Pregenerated sensors for CCNG1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020326Ensembl transcript IDs: ENSMUST00000020576.8
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AAATCCTGTACCGTAGGAAACTCAGGTCAGAGTGGCAGAAAGACTTaGGGGACCGTTTTTGCTGCTGCTGTAATCCTGCTACATAGGCAA | + |
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Preference number: 1 (lower is better) Translates to: KSCTVGNSGQSGRKT*GTVFAAAVILLHRQ Trigger: TTGCCTATGTAGCAGGATTACAGCAGCAGCAAAAACGGTCCCTCAAGTCTTTCTGCCACTCTGACCTGAGTTTCCTACGGTACAGGATTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020576.8 |
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| 3UTR TCA 90 bp | GAGAACTTGGGAGTTCTTCGTTCTCTCCTTCCATCATGTGGGTCCTaGAGAATGAAGTCAGGTTGTCAGGCTTCCCTTCTAAACCATCTT | + |
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Preference number: 1 (lower is better) Translates to: ENLGVLRSLLPSCGS*RMKSGCQASLLNHL Trigger: AAGATGGTTTAGAAGGGAAGCCTGACAACCTGACTTCATTCTTCAGGACCCACATGATGGAAGGAGAGAACGAAGAACTCCCAAGTTCTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020576.8 |
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| 3UTR TCA 90 bp | AGAATGAAGTCAGGTTGTCAGGCTTCCCTTCTAAACCATCTTCCCTaGCTTCCCAGCAACATTTACCCCTGGTGTTTGGTTGTTTTGAGT | + |
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Preference number: 1 (lower is better) Translates to: RMKSGCQASLLNHLP*LPSNIYPWCLVVLS Trigger: ACTCAAAACAACCAAACACCAGGGGTAAATGTTGCTGGGAAGTCAGGGAAGATGGTTTAGAAGGGAAGCCTGACAACCTGACTTCATTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020576.8 |
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| 3UTR-3UTR GCA 90 bp | ACCGTGAGGCCATTCTGCCAAGGCTACTGTGGCAAGGTGCTGAGGTTTCTCAGAAATCTGCCTACAAACTaGGAGCTGCTAAAGGTGAAC | + |
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Preference number: 2 (lower is better) Translates to: TVRPFCQGYCGKVLRFLRNLPTN*ELLKVN Trigger: GTTCACCTTTAGCAGCTCGCAGTTTGTAGGCAGATT...TCTGAGAAACCTCAGCACCTTGCCACAGTAGCCTTGGCAGAATGGCCTCACGGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020576.8 |
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| 3UTR-3UTR TCA 90 bp | AATGGTTCCAGCTACTCTAGGTTGACTCAGGCTGTCCAGGGCCCTGAGCTGCTGTGTTTTGAGTGTTTTTaGGACAAGGTCTCTAGCTGT | + |
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Preference number: 2 (lower is better) Translates to: NGSSYSRLTQAVQGPELLCFECF*DKVSSC Trigger: ACAGCTAGAGACCTTGTCTCAAAAACACTCAAAACA...CAGCAGCTCAGGGCCCTGGACAGCCTGAGTCAACCTAGAGTAGCTGGAACCATT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020576.8 |
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| 3UTR CAA 90 bp | TCGTTCTCTCCTTCCATCATGTGGGTCCTGAAGAATGAAGTCAGGTaGTCAGGCTTCCCTTCTAAACCATCTTCCCTGACTTCCCAGCAA | + |
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Preference number: 2 (lower is better) Translates to: SFSPSIMWVLKNEVR*SGFPSKPSSLTSQQ Trigger: TTGCTGGGAAGTCAGGGAAGATGGTTTAGAAGGGAAGCCTGACAACCTGACTTCATTCTTCAGGACCCACATGATGGAAGGAGAGAACGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020576.8 |
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| 3UTR-3UTR CCA 90 bp | CGTAGGAAACTCAGGTCAGAGTGGCAGAAAGACTTGAGGGACCGTTTTTGCTGCGCTTGTTGTTCTGCATaGGCTTATGCAACTTTAAAT | + |
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Preference number: 2 (lower is better) Translates to: RRKLRSEWQKDLRDRFCCACCSA*AYATLN Trigger: ATTTAAAGTTGCATAAGCCCATGCAGAACAACAAGC...GCAGCAAAAACGGTCCCTCAAGTCTTTCTGCCACTCTGACCTGAGTTTCCTACG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020576.8 |
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| 3UTR-3UTR GCA 90 bp | TCTTCCCTGACTTCCCAGCAACATTTACCCCTGGTGTTTGGTTGTTTTGAGTGTATATATGGGTCACATTaGTTGTTGTTCTGCATGGGC | + |
