Pregenerated sensors for CCNH (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021548Ensembl transcript IDs: ENSMUST00000022030.11, ENSMUST00000163600.8, ENSMUST00000163713.2, ENSMUST00000164127.8, ENSMUST00000165077.8
Found 55 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TTATTAATATACAGCAAATACATACTAGTATGTCAAGCACTGCTGTaGCTAATCCCATCAGGAGCAGGCATTATTTTCCCCAATCTGTAT | + |
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Preference number: 1 (lower is better) Translates to: LLIYSKYILVCQALL*LIPSGAGIIFPNLY Trigger: ATACAGATTGGGGAAAATAATGCCTGCTCCTGATGGGATTAGTCACAGCAGTGCTTGACATACTAGTATGTATTTGCTGTATATTAATAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022030.11 |
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| 3UTR-3UTR GCA 90 bp | GCAGCTGCCCACTCTGTGAGGAGTGAAAAGTTATCCTTTGCCTGTGCTTATTTACTGCCAACGTGCTCCTaGCATGGACTCCATTCCCCC | + |
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Preference number: 2 (lower is better) Translates to: AAAHSVRSEKLSFACAYLLPTCS*HGLHSP Trigger: GGGGGAATGGAGTCCATGGCAGGAGCACGTTGGCAG...TAAATAAGCACAGGCAAAGGATAACTTTTCACTCCTCACAGAGTGGGCAGCTGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164127.8 |
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| 3UTR-3UTR TCA 90 bp | GCCCAGTACATTCTCCAGCTTAGTAATGAATCATCAATAGTTCAGTCTACTGGAAAGTGTAGCACAGTCTaGCTTTGTCTACCACAGGAG | + |
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Preference number: 2 (lower is better) Translates to: AQYILQLSNESSIVQSTGKCSTV*LCLPQE Trigger: CTCCTGTGGTAGACAAAGTCAGACTGTGCTACACTT...TCCAGTAGACTGAACTATTGATGATTCATTACTAAGCTGGAGAATGTACTGGGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022030.11 |
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| 3UTR CAA 90 bp | AACCATCTGGATTTTAATTCGTTTGTAGCATGTAGATCTCCAGCCTaGCCGTGTAATTCTGAAGCTGTGATTCAGTGTGCTCATAGGACA | + |
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Preference number: 2 (lower is better) Translates to: NHLDFNSFVACRSPA*PCNSEAVIQCAHRT Trigger: TGTCCTATGAGCACACTGAATCACAGCTTCAGAATTACACGGCAAGGCTGGAGATCTACATGCTACAAACGAATTAAAATCCAGATGGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163713.2 |
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| 3UTR-3UTR GCA 90 bp | TTCAGTCTACTGGAGAGACATCTGAGAAGCATTTGTAAGGGCTTCTGGAGGATATTGGTTAATAAGTACTaGTGCGGTCATTTATTATGG | + |
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Preference number: 2 (lower is better) Translates to: FSLLERHLRSICKGFWRILVNKY*CGHLLW Trigger: CCATAATAAATGACCGCAGCAGTACTTATTAACCAA...TATCCTCCAGAAGCCCTTACAAATGCTTCTCAGATGTCTCTCCAGTAGACTGAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022030.11 |
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| 3UTR-3UTR GCA 90 bp | TTGATTTGTTTATGTAGGCAAAAATACAGAAACTTGTTGCTTGGGGAAATACCGGTAGATCTCCAGCCTTaGCGTGTAATTCTGAAGCTG | + |
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Preference number: 2 (lower is better) Translates to: LICLCRQKYRNLLLGEIPVDLQP*RVILKL Trigger: CAGCTTCAGAATTACACGGCAAGGCTGGAGATCTAC...CGGTATTTCCCCAAGCAACAAGTTTCTGTATTTTTGCCTACATAAACAAATCAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000163713.2 |
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| 3UTR-3UTR CCA 90 bp | GGAAGTTACTTCAGTCAGGTAGCTTACTTTAGAAGTGGTTCAGAGTCATGTGAAAGTTTAAGACCAACTTaGGCTACAAAGCAAGACACT | + |
