RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CCNK (Mus musculus)

Ensembl gene IDs: ENSMUSG00000021258

Ensembl transcript IDs: ENSMUST00000101055.5, ENSMUST00000221167.2

Found 206 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCACACTaGAACTGTCTAGCATATACAAGGCGCCCTGCTGCCGCCCCCTCA +
Preference number: 1 (lower is better)
Translates to: LPRAHSSCQGPALPH*NCLAYTRRPAAAPS
Trigger: TGAGGGGGCGGCAGCAGGGCGCCTTGTATATGCTAGACAGTTGCAGTGTGGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
3UTR GCA 90 bp CCCAGCCCTCCCACACTGCAACTGTCTAGCATATACAAGGCGCCCTaGTGCCGCCCCCTCAGTCTATTCTTCAAGTTGGTTGGAAAACAA +
Preference number: 1 (lower is better)
Translates to: PSPPTLQLSSIYKAP*CRPLSLFFKLVGKQ
Trigger: TTGTTTTCCAACCAACTTGAAGAATAGACTGAGGGGGCGGCAGCAGGGCGCCTTGTATATGCTAGACAGTTGCAGTGTGGGAGGGCTGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
3UTR GCA 90 bp AGCCCTCCCACACTGCAACTGTCTAGCATATACAAGGCGCCCTGCTaGCGCCCCCTCAGTCTATTCTTCAAGTTGGTTGGAAAACAATTC +
Preference number: 1 (lower is better)
Translates to: SPPTLQLSSIYKAPC*RPLSLFFKLVGKQF
Trigger: GAATTGTTTTCCAACCAACTTGAAGAATAGACTGAGGGGGCGGCAGCAGGGCGCCTTGTATATGCTAGACAGTTGCAGTGTGGGAGGGCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
3UTR-3UTR TCA 90 bp AGAGGACAGAGTTACAAGCTAAGTGGGGAGTCACCTCACCTACTAGGGGCCACAAGCGGGGACTGGATGTaGTCACACCACAGCAGGCAC +
Preference number: 2 (lower is better)
Translates to: RGQSYKLSGESPHLLGATSGDWM*SHHSRH
Trigger: GTGCCTGCTGTGGTGTGATCACATCCAGTCCCCGCT...TGTGGCCCCTAGTAGGTGAGGTGACTCCCCACTTAGCTTGTAACTCTGTCCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
3UTR-3UTR GCA 90 bp TCCTTACTGAAGCTATTAACTGAGCCAATGTGGCTACTTAACATCTTCACTAGTATTAAAGTAGCCCCGTaGAGGACACAGACGGCAGCG +
Preference number: 2 (lower is better)
Translates to: SLLKLLTEPMWLLNIFTSIKVAP*RTQTAA
Trigger: CGCTGCCGTCTGTGTCCTGCACGGGGCTACTTTAAT...ACTAGTGAAGATGTTAAGTAGCCACATTGGCTCAGTTAATAGCTTCAGTAAGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
3UTR CAA 90 bp ATATCTCTCTATGTACAAGACTTTGCAAAGAGATGTAAACATACATaGTTTTCCAAGTACACACCTCCTTTCTCCATGGAGGGAAGGAGA +
Preference number: 2 (lower is better)
Translates to: ISLYVQDFAKRCKHT*FSKYTPPFSMEGRR
Trigger: TCTCCTTCCCTCCATGGAGAAAGGAGGTGTGTACTTGGAAAACAATGTATGTTTACATCTCTTTGCAAAGTCTTGTACATAGAGAGATAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
3UTR GCA 72 bp ACACCACAGCAGGCACTGCCCAGGGCACACAGTTCATaGCAGGGCCCAGCCCTCCCACACTGCAACTGTCTA +
Preference number: 3 (lower is better)
Translates to: TPQQALPRAHSS*QGPALPHCNCL
Trigger: TAGACAGTTGCAGTGTGGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTGCTGTGGTGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
3UTR GCA 72 bp GCACACAGTTCATGCCAGGGCCCAGCCCTCCCACACTaGAACTGTCTAGCATATACAAGGCGCCCTGCTGCC +
Preference number: 3 (lower is better)
Translates to: AHSSCQGPALPH*NCLAYTRRPAA
Trigger: GGCAGCAGGGCGCCTTGTATATGCTAGACAGTTGCAGTGTGGGAGGGCTGGGCCCTGGCATGAACTGTGTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
3UTR GCA 72 bp CCCACACTGCAACTGTCTAGCATATACAAGGCGCCCTaGTGCCGCCCCCTCAGTCTATTCTTCAAGTTGGTT +
Preference number: 3 (lower is better)
Translates to: PTLQLSSIYKAP*CRPLSLFFKLV
Trigger: AACCAACTTGAAGAATAGACTGAGGGGGCGGCAGCAGGGCGCCTTGTATATGCTAGACAGTTGCAGTGTGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
3UTR CCA 72 bp ATACATTGTTTTCCAAGTACACACCTCCTTTCTCCATaGAGGGAAGGAGACAGCCACCCGTCAAGGCAGCCC +
Preference number: 3 (lower is better)
Translates to: IHCFPSTHLLSP*REGDSHPSRQP
Trigger: GGGCTGCCTTGACGGGTGGCTGTCTCCTTCCCTCCATGGAGAAAGGAGGTGTGTACTTGGAAAACAATGTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
3UTR GCA 72 bp CTACTTAACATCTTCACTAGTATTAAAGTAGCCCCGTaGAGGACACAGACGGCAGCGGGGACTGGATGTGAT +
Preference number: 3 (lower is better)
Translates to: LLNIFTSIKVAP*RTQTAAGTGCD
Trigger: ATCACATCCAGTCCCCGCTGCCGTCTGTGTCCTGCACGGGGCTACTTTAATACTAGTGAAGATGTTAAGTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp CAGCAGGCACTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCACACCCACCACGGCGCGCTTaGCCTGTCGGGGAGGACTGG +
Preference number: 4 (lower is better)
Translates to: QQALPRAHSSCQGPALPHPPRRA*PVGEDW
Trigger: CCAGTCCTCCCCGACAGGCCAAGCGCGCCGTGGTGG...GTGTGGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTGCTG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp ACCACAGCAGGCACTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCGGCAATGGTGGGGGCTaGTGCACAGGGGCCGGGTGG +
Preference number: 4 (lower is better)
Translates to: TTAGTAQGTQFMPGPSPPGNGGG*CTGAGW
Trigger: CCACCCGGCCCCTGTGCACCAGCCCCCACCATTGCC...GGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTGCTGTGGT
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR GCA 90 bp CCACAGCAGGCACTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCAAATGGTGGGGGCTGGTaGACAGGGGCCGGGTGGGCT +
Preference number: 4 (lower is better)
Translates to: PQQALPRAHSSCQGPALPNGGGW*TGAGWA
Trigger: AGCCCACCCGGCCCCTGTGCACCAGCCCCCACCATT...TGGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTGCTGTGG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp CCACAGCAGGCACTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCAGGAGGGTGGCGGGGGTaGTGGCCGATGTGGCAATGG +
Preference number: 4 (lower is better)
Translates to: PQQALPRAHSSCQGPALPGGWRG*WPMWQW
Trigger: CCATTGCCACATCGGCCACCACCCCCGCCACCCTCC...TGGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTGCTGTGG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp CAGGCACTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCACACTGCCATGTAGCTGGAGGGTaGCGGGGGTGGTGGCCGATG +
Preference number: 4 (lower is better)
Translates to: QALPRAHSSCQGPALPHCHVAGG*RGWWPM
Trigger: CATCGGCCACCACCCCCGCCACCCTCCAGCTACATG...GCAGTGTGGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp CAGGCACTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCACACTGCAGGTGGGCCGTAGGCTaGGGGCAGGGCACCATAGGA +
Preference number: 4 (lower is better)
Translates to: QALPRAHSSCQGPALPHCRWAVG*GQGTIG
Trigger: TCCTATGGTGCCCTGCCCCCAGCCTACGGCCCACCT...GCAGTGTGGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp CCACAGCAGGCACTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCAAGGGACTGCATGAGTTaGGGGCAGGCGTGGGGGTGG +
Preference number: 4 (lower is better)
Translates to: PQQALPRAHSSCQGPALPRDCMS*GQAWGW
Trigger: CCACCCCCACGCCTGCCCCCAACTCATGCAGTCCCT...TGGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTGCTGTGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp CAGGCACTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCACACTGCTGGCCGATGTGGCAATaGTGGGGGCTGGTGCACAGG +
Preference number: 4 (lower is better)
Translates to: QALPRAHSSCQGPALPHCWPMWQ*WGLVHR
Trigger: CCTGTGCACCAGCCCCCACCATTGCCACATCGGCCA...GCAGTGTGGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp ACCACAGCAGGCACTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCAGGTGGCATACCAGGTaGGGGGATGGGTGGGGGAAC +
Preference number: 4 (lower is better)
Translates to: TTAGTAQGTQFMPGPSPPRWHTR*GDGWGN
Trigger: GTTCCCCCACCCATCCCCCCACCTGGTATGCCACCT...GGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTGCTGTGGT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR TCA 90 bp CCACAGCAGGCACTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCATGCCCACATCAAAGATaGAGCGAGCCCCCTCTCGGC +
Preference number: 4 (lower is better)
Translates to: PQQALPRAHSSCQGPALPCPHQR*SEPPLG
Trigger: GCCGAGAGGGGGCTCGCTTCATCTTTGATGTGGGCA...TGGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTGCTGTGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR TCA 90 bp CAGGCACTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCACACTGCCTGTTGCTGCTGGGCTaGCTGCTGCGAGTCCTTCTG +
Preference number: 4 (lower is better)
Translates to: QALPRAHSSCQGPALPHCLLLLG*LLRVLL
Trigger: CAGAAGGACTCGCAGCAGTCAGCCCAGCAGCAACAG...GCAGTGTGGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR GCA 90 bp CCACAGCAGGCACTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCATGCTGGGCTGACTGCTaGGAGTCCTTCTGTGGAGGC +
Preference number: 4 (lower is better)
Translates to: PQQALPRAHSSCQGPALPCWADC*ESFCGG
Trigger: GCCTCCACAGAAGGACTCGCAGCAGTCAGCCCAGCA...TGGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTGCTGTGG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR GCA 90 bp ACCACAGCAGGCACTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCTGCTGGGCTGACTGCTaGGAGTCCTTCTGTGGAGGC +
Preference number: 4 (lower is better)
Translates to: TTAGTAQGTQFMPGPSPPCWADC*ESFCGG
Trigger: GCCTCCACAGAAGGACTCGCAGCAGTCAGCCCAGCA...GGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTGCTGTGGT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR GCA 90 bp CCTCCCACACTGCAACTGTCTAGCATATACAAGGCGCCCTGCTGCCGCCCCCTCAATGGTGGGGGCTGGTaGACAGGGGCCGGGTGGGCT +
Preference number: 4 (lower is better)
Translates to: PPTLQLSSIYKAPCCRPLNGGGW*TGAGWA
Trigger: AGCCCACCCGGCCCCTGTGCACCAGCCCCCACCATT...GAGGGGGCGGCAGCAGGGCGCCTTGTATATGCTAGACAGTTGCAGTGTGGGAGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp CAGCAGGCACTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCACACCTTCCGGTCTGGAGGTaGGTGTGCTGGAGGCAATGG +