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Preference number: 2 (lower is better) Translates to: SSLTSQQHLPLVFGCFECIYGSH*LLFCMG Trigger: GCCCATGCAGAACAACAAGCAATGTGACCCATATAT...ACACTCAAAACAACCAAACACCAGGGGTAAATGTTGCTGGGAAGTCAGGGAAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020576.8 |
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| 3UTR-3UTR GCA 90 bp | AGCTGCTGCCTATGTTTTAACAGTGTGGATCATACATTCAAGCCAGCATGGAGATTACTTGGTTATGGGTaGCAAGAAACCATTTACCGC | + |
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Preference number: 2 (lower is better) Translates to: SCCLCFNSVDHTFKPAWRLLGYG*QETIYR Trigger: GCGGTAAATGGTTTCTTGGCACCCATAACCAAGTAA...TCTCCATGCTGGCTTGAATGTATGATCCACACTGTTAAAACATAGGCAGCAGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020576.8 |
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| 3UTR-3UTR CCA 90 bp | AGCTGCTGCCTATGTTTTAACAGTGTGGATCATACATTCAAGCCAGCATGGAGAATATGTGAGAGAACTTaGGAGTTCTTCGTTCTCTCC | + |
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Preference number: 2 (lower is better) Translates to: SCCLCFNSVDHTFKPAWRICERT*EFFVLS Trigger: GGAGAGAACGAAGAACTCCCAAGTTCTCTCACATAT...TCTCCATGCTGGCTTGAATGTATGATCCACACTGTTAAAACATAGGCAGCAGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020576.8 |
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| 3UTR-3UTR TCA 90 bp | AATCCCACCTGTAAATTAACTATTACTTGGTTATGGGTGCCAAGAAACCATTTACCATCATGTGGGTCCTaGAGAATGAAGTCAGGTTGT | + |
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Preference number: 2 (lower is better) Translates to: NPTCKLTITWLWVPRNHLPSCGS*RMKSGC Trigger: ACAACCTGACTTCATTCTTCAGGACCCACATGATGG...TAAATGGTTTCTTGGCACCCATAACCAAGTAATAGTTAATTTACAGGTGGGATT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020576.8 |
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| 3UTR-3UTR CAA 90 bp | AATGGTTCCAGCTACTCTAGGTTGACTCAGGCTGTCCAGGGCCCTGAGCTGCTGGGGTCACATTGCTTGTaGTTCTGCATGGGCTTATGC | + |
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Preference number: 3 (lower is better) Translates to: NGSSYSRLTQAVQGPELLGSHCL*FCMGLC Trigger: GCATAAGCCCATGCAGAACAACAAGCAATGTGACCC...CAGCAGCTCAGGGCCCTGGACAGCCTGAGTCAACCTAGAGTAGCTGGAACCATT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020576.8 |
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| 3UTR TCA 72 bp | CCATTACATGTCAAAATGGTTCCAGCTACTCTAGGTTaGCTCAGGCTGTCCAGGGCCCTGAGCTGCTGCCTA | + |
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Preference number: 3 (lower is better) Translates to: PLHVKMVPATLG*LRLSRALSCCL Trigger: TAGGCAGCAGCTCAGGGCCCTGGACAGCCTGAGTCAACCTAGAGTAGCTGGAACCATTTTGACATGTAATGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020576.8 |
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| 3UTR-3UTR CAA 90 bp | AATGGTTCCAGCTACTCTAGGTTGACTCAGGCTGTCCAGGGCCCTGAGCTGCTGTATGGGTCACATTGCTaGTTGTTCTGCATGGGCTTA | + |
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Preference number: 3 (lower is better) Translates to: NGSSYSRLTQAVQGPELLYGSHC*LFCMGL Trigger: TAAGCCCATGCAGAACAACAAGCAATGTGACCCATA...CAGCAGCTCAGGGCCCTGGACAGCCTGAGTCAACCTAGAGTAGCTGGAACCATT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020576.8 |
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| 3UTR TCA 72 bp | ACCGTAGGAAACTCAGGTCAGAGTGGCAGAAAGACTTaGGGGACCGTTTTTGCTGCTGCTGTAATCCTGCTA | + |
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Preference number: 3 (lower is better) Translates to: TVGNSGQSGRKT*GTVFAAAVILL Trigger: TAGCAGGATTACAGCAGCAGCAAAAACGGTCCCTCAAGTCTTTCTGCCACTCTGACCTGAGTTTCCTACGGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020576.8 |
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| 3UTR TCA 72 bp | TCAGGTTGTCAGGCTTCCCTTCTAAACCATCTTCCCTaGCTTCCCAGCAACATTTACCCCTGGTGTTTGGTT | + |