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Preference number: 2 (lower is better) Translates to: GSYFSQVAYFRSGSESCESLRPT*ATKQDT Trigger: AGTGTCTTGCTTTGTAGCCCAAGTTGGTCTTAAACT...TTCACATGACTCTGAACCACTTCTAAAGTAAGCTACCTGACTGAAGTAACTTCC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164127.8 |
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| 3UTR-3UTR TCA 90 bp | GCCCAGTACATTCTCCAGCTTAGTAATGAATCATCAATAGTTCAGTCTACTGGAAATCCTAGTGGATTATaGATATTCAAACTAGGTGGC | + |
|
Preference number: 2 (lower is better) Translates to: AQYILQLSNESSIVQSTGNPSGL*IFKLGG Trigger: GCCACCTAGTTTGAATATTCATAATCCACTAGGATT...TCCAGTAGACTGAACTATTGATGATTCATTACTAAGCTGGAGAATGTACTGGGC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022030.11 |
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| 3UTR-3UTR TCA 90 bp | AACACACACTTGATTTGTTTATGTAGGCAAAAATACAGAAACTTGTTGCTTGGGGTAATTCTGAAGCTGTaGTTCAGTGTGCTCATAGGA | + |
|
Preference number: 2 (lower is better) Translates to: NTHLICLCRQKYRNLLLGVILKL*FSVLIG Trigger: TCCTATGAGCACACTGAATCACAGCTTCAGAATTAC...CCCAAGCAACAAGTTTCTGTATTTTTGCCTACATAAACAAATCAAGTGTGTGTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000163713.2 |
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| 3UTR-3UTR CCA 90 bp | AATATACAGCAAATACATACTAGTATGTCAAGCACTGCTGTGACTAATCCCATCATTTGTAAGGGCTTCTaGAGGATAAAACCTATTTTC | + |
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Preference number: 2 (lower is better) Translates to: NIQQIHTSMSSTAVTNPIICKGF*RIKPIF Trigger: GAAAATAGGTTTTATCCTCCAGAAGCCCTTACAAAT...GATGGGATTAGTCACAGCAGTGCTTGACATACTAGTATGTATTTGCTGTATATT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022030.11 |
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| 3UTR TCA 72 bp | TTGACTGTGATAACGACATGGCAGCTGCCCACTCTGTaGGGAGTGAAAAGTTATCCTTTGCCTGTGCTTATT | + |
|
Preference number: 3 (lower is better) Translates to: LTVITTWQLPTL*GVKSYPLPVLI Trigger: AATAAGCACAGGCAAAGGATAACTTTTCACTCCTCACAGAGTGGGCAGCTGCCATGTCGTTATCACAGTCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164127.8 |
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| 3UTR TCA 72 bp | TACAGCAAATACATACTAGTATGTCAAGCACTGCTGTaGCTAATCCCATCAGGAGCAGGCATTATTTTCCCC | + |
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Preference number: 3 (lower is better) Translates to: YSKYILVCQALL*LIPSGAGIIFP Trigger: GGGGAAAATAATGCCTGCTCCTGATGGGATTAGTCACAGCAGTGCTTGACATACTAGTATGTATTTGCTGTA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022030.11 |
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| CDS-3UTR GCA 90 bp | GCAGCTGCCCACTCTGTGAGGAGTGAAAAGTTATCCTTTGCCTGTGCTTATTTACGCAGGCGCGCCAGCTaGTCCTCGCTAGCGAAGGTC | + |
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Preference number: 4 (lower is better) Translates to: AAAHSVRSEKLSFACAYLRRRAS*SSLAKV Trigger: GACCTTCGCTAGCGAGGAGCAGCTGGCGCGCCTGCG...TAAATAAGCACAGGCAAAGGATAACTTTTCACTCCTCACAGAGTGGGCAGCTGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164127.8 |
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| CDS-3UTR GCA 90 bp | GCCCAGTACATTCTCCAGCTTAGTAATGAATCATCAATAGTTCAGTCTACTGGACGCAGGCGCGCCAGCTaGTCCTCGCTAGCGAAGGTC | + |
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Preference number: 4 (lower is better) Translates to: AQYILQLSNESSIVQSTGRRRAS*SSLAKV Trigger: GACCTTCGCTAGCGAGGAGCAGCTGGCGCGCCTGCG...TCCAGTAGACTGAACTATTGATGATTCATTACTAAGCTGGAGAATGTACTGGGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022030.11 |