Preference number: 4 (lower is better)
Translates to: QQALPRAHSSCQGPALPHLPVWR*VCWRQW
Trigger: CCATTGCCTCCAGCACACCCACCTCCAGACCGGAAG...GTGTGGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTGCTG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp CACAGACGGCAGCGGGGACTGGATGTGATCACACCACAGCAGGCACTGCCCAGGTCCCCGTCATGTAGCTaGAGGGTGGCGGGGGTGGTG +
Preference number: 4 (lower is better)
Translates to: HRRQRGLDVITPQQALPRSPSCS*RVAGVV
Trigger: CACCACCCCCGCCACCCTCCAGCTACATGACGGGGA...CCTGGGCAGTGCCTGCTGTGGTGTGATCACATCCAGTCCCCGCTGCCGTCTGTG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp ACCACAGCAGGCACTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCAGGTGGGTAGCTGGCTaGTGGCAAACCCAAGCCTGG +
Preference number: 4 (lower is better)
Translates to: TTAGTAQGTQFMPGPSPPRWVAG*WQTQAW
Trigger: CCAGGCTTGGGTTTGCCACCAGCCAGCTACCCACCT...GGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTGCTGTGGT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp CAGGCACTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCACACTGCCTGGAGGTGGGTAGCTaGCTGGTGGCAAACCCAAGC +
Preference number: 4 (lower is better)
Translates to: QALPRAHSSCQGPALPHCLEVGS*LVANPS
Trigger: GCTTGGGTTTGCCACCAGCCAGCTACCCACCTCCAG...GCAGTGTGGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR TCA 90 bp ACCACAGCAGGCACTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCTGGTTCCCACTGCAGTaGCAGGGTGGTGCAGAGACT +
Preference number: 4 (lower is better)
Translates to: TTAGTAQGTQFMPGPSPPWFPLQ*QGGAET
Trigger: AGTCTCTGCACCACCCTGTCACTGCAGTGGGAACCA...GGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTGCTGTGGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR TCA 90 bp CAGGCACTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCACACTGCGCTGCTTCTGAGCCTTaGGATGGTTGGGACTGTGGC +
Preference number: 4 (lower is better)
Translates to: QALPRAHSSCQGPALPHCAASEP*DGWDCG
Trigger: GCCACAGTCCCAACCATCTCAAGGCTCAGAAGCAGC...GCAGTGTGGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR GCA 90 bp ACCACAGCAGGCACTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCTGCTGCTGGGCTGACTaGTGCGAGTCCTTCTGTGGA +
Preference number: 4 (lower is better)
Translates to: TTAGTAQGTQFMPGPSPPCCWAD*CESFCG
Trigger: TCCACAGAAGGACTCGCAGCAGTCAGCCCAGCAGCA...GGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTGCTGTGGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR GCA 90 bp CAGGCACTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCACACTGCGGCTGTTGTGCTTGCTaGTGTTGCTGCTGGGCTGAC +
Preference number: 4 (lower is better)
Translates to: QALPRAHSSCQGPALPHCGCCAC*CCCWAD
Trigger: GTCAGCCCAGCAGCAACAGCAGCAAGCACAACAGCC...GCAGTGTGGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp CAGCAGGCACTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCACACCCGGGCCTCAGTGGCTaGATCGAGTCCTTCAAGTTG +
Preference number: 4 (lower is better)
Translates to: QQALPRAHSSCQGPALPHPGLSG*IESFKL
Trigger: CAACTTGAAGGACTCGATCCAGCCACTGAGGCCCGG...GTGTGGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTGCTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp CAGCAGGCACTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCACACTGGAGGTGGGTGTGCTaGAGGCAATGGTGGGTGAGT +
Preference number: 4 (lower is better)
Translates to: QQALPRAHSSCQGPALPHWRWVC*RQWWVS
Trigger: ACTCACCCACCATTGCCTCCAGCACACCCACCTCCA...GTGTGGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTGCTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp CCTCCCACACTGCAACTGTCTAGCATATACAAGGCGCCCTGCTGCCGCCCCCTCCCGATGTGGCAATGGTaGGGGCTGGTGCACAGGGGC +
Preference number: 4 (lower is better)
Translates to: PPTLQLSSIYKAPCCRPLPMWQW*GLVHRG
Trigger: GCCCCTGTGCACCAGCCCCCACCATTGCCACATCGG...GAGGGGGCGGCAGCAGGGCGCCTTGTATATGCTAGACAGTTGCAGTGTGGGAGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR TCA 90 bp ACCACAGCAGGCACTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCCTGATAGCCCTCTCCTaGCATGTAGGAGCTGGTGGT +
Preference number: 4 (lower is better)
Translates to: TTAGTAQGTQFMPGPSPPLIALS*HVGAGG
Trigger: ACCACCAGCTCCTACATGTCAGGAGAGGGCTATCAG...GGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTGCTGTGGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR GCA 90 bp CAGGCACTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCACACTGCATCTCTGGTTCCCACTaGAGTGACAGGGTGGTGCAG +
Preference number: 4 (lower is better)
Translates to: QALPRAHSSCQGPALPHCISGSH*SDRVVQ
Trigger: CTGCACCACCCTGTCACTGCAGTGGGAACCAGAGAT...GCAGTGTGGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR GCA 90 bp CAGCAGGCACTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCACACATCTCTGGTTCCCACTaGAGTGACAGGGTGGTGCAG +
Preference number: 4 (lower is better)
Translates to: QQALPRAHSSCQGPALPHISGSH*SDRVVQ
Trigger: CTGCACCACCCTGTCACTGCAGTGGGAACCAGAGAT...GTGTGGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTGCTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR GCA 90 bp CAGCAGGCACTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCACACTTGGGCTGTTGTGCTTaGTGCTGTTGCTGCTGGGCT +
Preference number: 4 (lower is better)
Translates to: QQALPRAHSSCQGPALPHLGCCA*CCCCWA
Trigger: AGCCCAGCAGCAACAGCAGCAAGCACAACAGCCCAA...GTGTGGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTGCTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp CAGGCACTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCACACTGCGTGTGCTGGAGGCAATaGTGGGTGAGTAGCCTCAAG +
Preference number: 4 (lower is better)
Translates to: QALPRAHSSCQGPALPHCVCWRQ*WVSSLK
Trigger: CTTGAGGCTACTCACCCACCATTGCCTCCAGCACAC...GCAGTGTGGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp CCCAGCCCTCCCACACTGCAACTGTCTAGCATATACAAGGCGCCCTGCTGCCGCTGGCCGATGTGGCAATaGTGGGGGCTGGTGCACAGG +
Preference number: 4 (lower is better)
Translates to: PSPPTLQLSSIYKAPCCRWPMWQ*WGLVHR
Trigger: CCTGTGCACCAGCCCCCACCATTGCCACATCGGCCA...GCGGCAGCAGGGCGCCTTGTATATGCTAGACAGTTGCAGTGTGGGAGGGCTGGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp CCACAGCAGGCACTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCATGTAGGAGCTGGTGGTaGACATCCCCGTCATGTAGC +
Preference number: 4 (lower is better)
Translates to: PQQALPRAHSSCQGPALPCRSWW*TSPSCS
Trigger: GCTACATGACGGGGATGTCCACCACCAGCTCCTACA...TGGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTGCTGTGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp CACAGACGGCAGCGGGGACTGGATGTGATCACACCACAGCAGGCACTGCCCAGGTGGGTAGCTGGCTGGTaGCAAACCCAAGCCTGGAGG +
Preference number: 4 (lower is better)
Translates to: HRRQRGLDVITPQQALPRWVAGW*QTQAWR
Trigger: CCTCCAGGCTTGGGTTTGCCACCAGCCAGCTACCCA...CCTGGGCAGTGCCTGCTGTGGTGTGATCACATCCAGTCCCCGCTGCCGTCTGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp CACAGACGGCAGCGGGGACTGGATGTGATCACACCACAGCAGGCACTGCCCAGGAGGTGGGTAGCTGGCTaGTGGCAAACCCAAGCCTGG +
Preference number: 4 (lower is better)
Translates to: HRRQRGLDVITPQQALPRRWVAG*WQTQAW
Trigger: CCAGGCTTGGGTTTGCCACCAGCCAGCTACCCACCT...CCTGGGCAGTGCCTGCTGTGGTGTGATCACATCCAGTCCCCGCTGCCGTCTGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp CACAGACGGCAGCGGGGACTGGATGTGATCACACCACAGCAGGCACTGCCCAGGGGTACCGGGCCTCAGTaGCTGGATCGAGTCCTTCAA +
Preference number: 4 (lower is better)
Translates to: HRRQRGLDVITPQQALPRGTGPQ*LDRVLQ
Trigger: TTGAAGGACTCGATCCAGCCACTGAGGCCCGGTACC...CCTGGGCAGTGCCTGCTGTGGTGTGATCACATCCAGTCCCCGCTGCCGTCTGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp CAGGCACTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCACACTGCCTTTGTTCTCTTCCTTaGGAGAAACCACCACGGCGC +
Preference number: 4 (lower is better)
Translates to: QALPRAHSSCQGPALPHCLCSLP*EKPPRR
Trigger: GCGCCGTGGTGGTTTCTCCCAAGGAAGAGAACAAAG...GCAGTGTGGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp CCTCCCACACTGCAACTGTCTAGCATATACAAGGCGCCCTGCTGCCGCCCCCTCCTTCCGGTCTGGAGGTaGGTGTGCTGGAGGCAATGG +
Preference number: 4 (lower is better)
Translates to: PPTLQLSSIYKAPCCRPLLPVWR*VCWRQW
Trigger: CCATTGCCTCCAGCACACCCACCTCCAGACCGGAAG...GAGGGGGCGGCAGCAGGGCGCCTTGTATATGCTAGACAGTTGCAGTGTGGGAGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp ACCACAGCAGGCACTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCACATGTAGGAGCTGGTaGTGGACATCCCCGTCATGT +
Preference number: 4 (lower is better)
Translates to: TTAGTAQGTQFMPGPSPPTCRSW*WTSPSC
Trigger: ACATGACGGGGATGTCCACCACCAGCTCCTACATGT...GGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTGCTGTGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp CAGCAGGCACTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCACACACATGTAGGAGCTGGTaGTGGACATCCCCGTCATGT +
Preference number: 4 (lower is better)
Translates to: QQALPRAHSSCQGPALPHTCRSW*WTSPSC
Trigger: ACATGACGGGGATGTCCACCACCAGCTCCTACATGT...GTGTGGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTGCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp CCCAGCCCTCCCACACTGCAACTGTCTAGCATATACAAGGCGCCCTGCTGCCGCTGGGTAGCTGGCTGGTaGCAAACCCAAGCCTGGAGG +
Preference number: 4 (lower is better)
Translates to: PSPPTLQLSSIYKAPCCRWVAGW*QTQAWR
