Pregenerated sensors for CCR1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025804Ensembl transcript IDs: ENSMUST00000026911.6
Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AGTGGCTTTGTTTTTAAATTAATAACCACAGATCCTATCTCTTATTaGGCCCATGCCACTCATTGTCACCTTTATTCCAGTTTCTGGAAT | + |
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Preference number: 1 (lower is better) Translates to: SGFVFKLITTDPISY*AHATHCHLYSSFWN Trigger: ATTCCAGAAACTGGAATAAAGGTGACAATGAGTGGCATGGGCCCAATAAGAGATAGGATCTGTGGTTATTAATTTAAAAACAAAGCCACT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026911.6 |
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| 3UTR TCA 72 bp | TGCCTGTGCTCAGATCATGAAGCCTATTCCGTGCAGTaGTGCACTGATGGAGCTCTTATGAGAGCTGAGCAG | + |
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Preference number: 3 (lower is better) Translates to: CLCSDHEAYSVQ*CTDGALMRAEQ Trigger: CTGCTCAGCTCTCATAAGAGCTCCATCAGTGCATCACTGCACGGAATAGGCTTCATGATCTGAGCACAGGCA 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026911.6 |
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| 3UTR-3UTR CAA 90 bp | GTTTTTAAATTAATAACCACAGATCCTATCTCTTATTGGGCCCATGCCACTCATTTTGACCCTAAAAGATaGGGAATCCTGACTGTAAGA | + |
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Preference number: 3 (lower is better) Translates to: VFKLITTDPISYWAHATHFDPKR*GILTVR Trigger: TCTTACAGTCAGGATTCCCAATCTTTTAGGGTCAAA...ATGAGTGGCATGGGCCCAATAAGAGATAGGATCTGTGGTTATTAATTTAAAAAC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000026911.6 |
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| 3UTR-3UTR CAA 90 bp | TGCCCCATTTTGTTTATTCATCTCCTTTCTAACAGAGAGAAGTTCAAGGAAACAACCTCTAAGTTTCCTTaGACCCTAAAAGATTGGGAA | + |
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Preference number: 3 (lower is better) Translates to: CPILFIHLLSNREKFKETTSKFP*TLKDWE Trigger: TTCCCAATCTTTTAGGGTCAAAGGAAACTTAGAGGT...TGTTTCCTTGAACTTCTCTCTGTTAGAAAGGAGATGAATAAACAAAATGGGGCA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000026911.6 |
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| CDS-3UTR TCA 90 bp | TTGGAGAGCTATATACTGTCTCCTCATTCTCTTCTTAGACCTTCCTTGGTTGACCAGAGACAGCCAGGTTaGACAGGTAGATGCTGGTCA | + |
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Preference number: 4 (lower is better) Translates to: LESYILSPHSLLRPSLVDQRQPG*TGRCWS Trigger: TGACCAGCATCTACCTGTTCAACCTGGCTGTCTCTG...GTCAACCAAGGAAGGTCTAAGAAGAGAATGAGGAGACAGTATATAGCTCTCCAA 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026911.6 |
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| CDS-3UTR CCA 90 bp | TTGGAGAGCTATATACTGTCTCCTCATTCTCTTCTTAGACCTTCCTTGGTTGACCTGGTCCTTTCTAGTTaGTCCACAGAGAGGAAGGGC | + |
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Preference number: 4 (lower is better) Translates to: LESYILSPHSLLRPSLVDLVLSS*STERKG Trigger: GCCCTTCCTCTCTGTGGACCAACTAGAAAGGACCAG...GTCAACCAAGGAAGGTCTAAGAAGAGAATGAGGAGACAGTATATAGCTCTCCAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026911.6 |
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| CDS-3UTR CCA 90 bp | TGGAATGCCCCATTTTGTTTATTCATCTCCTTTCTAACAGAGAGAAGTTCAAGGCCTCAGTCACCTGCATaGCCAGGTCCAGTTGCTTAC | + |
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Preference number: 4 (lower is better) Translates to: WNAPFCLFISFLTERSSRPQSPA*PGPVAY Trigger: GTAAGCAACTGGACCTGGCCATGCAGGTGACTGAGG...CCTTGAACTTCTCTCTGTTAGAAAGGAGATGAATAAACAAAATGGGGCATTCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026911.6 |
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| 3UTR CAA 72 bp | CACAGATCCTATCTCTTATTGGGCCCATGCCACTCATaGTCACCTTTATTCCAGTTTCTGGAATGCCCCATT | + |
