAGCCACACGAAGACTGAAACCAAGTaGGCTCGGCTAGGCGTTGAGGGCCGCTGCCCGGCTGGGAGAGCT +
Preference number: 5 (lower is better)
Translates to: RARNSDNSHTKTETK*ARLGVEGRCPAGRA
Trigger: AGCTCTCCCAGCCGGGCAGCGGCCCTCAACGCCTAGCCGAGCGCACTTGGTTTCAGTCTTCGTGTGGCTGTTGTCGCTGTTTCTGGCTCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS GCA 90 bp CATGACGCCCAGAGGGAGCGCGAAGCCGAGGACCACCTGCGCCACTaGGCTTGCCCCTTTCACAGTCTGCGTGAGGCTTTCGGGAAAAAT +
Preference number: 5 (lower is better)
Translates to: HDAQREREAEDHLRH*ACPFHSLREAFGKN
Trigger: ATTTTTCCCGAAAGCCTCACGCAGACTGTGAAAGGGGCAAGCGCAGTGGCGCAGGTGGTCCTCGGCTTCGCGCTCCCTCTGGGCGTCATG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS-3UTR CAA 90 bp CAGACCCACGCACGTACAGCTGGGGACAGCATCACCCCATACATTTCACACGCTGAGCCGACAGCGTCGTaGGCCTTCACGTGGCCCGTC +
Preference number: 5 (lower is better)
Translates to: QTHARTAGDSITPYISHAEPTAS*AFTWPV
Trigger: GACGGGCCACGTGAAGGCCAACGACGCTGTCGGCTC...AGCGTGTGAAATGTATGGGGTGATGCTGTCCCCAGCTGTACGTGCGTGGGTCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS GCA 90 bp AAGCCGAGGACCACCTGCGCCACTGCGCTTGCCCCTTTCACAGTCTaGGTGAGGCTTTCGGGAAAAATGAGCCGACAGCGTCGTTGGCCT +
Preference number: 5 (lower is better)
Translates to: KPRTTCATALAPFTV*VRLSGKMSRQRRWP
Trigger: AGGCCAACGACGCTGTCGGCTCATTTTTCCCGAAAGCCTCACGCAGACTGTGAAAGGGGCAAGCGCAGTGGCGCAGGTGGTCCTCGGCTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS-3UTR CAA 90 bp ACGCACGTACAGCTGGGGACAGCATCACCCCATACATTTCACACGCTGGGATCTCAGCGGCCACGAGGGTaGGGCTTCGGGCTGCATCCT +
Preference number: 5 (lower is better)
Translates to: THVQLGTASPHTFHTLGSQRPRG*GFGLHP
Trigger: AGGATGCAGCCCGAAGCCCAACCCTCGTGGCCGCTG...AGATCCCAGCGTGTGAAATGTATGGGGTGATGCTGTCCCCAGCTGTACGTGCGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS TCA 90 bp CCAGTACAGCCACCATCAGGGAGACACTGGGTTGGAAGGCCCGACTaGAAGCCTGGACATCAGCCTTGTAACAGAGCTCTGGCAGCGGCC +
Preference number: 5 (lower is better)
Translates to: PVQPPSGRHWVGRPD*KPGHQPCNRALAAA
Trigger: GGCCGCTGCCAGAGCTCTGTTACAAGGCTGATGTCCAGGCTTTCAGTCGGGCCTTCCAACCCAGTGTCTCCCTGATGGTGGCTGTACTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS CCA 90 bp CAGCGTGGAAAGAGGCCGAGTAGAGGCCTGAGATGGCACGGCAGGTaGTACTTCCTAGATTCCAGCCCTGAAGAGCCCCTGCTGCAGCAA +
Preference number: 5 (lower is better)
Translates to: QRGKRPSRGLRWHGR*YFLDSSPEEPLLQQ
Trigger: TTGCTGCAGCAGGGGCTCTTCAGGGCTGGAATCTAGGAAGTACCACCTGCCGTGCCATCTCAGGCCTCTACTCGGCCTCTTTCCACGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS CCA 90 bp ACAGTCTGCGTGAGGCTTTCGGGAAAAATGAGCCGACAGCGTCGTTaGCCTTCACGTGGCCCGTCCCGGCTGAAAAGGAGCGCAGGTAGA +
Preference number: 5 (lower is better)
Translates to: TVCVRLSGKMSRQRR*PSRGPSRLKRSAGR