Trigger: CCTCCAGGCTTGGGTTTGCCACCAGCCAGCTACCCA...GCGGCAGCAGGGCGCCTTGTATATGCTAGACAGTTGCAGTGTGGGAGGGCTGGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR TCA 90 bp CCCAGCCCTCCCACACTGCAACTGTCTAGCATATACAAGGCGCCCTGCTGCCGCTGGTTCCCACTGCAGTaGCAGGGTGGTGCAGAGACT +
Preference number: 4 (lower is better)
Translates to: PSPPTLQLSSIYKAPCCRWFPLQ*QGGAET
Trigger: AGTCTCTGCACCACCCTGTCACTGCAGTGGGAACCA...GCGGCAGCAGGGCGCCTTGTATATGCTAGACAGTTGCAGTGTGGGAGGGCTGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR TCA 90 bp ACCACAGCAGGCACTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCTTACTGCGACAGCTATaGTCTCTGGTTCCCACTGCA +
Preference number: 4 (lower is better)
Translates to: TTAGTAQGTQFMPGPSPPLLRQL*SLVPTA
Trigger: TGCAGTGGGAACCAGAGATCATAGCTGTCGCAGTAA...GGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTGCTGTGGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR TCA 90 bp CCCAGCCCTCCCACACTGCAACTGTCTAGCATATACAAGGCGCCCTGCTGCCGCGCTGCTTCTGAGCCTTaGGATGGTTGGGACTGTGGC +
Preference number: 4 (lower is better)
Translates to: PSPPTLQLSSIYKAPCCRAASEP*DGWDCG
Trigger: GCCACAGTCCCAACCATCTCAAGGCTCAGAAGCAGC...GCGGCAGCAGGGCGCCTTGTATATGCTAGACAGTTGCAGTGTGGGAGGGCTGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR GCA 90 bp CAGGCACTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCACACTGCAGTTGTGAGGGTGTGTaGGCTAGGTCCTTCTTATCC +
Preference number: 4 (lower is better)
Translates to: QALPRAHSSCQGPALPHCSCEGV*ARSFLS
Trigger: GGATAAGAAGGACCTAGCGCACACACCCTCACAACT...GCAGTGTGGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR GCA 90 bp CCTCCCACACTGCAACTGTCTAGCATATACAAGGCGCCCTGCTGCCGCCCCCTCGGCTGTTGTGCTTGCTaGTGTTGCTGCTGGGCTGAC +
Preference number: 4 (lower is better)
Translates to: PPTLQLSSIYKAPCCRPLGCCAC*CCCWAD
Trigger: GTCAGCCCAGCAGCAACAGCAGCAAGCACAACAGCC...GAGGGGGCGGCAGCAGGGCGCCTTGTATATGCTAGACAGTTGCAGTGTGGGAGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp CAGGCACTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCACACTGCAGGTCCAGGATTTGGTaGCAGATGTCTTCCAGAACG +
Preference number: 4 (lower is better)
Translates to: QALPRAHSSCQGPALPHCRSRIW*QMSSRT
Trigger: CGTTCTGGAAGACATCTGCCACCAAATCCTGGACCT...GCAGTGTGGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp CCTCCCACACTGCAACTGTCTAGCATATACAAGGCGCCCTGCTGCCGCCCCCTCCCCCTGGGGCACTTGTaGTGTAGGCTGAAGAGATGG +
Preference number: 4 (lower is better)
Translates to: PPTLQLSSIYKAPCCRPLPLGHL*CRLKRW
Trigger: CCATCTCTTCAGCCTACACCACAAGTGCCCCAGGGG...GAGGGGGCGGCAGCAGGGCGCCTTGTATATGCTAGACAGTTGCAGTGTGGGAGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp CCACAGCAGGCACTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCATGCTGGAGGCAATGGTaGGTGAGTAGCCTCAAGTTT +
Preference number: 4 (lower is better)
Translates to: PQQALPRAHSSCQGPALPCWRQW*VSSLKF
Trigger: AAACTTGAGGCTACTCACCCACCATTGCCTCCAGCA...TGGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTGCTGTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp CACAGACGGCAGCGGGGACTGGATGTGATCACACCACAGCAGGCACTGCCCAGGGTGTGCTGGAGGCAATaGTGGGTGAGTAGCCTCAAG +
Preference number: 4 (lower is better)
Translates to: HRRQRGLDVITPQQALPRVCWRQ*WVSSLK
Trigger: CTTGAGGCTACTCACCCACCATTGCCTCCAGCACAC...CCTGGGCAGTGCCTGCTGTGGTGTGATCACATCCAGTCCCCGCTGCCGTCTGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp CCACAGCAGGCACTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCACAACATGGTTTTGTGTaGTCCAGGTTTGCTGACGTG +
Preference number: 4 (lower is better)
Translates to: PQQALPRAHSSCQGPALPQHGFV*SRFADV
Trigger: CACGTCAGCAAACCTGGACCACACAAAACCATGTTG...TGGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTGCTGTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp CAGCAGGCACTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCACACGGGGAATCTGGACTTTaGGGAGATCACTTGTTTCCA +
Preference number: 4 (lower is better)
Translates to: QQALPRAHSSCQGPALPHGESGL*GDHLFP
Trigger: TGGAAACAAGTGATCTCCCCAAAGTCCAGATTCCCC...GTGTGGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp CAGGCACTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCACACTGCGGGGAATCTGGACTTTaGGGAGATCACTTGTTTCCA +
Preference number: 4 (lower is better)
Translates to: QALPRAHSSCQGPALPHCGESGL*GDHLFP
Trigger: TGGAAACAAGTGATCTCCCCAAAGTCCAGATTCCCC...GCAGTGTGGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp CACAGACGGCAGCGGGGACTGGATGTGATCACACCACAGCAGGCACTGCCCAGGGCTGGAGGGGGAATCTaGACTTTGGGGAGATCACTT +
Preference number: 4 (lower is better)
Translates to: HRRQRGLDVITPQQALPRAGGGI*TLGRSL
Trigger: AAGTGATCTCCCCAAAGTCCAGATTCCCCCTCCAGC...CCTGGGCAGTGCCTGCTGTGGTGTGATCACATCCAGTCCCCGCTGCCGTCTGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp AGAGGACAGAGTTACAAGCTAAGTGGGGAGTCACCTCACCTACTAGGGGCCACAGGAGGGTGGCGGGGGTaGTGGCCGATGTGGCAATGG +
Preference number: 4 (lower is better)
Translates to: RGQSYKLSGESPHLLGATGGWRG*WPMWQW
Trigger: CCATTGCCACATCGGCCACCACCCCCGCCACCCTCC...TGTGGCCCCTAGTAGGTGAGGTGACTCCCCACTTAGCTTGTAACTCTGTCCTCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp CCTCCCACACTGCAACTGTCTAGCATATACAAGGCGCCCTGCTGCCGCCCCCTCTGTAGGAGCTGGTGGTaGACATCCCCGTCATGTAGC +
Preference number: 4 (lower is better)
Translates to: PPTLQLSSIYKAPCCRPLCRSWW*TSPSCS
Trigger: GCTACATGACGGGGATGTCCACCACCAGCTCCTACA...GAGGGGGCGGCAGCAGGGCGCCTTGTATATGCTAGACAGTTGCAGTGTGGGAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp CCCAGCCCTCCCACACTGCAACTGTCTAGCATATACAAGGCGCCCTGCTGCCGCCTGACATGTAGGAGCTaGTGGTGGACATCCCCGTCA +
Preference number: 4 (lower is better)
Translates to: PSPPTLQLSSIYKAPCCRLTCRS*WWTSPS
Trigger: TGACGGGGATGTCCACCACCAGCTCCTACATGTCAG...GCGGCAGCAGGGCGCCTTGTATATGCTAGACAGTTGCAGTGTGGGAGGGCTGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR TCA 90 bp CAGCAGGCACTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCACACCTGTTGTTTCCCTTGTaGGTAAAGGTCCAGGATTTG +
Preference number: 4 (lower is better)
Translates to: QQALPRAHSSCQGPALPHLLFPL*VKVQDL
Trigger: CAAATCCTGGACCTTTACTCACAAGGGAAACAACAG...GTGTGGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTGCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR GCA 90 bp CCACAGCAGGCACTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCACGCAAGATACATTACTaGGACAGCTATGATCTCTGG +
Preference number: 4 (lower is better)
Translates to: PQQALPRAHSSCQGPALPRKIHY*DSYDLW
Trigger: CCAGAGATCATAGCTGTCGCAGTAATGTATCTTGCG...TGGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTGCTGTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp CCACAGCAGGCACTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCAATCCCAGTACCAACATaGTTTTGTGTGGTCCAGGTT +
Preference number: 4 (lower is better)
Translates to: PQQALPRAHSSCQGPALPIPVPT*FCVVQV
Trigger: AACCTGGACCACACAAAACCATGTTGGTACTGGGAT...TGGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTGCTGTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp CAGCAGGCACTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCACACATCCCAGTACCAACATaGTTTTGTGTGGTCCAGGTT +
Preference number: 4 (lower is better)
Translates to: QQALPRAHSSCQGPALPHIPVPT*FCVVQV
Trigger: AACCTGGACCACACAAAACCATGTTGGTACTGGGAT...GTGTGGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTGCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp CAGCAGGCACTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCACACACCATCTCCTATACATaGGTTTGGAGGTCCACTCTT +
Preference number: 4 (lower is better)
Translates to: QQALPRAHSSCQGPALPHTISYT*VWRSTL
Trigger: AAGAGTGGACCTCCAAACCCATGTATAGGAGATGGT...GTGTGGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTGCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp CAGCAGGCACTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCACACTTTAGGTGGTGGTGGTaGTTCTGTAGCTTTGTTCTC +
Preference number: 4 (lower is better)
Translates to: QQALPRAHSSCQGPALPHFRWWW*FCSFVL
Trigger: GAGAACAAAGCTACAGAACCACCACCACCACCTAAA...GTGTGGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTGCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp ACCACAGCAGGCACTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCGGGAATTTTAGGTGGTaGTGGTGGTTCTGTAGCTTT +
Preference number: 4 (lower is better)
Translates to: TTAGTAQGTQFMPGPSPPGNFRW*WWFCSF
Trigger: AAAGCTACAGAACCACCACCACCACCTAAAATTCCC...GGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTGCTGTGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp CAGCAGGCACTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCACACGGGAATTTTAGGTGGTaGTGGTGGTTCTGTAGCTTT +
Preference number: 4 (lower is better)
Translates to: QQALPRAHSSCQGPALPHGNFRW*WWFCSF
Trigger: AAAGCTACAGAACCACCACCACCACCTAAAATTCCC...GTGTGGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTGCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp CCACAGAGAGAAGCCACAGAATGGAAGAACAACAGCCAGACTGCAGACAGGAGGTCCCCGTCATGTAGCTaGAGGGTGGCGGGGGTGGTG +
Preference number: 4 (lower is better)
Translates to: PQREATEWKNNSQTADRRSPSCS*RVAGVV