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Preference number: 3 (lower is better) Translates to: SGCQASLLNHLP*LPSNIYPWCLV Trigger: AACCAAACACCAGGGGTAAATGTTGCTGGGAAGTCAGGGAAGATGGTTTAGAAGGGAAGCCTGACAACCTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020576.8 |
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| 3UTR TCA 72 bp | GGAGTTCTTCGTTCTCTCCTTCCATCATGTGGGTCCTaGAGAATGAAGTCAGGTTGTCAGGCTTCCCTTCTA | + |
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Preference number: 3 (lower is better) Translates to: GVLRSLLPSCGS*RMKSGCQASLL Trigger: TAGAAGGGAAGCCTGACAACCTGACTTCATTCTTCAGGACCCACATGATGGAAGGAGAGAACGAAGAACTCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020576.8 |
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| 3UTR CCA 72 bp | GAACTTGGGAGTTCTTCGTTCTCTCCTTCCATCATGTaGGTCCTGAAGAATGAAGTCAGGTTGTCAGGCTTC | + |
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Preference number: 3 (lower is better) Translates to: ELGSSSFSPSIM*VLKNEVRLSGF Trigger: GAAGCCTGACAACCTGACTTCATTCTTCAGGACCCACATGATGGAAGGAGAGAACGAAGAACTCCCAAGTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020576.8 |
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| 3UTR-3UTR CAA 90 bp | ACCGTGAGGCCATTCTGCCAAGGCTACTGTGGCAAGGTGCTGAGGTTTCTCAGAATTTACCCCTGGTGTTaGGTTGTTTTGAGTGTTTTT | + |
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Preference number: 3 (lower is better) Translates to: TVRPFCQGYCGKVLRFLRIYPWC*VVLSVF Trigger: AAAAACACTCAAAACAACCAAACACCAGGGGTAAAT...TCTGAGAAACCTCAGCACCTTGCCACAGTAGCCTTGGCAGAATGGCCTCACGGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020576.8 |
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| 3UTR GCA 72 bp | GACACTCTGGCAGTTTCCAGAAACCTAACATGGGCATaGCCTATATTACTTTGTAAGTCCATCACCCAGGTT | + |
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Preference number: 3 (lower is better) Translates to: DTLAVSRNLTWA*PILLCKSITQV Trigger: AACCTGGGTGATGGACTTACAAAGTAATATAGGGCATGCCCATGTTAGGTTTCTGGAAACTGCCAGAGTGTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020576.8 |
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| 3UTR-3UTR CAA 90 bp | GACACTCTGGCAGTTTCCAGAAACCTAACATGGGCATGCCCTATATTACTTTGTCATATATGGGTCACATaGCTTGTTGTTCTGCATGGG | + |
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Preference number: 3 (lower is better) Translates to: DTLAVSRNLTWACPILLCHIWVT*LVVLHG Trigger: CCCATGCAGAACAACAAGCAATGTGACCCATATATG...ACAAAGTAATATAGGGCATGCCCATGTTAGGTTTCTGGAAACTGCCAGAGTGTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020576.8 |
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| 3UTR CCA 72 bp | AAAAATCCCACCTGTAAATTAACTATTACTTGGTTATaGGTGCCAAGAAACCATTTACCGCTTAAGTACCCC | + |
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Preference number: 3 (lower is better) Translates to: KNPTCKLTITWL*VPRNHLPLKYP Trigger: GGGGTACTTAAGCGGTAAATGGTTTCTTGGCACCCATAACCAAGTAATAGTTAATTTACAGGTGGGATTTTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020576.8 |
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| 3UTR-3UTR CAA 90 bp | AATCCCACCTGTAAATTAACTATTACTTGGTTATGGGTGCCAAGAAACCATTTACCACCTAAGAATATATaGATCAAATCTGGGAAGTCA | + |
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Preference number: 3 (lower is better) Translates to: NPTCKLTITWLWVPRNHLPPKNI*IKSGKS Trigger: TGACTTCCCAGATTTGATCAATATATTCTTAGGTGG...TAAATGGTTTCTTGGCACCCATAACCAAGTAATAGTTAATTTACAGGTGGGATT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020576.8 |
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| CDS-3UTR GCA 90 bp | ACCGTGAGGCCATTCTGCCAAGGCTACTGTGGCAAGGTGCTGAGGTTTCTCAGATCAGTTGCCGTGCAGTaGGTCCAGACACAATCCATT | + |