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| CDS-3UTR TCA 90 bp | ATGGCAGCTGCCCACTCTGTGAGGAGTGAAAAGTTATCCTTTGCCTGTGCTTATCCACAGCTTTGCACTTaGATTTGCGGTTGGCGTCCG | + |
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Preference number: 4 (lower is better) Translates to: MAAAHSVRSEKLSFACAYPQLCT*ICGWRP Trigger: CGGACGCCAACCGCAAATTCAAGTGCAAAGCTGTGG...ATAAGCACAGGCAAAGGATAACTTTTCACTCCTCACAGAGTGGGCAGCTGCCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164127.8 |
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| CDS-3UTR GCA 90 bp | ACTTGGGCTACAAAGCAAGACACTGTTTTAAACGTTCTCAGCCCCACCTCTCTACTAGCGAAGGTCCAGTaGCGTTTCTGGCTGCTGCTG | + |
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Preference number: 4 (lower is better) Translates to: TWATKQDTVLNVLSPTSLLAKVQ*RFWLLL Trigger: CAGCAGCAGCCAGAAACGGCACTGGACCTTCGCTAG...TAGAGAGGTGGGGCTGAGAACGTTTAAAACAGTGTCTTGCTTTGTAGCCCAAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164127.8 |
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| CDS-3UTR GCA 90 bp | TTCAGTCTACTGGAGAGACATCTGAGAAGCATTTGTAAGGGCTTCTGGAGGATACTAGCGAAGGTCCAGTaGCGTTTCTGGCTGCTGCTG | + |
|
Preference number: 4 (lower is better) Translates to: FSLLERHLRSICKGFWRILAKVQ*RFWLLL Trigger: CAGCAGCAGCCAGAAACGGCACTGGACCTTCGCTAG...TATCCTCCAGAAGCCCTTACAAATGCTTCTCAGATGTCTCTCCAGTAGACTGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022030.11 |
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| CDS-3UTR TCA 90 bp | AATATACAGCAAATACATACTAGTATGTCAAGCACTGCTGTGACTAATCCCATCCCACAGCTTTGCACTTaGATTTGCGGTTGGCGTCCG | + |
|
Preference number: 4 (lower is better) Translates to: NIQQIHTSMSSTAVTNPIPQLCT*ICGWRP Trigger: CGGACGCCAACCGCAAATTCAAGTGCAAAGCTGTGG...GATGGGATTAGTCACAGCAGTGCTTGACATACTAGTATGTATTTGCTGTATATT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022030.11 |
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| CDS-3UTR TCA 90 bp | TTCAGTCTACTGGAGAGACATCTGAGAAGCATTTGTAAGGGCTTCTGGAGGATAAGTGTCAATTCTTCATaGGGCTCCAGAAACACTGGA | + |
|
Preference number: 4 (lower is better) Translates to: FSLLERHLRSICKGFWRISVNSS*GSRNTG Trigger: TCCAGTGTTTCTGGAGCCTCATGAAGAATTGACACT...TATCCTCCAGAAGCCCTTACAAATGCTTCTCAGATGTCTCTCCAGTAGACTGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022030.11 |
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| CDS-3UTR TCA 90 bp | TACTTTAGAAGTGGTTCAGAGTCATGTGAAAACAGCCCATGCATAGGCTTCCTGAGTGTCAATTCTTCATaGGGCTCCAGAAACACTGGA | + |
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Preference number: 4 (lower is better) Translates to: YFRSGSESCENSPCIGFLSVNSS*GSRNTG Trigger: TCCAGTGTTTCTGGAGCCTCATGAAGAATTGACACT...CAGGAAGCCTATGCATGGGCTGTTTTCACATGACTCTGAACCACTTCTAAAGTA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164127.8 |
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| CDS-3UTR TCA 90 bp | AGTGTAGCACAGTCTGACTTTGTCTACCACAGGAGGACATGGTTTGCAACTAATGAGTCTTTATATCGATaGGGAAGCCTTCAAATGGTC | + |
|
Preference number: 4 (lower is better) Translates to: SVAQSDFVYHRRTWFATNESLYR*GSLQMV Trigger: GACCATTTGAAGGCTTCCTCATCGATATAAAGACTC...ATTAGTTGCAAACCATGTCCTCCTGTGGTAGACAAAGTCAGACTGTGCTACACT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022030.11 |
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| CDS-3UTR GCA 90 bp | AATATACAGCAAATACATACTAGTATGTCAAGCACTGCTGTGACTAATCCCATCCAAAATCTGTTCCAGTaGCCTCTCCTGTCCAAGAGG | + |