Trigger: CACCACCCCCGCCACCCTCCAGCTACATGACGGGGA...CCTCCTGTCTGCAGTCTGGCTGTTGTTCTTCCATTCTGTGGCTTCTCTCTGTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp CCCAGCCCTCCCACACTGCAACTGTCTAGCATATACAAGGCGCCCTGCTGCCGCCCTCCGTCTTCATCATaGACTGCAGGCTCTGATAGC +
Preference number: 4 (lower is better)
Translates to: PSPPTLQLSSIYKAPCCRPPSSS*TAGSDS
Trigger: GCTATCAGAGCCTGCAGTCCATGATGAAGACGGAGG...GCGGCAGCAGGGCGCCTTGTATATGCTAGACAGTTGCAGTGTGGGAGGGCTGGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp AGAGGACAGAGTTACAAGCTAAGTGGGGAGTCACCTCACCTACTAGGGGCCACAAGGGACTGCATGAGTTaGGGGCAGGCGTGGGGGTGG +
Preference number: 4 (lower is better)
Translates to: RGQSYKLSGESPHLLGATRDCMS*GQAWGW
Trigger: CCACCCCCACGCCTGCCCCCAACTCATGCAGTCCCT...TGTGGCCCCTAGTAGGTGAGGTGACTCCCCACTTAGCTTGTAACTCTGTCCTCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR TCA 90 bp CCCAGCCCTCCCACACTGCAACTGTCTAGCATATACAAGGCGCCCTGCTGCCGCTTACTGCGACAGCTATaGTCTCTGGTTCCCACTGCA +
Preference number: 4 (lower is better)
Translates to: PSPPTLQLSSIYKAPCCRLLRQL*SLVPTA
Trigger: TGCAGTGGGAACCAGAGATCATAGCTGTCGCAGTAA...GCGGCAGCAGGGCGCCTTGTATATGCTAGACAGTTGCAGTGTGGGAGGGCTGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR TCA 90 bp CCCAGCCCTCCCACACTGCAACTGTCTAGCATATACAAGGCGCCCTGCTGCCGCTCAACAGGGACATCTTaGACGAACTGCTCCCACCAT +
Preference number: 4 (lower is better)
Translates to: PSPPTLQLSSIYKAPCCRSTGTS*TNCSHH
Trigger: ATGGTGGGAGCAGTTCGTTCAAGATGTCCCTGTTGA...GCGGCAGCAGGGCGCCTTGTATATGCTAGACAGTTGCAGTGTGGGAGGGCTGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp CACAGACGGCAGCGGGGACTGGATGTGATCACACCACAGCAGGCACTGCCCAGGACTGCAGTGACAGGGTaGTGCAGAGACTGTCATTTA +
Preference number: 4 (lower is better)
Translates to: HRRQRGLDVITPQQALPRTAVTG*CRDCHL
Trigger: TAAATGACAGTCTCTGCACCACCCTGTCACTGCAGT...CCTGGGCAGTGCCTGCTGTGGTGTGATCACATCCAGTCCCCGCTGCCGTCTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp AGAGGACAGAGTTACAAGCTAAGTGGGGAGTCACCTCACCTACTAGGGGCCACAAGGTGGCATACCAGGTaGGGGGATGGGTGGGGGAAC +
Preference number: 4 (lower is better)
Translates to: RGQSYKLSGESPHLLGATRWHTR*GDGWGN
Trigger: GTTCCCCCACCCATCCCCCCACCTGGTATGCCACCT...TGTGGCCCCTAGTAGGTGAGGTGACTCCCCACTTAGCTTGTAACTCTGTCCTCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR TCA 90 bp CCTCCCACACTGCAACTGTCTAGCATATACAAGGCGCCCTGCTGCCGCCCCCTCGCTGCTTTGCATATTTaGGCAGGAACTGGTACGGAT +
Preference number: 4 (lower is better)
Translates to: PPTLQLSSIYKAPCCRPLAALHI*AGTGTD
Trigger: ATCCGTACCAGTTCCTGCTCAAATATGCAAAGCAGC...GAGGGGGCGGCAGCAGGGCGCCTTGTATATGCTAGACAGTTGCAGTGTGGGAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR GCA 90 bp CCACAGCAGGCACTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCATCAAACTTTATGGTCTaGAGTAAGATCCTCTCCAAC +
Preference number: 4 (lower is better)
Translates to: PQQALPRAHSSCQGPALPSNFMV*SKILSN
Trigger: GTTGGAGAGGATCTTACTGCAGACCATAAAGTTTGA...TGGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTGCTGTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR GCA 90 bp ACCACAGCAGGCACTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCTTATCACCTTTGAGCTaGTTTGCATATTTGAGCAGG +
Preference number: 4 (lower is better)
Translates to: TTAGTAQGTQFMPGPSPPLSPLS*FAYLSR
Trigger: CCTGCTCAAATATGCAAAGCAGCTCAAAGGTGATAA...GGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTGCTGTGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp ACCACAGCAGGCACTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCTCCTGTCACGTATCTTaGGAATTGTTTGAAGGAATG +
Preference number: 4 (lower is better)
Translates to: TTAGTAQGTQFMPGPSPPSCHVS*ELFEGM
Trigger: CATTCCTTCAAACAATTCCCAAGATACGTGACAGGA...GGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTGCTGTGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp CAGCAGGCACTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCACACTCCTATACATGGGTTTaGAGGTCCACTCTTGTATTT +
Preference number: 4 (lower is better)
Translates to: QQALPRAHSSCQGPALPHSYTWV*RSTLVF
Trigger: AAATACAAGAGTGGACCTCCAAACCCATGTATAGGA...GTGTGGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTGCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp AGAGGACAGAGTTACAAGCTAAGTGGGGAGTCACCTCACCTACTAGGGGCCACATGCTGCTGTTGCTGCTaGGCTGACTGCTGCGAGTCC +
Preference number: 4 (lower is better)
Translates to: RGQSYKLSGESPHLLGATCCCCC*ADCCES
Trigger: GGACTCGCAGCAGTCAGCCCAGCAGCAACAGCAGCA...TGTGGCCCCTAGTAGGTGAGGTGACTCCCCACTTAGCTTGTAACTCTGTCCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp CAGGCACTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCACACTGCAATTTTAGGTGGTGGTaGTGGTTCTGTAGCTTTGTT +
Preference number: 4 (lower is better)
Translates to: QALPRAHSSCQGPALPHCNFRWW*WFCSFV
Trigger: AACAAAGCTACAGAACCACCACCACCACCTAAAATT...GCAGTGTGGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp ACCACAGCAGGCACTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCAATTTTAGGTGGTGGTaGTGGTTCTGTAGCTTTGTT +
Preference number: 4 (lower is better)
Translates to: TTAGTAQGTQFMPGPSPPNFRWW*WFCSFV
Trigger: AACAAAGCTACAGAACCACCACCACCACCTAAAATT...GGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTGCTGTGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp AGAGGACAGAGTTACAAGCTAAGTGGGGAGTCACCTCACCTACTAGGGGCCACACTGGAGGTGGGTAGCTaGCTGGTGGCAAACCCAAGC +
Preference number: 4 (lower is better)
Translates to: RGQSYKLSGESPHLLGATLEVGS*LVANPS
Trigger: GCTTGGGTTTGCCACCAGCCAGCTACCCACCTCCAG...TGTGGCCCCTAGTAGGTGAGGTGACTCCCCACTTAGCTTGTAACTCTGTCCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR GCA 90 bp CACAGACGGCAGCGGGGACTGGATGTGATCACACCACAGCAGGCACTGCCCAGGAGGAACTGGTACGGATaGTCTACTTGTAAGTCAAAC +
Preference number: 4 (lower is better)
Translates to: HRRQRGLDVITPQQALPRRNWYG*STCKSN
Trigger: GTTTGACTTACAAGTAGAGCATCCGTACCAGTTCCT...CCTGGGCAGTGCCTGCTGTGGTGTGATCACATCCAGTCCCCGCTGCCGTCTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR GCA 90 bp CACAGACGGCAGCGGGGACTGGATGTGATCACACCACAGCAGGCACTGCCCAGGACCTTTGAGCTGCTTTaGATATTTGAGCAGGAACTG +
Preference number: 4 (lower is better)
Translates to: HRRQRGLDVITPQQALPRTFELL*IFEQEL
Trigger: CAGTTCCTGCTCAAATATGCAAAGCAGCTCAAAGGT...CCTGGGCAGTGCCTGCTGTGGTGTGATCACATCCAGTCCCCGCTGCCGTCTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR GCA 90 bp AGAGGACAGAGTTACAAGCTAAGTGGGGAGTCACCTCACCTACTAGGGGCCACATGCTGCTGGGCTGACTaGTGCGAGTCCTTCTGTGGA +
Preference number: 4 (lower is better)
Translates to: RGQSYKLSGESPHLLGATCCWAD*CESFCG
Trigger: TCCACAGAAGGACTCGCAGCAGTCAGCCCAGCAGCA...TGTGGCCCCTAGTAGGTGAGGTGACTCCCCACTTAGCTTGTAACTCTGTCCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp CCACAGAGAGAAGCCACAGAATGGAAGAACAACAGCCAGACTGCAGACAGGAGGGGTACCGGGCCTCAGTaGCTGGATCGAGTCCTTCAA +
Preference number: 4 (lower is better)
Translates to: PQREATEWKNNSQTADRRGTGPQ*LDRVLQ
Trigger: TTGAAGGACTCGATCCAGCCACTGAGGCCCGGTACC...CCTCCTGTCTGCAGTCTGGCTGTTGTTCTTCCATTCTGTGGCTTCTCTCTGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp ACCACAGCAGGCACTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCCCAAACTGGCCGAACTaGACATCATTTAATAAACTA +
Preference number: 4 (lower is better)
Translates to: TTAGTAQGTQFMPGPSPPPNWPN*TSFNKL
Trigger: TAGTTTATTAAATGATGTCCAGTTCGGCCAGTTTGG...GGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTGCTGTGGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp CCTCCCACACTGCAACTGTCTAGCATATACAAGGCGCCCTGCTGCCGCCCCCTCTTTAGGTGGTGGTGGTaGTTCTGTAGCTTTGTTCTC +
Preference number: 4 (lower is better)
Translates to: PPTLQLSSIYKAPCCRPLFRWWW*FCSFVL
Trigger: GAGAACAAAGCTACAGAACCACCACCACCACCTAAA...GAGGGGGCGGCAGCAGGGCGCCTTGTATATGCTAGACAGTTGCAGTGTGGGAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp AGAGGACAGAGTTACAAGCTAAGTGGGGAGTCACCTCACCTACTAGGGGCCACATGGAGGTGGGTGTGCTaGAGGCAATGGTGGGTGAGT +
Preference number: 4 (lower is better)
Translates to: RGQSYKLSGESPHLLGATWRWVC*RQWWVS
Trigger: ACTCACCCACCATTGCCTCCAGCACACCCACCTCCA...TGTGGCCCCTAGTAGGTGAGGTGACTCCCCACTTAGCTTGTAACTCTGTCCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp CCACAGAGAGAAGCCACAGAATGGAAGAACAACAGCCAGACTGCAGACAGGAGGCTTTGTTCTCTTCCTTaGGAGAAACCACCACGGCGC +
Preference number: 4 (lower is better)
Translates to: PQREATEWKNNSQTADRRLCSLP*EKPPRR
Trigger: GCGCCGTGGTGGTTTCTCCCAAGGAAGAGAACAAAG...CCTCCTGTCTGCAGTCTGGCTGTTGTTCTTCCATTCTGTGGCTTCTCTCTGTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR GCA 90 bp CCTCCCACACTGCAACTGTCTAGCATATACAAGGCGCCCTGCTGCCGCCCCCTCCTTGTATTTCAAATTTaGACAAACGTCCCGCAAGAT +
Preference number: 4 (lower is better)
Translates to: PPTLQLSSIYKAPCCRPLLVFQI*TNVPQD
Trigger: ATCTTGCGGGACGTTTGTGCAAATTTGAAATACAAG...GAGGGGGCGGCAGCAGGGCGCCTTGTATATGCTAGACAGTTGCAGTGTGGGAGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp CCACAGAGAGAAGCCACAGAATGGAAGAACAACAGCCAGACTGCAGACAGGAGGAGGTCCAGGATTTGGTaGCAGATGTCTTCCAGAACG +
Preference number: 4 (lower is better)
Translates to: PQREATEWKNNSQTADRRRSRIW*QMSSRT
Trigger: CGTTCTGGAAGACATCTGCCACCAAATCCTGGACCT...CCTCCTGTCTGCAGTCTGGCTGTTGTTCTTCCATTCTGTGGCTTCTCTCTGTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp AGAATGGAAGAACAACAGCCAGACTGCAGACAGGAGGACATGGATACCAAAAGTTGCTGCTGTTGCTGCTaGGCTGACTGCTGCGAGTCC +