Trigger: TCTACCTGCGCTCCTTTTCAGCCGGGACGGGCCACGTGAAGGCCAACGACGCTGTCGGCTCATTTTTCCCGAAAGCCTCACGCAGACTGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS CCA 90 bp GAAGGCCCGACTGAAAGCCTGGACATCAGCCTTGTAACAGAGCTCTaGCAGCGGCCCAACCGAATAGGCCTCCTCATCGTACCCGGAGTA +
Preference number: 5 (lower is better)
Translates to: EGPTESLDISLVTEL*QRPNRIGLLIVPGV
Trigger: TACTCCGGGTACGATGAGGAGGCCTATTCGGTTGGGCCGCTGCCAGAGCTCTGTTACAAGGCTGATGTCCAGGCTTTCAGTCGGGCCTTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS-3UTR CAA 90 bp GACCCACGCACGTACAGCTGGGGACAGCATCACCCCATACATTTCACACGCTGGGCCAAGACTAGGCCATaGCCAGCCAGACCCAGTACA +
Preference number: 5 (lower is better)
Translates to: DPRTYSWGQHHPIHFTRWAKTRP*PARPST
Trigger: TGTACTGGGTCTGGCTGGCAATGGCCTAGTCTTGGC...CCAGCGTGTGAAATGTATGGGGTGATGCTGTCCCCAGCTGTACGTGCGTGGGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS-3UTR CAA 90 bp TTTCTCAACGTCCCCCTACTTACTCCCCTTTCTATTACCCTCCCTGGGATTGTTGCTAGATCCTTGCGCTaGCTGGAGGAGCAGCTCCGC +
Preference number: 5 (lower is better)
Translates to: FLNVPLLTPLSITLPGIVARSLR*LEEQLR
Trigger: GCGGAGCTGCTCCTCCAGCAAGCGCAAGGATCTAGC...AACAATCCCAGGGAGGGTAATAGAAAGGGGAGTAAGTAGGGGGACGTTGAGAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS CCA 72 bp AAAGGCGGAGTCGACGGGGGCAGCGGCCACGAGGGTTaGGCTTCGGGCTGCATCCTCCGCCCTGGAGCAGCC +
Preference number: 6 (lower is better)
Translates to: KGGVDGGSGHEG*ASGCILRPGAA
Trigger: GGCTGCTCCAGGGCGGAGGATGCAGCCCGAAGCCCAACCCTCGTGGCCGCTGCCCCCGTCGACTCCGCCTTT
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS CAA 90 bp GAGCAGGAAGAAAGGCGGAGTCGACGGGGGCAGCGGCCACGAGGGTaGGGCTTCGGGCTGCATCCTCCGCCCTGGAGCAGCCTCCGCAGG +
Preference number: 6 (lower is better)
Translates to: EQEERRSRRGQRPRG*GFGLHPPPWSSLRR
Trigger: CCTGCGGAGGCTGCTCCAGGGCGGAGGATGCAGCCCGAAGCCCAACCCTCGTGGCCGCTGCCCCCGTCGACTCCGCCTTTCTTCCTGCTC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS GCA 72 bp GGCCAGAAGCGTGCGGCCCAGGAGCGCATAACAGGCTaGCATGACGCCCAGAGGGAGCGCGAAGCCGAGGAC +
Preference number: 6 (lower is better)
Translates to: GQKRAAQERITG*HDAQREREAED
Trigger: GTCCTCGGCTTCGCGCTCCCTCTGGGCGTCATGGCAGCCTGTTATGCGCTCCTGGGCCGCACGCTTCTGGCC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS TCA 72 bp GAAGCGTGCGGCCCAGGAGCGCATAACAGGCTGCCATaGCGCCCAGAGGGAGCGCGAAGCCGAGGACCACCT +
Preference number: 6 (lower is better)
Translates to: EACGPGAHNRLP*RPEGARSRGPP
Trigger: AGGTGGTCCTCGGCTTCGCGCTCCCTCTGGGCGTCATGGCAGCCTGTTATGCGCTCCTGGGCCGCACGCTTC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS GCA 72 bp ATGACGCCCAGAGGGAGCGCGAAGCCGAGGACCACCTaGGCCACTGCGCTTGCCCCTTTCACAGTCTGCGTG +
Preference number: 6 (lower is better)
Translates to: MTPRGSAKPRTT*ATALAPFTVCV