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Preference number: 4 (lower is better) Translates to: NIQQIHTSMSSTAVTNPIQNLFQ*PLLSKR Trigger: CCTCTTGGACAGGAGAGGGCACTGGAACAGATTTTG...GATGGGATTAGTCACAGCAGTGCTTGACATACTAGTATGTATTTGCTGTATATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022030.11 |
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| CDS-3UTR CCA 90 bp | ACTTGGGCTACAAAGCAAGACACTGTTTTAAACGTTCTCAGCCCCACCTCTCTATTCAAATGGTCTGTATaGATTGTGGACAATAAGGTG | + |
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Preference number: 4 (lower is better) Translates to: TWATKQDTVLNVLSPTSLFKWSV*IVDNKV Trigger: CACCTTATTGTCCACAATCCATACAGACCATTTGAA...TAGAGAGGTGGGGCTGAGAACGTTTAAAACAGTGTCTTGCTTTGTAGCCCAAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164127.8 |
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| CDS-3UTR CCA 90 bp | GCCCAGTACATTCTCCAGCTTAGTAATGAATCATCAATAGTTCAGTCTACTGGAGAGGAAGCCTTCAAATaGTCTGTATGGATTGTGGAC | + |
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Preference number: 4 (lower is better) Translates to: AQYILQLSNESSIVQSTGEEAFK*SVWIVD Trigger: GTCCACAATCCATACAGACCATTTGAAGGCTTCCTC...TCCAGTAGACTGAACTATTGATGATTCATTACTAAGCTGGAGAATGTACTGGGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022030.11 |
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| CDS-3UTR CCA 90 bp | GGAAGTTACTTCAGTCAGGTAGCTTACTTTAGAAGTGGTTCAGAGTCATGTGAAGAGGAAGCCTTCAAATaGTCTGTATGGATTGTGGAC | + |
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Preference number: 4 (lower is better) Translates to: GSYFSQVAYFRSGSESCEEEAFK*SVWIVD Trigger: GTCCACAATCCATACAGACCATTTGAAGGCTTCCTC...TTCACATGACTCTGAACCACTTCTAAAGTAAGCTACCTGACTGAAGTAACTTCC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164127.8 |
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| CDS-3UTR CCA 90 bp | GCAGCTGCCCACTCTGTGAGGAGTGAAAAGTTATCCTTTGCCTGTGCTTATTTAATACCTCTTCCTGTTTaGGTTTCTTTGACACATAGT | + |
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Preference number: 4 (lower is better) Translates to: AAAHSVRSEKLSFACAYLIPLPV*VSLTHS Trigger: ACTATGTGTCAAAGAAACCCAAACAGGAAGAGGTAT...TAAATAAGCACAGGCAAAGGATAACTTTTCACTCCTCACAGAGTGGGCAGCTGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164127.8 |
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| CDS-3UTR GCA 90 bp | GCCCAGTACATTCTCCAGCTTAGTAATGAATCATCAATAGTTCAGTCTACTGGACGTAACCGCATTAAGTaGAAGGTCAGAAGAATGACA | + |
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Preference number: 4 (lower is better) Translates to: AQYILQLSNESSIVQSTGRNRIK*KVRRMT Trigger: TGTCATTCTTCTGACCTTGCACTTAATGCGGTTACG...TCCAGTAGACTGAACTATTGATGATTCATTACTAAGCTGGAGAATGTACTGGGC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022030.11 |
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| CDS-3UTR GCA 90 bp | ATCGTAGGAAGTTACTTCAGTCAGGTAGCTTACTTTAGAAGTGGTTCAGAGTCACGTAACCGCATTAAGTaGAAGGTCAGAAGAATGACA | + |
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Preference number: 4 (lower is better) Translates to: IVGSYFSQVAYFRSGSESRNRIK*KVRRMT Trigger: TGTCATTCTTCTGACCTTGCACTTAATGCGGTTACG...TGACTCTGAACCACTTCTAAAGTAAGCTACCTGACTGAAGTAACTTCCTACGAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164127.8 |