Preference number: 4 (lower is better)
Translates to: RMEEQQPDCRQEDMDTKSCCCCC*ADCCES
Trigger: GGACTCGCAGCAGTCAGCCCAGCAGCAACAGCAGCA...ACTTTTGGTATCCATGTCCTCCTGTCTGCAGTCTGGCTGTTGTTCTTCCATTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp TCCTTACTGAAGCTATTAACTGAGCCAATGTGGCTACTTAACATCTTCACTAGTCCACCACGGCGCGCTTaGCCTGTCGGGGAGGACTGG +
Preference number: 4 (lower is better)
Translates to: SLLKLLTEPMWLLNIFTSPPRRA*PVGEDW
Trigger: CCAGTCCTCCCCGACAGGCCAAGCGCGCCGTGGTGG...ACTAGTGAAGATGTTAAGTAGCCACATTGGCTCAGTTAATAGCTTCAGTAAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp CCACAGAGAGAAGCCACAGAATGGAAGAACAACAGCCAGACTGCAGACAGGAGGTGCTGGAGGCAATGGTaGGTGAGTAGCCTCAAGTTT +
Preference number: 4 (lower is better)
Translates to: PQREATEWKNNSQTADRRCWRQW*VSSLKF
Trigger: AAACTTGAGGCTACTCACCCACCATTGCCTCCAGCA...CCTCCTGTCTGCAGTCTGGCTGTTGTTCTTCCATTCTGTGGCTTCTCTCTGTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp TCCTTACTGAAGCTATTAACTGAGCCAATGTGGCTACTTAACATCTTCACTAGTGGCAATGGTGGGGGCTaGTGCACAGGGGCCGGGTGG +
Preference number: 4 (lower is better)
Translates to: SLLKLLTEPMWLLNIFTSGNGGG*CTGAGW
Trigger: CCACCCGGCCCCTGTGCACCAGCCCCCACCATTGCC...ACTAGTGAAGATGTTAAGTAGCCACATTGGCTCAGTTAATAGCTTCAGTAAGGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp AGAATGGAAGAACAACAGCCAGACTGCAGACAGGAGGACATGGATACCAAAAGTGAGGTGGAGGTGGGTTaGGGGGATAGACATGGGGGT +
Preference number: 4 (lower is better)
Translates to: RMEEQQPDCRQEDMDTKSEVEVG*GDRHGG
Trigger: ACCCCCATGTCTATCCCCCCAACCCACCTCCACCTC...ACTTTTGGTATCCATGTCCTCCTGTCTGCAGTCTGGCTGTTGTTCTTCCATTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR TCA 90 bp AGAATGGAAGAACAACAGCCAGACTGCAGACAGGAGGACATGGATACCAAAAGTACTTGTGGTGTAGGCTaGAGAGATGGGGGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: RMEEQQPDCRQEDMDTKSTCGVG*RDGGCC
Trigger: GCAGCAGCCCCCATCTCTTCAGCCTACACCACAAGT...ACTTTTGGTATCCATGTCCTCCTGTCTGCAGTCTGGCTGTTGTTCTTCCATTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp CCACAGAGAGAAGCCACAGAATGGAAGAACAACAGCCAGACTGCAGACAGGAGGGGGTCATCTCCAAACTaGCCGAACTGGACATCATTT +
Preference number: 4 (lower is better)
Translates to: PQREATEWKNNSQTADRRGSSPN*PNWTSF
Trigger: AAATGATGTCCAGTTCGGCCAGTTTGGAGATGACCC...CCTCCTGTCTGCAGTCTGGCTGTTGTTCTTCCATTCTGTGGCTTCTCTCTGTGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp AGAATGGAAGAACAACAGCCAGACTGCAGACAGGAGGACATGGATACCAAAAGTCCCCTGGGGCACTTGTaGTGTAGGCTGAAGAGATGG +
Preference number: 4 (lower is better)
Translates to: RMEEQQPDCRQEDMDTKSPLGHL*CRLKRW
Trigger: CCATCTCTTCAGCCTACACCACAAGTGCCCCAGGGG...ACTTTTGGTATCCATGTCCTCCTGTCTGCAGTCTGGCTGTTGTTCTTCCATTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR TCA 90 bp AGAGGACAGAGTTACAAGCTAAGTGGGGAGTCACCTCACCTACTAGGGGCCACACTGTTGTTTCCCTTGTaGGTAAAGGTCCAGGATTTG +
Preference number: 4 (lower is better)
Translates to: RGQSYKLSGESPHLLGATLLFPL*VKVQDL
Trigger: CAAATCCTGGACCTTTACTCACAAGGGAAACAACAG...TGTGGCCCCTAGTAGGTGAGGTGACTCCCCACTTAGCTTGTAACTCTGTCCTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR GCA 90 bp AGAATGGAAGAACAACAGCCAGACTGCAGACAGGAGGACATGGATACCAAAAGTTTGGGCTGTTGTGCTTaGTGCTGTTGCTGCTGGGCT +
Preference number: 4 (lower is better)
Translates to: RMEEQQPDCRQEDMDTKSLGCCA*CCCCWA
Trigger: AGCCCAGCAGCAACAGCAGCAAGCACAACAGCCCAA...ACTTTTGGTATCCATGTCCTCCTGTCTGCAGTCTGGCTGTTGTTCTTCCATTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp CCACAGAGAGAAGCCACAGAATGGAAGAACAACAGCCAGACTGCAGACAGGAGGACCATCTCCTATACATaGGTTTGGAGGTCCACTCTT +
Preference number: 4 (lower is better)
Translates to: PQREATEWKNNSQTADRRTISYT*VWRSTL
Trigger: AAGAGTGGACCTCCAAACCCATGTATAGGAGATGGT...CCTCCTGTCTGCAGTCTGGCTGTTGTTCTTCCATTCTGTGGCTTCTCTCTGTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp AGAATGGAAGAACAACAGCCAGACTGCAGACAGGAGGACATGGATACCAAAAGTACTGGGCTGAGGGGATaGTTTCTTGGGCTGTTGTGC +
Preference number: 4 (lower is better)
Translates to: RMEEQQPDCRQEDMDTKSTGLRG*FLGLLC
Trigger: GCACAACAGCCCAAGAAACCATCCCCTCAGCCCAGT...ACTTTTGGTATCCATGTCCTCCTGTCTGCAGTCTGGCTGTTGTTCTTCCATTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp AGAATGGAAGAACAACAGCCAGACTGCAGACAGGAGGACATGGATACCAAAAGTGCTGGAGGGGGAATCTaGACTTTGGGGAGATCACTT +
Preference number: 4 (lower is better)
Translates to: RMEEQQPDCRQEDMDTKSAGGGI*TLGRSL
Trigger: AAGTGATCTCCCCAAAGTCCAGATTCCCCCTCCAGC...ACTTTTGGTATCCATGTCCTCCTGTCTGCAGTCTGGCTGTTGTTCTTCCATTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp AGAATGGAAGAACAACAGCCAGACTGCAGACAGGAGGACATGGATACCAAAAGTCCTCCGTCTTCATCATaGACTGCAGGCTCTGATAGC +
Preference number: 4 (lower is better)
Translates to: RMEEQQPDCRQEDMDTKSPPSSS*TAGSDS
Trigger: GCTATCAGAGCCTGCAGTCCATGATGAAGACGGAGG...ACTTTTGGTATCCATGTCCTCCTGTCTGCAGTCTGGCTGTTGTTCTTCCATTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR TCA 90 bp AGAATGGAAGAACAACAGCCAGACTGCAGACAGGAGGACATGGATACCAAAAGTCCAGGTTTGCTGACGTaGCTGAAGGGCTTGAGTTTT +
Preference number: 4 (lower is better)
Translates to: RMEEQQPDCRQEDMDTKSPGLLT*LKGLSF
Trigger: AAAACTCAAGCCCTTCAGTCACGTCAGCAAACCTGG...ACTTTTGGTATCCATGTCCTCCTGTCTGCAGTCTGGCTGTTGTTCTTCCATTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR TCA 90 bp TCCTTACTGAAGCTATTAACTGAGCCAATGTGGCTACTTAACATCTTCACTAGTTGCCCACATCAAAGATaGAGCGAGCCCCCTCTCGGC +
Preference number: 4 (lower is better)
Translates to: SLLKLLTEPMWLLNIFTSCPHQR*SEPPLG
Trigger: GCCGAGAGGGGGCTCGCTTCATCTTTGATGTGGGCA...ACTAGTGAAGATGTTAAGTAGCCACATTGGCTCAGTTAATAGCTTCAGTAAGGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR TCA 90 bp AGAATGGAAGAACAACAGCCAGACTGCAGACAGGAGGACATGGATACCAAAAGTTCAACAGGGACATCTTaGACGAACTGCTCCCACCAT +
Preference number: 4 (lower is better)
Translates to: RMEEQQPDCRQEDMDTKSSTGTS*TNCSHH
Trigger: ATGGTGGGAGCAGTTCGTTCAAGATGTCCCTGTTGA...ACTTTTGGTATCCATGTCCTCCTGTCTGCAGTCTGGCTGTTGTTCTTCCATTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR GCA 90 bp CCACAGAGAGAAGCCACAGAATGGAAGAACAACAGCCAGACTGCAGACAGGAGGTCAAACTTTATGGTCTaGAGTAAGATCCTCTCCAAC +
Preference number: 4 (lower is better)
Translates to: PQREATEWKNNSQTADRRSNFMV*SKILSN
Trigger: GTTGGAGAGGATCTTACTGCAGACCATAAAGTTTGA...CCTCCTGTCTGCAGTCTGGCTGTTGTTCTTCCATTCTGTGGCTTCTCTCTGTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR GCA 90 bp AGAGGACAGAGTTACAAGCTAAGTGGGGAGTCACCTCACCTACTAGGGGCCACATTATCACCTTTGAGCTaGTTTGCATATTTGAGCAGG +
Preference number: 4 (lower is better)
Translates to: RGQSYKLSGESPHLLGATLSPLS*FAYLSR
Trigger: CCTGCTCAAATATGCAAAGCAGCTCAAAGGTGATAA...TGTGGCCCCTAGTAGGTGAGGTGACTCCCCACTTAGCTTGTAACTCTGTCCTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp AGAGGACAGAGTTACAAGCTAAGTGGGGAGTCACCTCACCTACTAGGGGCCACATCCTGTCACGTATCTTaGGAATTGTTTGAAGGAATG +
Preference number: 4 (lower is better)
Translates to: RGQSYKLSGESPHLLGATSCHVS*ELFEGM
Trigger: CATTCCTTCAAACAATTCCCAAGATACGTGACAGGA...TGTGGCCCCTAGTAGGTGAGGTGACTCCCCACTTAGCTTGTAACTCTGTCCTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp TCCTTACTGAAGCTATTAACTGAGCCAATGTGGCTACTTAACATCTTCACTAGTGAGGTGGAGGTGGGTTaGGGGGATAGACATGGGGGT +
Preference number: 4 (lower is better)
Translates to: SLLKLLTEPMWLLNIFTSEVEVG*GDRHGG
Trigger: ACCCCCATGTCTATCCCCCCAACCCACCTCCACCTC...ACTAGTGAAGATGTTAAGTAGCCACATTGGCTCAGTTAATAGCTTCAGTAAGGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp AGAATGGAAGAACAACAGCCAGACTGCAGACAGGAGGACATGGATACCAAAAGTACTGCAGTGACAGGGTaGTGCAGAGACTGTCATTTA +
Preference number: 4 (lower is better)
Translates to: RMEEQQPDCRQEDMDTKSTAVTG*CRDCHL
Trigger: TAAATGACAGTCTCTGCACCACCCTGTCACTGCAGT...ACTTTTGGTATCCATGTCCTCCTGTCTGCAGTCTGGCTGTTGTTCTTCCATTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp TCCTTACTGAAGCTATTAACTGAGCCAATGTGGCTACTTAACATCTTCACTAGTCTGACATGTAGGAGCTaGTGGTGGACATCCCCGTCA +
Preference number: 4 (lower is better)
Translates to: SLLKLLTEPMWLLNIFTSLTCRS*WWTSPS
Trigger: TGACGGGGATGTCCACCACCAGCTCCTACATGTCAG...ACTAGTGAAGATGTTAAGTAGCCACATTGGCTCAGTTAATAGCTTCAGTAAGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR GCA 90 bp AGAATGGAAGAACAACAGCCAGACTGCAGACAGGAGGACATGGATACCAAAAGTACCTTTGAGCTGCTTTaGATATTTGAGCAGGAACTG +
Preference number: 4 (lower is better)
Translates to: RMEEQQPDCRQEDMDTKSTFELL*IFEQEL
Trigger: CAGTTCCTGCTCAAATATGCAAAGCAGCTCAAAGGT...ACTTTTGGTATCCATGTCCTCCTGTCTGCAGTCTGGCTGTTGTTCTTCCATTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR TCA 90 bp TCCTTACTGAAGCTATTAACTGAGCCAATGTGGCTACTTAACATCTTCACTAGTCCAGGTTTGCTGACGTaGCTGAAGGGCTTGAGTTTT +
Preference number: 4 (lower is better)
Translates to: SLLKLLTEPMWLLNIFTSPGLLT*LKGLSF
Trigger: AAAACTCAAGCCCTTCAGTCACGTCAGCAAACCTGG...ACTAGTGAAGATGTTAAGTAGCCACATTGGCTCAGTTAATAGCTTCAGTAAGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR GCA 90 bp TCCTTACTGAAGCTATTAACTGAGCCAATGTGGCTACTTAACATCTTCACTAGTAGTTGTGAGGGTGTGTaGGCTAGGTCCTTCTTATCC +
Preference number: 4 (lower is better)
Translates to: SLLKLLTEPMWLLNIFTSSCEGV*ARSFLS
Trigger: GGATAAGAAGGACCTAGCGCACACACCCTCACAACT...ACTAGTGAAGATGTTAAGTAGCCACATTGGCTCAGTTAATAGCTTCAGTAAGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp AGAATGGAAGAACAACAGCCAGACTGCAGACAGGAGGACATGGATACCAAAAGTTCCTATACATGGGTTTaGAGGTCCACTCTTGTATTT +