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Preference number: 4 (lower is better) Translates to: HRSYLLLGPCHS*SPLFQFLECPI Trigger: AATGGGGCATTCCAGAAACTGGAATAAAGGTGACAATGAGTGGCATGGGCCCAATAAGAGATAGGATCTGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026911.6 |
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| CDS-3UTR TCA 90 bp | TGGAATGCCCCATTTTGTTTATTCATCTCCTTTCTAACAGAGAGAAGTTCAAGGGCCTCCTATGCTGCATaGGCACCAGAATCACTAGGA | + |
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Preference number: 4 (lower is better) Translates to: WNAPFCLFISFLTERSSRASYAA*APESLG Trigger: TCCTAGTGATTCTGGTGCTCATGCAGCATAGGAGGC...CCTTGAACTTCTCTCTGTTAGAAAGGAGATGAATAAACAAAATGGGGCATTCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026911.6 |
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| CDS-3UTR GCA 90 bp | TGCCCCATTTTGTTTATTCATCTCCTTTCTAACAGAGAGAAGTTCAAGGAAACAATCACCTCAGTCACCTaGATGGCCAGGTCCAGTTGC | + |
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Preference number: 4 (lower is better) Translates to: CPILFIHLLSNREKFKETITSVT*MARSSC Trigger: GCAACTGGACCTGGCCATGCAGGTGACTGAGGTGAT...TGTTTCCTTGAACTTCTCTCTGTTAGAAAGGAGATGAATAAACAAAATGGGGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026911.6 |
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| CDS-3UTR GCA 90 bp | TGGAGAGCTATATACTGTCTCCTCATTCTCTTCTTAGACCTTCCTTGGTTGACAACCCAGAGAGAAGCTTaGACATGGCATCACCAAAAA | + |
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Preference number: 4 (lower is better) Translates to: WRAIYCLLILFLDLPWLTTQREA*TWHHQK Trigger: TTTTTGGTGATGCCATGTGCAAGCTTCTCTCTGGGT...TGTCAACCAAGGAAGGTCTAAGAAGAGAATGAGGAGACAGTATATAGCTCTCCA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026911.6 |
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| CDS-3UTR GCA 90 bp | TGGAATGCCCCATTTTGTTTATTCATCTCCTTTCTAACAGAGAGAAGTTCAAGGGAAGGGCAGCCATTTTaGCAGTGGTATAGCCACATG | + |
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Preference number: 4 (lower is better) Translates to: WNAPFCLFISFLTERSSREGQPF*QWYSHM Trigger: CATGTGGCTATACCACTGGCAAAATGGCTGCCCTTC...CCTTGAACTTCTCTCTGTTAGAAAGGAGATGAATAAACAAAATGGGGCATTCCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000026911.6 |
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| CDS-3UTR TCA 90 bp | TGTCACCTTTATTCCAGTTTCTGGAATGCCCCATTTTGTTTATTCATCTCCTTTATGCTGGTCATGCTTTaGAGCCTCCTATGCTGCATG | + |
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Preference number: 4 (lower is better) Translates to: CHLYSSFWNAPFCLFISFMLVML*SLLCCM Trigger: CATGCAGCATAGGAGGCTTCAAAGCATGACCAGCAT...AAAGGAGATGAATAAACAAAATGGGGCATTCCAGAAACTGGAATAAAGGTGACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026911.6 |
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| CDS-3UTR CCA 90 bp | GTTTTTAAATTAATAACCACAGATCCTATCTCTTATTGGGCCCATGCCACTCATCTTACAGCAGTCTTTTaGCATGGAGTGGAGTCCCCA | + |
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Preference number: 4 (lower is better) Translates to: VFKLITTDPISYWAHATHLTAVF*HGVESP Trigger: TGGGGACTCCACTCCATGCCAAAAGACTGCTGTAAG...ATGAGTGGCATGGGCCCAATAAGAGATAGGATCTGTGGTTATTAATTTAAAAAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000026911.6 |
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| CDS-3UTR CCA 90 bp | TGGAGAGCTATATACTGTCTCCTCATTCTCTTCTTAGACCTTCCTTGGTTGACAAGAGAAGCTTGCACATaGCATCACCAAAAATCCAGT | + |
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Preference number: 4 (lower is better) Translates to: WRAIYCLLILFLDLPWLTREACT*HHQKSS Trigger: ACTGGATTTTTGGTGATGCCATGTGCAAGCTTCTCT...TGTCAACCAAGGAAGGTCTAAGAAGAGAATGAGGAGACAGTATATAGCTCTCCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026911.6 |
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| CDS-3UTR CCA 90 bp | TGGAGAGCTATATACTGTCTCCTCATTCTCTTCTTAGACCTTCCTTGGTTGACAATGTTCTCCTGTGGATaGAGATATAGAACTGGTCCT | + |