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| CDS-3UTR CCA 90 bp | AATATACAGCAAATACATACTAGTATGTCAAGCACTGCTGTGACTAATCCCATCAGGCACTTGATAAAATaGCGGTCAGGGCAATCTGTG | + |
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Preference number: 4 (lower is better) Translates to: NIQQIHTSMSSTAVTNPIRHLIK*RSGQSV Trigger: CACAGATTGCCCTGACCGCCATTTTATCAAGTGCCT...GATGGGATTAGTCACAGCAGTGCTTGACATACTAGTATGTATTTGCTGTATATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022030.11 |
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| CDS-3UTR CCA 90 bp | AATTCTGAAGCTGTGATTCAGTGTGCTCATAGGACATTAAGGACTGCTTTGGCAACAGCTCTTCCTGTTTaGGTTTCTTTGACACATAGT | + |
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Preference number: 4 (lower is better) Translates to: NSEAVIQCAHRTLRTALATALPV*VSLTHS Trigger: ACTATGTGTCAAAGAAACCCAAACAGGAAGAGCTGT...TGCCAAAGCAGTCCTTAATGTCCTATGAGCACACTGAATCACAGCTTCAGAATT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163713.2 |
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| 3UTR CAA 72 bp | CACAGTCTGACTTTGTCTACCACAGGAGGACATGGTTaGCAACTAATCCTAGTGGATTATGAATATTCAAAC | + |
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Preference number: 4 (lower is better) Translates to: HSLTLSTTGGHG*QLILVDYEYSN Trigger: GTTTGAATATTCATAATCCACTAGGATTAGTTGCAAACCATGTCCTCCTGTGGTAGACAAAGTCAGACTGTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022030.11 |
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| CDS-3UTR CCA 90 bp | GCCCAGTACATTCTCCAGCTTAGTAATGAATCATCAATAGTTCAGTCTACTGGATTCAAATGGTCTGTATaGATTGTGGACAATAAGGTG | + |
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Preference number: 4 (lower is better) Translates to: AQYILQLSNESSIVQSTGFKWSV*IVDNKV Trigger: CACCTTATTGTCCACAATCCATACAGACCATTTGAA...TCCAGTAGACTGAACTATTGATGATTCATTACTAAGCTGGAGAATGTACTGGGC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022030.11 |
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| CDS-3UTR CCA 90 bp | AATATACAGCAAATACATACTAGTATGTCAAGCACTGCTGTGACTAATCCCATCCCTCCTCTTCCTGTTTaGGTTTCTTTGACACATAGT | + |
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Preference number: 4 (lower is better) Translates to: NIQQIHTSMSSTAVTNPIPPLPV*VSLTHS Trigger: ACTATGTGTCAAAGAAACCCAAACAGGAAGAGGAGG...GATGGGATTAGTCACAGCAGTGCTTGACATACTAGTATGTATTTGCTGTATATT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022030.11 |
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| CDS-3UTR GCA 90 bp | AACACACACTTGATTTGTTTATGTAGGCAAAAATACAGAAACTTGTTGCTTGGGCGTAACCGCATTAAGTaGAAGGTCAGAAGAATGACA | + |
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Preference number: 4 (lower is better) Translates to: NTHLICLCRQKYRNLLLGRNRIK*KVRRMT Trigger: TGTCATTCTTCTGACCTTGCACTTAATGCGGTTACG...CCCAAGCAACAAGTTTCTGTATTTTTGCCTACATAAACAAATCAAGTGTGTGTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000163713.2 |
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| CDS GCA 90 bp | TTGCACTTGAATTTGCGGTTGGCGTCCGCCCGCAGGCGCGCCAGCTaGTCCTCGCTAGCGAAGGTCCAGTGCCGTTTCTGGCTGCTGCTG | + |
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Preference number: 5 (lower is better) Translates to: LHLNLRLASARRRAS*SSLAKVQCRFWLLL Trigger: CAGCAGCAGCCAGAAACGGCACTGGACCTTCGCTAGCGAGGAGCAGCTGGCGCGCCTGCGGGCGGACGCCAACCGCAAATTCAAGTGCAA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000022030.11 ENSMUST00000163600.8 ENSMUST00000164127.8 ENSMUST00000165077.8 |