Preference number: 4 (lower is better)
Translates to: RMEEQQPDCRQEDMDTKSSYTWV*RSTLVF
Trigger: AAATACAAGAGTGGACCTCCAAACCCATGTATAGGA...ACTTTTGGTATCCATGTCCTCCTGTCTGCAGTCTGGCTGTTGTTCTTCCATTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR TCA 90 bp TCCTTACTGAAGCTATTAACTGAGCCAATGTGGCTACTTAACATCTTCACTAGTTCCTCTCCAACACCATaGCTTCTTCCTTTGGGTCAT +
Preference number: 4 (lower is better)
Translates to: SLLKLLTEPMWLLNIFTSSSPTP*LLPLGH
Trigger: ATGACCCAAAGGAAGAAGTCATGGTGTTGGAGAGGA...ACTAGTGAAGATGTTAAGTAGCCACATTGGCTCAGTTAATAGCTTCAGTAAGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp TCCTTACTGAAGCTATTAACTGAGCCAATGTGGCTACTTAACATCTTCACTAGTCAACATGGTTTTGTGTaGTCCAGGTTTGCTGACGTG +
Preference number: 4 (lower is better)
Translates to: SLLKLLTEPMWLLNIFTSQHGFV*SRFADV
Trigger: CACGTCAGCAAACCTGGACCACACAAAACCATGTTG...ACTAGTGAAGATGTTAAGTAGCCACATTGGCTCAGTTAATAGCTTCAGTAAGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp AGAATGGAAGAACAACAGCCAGACTGCAGACAGGAGGACATGGATACCAAAAGTCCAAACTGGCCGAACTaGACATCATTTAATAAACTA +
Preference number: 4 (lower is better)
Translates to: RMEEQQPDCRQEDMDTKSPNWPN*TSFNKL
Trigger: TAGTTTATTAAATGATGTCCAGTTCGGCCAGTTTGG...ACTTTTGGTATCCATGTCCTCCTGTCTGCAGTCTGGCTGTTGTTCTTCCATTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CCA 90 bp TCCTTACTGAAGCTATTAACTGAGCCAATGTGGCTACTTAACATCTTCACTAGTGGGTCATCTCCAAACTaGCCGAACTGGACATCATTT +
Preference number: 4 (lower is better)
Translates to: SLLKLLTEPMWLLNIFTSGSSPN*PNWTSF
Trigger: AAATGATGTCCAGTTCGGCCAGTTTGGAGATGACCC...ACTAGTGAAGATGTTAAGTAGCCACATTGGCTCAGTTAATAGCTTCAGTAAGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR GCA 90 bp TCCTTACTGAAGCTATTAACTGAGCCAATGTGGCTACTTAACATCTTCACTAGTCTTGTATTTCAAATTTaGACAAACGTCCCGCAAGAT +
Preference number: 4 (lower is better)
Translates to: SLLKLLTEPMWLLNIFTSLVFQI*TNVPQD
Trigger: ATCTTGCGGGACGTTTGTGCAAATTTGAAATACAAG...ACTAGTGAAGATGTTAAGTAGCCACATTGGCTCAGTTAATAGCTTCAGTAAGGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CAA 90 bp CAGGCACTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCACACTGCACCACCACGGCGCGCTaGGCCTGTCGGGGAGGACTG +
Preference number: 5 (lower is better)
Translates to: QALPRAHSSCQGPALPHCTTTAR*ACRGGL
Trigger: CAGTCCTCCCCGACAGGCCAAGCGCGCCGTGGTGGT...GCAGTGTGGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CAA 90 bp CAGCAGGCACTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCACACTGGCCCCTGGGGCACTaGTGGTGTAGGCTGAAGAGA +
Preference number: 5 (lower is better)
Translates to: QQALPRAHSSCQGPALPHWPLGH*WCRLKR
Trigger: TCTCTTCAGCCTACACCACAAGTGCCCCAGGGGCCA...GTGTGGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTGCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CAA 90 bp ACCACAGCAGGCACTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCTGGCCCCTGGGGCACTaGTGGTGTAGGCTGAAGAGA +
Preference number: 5 (lower is better)
Translates to: TTAGTAQGTQFMPGPSPPWPLGH*WCRLKR
Trigger: TCTCTTCAGCCTACACCACAAGTGCCCCAGGGGCCA...GGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTGCTGTGGT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS CCA 90 bp ACTGCAGGCTCTGATAGCCCTCTCCTGACATGTAGGAGCTGGTGGTaGACATCCCCGTCATGTAGCTGGAGGGTGGCGGGGGTGGTGGCC +
Preference number: 5 (lower is better)
Translates to: TAGSDSPLLTCRSWW*TSPSCSWRVAGVVA
Trigger: GGCCACCACCCCCGCCACCCTCCAGCTACATGACGGGGATGTCCACCACCAGCTCCTACATGTCAGGAGAGGGCTATCAGAGCCTGCAGT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CAA 90 bp CAGCAGGCACTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCACACGCTTTGTTCTCTTCCTaGGGAGAAACCACCACGGCG +
Preference number: 5 (lower is better)
Translates to: QQALPRAHSSCQGPALPHALFSS*GETTTA
Trigger: CGCCGTGGTGGTTTCTCCCAAGGAAGAGAACAAAGC...GTGTGGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTGCTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS TCA 90 bp GACTGCTGCGAGTCCTTCTGTGGAGGCTGGGCTGCTTCTGAGCCTTaGGATGGTTGGGACTGTGGCCCCTGGGGCACTTGTGGTGTAGGC +
Preference number: 5 (lower is better)
Translates to: DCCESFCGGWAASEP*DGWDCGPWGTCGVG
Trigger: GCCTACACCACAAGTGCCCCAGGGGCCACAGTCCCAACCATCTCAAGGCTCAGAAGCAGCCCAGCCTCCACAGAAGGACTCGCAGCAGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS CCA 90 bp TGGACTGCAGGCTCTGATAGCCCTCTCCTGACATGTAGGAGCTGGTaGTGGACATCCCCGTCATGTAGCTGGAGGGTGGCGGGGGTGGTG +
Preference number: 5 (lower is better)
Translates to: WTAGSDSPLLTCRSW*WTSPSCSWRVAGVV
Trigger: CACCACCCCCGCCACCCTCCAGCTACATGACGGGGATGTCCACCACCAGCTCCTACATGTCAGGAGAGGGCTATCAGAGCCTGCAGTCCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS CCA 90 bp AGGCTGGGGGCAGGGCACCATAGGAGGGGCCCTCCGTCTTCATCATaGACTGCAGGCTCTGATAGCCCTCTCCTGACATGTAGGAGCTGG +
Preference number: 5 (lower is better)
Translates to: RLGAGHHRRGPPSSS*TAGSDSPLLTCRSW
Trigger: CCAGCTCCTACATGTCAGGAGAGGGCTATCAGAGCCTGCAGTCCATGATGAAGACGGAGGGCCCCTCCTATGGTGCCCTGCCCCCAGCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CAA 90 bp CAGCAGGCACTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCACACGTCAACAGGGACATCTaGAACGAACTGCTCCCACCA +
Preference number: 5 (lower is better)
Translates to: QQALPRAHSSCQGPALPHVNRDI*NELLPP
Trigger: TGGTGGGAGCAGTTCGTTCAAGATGTCCCTGTTGAC...GTGTGGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTGCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS CCA 90 bp TCATGGACTGCAGGCTCTGATAGCCCTCTCCTGACATGTAGGAGCTaGTGGTGGACATCCCCGTCATGTAGCTGGAGGGTGGCGGGGGTG +
Preference number: 5 (lower is better)
Translates to: SWTAGSDSPLLTCRS*WWTSPSCSWRVAGV
Trigger: CACCCCCGCCACCCTCCAGCTACATGACGGGGATGTCCACCACCAGCTCCTACATGTCAGGAGAGGGCTATCAGAGCCTGCAGTCCATGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CAA 90 bp CAGCAGGCACTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCACACGTAAAGGTCCAGGATTaGGTGGCAGATGTCTTCCAG +
Preference number: 5 (lower is better)
Translates to: QQALPRAHSSCQGPALPHVKVQD*VADVFQ
Trigger: CTGGAAGACATCTGCCACCAAATCCTGGACCTTTAC...GTGTGGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTGCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS TCA 90 bp CCAGGGTGTCATAGTGTAACCCCAAACGTGTGCCCACATCAAAGATaGAGCGAGCCCCCTCTCGGCGGTACCGGGCCTCAGTGGCTGGAT +
Preference number: 5 (lower is better)
Translates to: PGCHSVTPNVCPHQR*SEPPLGGTGPQWLD
Trigger: ATCCAGCCACTGAGGCCCGGTACCGCCGAGAGGGGGCTCGCTTCATCTTTGATGTGGGCACACGTTTGGGGTTACACTATGACACCCTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CAA 90 bp CCACAGCAGGCACTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCAAGTACCAACATGGTTTaGTGTGGTCCAGGTTTGCTG +
Preference number: 5 (lower is better)
Translates to: PQQALPRAHSSCQGPALPSTNMV*CGPGLL
Trigger: CAGCAAACCTGGACCACACAAAACCATGTTGGTACT...TGGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTGCTGTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CAA 90 bp CAGGCACTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCACACTGCAGCTGCTTTGCATATTaGAGCAGGAACTGGTACGGA +
Preference number: 5 (lower is better)
Translates to: QALPRAHSSCQGPALPHCSCFAY*SRNWYG
Trigger: TCCGTACCAGTTCCTGCTCAAATATGCAAAGCAGCT...GCAGTGTGGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CAA 90 bp CCACAGCAGGCACTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCAGGTGGTTCTGTAGCTTaGTTCTCTTCCTTGGGAGAA +
Preference number: 5 (lower is better)
Translates to: PQQALPRAHSSCQGPALPGGSVA*FSSLGE
Trigger: TTCTCCCAAGGAAGAGAACAAAGCTACAGAACCACC...TGGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTGCTGTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CAA 90 bp CACAGACGGCAGCGGGGACTGGATGTGATCACACCACAGCAGGCACTGCCCAGGGGGGGAATCTGGACTTaGGGGAGATCACTTGTTTCC +
Preference number: 5 (lower is better)
Translates to: HRRQRGLDVITPQQALPRGGIWT*GRSLVS
Trigger: GGAAACAAGTGATCTCCCCAAAGTCCAGATTCCCCC...CCTGGGCAGTGCCTGCTGTGGTGTGATCACATCCAGTCCCCGCTGCCGTCTGTG
60% GC, longest homopolymer 7 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS CCA 90 bp GAGGGGAGGCTTCCGGTCTGGAGGTGGGTGTGCTGGAGGCAATGGTaGGTGAGTAGCCTCAAGTTTGGGAATTTTAGGTGGTGGTGGTGG +
Preference number: 5 (lower is better)
Translates to: EGRLPVWRWVCWRQW*VSSLKFGNFRWWWW
Trigger: CCACCACCACCACCTAAAATTCCCAAACTTGAGGCTACTCACCCACCATTGCCTCCAGCACACCCACCTCCAGACCGGAAGCCTCCCCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CAA 90 bp CAGGCACTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCACACTGCCTCCTATACATGGGTTaGGAGGTCCACTCTTGTATT +
Preference number: 5 (lower is better)
Translates to: QALPRAHSSCQGPALPHCLLYMG*EVHSCI
Trigger: AATACAAGAGTGGACCTCCAAACCCATGTATAGGAG...GCAGTGTGGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CAA 90 bp CCCAGCCCTCCCACACTGCAACTGTCTAGCATATACAAGGCGCCCTGCTGCCGCTTTCCACAGGACCAGTaGCTTCAGCCTCACCTAAGG +
Preference number: 5 (lower is better)
Translates to: PSPPTLQLSSIYKAPCCRFPQDQ*LQPHLR
Trigger: CCTTAGGTGAGGCTGAAGCAACTGGTCCTGTGGAAA...GCGGCAGCAGGGCGCCTTGTATATGCTAGACAGTTGCAGTGTGGGAGGGCTGGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CAA 90 bp CCTCCCACACTGCAACTGTCTAGCATATACAAGGCGCCCTGCTGCCGCCCCCTCGGGGGAATCTGGACTTaGGGGAGATCACTTGTTTCC +