Trigger: CACGCAGACTGTGAAAGGGGCAAGCGCAGTGGCGCAGGTGGTCCTCGGCTTCGCGCTCCCTCTGGGCGTCAT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS GCA 72 bp CAGAGGGAGCGCGAAGCCGAGGACCACCTGCGCCACTaGGCTTGCCCCTTTCACAGTCTGCGTGAGGCTTTC +
Preference number: 6 (lower is better)
Translates to: QREREAEDHLRH*ACPFHSLREAF
Trigger: GAAAGCCTCACGCAGACTGTGAAAGGGGCAAGCGCAGTGGCGCAGGTGGTCCTCGGCTTCGCGCTCCCTCTG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS CAA 72 bp AGGGTCAAGCCGCCGGTGACCAGCAAAGCTAGATCCTaGCGCTTGCTGGAGGAGCAGCTCCGCTCGCGGGCT +
Preference number: 6 (lower is better)
Translates to: RVKPPVTSKARS*RLLEEQLRSRA
Trigger: AGCCCGCGAGCGGAGCTGCTCCTCCAGCAAGCGCAAGGATCTAGCTTTGCTGGTCACCGGCGGCTTGACCCT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS CAA 90 bp ACCAGGGTCAAGCCGCCGGTGACCAGCAAAGCTAGATCCTTGCGCTaGCTGGAGGAGCAGCTCCGCTCGCGGGCTGCCAGTAGATCGGCT +
Preference number: 6 (lower is better)
Translates to: TRVKPPVTSKARSLR*LEEQLRSRAASRSA
Trigger: AGCCGATCTACTGGCAGCCCGCGAGCGGAGCTGCTCCTCCAGCAAGCGCAAGGATCTAGCTTTGCTGGTCACCGGCGGCTTGACCCTGGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS CAA 90 bp CAACGGACCAGGGTCAAGCCGCCGGTGACCAGCAAAGCTAGATCCTaGCGCTTGCTGGAGGAGCAGCTCCGCTCGCGGGCTGCCAGTAGA +
Preference number: 6 (lower is better)
Translates to: QRTRVKPPVTSKARS*RLLEEQLRSRAASR
Trigger: TCTACTGGCAGCCCGCGAGCGGAGCTGCTCCTCCAGCAAGCGCAAGGATCTAGCTTTGCTGGTCACCGGCGGCTTGACCCTGGTCCGTTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS GCA 72 bp GAGCGCGAAGCCGAGGACCACCTGCGCCACTGCGCTTaGCCCTTTCACAGTCTGCGTGAGGCTTTCGGGAAA +
Preference number: 6 (lower is better)
Translates to: EREAEDHLRHCA*PFHSLREAFGK
Trigger: TTTCCCGAAAGCCTCACGCAGACTGTGAAAGGGGCAAGCGCAGTGGCGCAGGTGGTCCTCGGCTTCGCGCTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS TCA 72 bp GACAGCGTCGTTGGCCTTCACGTGGCCCGTCCCGGCTaGAAAGGAGCGCAGGTAGAGCCAGAAACAGCGACA +
Preference number: 6 (lower is better)
Translates to: DSVVGLHVARPG*KGAQVEPETAT
Trigger: TGTCGCTGTTTCTGGCTCTACCTGCGCTCCTTTTCAGCCGGGACGGGCCACGTGAAGGCCAACGACGCTGTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS GCA 72 bp AACAGCGACAACAGCCACACGAAGACTGAAACCAAGTaGGCTCGGCTAGGCGTTGAGGGCCGCTGCCCGGCT +
Preference number: 6 (lower is better)
Translates to: NSDNSHTKTETK*ARLGVEGRCPA
Trigger: AGCCGGGCAGCGGCCCTCAACGCCTAGCCGAGCGCACTTGGTTTCAGTCTTCGTGTGGCTGTTGTCGCTGTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS CCA 72 bp GAGGTGGGAGATCGGGTAGTTCGTCTGGCTGCCAGATaGGTGGCCAAGACTAGGCCATTGCCAGCCAGACCC +
Preference number: 6 (lower is better)
Translates to: EVGDRVVRLAAR*VAKTRPLPARP
Trigger: GGGTCTGGCTGGCAATGGCCTAGTCTTGGCCACCCATCTGGCAGCCAGACGAACTACCCGATCTCCCACCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS CCA 72 bp GTGAGGCTTTCGGGAAAAATGAGCCGACAGCGTCGTTaGCCTTCACGTGGCCCGTCCCGGCTGAAAAGGAGC +
Preference number: 6 (lower is better)