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| CDS-3UTR CAA 90 bp | AGTGTAGCACAGTCTGACTTTGTCTACCACAGGAGGACATGGTTTGCAACTAATCACTTGAATTTGCGGTaGGCGTCCGCCCGCAGGCGC | + |
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Preference number: 5 (lower is better) Translates to: SVAQSDFVYHRRTWFATNHLNLR*ASARRR Trigger: GCGCCTGCGGGCGGACGCCAACCGCAAATTCAAGTG...ATTAGTTGCAAACCATGTCCTCCTGTGGTAGACAAAGTCAGACTGTGCTACACT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022030.11 |
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| CDS-3UTR CAA 90 bp | ACTTGGGCTACAAAGCAAGACACTGTTTTAAACGTTCTCAGCCCCACCTCTCTAGCTTTGCACTTGAATTaGCGGTTGGCGTCCGCCCGC | + |
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Preference number: 5 (lower is better) Translates to: TWATKQDTVLNVLSPTSLALHLN*RLASAR Trigger: GCGGGCGGACGCCAACCGCAAATTCAAGTGCAAAGC...TAGAGAGGTGGGGCTGAGAACGTTTAAAACAGTGTCTTGCTTTGTAGCCCAAGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164127.8 |
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| CDS-3UTR CAA 90 bp | ATCGTAGGAAGTTACTTCAGTCAGGTAGCTTACTTTAGAAGTGGTTCAGAGTCACACTTGAATTTGCGGTaGGCGTCCGCCCGCAGGCGC | + |
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Preference number: 5 (lower is better) Translates to: IVGSYFSQVAYFRSGSESHLNLR*ASARRR Trigger: GCGCCTGCGGGCGGACGCCAACCGCAAATTCAAGTG...TGACTCTGAACCACTTCTAAAGTAAGCTACCTGACTGAAGTAACTTCCTACGAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164127.8 |
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| CDS-3UTR CAA 90 bp | TTCAGTCTACTGGAGAGACATCTGAGAAGCATTTGTAAGGGCTTCTGGAGGATAGCTTTGCACTTGAATTaGCGGTTGGCGTCCGCCCGC | + |
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Preference number: 5 (lower is better) Translates to: FSLLERHLRSICKGFWRIALHLN*RLASAR Trigger: GCGGGCGGACGCCAACCGCAAATTCAAGTGCAAAGC...TATCCTCCAGAAGCCCTTACAAATGCTTCTCAGATGTCTCTCCAGTAGACTGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022030.11 |
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| CDS-3UTR CAA 90 bp | GCAGCTGCCCACTCTGTGAGGAGTGAAAAGTTATCCTTTGCCTGTGCTTATTTACCGTTAGCCACAGCTTaGCACTTGAATTTGCGGTTG | + |
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Preference number: 5 (lower is better) Translates to: AAAHSVRSEKLSFACAYLPLATA*HLNLRL Trigger: CAACCGCAAATTCAAGTGCAAAGCTGTGGCTAACGG...TAAATAAGCACAGGCAAAGGATAACTTTTCACTCCTCACAGAGTGGGCAGCTGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164127.8 |
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| CDS-3UTR CAA 90 bp | GCCCAGTACATTCTCCAGCTTAGTAATGAATCATCAATAGTTCAGTCTACTGGAGCCACAGCTTTGCACTaGAATTTGCGGTTGGCGTCC | + |
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Preference number: 5 (lower is better) Translates to: AQYILQLSNESSIVQSTGATALH*NLRLAS Trigger: GGACGCCAACCGCAAATTCAAGTGCAAAGCTGTGGC...TCCAGTAGACTGAACTATTGATGATTCATTACTAAGCTGGAGAATGTACTGGGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022030.11 |
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| CDS-3UTR CAA 90 bp | TTCAGTCTACTGGAGAGACATCTGAGAAGCATTTGTAAGGGCTTCTGGAGGATACCGTTAGCCACAGCTTaGCACTTGAATTTGCGGTTG | + |
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Preference number: 5 (lower is better) Translates to: FSLLERHLRSICKGFWRIPLATA*HLNLRL Trigger: CAACCGCAAATTCAAGTGCAAAGCTGTGGCTAACGG...TATCCTCCAGAAGCCCTTACAAATGCTTCTCAGATGTCTCTCCAGTAGACTGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022030.11 |