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Preference number: 4 (lower is better) Translates to: WRAIYCLLILFLDLPWLTMFSCG*RYRTGP Trigger: AGGACCAGTTCTATATCTCCATCCACAGGAGAACAT...TGTCAACCAAGGAAGGTCTAAGAAGAGAATGAGGAGACAGTATATAGCTCTCCA 42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026911.6 |
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| CDS-3UTR GCA 90 bp | GTTTTTAAATTAATAACCACAGATCCTATCTCTTATTGGGCCCATGCCACTCATGGTAGATGCTGGTCATaGTTTGAAGCCTCCTATGCT | + |
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Preference number: 4 (lower is better) Translates to: VFKLITTDPISYWAHATHGRCWS*FEASYA Trigger: AGCATAGGAGGCTTCAAAGCATGACCAGCATCTACC...ATGAGTGGCATGGGCCCAATAAGAGATAGGATCTGTGGTTATTAATTTAAAAAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026911.6 |
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| CDS-3UTR CCA 90 bp | TGCCCCATTTTGTTTATTCATCTCCTTTCTAACAGAGAGAAGTTCAAGGAAACACAGCCATTTTGCCAGTaGTATAGCCACATGCCTTTG | + |
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Preference number: 4 (lower is better) Translates to: CPILFIHLLSNREKFKETQPFCQ*YSHMPL Trigger: CAAAGGCATGTGGCTATACCACTGGCAAAATGGCTG...TGTTTCCTTGAACTTCTCTCTGTTAGAAAGGAGATGAATAAACAAAATGGGGCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000026911.6 |
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| CDS-3UTR TCA 90 bp | TGGAATGCCCCATTTTGTTTATTCATCTCCTTTCTAACAGAGAGAAGTTCAAGGGCTCACACTGATTGGTaGATAGAACATCTTGGAAAG | + |
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Preference number: 4 (lower is better) Translates to: WNAPFCLFISFLTERSSRAHTDW*IEHLGK Trigger: CTTTCCAAGATGTTCTATTCACCAATCAGTGTGAGC...CCTTGAACTTCTCTCTGTTAGAAAGGAGATGAATAAACAAAATGGGGCATTCCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026911.6 |
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| CDS-3UTR TCA 90 bp | TGTCACCTTTATTCCAGTTTCTGGAATGCCCCATTTTGTTTATTCATCTCCTTTTCCAGAAAGGTAAAGTaGAAAGGAAGACCAGATCAG | + |
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Preference number: 4 (lower is better) Translates to: CHLYSSFWNAPFCLFISFSRKVK*KGRPDQ Trigger: CTGATCTGGTCTTCCTTTTCACTTTACCTTTCTGGA...AAAGGAGATGAATAAACAAAATGGGGCATTCCAGAAACTGGAATAAAGGTGACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000026911.6 |
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| CDS-3UTR CCA 90 bp | TGCCCCATTTTGTTTATTCATCTCCTTTCTAACAGAGAGAAGTTCAAGGAAACATCTTTTGGCATGGAGTaGAGTCCCCATAGTCAAATT | + |
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Preference number: 4 (lower is better) Translates to: CPILFIHLLSNREKFKETSFGME*SPHSQI Trigger: AATTTGACTATGGGGACTCCACTCCATGCCAAAAGA...TGTTTCCTTGAACTTCTCTCTGTTAGAAAGGAGATGAATAAACAAAATGGGGCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000026911.6 |
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| CDS-3UTR CCA 90 bp | TGGAGAGCTATATACTGTCTCCTCATTCTCTTCTTAGACCTTCCTTGGTTGACAAAAAACATAAATGATTaGGTTGACACAACAGTGGGT | + |
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Preference number: 4 (lower is better) Translates to: WRAIYCLLILFLDLPWLTKNIND*VDTTVG Trigger: ACCCACTGTTGTGTCAACCCAATCATTTATGTTTTT...TGTCAACCAAGGAAGGTCTAAGAAGAGAATGAGGAGACAGTATATAGCTCTCCA 39% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000026911.6 |
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| 3UTR CAA 72 bp | TTGTCACCTTTATTCCAGTTTCTGGAATGCCCCATTTaGTTTATTCATCTCCTTTCTAACAGAGAGAAGTTC | + |
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Preference number: 4 (lower is better) Translates to: LSPLFQFLECPI*FIHLLSNREKF Trigger: GAACTTCTCTCTGTTAGAAAGGAGATGAATAAACAAAATGGGGCATTCCAGAAACTGGAATAAAGGTGACAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026911.6 |