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Preference number: 4 (lower is better) Translates to: TVRPFCQGYCGKVLRFLRSVAVQ*VQTQSI Trigger: AATGGATTGTGTCTGGACGCACTGCACGGCAACTGA...TCTGAGAAACCTCAGCACCTTGCCACAGTAGCCTTGGCAGAATGGCCTCACGGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020576.8 |
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| CDS-3UTR TCA 90 bp | AATGGTTCCAGCTACTCTAGGTTGACTCAGGCTGTCCAGGGCCCTGAGCTGCTGATCCATTTCAACTTCTaGCCGTTAGGTTTGGAGCAC | + |
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Preference number: 4 (lower is better) Translates to: NGSSYSRLTQAVQGPELLIHFNF*PLGLEH Trigger: GTGCTCCAAACCTAACGGTCAGAAGTTGAAATGGAT...CAGCAGCTCAGGGCCCTGGACAGCCTGAGTCAACCTAGAGTAGCTGGAACCATT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020576.8 |
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| CDS-3UTR TCA 90 bp | CGTAGGAAACTCAGGTCAGAGTGGCAGAAAGACTTGAGGGACCGTTTTTGCTGCATCTTGCAGTCATTCTaGGGCCATTATCATGGGCCG | + |
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Preference number: 4 (lower is better) Translates to: RRKLRSEWQKDLRDRFCCILQSF*GHYHGP Trigger: CGGCCCATGATAATGGCCTCAGAATGACTGCAAGAT...GCAGCAAAAACGGTCCCTCAAGTCTTTCTGCCACTCTGACCTGAGTTTCCTACG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020576.8 |
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| CDS-3UTR TCA 90 bp | TCTTCCCTGACTTCCCAGCAACATTTACCCCTGGTGTTTGGTTGTTTTGAGTGTCCGCAGACCTTTGGCTaGCATCTAGACTCCTGTTCC | + |
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Preference number: 4 (lower is better) Translates to: SSLTSQQHLPLVFGCFECPQTFG*HLDSCS Trigger: GGAACAGGAGTCTAGATGTCAGCCAAAGGTCTGCGG...ACACTCAAAACAACCAAACACCAGGGGTAAATGTTGCTGGGAAGTCAGGGAAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020576.8 |
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| 3UTR CAA 72 bp | TACCGTAGGAAACTCAGGTCAGAGTGGCAGAAAGACTaGAGGGACCGTTTTTGCTGCTGCTGTAATCCTGCT | + |
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Preference number: 4 (lower is better) Translates to: YRRKLRSEWQKD*RDRFCCCCNPA Trigger: AGCAGGATTACAGCAGCAGCAAAAACGGTCCCTCAAGTCTTTCTGCCACTCTGACCTGAGTTTCCTACGGTA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020576.8 |
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| 3UTR CAA 72 bp | CCTTCCATCATGTGGGTCCTGAAGAATGAAGTCAGGTaGTCAGGCTTCCCTTCTAAACCATCTTCCCTGACT | + |
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Preference number: 4 (lower is better) Translates to: PSIMWVLKNEVR*SGFPSKPSSLT Trigger: AGTCAGGGAAGATGGTTTAGAAGGGAAGCCTGACAACCTGACTTCATTCTTCAGGACCCACATGATGGAAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020576.8 |
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| CDS-3UTR GCA 90 bp | CGTAGGAAACTCAGGTCAGAGTGGCAGAAAGACTTGAGGGACCGTTTTTGCTGCCAGCACAGAAGGCTTTaGCTTAGAAAATATGATCCT | + |
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Preference number: 4 (lower is better) Translates to: RRKLRSEWQKDLRDRFCCQHRRL*LRKYDP Trigger: AGGATCATATTTTCTAAGGCAAAGCCTTCTGTGCTG...GCAGCAAAAACGGTCCCTCAAGTCTTTCTGCCACTCTGACCTGAGTTTCCTACG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020576.8 |
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| CDS-3UTR TCA 90 bp | CGTAGGAAACTCAGGTCAGAGTGGCAGAAAGACTTGAGGGACCGTTTTTGCTGCTCAAAGCCAAAGAACTaGGTTAGACTAAGTAGATCT | + |
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Preference number: 4 (lower is better) Translates to: RRKLRSEWQKDLRDRFCCSKPKN*VRLSRS Trigger: AGATCTACTTAGTCTAACTCAGTTCTTTGGCTTTGA...GCAGCAAAAACGGTCCCTCAAGTCTTTCTGCCACTCTGACCTGAGTTTCCTACG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020576.8 |