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| CDS TCA 90 bp | GAATCTCCGGATTCTCCAACATGGGGTACCGAGTCTTTATATCGATaGGGAAGCCTTCAAATGGTATTATTATCCGAGGGTGATATTCCA | + |
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Preference number: 5 (lower is better) Translates to: ESPDSPTWGTESLYR*GSLQMVLLSEGDIP Trigger: TGGAATATCACCCTCGGATAATAATACCATTTGAAGGCTTCCTCATCGATATAAAGACTCGGTACCCCATGTTGGAGAATCCGGAGATTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165077.8 |
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| CDS CCA 90 bp | ATAGTACTTGCAAAGTGTCAATTCTTCATGAGGCTCCAGAAACACTaGATCATTTGGAAGAACCTTCCCGTTAGCCACAGCTTTGCACTT | + |
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Preference number: 5 (lower is better) Translates to: IVLAKCQFFMRLQKH*IIWKNLPVSHSFAL Trigger: AAGTGCAAAGCTGTGGCTAACGGGAAGGTTCTTCCAAATGATCCAGTGTTTCTGGAGCCTCATGAAGAATTGACACTTTGCAAGTACTAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000022030.11 ENSMUST00000163600.8 ENSMUST00000164127.8 ENSMUST00000165077.8 |
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| CDS GCA 72 bp | AATTTGCGGTTGGCGTCCGCCCGCAGGCGCGCCAGCTaGTCCTCGCTAGCGAAGGTCCAGTGCCGTTTCTGG | + |
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Preference number: 6 (lower is better) Translates to: NLRLASARRRAS*SSLAKVQCRFW Trigger: CCAGAAACGGCACTGGACCTTCGCTAGCGAGGAGCAGCTGGCGCGCCTGCGGGCGGACGCCAACCGCAAATT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000022030.11 ENSMUST00000163600.8 ENSMUST00000164127.8 ENSMUST00000165077.8 |
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| CDS CAA 72 bp | TTCCCGTTAGCCACAGCTTTGCACTTGAATTTGCGGTaGGCGTCCGCCCGCAGGCGCGCCAGCTGCTCCTCG | + |
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Preference number: 6 (lower is better) Translates to: FPLATALHLNLR*ASARRRASCSS Trigger: CGAGGAGCAGCTGGCGCGCCTGCGGGCGGACGCCAACCGCAAATTCAAGTGCAAAGCTGTGGCTAACGGGAA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000022030.11 ENSMUST00000163600.8 ENSMUST00000164127.8 ENSMUST00000165077.8 |
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| CDS CAA 90 bp | GGAAGAACCTTCCCGTTAGCCACAGCTTTGCACTTGAATTTGCGGTaGGCGTCCGCCCGCAGGCGCGCCAGCTGCTCCTCGCTAGCGAAG | + |
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Preference number: 6 (lower is better) Translates to: GRTFPLATALHLNLR*ASARRRASCSSLAK Trigger: CTTCGCTAGCGAGGAGCAGCTGGCGCGCCTGCGGGCGGACGCCAACCGCAAATTCAAGTGCAAAGCTGTGGCTAACGGGAAGGTTCTTCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000022030.11 ENSMUST00000163600.8 ENSMUST00000164127.8 ENSMUST00000165077.8 |
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| CDS CAA 72 bp | AGAACCTTCCCGTTAGCCACAGCTTTGCACTTGAATTaGCGGTTGGCGTCCGCCCGCAGGCGCGCCAGCTGC | + |
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Preference number: 6 (lower is better) Translates to: RTFPLATALHLN*RLASARRRASC Trigger: GCAGCTGGCGCGCCTGCGGGCGGACGCCAACCGCAAATTCAAGTGCAAAGCTGTGGCTAACGGGAAGGTTCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000022030.11 ENSMUST00000163600.8 ENSMUST00000164127.8 ENSMUST00000165077.8 |
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| CDS CAA 72 bp | TTTGGAAGAACCTTCCCGTTAGCCACAGCTTTGCACTaGAATTTGCGGTTGGCGTCCGCCCGCAGGCGCGCC | + |