Preference number: 5 (lower is better)
Translates to: PPTLQLSSIYKAPCCRPLGGIWT*GRSLVS
Trigger: GGAAACAAGTGATCTCCCCAAAGTCCAGATTCCCCC...GAGGGGGCGGCAGCAGGGCGCCTTGTATATGCTAGACAGTTGCAGTGTGGGAGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS TCA 90 bp GCCCTCCGTCTTCATCATGGACTGCAGGCTCTGATAGCCCTCTCCTaGCATGTAGGAGCTGGTGGTGGACATCCCCGTCATGTAGCTGGA +
Preference number: 5 (lower is better)
Translates to: ALRLHHGLQALIALS*HVGAGGGHPRHVAG
Trigger: TCCAGCTACATGACGGGGATGTCCACCACCAGCTCCTACATGTCAGGAGAGGGCTATCAGAGCCTGCAGTCCATGATGAAGACGGAGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CAA 90 bp CACAGACGGCAGCGGGGACTGGATGTGATCACACCACAGCAGGCACTGCCCAGGAGTACCAACATGGTTTaGTGTGGTCCAGGTTTGCTG +
Preference number: 5 (lower is better)
Translates to: HRRQRGLDVITPQQALPRSTNMV*CGPGLL
Trigger: CAGCAAACCTGGACCACACAAAACCATGTTGGTACT...CCTGGGCAGTGCCTGCTGTGGTGTGATCACATCCAGTCCCCGCTGCCGTCTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CAA 90 bp CAGGCACTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCACACTGCCACGTATCTTGGGAATaGTTTGAAGGAATGGAACAT +
Preference number: 5 (lower is better)
Translates to: QALPRAHSSCQGPALPHCHVSWE*FEGMEH
Trigger: ATGTTCCATTCCTTCAAACAATTCCCAAGATACGTG...GCAGTGTGGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CAA 90 bp CAGGCACTGCCCAGGGCACACAGTTCATGCCAGGGCCCAGCCCTCCCACACTGCTCTTGTATTTCAAATTaGCACAAACGTCCCGCAAGA +
Preference number: 5 (lower is better)
Translates to: QALPRAHSSCQGPALPHCSCISN*HKRPAR
Trigger: TCTTGCGGGACGTTTGTGCAAATTTGAAATACAAGA...GCAGTGTGGGAGGGCTGGGCCCTGGCATGAACTGTGTGCCCTGGGCAGTGCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CAA 90 bp AGAATGGAAGAACAACAGCCAGACTGCAGACAGGAGGACATGGATACCAAAAGTGAGGGACTGCATGAGTaGGGGGCAGGCGTGGGGGTG +
Preference number: 5 (lower is better)
Translates to: RMEEQQPDCRQEDMDTKSEGLHE*GAGVGV
Trigger: CACCCCCACGCCTGCCCCCAACTCATGCAGTCCCTC...ACTTTTGGTATCCATGTCCTCCTGTCTGCAGTCTGGCTGTTGTTCTTCCATTCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CAA 90 bp AGAGGACAGAGTTACAAGCTAAGTGGGGAGTCACCTCACCTACTAGGGGCCACAGCTTTGTTCTCTTCCTaGGGAGAAACCACCACGGCG +
Preference number: 5 (lower is better)
Translates to: RGQSYKLSGESPHLLGATALFSS*GETTTA
Trigger: CGCCGTGGTGGTTTCTCCCAAGGAAGAGAACAAAGC...TGTGGCCCCTAGTAGGTGAGGTGACTCCCCACTTAGCTTGTAACTCTGTCCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CAA 90 bp CCTCCCACACTGCAACTGTCTAGCATATACAAGGCGCCCTGCTGCCGCCCCCTCCACGTATCTTGGGAATaGTTTGAAGGAATGGAACAT +
Preference number: 5 (lower is better)
Translates to: PPTLQLSSIYKAPCCRPLHVSWE*FEGMEH
Trigger: ATGTTCCATTCCTTCAAACAATTCCCAAGATACGTG...GAGGGGGCGGCAGCAGGGCGCCTTGTATATGCTAGACAGTTGCAGTGTGGGAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CAA 90 bp AGAGGACAGAGTTACAAGCTAAGTGGGGAGTCACCTCACCTACTAGGGGCCACAGTCAACAGGGACATCTaGAACGAACTGCTCCCACCA +
Preference number: 5 (lower is better)
Translates to: RGQSYKLSGESPHLLGATVNRDI*NELLPP
Trigger: TGGTGGGAGCAGTTCGTTCAAGATGTCCCTGTTGAC...TGTGGCCCCTAGTAGGTGAGGTGACTCCCCACTTAGCTTGTAACTCTGTCCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CAA 90 bp CCACAGAGAGAAGCCACAGAATGGAAGAACAACAGCCAGACTGCAGACAGGAGGTGGTTTCTTGGGCTGTaGTGCTTGCTGCTGTTGCTG +
Preference number: 5 (lower is better)
Translates to: PQREATEWKNNSQTADRRWFLGL*CLLLLL
Trigger: CAGCAACAGCAGCAAGCACAACAGCCCAAGAAACCA...CCTCCTGTCTGCAGTCTGGCTGTTGTTCTTCCATTCTGTGGCTTCTCTCTGTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CAA 90 bp CCTCCCACACTGCAACTGTCTAGCATATACAAGGCGCCCTGCTGCCGCCCCCTCTTTGGAGGTCCACTCTaGTATTTCAAATTTGCACAA +
Preference number: 5 (lower is better)
Translates to: PPTLQLSSIYKAPCCRPLFGGPL*YFKFAQ
Trigger: TTGTGCAAATTTGAAATACAAGAGTGGACCTCCAAA...GAGGGGGCGGCAGCAGGGCGCCTTGTATATGCTAGACAGTTGCAGTGTGGGAGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CAA 90 bp TCCTTACTGAAGCTATTAACTGAGCCAATGTGGCTACTTAACATCTTCACTAGTACCACCACGGCGCGCTaGGCCTGTCGGGGAGGACTG +
Preference number: 5 (lower is better)
Translates to: SLLKLLTEPMWLLNIFTSTTTAR*ACRGGL
Trigger: CAGTCCTCCCCGACAGGCCAAGCGCGCCGTGGTGGT...ACTAGTGAAGATGTTAAGTAGCCACATTGGCTCAGTTAATAGCTTCAGTAAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CAA 90 bp AGAGGACAGAGTTACAAGCTAAGTGGGGAGTCACCTCACCTACTAGGGGCCACACTTTGGGGAGATCACTaGTTTCCACAGGACCAGTTG +
Preference number: 5 (lower is better)
Translates to: RGQSYKLSGESPHLLGATLWGDH*FPQDQL
Trigger: CAACTGGTCCTGTGGAAACAAGTGATCTCCCCAAAG...TGTGGCCCCTAGTAGGTGAGGTGACTCCCCACTTAGCTTGTAACTCTGTCCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS TCA 90 bp CTGCAGCTGATGAGGGGTGTGATGAGGCATCTGTTGTTTCCCTTGTaGGTAAAGGTCCAGGATTTGGTGGCAGATGTCTTCCAGAACGTC +
Preference number: 5 (lower is better)
Translates to: LQLMRGVMRHLLFPL*VKVQDLVADVFQNV
Trigger: GACGTTCTGGAAGACATCTGCCACCAAATCCTGGACCTTTACTCACAAGGGAAACAACAGATGCCTCATCACACCCCTCATCAGCTGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CAA 90 bp TCCTTACTGAAGCTATTAACTGAGCCAATGTGGCTACTTAACATCTTCACTAGTGAGGGACTGCATGAGTaGGGGGCAGGCGTGGGGGTG +
Preference number: 5 (lower is better)
Translates to: SLLKLLTEPMWLLNIFTSEGLHE*GAGVGV
Trigger: CACCCCCACGCCTGCCCCCAACTCATGCAGTCCCTC...ACTAGTGAAGATGTTAAGTAGCCACATTGGCTCAGTTAATAGCTTCAGTAAGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS TCA 90 bp CAAATTTGCACAAACGTCCCGCAAGATACATTACTGCGACAGCTATaGTCTCTGGTTCCCACTGCAGTGACAGGGTGGTGCAGAGACTGT +
Preference number: 5 (lower is better)
Translates to: QICTNVPQDTLLRQL*SLVPTAVTGWCRDC
Trigger: ACAGTCTCTGCACCACCCTGTCACTGCAGTGGGAACCAGAGATCATAGCTGTCGCAGTAATGTATCTTGCGGGACGTTTGTGCAAATTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CAA 90 bp AGAGGACAGAGTTACAAGCTAAGTGGGGAGTCACCTCACCTACTAGGGGCCACACTCCTATACATGGGTTaGGAGGTCCACTCTTGTATT +
Preference number: 5 (lower is better)
Translates to: RGQSYKLSGESPHLLGATLLYMG*EVHSCI
Trigger: AATACAAGAGTGGACCTCCAAACCCATGTATAGGAG...TGTGGCCCCTAGTAGGTGAGGTGACTCCCCACTTAGCTTGTAACTCTGTCCTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS GCA 90 bp CCCGCAAGATACATTACTGCGACAGCTATGATCTCTGGTTCCCACTaGAGTGACAGGGTGGTGCAGAGACTGTCATTTACAAATGTCCAT +
Preference number: 5 (lower is better)
Translates to: PARYITATAMISGSH*SDRVVQRLSFTNVH
Trigger: ATGGACATTTGTAAATGACAGTCTCTGCACCACCCTGTCACTGCAGTGGGAACCAGAGATCATAGCTGTCGCAGTAATGTATCTTGCGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CAA 90 bp AGAATGGAAGAACAACAGCCAGACTGCAGACAGGAGGACATGGATACCAAAAGTTGGTTTCTTGGGCTGTaGTGCTTGCTGCTGTTGCTG +
Preference number: 5 (lower is better)
Translates to: RMEEQQPDCRQEDMDTKSWFLGL*CLLLLL
Trigger: CAGCAACAGCAGCAAGCACAACAGCCCAAGAAACCA...ACTTTTGGTATCCATGTCCTCCTGTCTGCAGTCTGGCTGTTGTTCTTCCATTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CAA 90 bp AGAATGGAAGAACAACAGCCAGACTGCAGACAGGAGGACATGGATACCAAAAGTTTTCCACAGGACCAGTaGCTTCAGCCTCACCTAAGG +
Preference number: 5 (lower is better)
Translates to: RMEEQQPDCRQEDMDTKSFPQDQ*LQPHLR
Trigger: CCTTAGGTGAGGCTGAAGCAACTGGTCCTGTGGAAA...ACTTTTGGTATCCATGTCCTCCTGTCTGCAGTCTGGCTGTTGTTCTTCCATTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CAA 90 bp CCACAGAGAGAAGCCACAGAATGGAAGAACAACAGCCAGACTGCAGACAGGAGGTCTTGTATTTCAAATTaGCACAAACGTCCCGCAAGA +
Preference number: 5 (lower is better)
Translates to: PQREATEWKNNSQTADRRSCISN*HKRPAR
Trigger: TCTTGCGGGACGTTTGTGCAAATTTGAAATACAAGA...CCTCCTGTCTGCAGTCTGGCTGTTGTTCTTCCATTCTGTGGCTTCTCTCTGTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CAA 90 bp AGAGGACAGAGTTACAAGCTAAGTGGGGAGTCACCTCACCTACTAGGGGCCACATTTGGAGGTCCACTCTaGTATTTCAAATTTGCACAA +
Preference number: 5 (lower is better)
Translates to: RGQSYKLSGESPHLLGATFGGPL*YFKFAQ
Trigger: TTGTGCAAATTTGAAATACAAGAGTGGACCTCCAAA...TGTGGCCCCTAGTAGGTGAGGTGACTCCCCACTTAGCTTGTAACTCTGTCCTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS GCA 90 bp AGGAACTGGTACGGATGCTCTACTTGTAAGTCAAACTTTATGGTCTaGAGTAAGATCCTCTCCAACACCATGACTTCTTCCTTTGGGTCA +
Preference number: 5 (lower is better)
Translates to: RNWYGCSTCKSNFMV*SKILSNTMTSSFGS
Trigger: TGACCCAAAGGAAGAAGTCATGGTGTTGGAGAGGATCTTACTGCAGACCATAAAGTTTGACTTACAAGTAGAGCATCCGTACCAGTTCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS CCA 90 bp ATCCTCTCCAACACCATGACTTCTTCCTTTGGGTCATCTCCAAACTaGCCGAACTGGACATCATTTAATAAACTACGAGCCGTTTTGATG +
Preference number: 5 (lower is better)
Translates to: ILSNTMTSSFGSSPN*PNWTSFNKLRAVLM
Trigger: CATCAAAACGGCTCGTAGTTTATTAAATGATGTCCAGTTCGGCCAGTTTGGAGATGACCCAAAGGAAGAAGTCATGGTGTTGGAGAGGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS GCA 90 bp TCACCTTTGAGCTGCTTTGCATATTTGAGCAGGAACTGGTACGGATaGTCTACTTGTAAGTCAAACTTTATGGTCTGCAGTAAGATCCTC +
Preference number: 5 (lower is better)
Translates to: SPLSCFAYLSRNWYG*STCKSNFMVCSKIL
Trigger: GAGGATCTTACTGCAGACCATAAAGTTTGACTTACAAGTAGAGCATCCGTACCAGTTCCTGCTCAAATATGCAAAGCAGCTCAAAGGTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CAA 90 bp TCCTTACTGAAGCTATTAACTGAGCCAATGTGGCTACTTAACATCTTCACTAGTCTTTGGGGAGATCACTaGTTTCCACAGGACCAGTTG +
Preference number: 5 (lower is better)
Translates to: SLLKLLTEPMWLLNIFTSLWGDH*FPQDQL