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| CDS TCA 90 bp | GAGAGGAAGGGCAGCCATTTTGCCAGTGGTATAGCCACATGCCTTTaGAACAGCTGCCGAAGGTACTTCCAGAACCGTTCACCCACAAAA | + |
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Preference number: 5 (lower is better) Translates to: ERKGSHFASGIATCL*NSCRRYFQNRSPTK Trigger: TTTTGTGGGTGAACGGTTCTGGAAGTACCTTCGGCAGCTGTTTCAAAGGCATGTGGCTATACCACTGGCAAAATGGCTGCCCTTCCTCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026911.6 |
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| CDS-3UTR CAA 90 bp | TGGAGAGCTATATACTGTCTCCTCATTCTCTTCTTAGACCTTCCTTGGTTGACATATAGCCACATGCCTTaGAAACAGCTGCCGAAGGTA | + |
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Preference number: 5 (lower is better) Translates to: WRAIYCLLILFLDLPWLTYSHMP*KQLPKV Trigger: TACCTTCGGCAGCTGTTTCAAAGGCATGTGGCTATA...TGTCAACCAAGGAAGGTCTAAGAAGAGAATGAGGAGACAGTATATAGCTCTCCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026911.6 |
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| CDS-3UTR CAA 90 bp | GTTTTTAAATTAATAACCACAGATCCTATCTCTTATTGGGCCCATGCCACTCATTCTTACAGCAGTCTTTaGGCATGGAGTGGAGTCCCC | + |
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Preference number: 5 (lower is better) Translates to: VFKLITTDPISYWAHATHSYSSL*AWSGVP Trigger: GGGGACTCCACTCCATGCCAAAAGACTGCTGTAAGA...ATGAGTGGCATGGGCCCAATAAGAGATAGGATCTGTGGTTATTAATTTAAAAAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026911.6 |
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| CDS CCA 90 bp | CACTGTATAAACCCAGGTAATAAAACCCAGAGAGAAGCTTGCACATaGCATCACCAAAAATCCAGTCGTCTTTCAACTTGTAGTCAATCC | + |
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Preference number: 5 (lower is better) Translates to: HCINPGNKTQREACT*HHQKSSRLSTCSQS Trigger: GGATTGACTACAAGTTGAAAGACGACTGGATTTTTGGTGATGCCATGTGCAAGCTTCTCTCTGGGTTTTATTACCTGGGTTTATACAGTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026911.6 |
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| CDS-3UTR CAA 90 bp | GTTTTTAAATTAATAACCACAGATCCTATCTCTTATTGGGCCCATGCCACTCATGATGCTGGTCATGCTTaGAAGCCTCCTATGCTGCAT | + |
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Preference number: 5 (lower is better) Translates to: VFKLITTDPISYWAHATHDAGHA*KPPMLH Trigger: ATGCAGCATAGGAGGCTTCAAAGCATGACCAGCATC...ATGAGTGGCATGGGCCCAATAAGAGATAGGATCTGTGGTTATTAATTTAAAAAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026911.6 |
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| CDS GCA 90 bp | AGATCTCACTGTATAAACCCAGGTAATAAAACCCAGAGAGAAGCTTaGACATGGCATCACCAAAAATCCAGTCGTCTTTCAACTTGTAGT | + |
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Preference number: 5 (lower is better) Translates to: RSHCINPGNKTQREA*TWHHQKSSRLSTCS Trigger: ACTACAAGTTGAAAGACGACTGGATTTTTGGTGATGCCATGTGCAAGCTTCTCTCTGGGTTTTATTACCTGGGTTTATACAGTGAGATCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026911.6 |
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| CDS-3UTR CAA 90 bp | TGCCCCATTTTGTTTATTCATCTCCTTTCTAACAGAGAGAAGTTCAAGGAAACAAACCCAGAGAGAAGCTaGCACATGGCATCACCAAAA | + |
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Preference number: 5 (lower is better) Translates to: CPILFIHLLSNREKFKETNPERS*HMASPK Trigger: TTTTGGTGATGCCATGTGCAAGCTTCTCTCTGGGTT...TGTTTCCTTGAACTTCTCTCTGTTAGAAAGGAGATGAATAAACAAAATGGGGCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026911.6 |
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| CDS CCA 72 bp | AACAGTGGGTGTAGGCAATCACCTCAGTCACCTGCATaGCCAGGTCCAGTTGCTTACTCTGCTCACACTGAT | + |
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Preference number: 6 (lower is better) Translates to: NSGCRQSPQSPA*PGPVAYSAHTD Trigger: ATCAGTGTGAGCAGAGTAAGCAACTGGACCTGGCCATGCAGGTGACTGAGGTGATTGCCTACACCCACTGTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026911.6 |