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Preference number: 6 (lower is better) Translates to: FGRTFPLATALH*NLRLASARRRA Trigger: GGCGCGCCTGCGGGCGGACGCCAACCGCAAATTCAAGTGCAAAGCTGTGGCTAACGGGAAGGTTCTTCCAAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000022030.11 ENSMUST00000163600.8 ENSMUST00000164127.8 ENSMUST00000165077.8 |
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| CDS CAA 90 bp | TCATTTGGAAGAACCTTCCCGTTAGCCACAGCTTTGCACTTGAATTaGCGGTTGGCGTCCGCCCGCAGGCGCGCCAGCTGCTCCTCGCTA | + |
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Preference number: 6 (lower is better) Translates to: SFGRTFPLATALHLN*RLASARRRASCSSL Trigger: TAGCGAGGAGCAGCTGGCGCGCCTGCGGGCGGACGCCAACCGCAAATTCAAGTGCAAAGCTGTGGCTAACGGGAAGGTTCTTCCAAATGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000022030.11 ENSMUST00000163600.8 ENSMUST00000164127.8 ENSMUST00000165077.8 |
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| CDS CAA 90 bp | ACTGGATCATTTGGAAGAACCTTCCCGTTAGCCACAGCTTTGCACTaGAATTTGCGGTTGGCGTCCGCCCGCAGGCGCGCCAGCTGCTCC | + |
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Preference number: 6 (lower is better) Translates to: TGSFGRTFPLATALH*NLRLASARRRASCS Trigger: GGAGCAGCTGGCGCGCCTGCGGGCGGACGCCAACCGCAAATTCAAGTGCAAAGCTGTGGCTAACGGGAAGGTTCTTCCAAATGATCCAGT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000022030.11 ENSMUST00000163600.8 ENSMUST00000164127.8 ENSMUST00000165077.8 |
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| CDS CAA 72 bp | GGATCATTTGGAAGAACCTTCCCGTTAGCCACAGCTTaGCACTTGAATTTGCGGTTGGCGTCCGCCCGCAGG | + |
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Preference number: 6 (lower is better) Translates to: GSFGRTFPLATA*HLNLRLASARR Trigger: CCTGCGGGCGGACGCCAACCGCAAATTCAAGTGCAAAGCTGTGGCTAACGGGAAGGTTCTTCCAAATGATCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000022030.11 ENSMUST00000163600.8 ENSMUST00000164127.8 ENSMUST00000165077.8 |
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| CDS GCA 72 bp | TTCATAGCCTTTCCTCTTCTTCGTAACCGCATTAAGTaGAAGGTCAGAAGAATGACACCGCTCCAGCTTCTG | + |
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Preference number: 6 (lower is better) Translates to: FIAFPLLRNRIK*KVRRMTPLQLL Trigger: CAGAAGCTGGAGCGGTGTCATTCTTCTGACCTTGCACTTAATGCGGTTACGAAGAAGAGGAAAGGCTATGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000022030.11 ENSMUST00000163600.8 ENSMUST00000163713.2 ENSMUST00000164127.8 |
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| CDS TCA 72 bp | GATTCTCCAACATGGGGTACCGAGTCTTTATATCGATaGGGAAGCCTTCAAATGGTCTGTATGGATTGTGGA | + |
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Preference number: 6 (lower is better) Translates to: DSPTWGTESLYR*GSLQMVCMDCG Trigger: TCCACAATCCATACAGACCATTTGAAGGCTTCCTCATCGATATAAAGACTCGGTACCCCATGTTGGAGAATC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022030.11 ENSMUST00000164127.8 |
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| CDS TCA 72 bp | TTGATAAAATGGCGGTCAGGGCAATCTTTATATCGATaGGGAAGCCTTCAAATGGTCTGTATGGATTGTGGA | + |
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Preference number: 6 (lower is better) Translates to: LIKWRSGQSLYR*GSLQMVCMDCG Trigger: TCCACAATCCATACAGACCATTTGAAGGCTTCCTCATCGATATAAAGATTGCCCTGACCGCCATTTTATCAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163600.8 |
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