Trigger: CAACTGGTCCTGTGGAAACAAGTGATCTCCCCAAAG...ACTAGTGAAGATGTTAAGTAGCCACATTGGCTCAGTTAATAGCTTCAGTAAGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS-3UTR CAA 90 bp TCCTTACTGAAGCTATTAACTGAGCCAATGTGGCTACTTAACATCTTCACTAGTGGTGGTTCTGTAGCTTaGTTCTCTTCCTTGGGAGAA +
Preference number: 5 (lower is better)
Translates to: SLLKLLTEPMWLLNIFTSGGSVA*FSSLGE
Trigger: TTCTCCCAAGGAAGAGAACAAAGCTACAGAACCACC...ACTAGTGAAGATGTTAAGTAGCCACATTGGCTCAGTTAATAGCTTCAGTAAGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS CCA 90 bp AACACCATGACTTCTTCCTTTGGGTCATCTCCAAACTGGCCGAACTaGACATCATTTAATAAACTACGAGCCGTTTTGATGATATCTTTA +
Preference number: 5 (lower is better)
Translates to: NTMTSSFGSSPNWPN*TSFNKLRAVLMISL
Trigger: TAAAGATATCATCAAAACGGCTCGTAGTTTATTAAATGATGTCCAGTTCGGCCAGTTTGGAGATGACCCAAAGGAAGAAGTCATGGTGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS CCA 90 bp TTGTTTTTATCACCTTTGAGCTGCTTTGCATATTTGAGCAGGAACTaGTACGGATGCTCTACTTGTAAGTCAAACTTTATGGTCTGCAGT +
Preference number: 5 (lower is better)
Translates to: LFLSPLSCFAYLSRN*YGCSTCKSNFMVCS
Trigger: ACTGCAGACCATAAAGTTTGACTTACAAGTAGAGCATCCGTACCAGTTCCTGCTCAAATATGCAAAGCAGCTCAAAGGTGATAAAAACAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS CCA 72 bp TGTAGGAGCTGGTGGTGGACATCCCCGTCATGTAGCTaGAGGGTGGCGGGGGTGGTGGCCGATGTGGCAATG +
Preference number: 6 (lower is better)
Translates to: CRSWWWTSPSCS*RVAGVVADVAM
Trigger: CATTGCCACATCGGCCACCACCCCCGCCACCCTCCAGCTACATGACGGGGATGTCCACCACCAGCTCCTACA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS TCA 72 bp GAGTCCTTCTGTGGAGGCTGGGCTGCTTCTGAGCCTTaGGATGGTTGGGACTGTGGCCCCTGGGGCACTTGT +
Preference number: 6 (lower is better)
Translates to: ESFCGGWAASEP*DGWDCGPWGTC
Trigger: ACAAGTGCCCCAGGGGCCACAGTCCCAACCATCTCAAGGCTCAGAAGCAGCCCAGCCTCCACAGAAGGACTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS CCA 72 bp TCTGATAGCCCTCTCCTGACATGTAGGAGCTGGTGGTaGACATCCCCGTCATGTAGCTGGAGGGTGGCGGGG +
Preference number: 6 (lower is better)
Translates to: SDSPLLTCRSWW*TSPSCSWRVAG
Trigger: CCCCGCCACCCTCCAGCTACATGACGGGGATGTCCACCACCAGCTCCTACATGTCAGGAGAGGGCTATCAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS CCA 72 bp GGCTCTGATAGCCCTCTCCTGACATGTAGGAGCTGGTaGTGGACATCCCCGTCATGTAGCTGGAGGGTGGCG +
Preference number: 6 (lower is better)
Translates to: GSDSPLLTCRSW*WTSPSCSWRVA
Trigger: CGCCACCCTCCAGCTACATGACGGGGATGTCCACCACCAGCTCCTACATGTCAGGAGAGGGCTATCAGAGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS TCA 72 bp CATAGTGTAACCCCAAACGTGTGCCCACATCAAAGATaGAGCGAGCCCCCTCTCGGCGGTACCGGGCCTCAG +
Preference number: 6 (lower is better)
Translates to: HSVTPNVCPHQR*SEPPLGGTGPQ
Trigger: CTGAGGCCCGGTACCGCCGAGAGGGGGCTCGCTTCATCTTTGATGTGGGCACACGTTTGGGGTTACACTATG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS CCA 72 bp GCAGGCTCTGATAGCCCTCTCCTGACATGTAGGAGCTaGTGGTGGACATCCCCGTCATGTAGCTGGAGGGTG +
Preference number: 6 (lower is better)
Translates to: AGSDSPLLTCRS*WWTSPSCSWRV
Trigger: CACCCTCCAGCTACATGACGGGGATGTCCACCACCAGCTCCTACATGTCAGGAGAGGGCTATCAGAGCCTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS CCA 72 bp GCAGGGCACCATAGGAGGGGCCCTCCGTCTTCATCATaGACTGCAGGCTCTGATAGCCCTCTCCTGACATGT +
Preference number: 6 (lower is better)
Translates to: AGHHRRGPPSSS*TAGSDSPLLTC
Trigger: ACATGTCAGGAGAGGGCTATCAGAGCCTGCAGTCCATGATGAAGACGGAGGGCCCCTCCTATGGTGCCCTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS GCA 72 bp GATGGTTTCTTGGGCTGTTGTGCTTGCTGCTGTTGCTaGTGGGCTGACTGCTGCGAGTCCTTCTGTGGAGGC +
Preference number: 6 (lower is better)
Translates to: DGFLGCCACCCC*WADCCESFCGG
Trigger: GCCTCCACAGAAGGACTCGCAGCAGTCAGCCCAGCAGCAACAGCAGCAAGCACAACAGCCCAAGAAACCATC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS TCA 72 bp CTTCATCATGGACTGCAGGCTCTGATAGCCCTCTCCTaGCATGTAGGAGCTGGTGGTGGACATCCCCGTCAT +
Preference number: 6 (lower is better)
Translates to: LHHGLQALIALS*HVGAGGGHPRH
Trigger: ATGACGGGGATGTCCACCACCAGCTCCTACATGTCAGGAGAGGGCTATCAGAGCCTGCAGTCCATGATGAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS CCA 72 bp AGGCTTCCGGTCTGGAGGTGGGTGTGCTGGAGGCAATaGTGGGTGAGTAGCCTCAAGTTTGGGAATTTTAGG +
Preference number: 6 (lower is better)
Translates to: RLPVWRWVCWRQ*WVSSLKFGNFR
Trigger: CCTAAAATTCCCAAACTTGAGGCTACTCACCCACCATTGCCTCCAGCACACCCACCTCCAGACCGGAAGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS TCA 72 bp ACAAACGTCCCGCAAGATACATTACTGCGACAGCTATaGTCTCTGGTTCCCACTGCAGTGACAGGGTGGTGC +
Preference number: 6 (lower is better)
Translates to: TNVPQDTLLRQL*SLVPTAVTGWC
Trigger: GCACCACCCTGTCACTGCAGTGGGAACCAGAGATCATAGCTGTCGCAGTAATGTATCTTGCGGGACGTTTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS GCA 72 bp GTGGCTGGATCGAGTCCTTCAAGTTGTGAGGGTGTGTaGGCTAGGTCCTTCTTATCCCAGTACCAACATGGT +
Preference number: 6 (lower is better)
Translates to: VAGSSPSSCEGV*ARSFLSQYQHG
Trigger: ACCATGTTGGTACTGGGATAAGAAGGACCTAGCGCACACACCCTCACAACTTGAAGGACTCGATCCAGCCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS CAA 72 bp GTGGCAGATGTCTTCCAGAACGTCAACAGGGACATCTaGAACGAACTGCTCCCACCATCTCCTATACATGGG +
Preference number: 6 (lower is better)
Translates to: VADVFQNVNRDI*NELLPPSPIHG
Trigger: CCCATGTATAGGAGATGGTGGGAGCAGTTCGTTCAAGATGTCCCTGTTGACGTTCTGGAAGACATCTGCCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS TCA 72 bp TGGCAGATGTCTTCCAGAACGTCAACAGGGACATCTTaGACGAACTGCTCCCACCATCTCCTATACATGGGT +
Preference number: 6 (lower is better)
Translates to: WQMSSRTSTGTS*TNCSHHLLYMG
Trigger: ACCCATGTATAGGAGATGGTGGGAGCAGTTCGTTCAAGATGTCCCTGTTGACGTTCTGGAAGACATCTGCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS GCA 72 bp TACATTACTGCGACAGCTATGATCTCTGGTTCCCACTaGAGTGACAGGGTGGTGCAGAGACTGTCATTTACA +
Preference number: 6 (lower is better)
Translates to: YITATAMISGSH*SDRVVQRLSFT
Trigger: TGTAAATGACAGTCTCTGCACCACCCTGTCACTGCAGTGGGAACCAGAGATCATAGCTGTCGCAGTAATGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS TCA 72 bp ACCAACATGGTTTTGTGTGGTCCAGGTTTGCTGACGTaGCTGAAGGGCTTGAGTTTTCTTTGTTCTCCTTCA +
Preference number: 6 (lower is better)
Translates to: TNMVLCGPGLLT*LKGLSFLCSPS
Trigger: TGAAGGAGAACAAAGAAAACTCAAGCCCTTCAGTCACGTCAGCAAACCTGGACCACACAAAACCATGTTGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS GCA 72 bp ACATGGGTTTGGAGGTCCACTCTTGTATTTCAAATTTaGACAAACGTCCCGCAAGATACATTACTGCGACAG +
Preference number: 6 (lower is better)
Translates to: TWVWRSTLVFQI*TNVPQDTLLRQ
Trigger: CTGTCGCAGTAATGTATCTTGCGGGACGTTTGTGCAAATTTGAAATACAAGAGTGGACCTCCAAACCCATGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS CAA 72 bp CCACCATCTCCTATACATGGGTTTGGAGGTCCACTCTaGTATTTCAAATTTGCACAAACGTCCCGCAAGATA +
Preference number: 6 (lower is better)
Translates to: PPSPIHGFGGPL*YFKFAQTSRKI
Trigger: TATCTTGCGGGACGTTTGTGCAAATTTGAAATACAAGAGTGGACCTCCAAACCCATGTATAGGAGATGGTGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS CAA 90 bp CATCTCCTATACATGGGTTTGGAGGTCCACTCTTGTATTTCAAATTaGCACAAACGTCCCGCAAGATACATTACTGCGACAGCTATGATC +
Preference number: 6 (lower is better)
Translates to: HLLYMGLEVHSCISN*HKRPARYITATAMI
Trigger: GATCATAGCTGTCGCAGTAATGTATCTTGCGGGACGTTTGTGCAAATTTGAAATACAAGAGTGGACCTCCAAACCCATGTATAGGAGATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS GCA 72 bp AGCTGCTTTGCATATTTGAGCAGGAACTGGTACGGATaGTCTACTTGTAAGTCAAACTTTATGGTCTGCAGT +
Preference number: 6 (lower is better)
Translates to: SCFAYLSRNWYG*STCKSNFMVCS
Trigger: ACTGCAGACCATAAAGTTTGACTTACAAGTAGAGCATCCGTACCAGTTCCTGCTCAAATATGCAAAGCAGCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS CCA 72 bp ACTTCTTCCTTTGGGTCATCTCCAAACTGGCCGAACTaGACATCATTTAATAAACTACGAGCCGTTTTGATG +
Preference number: 6 (lower is better)
Translates to: TSSFGSSPNWPN*TSFNKLRAVLM
Trigger: CATCAAAACGGCTCGTAGTTTATTAAATGATGTCCAGTTCGGCCAGTTTGGAGATGACCCAAAGGAAGAAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS CAA 72 bp TACATGGGTTTGGAGGTCCACTCTTGTATTTCAAATTaGCACAAACGTCCCGCAAGATACATTACTGCGACA +
Preference number: 6 (lower is better)
Translates to: YMGLEVHSCISN*HKRPARYITAT
Trigger: TGTCGCAGTAATGTATCTTGCGGGACGTTTGTGCAAATTTGAAATACAAGAGTGGACCTCCAAACCCATGTA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS CCA 72 bp TCACCTTTGAGCTGCTTTGCATATTTGAGCAGGAACTaGTACGGATGCTCTACTTGTAAGTCAAACTTTATG +
Preference number: 6 (lower is better)
Translates to: SPLSCFAYLSRN*YGCSTCKSNFM
Trigger: CATAAAGTTTGACTTACAAGTAGAGCATCCGTACCAGTTCCTGCTCAAATATGCAAAGCAGCTCAAAGGTGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS GCA 72 bp CAGGGTGGTGCAGAGACTGTCATTTACAAATGTCCATaGCATTTGAACCAACTTCTGAATTTTGTTTTTATC +
Preference number: 6 (lower is better)
Translates to: QGGAETVIYKCP*HLNQLLNFVFI
Trigger: GATAAAAACAAAATTCAGAAGTTGGTTCAAATGGCATGGACATTTGTAAATGACAGTCTCTGCACCACCCTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2
CDS CAA 72 bp ATTTTGTTTTTATCACCTTTGAGCTGCTTTGCATATTaGAGCAGGAACTGGTACGGATGCTCTACTTGTAAG +
Preference number: 6 (lower is better)
Translates to: ILFLSPLSCFAY*SRNWYGCSTCK
Trigger: CTTACAAGTAGAGCATCCGTACCAGTTCCTGCTCAAATATGCAAAGCAGCTCAAAGGTGATAAAAACAAAAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000101055.5
ENSMUST00000221167.2