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| CDS CAA 90 bp | AGAGAGGAAGGGCAGCCATTTTGCCAGTGGTATAGCCACATGCCTTaGAAACAGCTGCCGAAGGTACTTCCAGAACCGTTCACCCACAAA | + |
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Preference number: 6 (lower is better) Translates to: REEGQPFCQWYSHMP*KQLPKVLPEPFTHK Trigger: TTTGTGGGTGAACGGTTCTGGAAGTACCTTCGGCAGCTGTTTCAAAGGCATGTGGCTATACCACTGGCAAAATGGCTGCCCTTCCTCTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026911.6 |
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| CDS TCA 72 bp | GGCAGCCATTTTGCCAGTGGTATAGCCACATGCCTTTaGAACAGCTGCCGAAGGTACTTCCAGAACCGTTCA | + |
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Preference number: 6 (lower is better) Translates to: GSHFASGIATCL*NSCRRYFQNRS Trigger: TGAACGGTTCTGGAAGTACCTTCGGCAGCTGTTTCAAAGGCATGTGGCTATACCACTGGCAAAATGGCTGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026911.6 |
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| CDS CAA 72 bp | CAGGAGTCCAGCCCCAAAGGCTCTTACAGCAGTCTTTaGGCATGGAGTGGAGTCCCCATAGTCAAATTCTGT | + |
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Preference number: 6 (lower is better) Translates to: QESSPKGSYSSL*AWSGVPIVKFC Trigger: ACAGAATTTGACTATGGGGACTCCACTCCATGCCAAAAGACTGCTGTAAGAGCCTTTGGGGCTGGACTCCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026911.6 |
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| CDS TCA 72 bp | TGCATGGCCAGGTCCAGTTGCTTACTCTGCTCACACTaGTTGGTGAATAGAACATCTTGGAAAGCAGAAACA | + |
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Preference number: 6 (lower is better) Translates to: CMARSSCLLCSH*LVNRTSWKAET Trigger: TGTTTCTGCTTTCCAAGATGTTCTATTCACCAATCAGTGTGAGCAGAGTAAGCAACTGGACCTGGCCATGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026911.6 |
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| CDS CAA 90 bp | AGGAGGAAGAATAGAAGAGTAATAGCAAATATCAGACGCACGGCTTaGACCTTCTTCTCACTGGGTCTTCTGAGCAGAATTCTGATGATC | + |
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Preference number: 6 (lower is better) Translates to: RRKNRRVIANIRRTA*TFFSLGLLSRILMI Trigger: GATCATCAGAATTCTGCTCAGAAGACCCAGTGAGAAGAAGGTCAAAGCCGTGCGTCTGATATTTGCTATTACTCTTCTATTCTTCCTCCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026911.6 |
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| CDS CCA 72 bp | AACCCAGGTAATAAAACCCAGAGAGAAGCTTGCACATaGCATCACCAAAAATCCAGTCGTCTTTCAACTTGT | + |
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Preference number: 6 (lower is better) Translates to: NPGNKTQREACT*HHQKSSRLSTC Trigger: ACAAGTTGAAAGACGACTGGATTTTTGGTGATGCCATGTGCAAGCTTCTCTCTGGGTTTTATTACCTGGGTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026911.6 |
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| CDS GCA 72 bp | TGTATAAACCCAGGTAATAAAACCCAGAGAGAAGCTTaGACATGGCATCACCAAAAATCCAGTCGTCTTTCA | + |
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Preference number: 6 (lower is better) Translates to: CINPGNKTQREA*TWHHQKSSRLS Trigger: TGAAAGACGACTGGATTTTTGGTGATGCCATGTGCAAGCTTCTCTCTGGGTTTTATTACCTGGGTTTATACA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026911.6 |
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| CDS CAA 72 bp | AATAGAAGAGTAATAGCAAATATCAGACGCACGGCTTaGACCTTCTTCTCACTGGGTCTTCTGAGCAGAATT | + |
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Preference number: 6 (lower is better) Translates to: NRRVIANIRRTA*TFFSLGLLSRI Trigger: AATTCTGCTCAGAAGACCCAGTGAGAAGAAGGTCAAAGCCGTGCGTCTGATATTTGCTATTACTCTTCTATT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026911.6 |
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