Translates to: VRLSGKMSRQRR*PSRGPSRLKRS
Trigger: GCTCCTTTTCAGCCGGGACGGGCCACGTGAAGGCCAACGACGCTGTCGGCTCATTTTTCCCGAAAGCCTCAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS CAA 72 bp CGTGAGGCTTTCGGGAAAAATGAGCCGACAGCGTCGTaGGCCTTCACGTGGCCCGTCCCGGCTGAAAAGGAG +
Preference number: 6 (lower is better)
Translates to: REAFGKNEPTAS*AFTWPVPAEKE
Trigger: CTCCTTTTCAGCCGGGACGGGCCACGTGAAGGCCAACGACGCTGTCGGCTCATTTTTCCCGAAAGCCTCACG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS GCA 72 bp ACCACCTGCGCCACTGCGCTTGCCCCTTTCACAGTCTaGGTGAGGCTTTCGGGAAAAATGAGCCGACAGCGT +
Preference number: 6 (lower is better)
Translates to: TTCATALAPFTV*VRLSGKMSRQR
Trigger: ACGCTGTCGGCTCATTTTTCCCGAAAGCCTCACGCAGACTGTGAAAGGGGCAAGCGCAGTGGCGCAGGTGGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS CCA 72 bp AGCCAGCGTGGAAAGAGGCCGAGTAGAGGCCTGAGATaGCACGGCAGGTGGTACTTCCTAGATTCCAGCCCT +
Preference number: 6 (lower is better)
Translates to: SQRGKRPSRGLR*HGRWYFLDSSP
Trigger: AGGGCTGGAATCTAGGAAGTACCACCTGCCGTGCCATCTCAGGCCTCTACTCGGCCTCTTTCCACGCTGGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS CCA 72 bp AGACCCAGTACAGCCACCATCAGGGAGACACTGGGTTaGAAGGCCCGACTGAAAGCCTGGACATCAGCCTTG +
Preference number: 6 (lower is better)
Translates to: RPSTATIRETLG*KARLKAWTSAL
Trigger: CAAGGCTGATGTCCAGGCTTTCAGTCGGGCCTTCCAACCCAGTGTCTCCCTGATGGTGGCTGTACTGGGTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS CAA 72 bp CAGACCCAGTACAGCCACCATCAGGGAGACACTGGGTaGGAAGGCCCGACTGAAAGCCTGGACATCAGCCTT +
Preference number: 6 (lower is better)
Translates to: QTQYSHHQGDTG*EGPTESLDISL
Trigger: AAGGCTGATGTCCAGGCTTTCAGTCGGGCCTTCCAACCCAGTGTCTCCCTGATGGTGGCTGTACTGGGTCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS CAA 90 bp ATTGCCAGCCAGACCCAGTACAGCCACCATCAGGGAGACACTGGGTaGGAAGGCCCGACTGAAAGCCTGGACATCAGCCTTGTAACAGAG +
Preference number: 6 (lower is better)
Translates to: IASQTQYSHHQGDTG*EGPTESLDISLVTE
Trigger: CTCTGTTACAAGGCTGATGTCCAGGCTTTCAGTCGGGCCTTCCAACCCAGTGTCTCCCTGATGGTGGCTGTACTGGGTCTGGCTGGCAAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS TCA 72 bp CCACCATCAGGGAGACACTGGGTTGGAAGGCCCGACTaGAAGCCTGGACATCAGCCTTGTAACAGAGCTCTG +
Preference number: 6 (lower is better)
Translates to: PPSGRHWVGRPD*KPGHQPCNRAL
Trigger: CAGAGCTCTGTTACAAGGCTGATGTCCAGGCTTTCAGTCGGGCCTTCCAACCCAGTGTCTCCCTGATGGTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4
CDS CCA 72 bp ACTGAAAGCCTGGACATCAGCCTTGTAACAGAGCTCTaGCAGCGGCCCAACCGAATAGGCCTCCTCATCGTA +
Preference number: 6 (lower is better)
Translates to: TESLDISLVTEL*QRPNRIGLLIV
Trigger: TACGATGAGGAGGCCTATTCGGTTGGGCCGCTGCCAGAGCTCTGTTACAAGGCTGATGTCCAGGCTTTCAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062759.4