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| CDS-3UTR GCA 90 bp | AGCTGCTGCCTATGTTTTAACAGTGTGGATCATACATTCAAGCCAGCATGGAGATTGGAAACAAGCTCTTaGCAGAAGGTCAAATCTCGG | + |
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Preference number: 4 (lower is better) Translates to: SCCLCFNSVDHTFKPAWRLETSS*QKVKSR Trigger: CCGAGATTTGACCTTCTGGCAAGAGCTTGTTTCCAA...TCTCCATGCTGGCTTGAATGTATGATCCACACTGTTAAAACATAGGCAGCAGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020576.8 |
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| CDS-3UTR CCA 90 bp | AGCTGCTGCCTATGTTTTAACAGTGTGGATCATACATTCAAGCCAGCATGGAGACTGAGGCCATTATCATaGGCCGACTCAATTAGTTTC | + |
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Preference number: 4 (lower is better) Translates to: SCCLCFNSVDHTFKPAWRLRPLS*ADSISF Trigger: GAAACTAATTGAGTCGGCCCATGATAATGGCCTCAG...TCTCCATGCTGGCTTGAATGTATGATCCACACTGTTAAAACATAGGCAGCAGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020576.8 |
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| 3UTR CAA 72 bp | CTTCCCAGCAACATTTACCCCTGGTGTTTGGTTGTTTaGAGTGTTTTTGAGACAAGGTCTCTAGCTGTCTTG | + |
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Preference number: 4 (lower is better) Translates to: LPSNIYPWCLVV*SVFETRSLAVL Trigger: CAAGACAGCTAGAGACCTTGTCTCAAAAACACTCAAAACAACCAAACACCAGGGGTAAATGTTGCTGGGAAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020576.8 |
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| CDS-3UTR CCA 90 bp | GACACTCTGGCAGTTTCCAGAAACCTAACATGGGCATGCCCTATATTACTTTGTTGGCAGGCCTTAAGTTaGGCTTCTAGTCTTTCAAAA | + |
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Preference number: 4 (lower is better) Translates to: DTLAVSRNLTWACPILLCWQALS*ASSLSK Trigger: TTTTGAAAGACTAGAAGCCCAACTTAAGGCCTGCCA...ACAAAGTAATATAGGGCATGCCCATGTTAGGTTTCTGGAAACTGCCAGAGTGTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020576.8 |
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| CDS-3UTR CCA 90 bp | GGTCACATTGCTTGTTGTTCTGCATGGGCTTATGCAACTTTAAATAAGCTACAGAATATGATCCTGCAGTaGCAGGCCTTAAGTTGGGCT | + |
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Preference number: 4 (lower is better) Translates to: GHIACCSAWAYATLNKLQNMILQ*QALSWA Trigger: AGCCCAACTTAAGGCCTGCCACTGCAGGATCATATT...CTGTAGCTTATTTAAAGTTGCATAAGCCCATGCAGAACAACAAGCAATGTGACC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020576.8 |
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| CDS-3UTR CCA 90 bp | GGTCACATTGCTTGTTGTTCTGCATGGGCTTATGCAACTTTAAATAAGCTACAGGGTCTCAGGAATCGTTaGGAGGTGAGTTATTCTATA | + |
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Preference number: 4 (lower is better) Translates to: GHIACCSAWAYATLNKLQGLRNR*EVSYSI Trigger: TATAGAATAACTCACCTCCCAACGATTCCTGAGACC...CTGTAGCTTATTTAAAGTTGCATAAGCCCATGCAGAACAACAAGCAATGTGACC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020576.8 |
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| CDS-3UTR TCA 90 bp | GGTCACATTGCTTGTTGTTCTGCATGGGCTTATGCAACTTTAAATAAGCTACAGACCGTGAACCTATACTaGCTTATTCGGATCAAATCA | + |
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Preference number: 4 (lower is better) Translates to: GHIACCSAWAYATLNKLQTVNLY*LIRIKS Trigger: TGATTTGATCCGAATAAGTCAGTATAGGTTCACGGT...CTGTAGCTTATTTAAAGTTGCATAAGCCCATGCAGAACAACAAGCAATGTGACC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020576.8 |
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| 3UTR CAA 72 bp | GGTTTACAGAGGTTAAGGATAAAATACACCCGTTCTTaGGTTTATTGTTCAGCTTCTCAATGGATAATTTTC | + |
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Preference number: 4 (lower is better) Translates to: GLQRLRIKYTRS*VYCSASQWIIF Trigger: GAAAATTATCCATTGAGAAGCTGAACAATAAACCAAAGAACGGGTGTATTTTATCCTTAACCTCTGTAAACC 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020576.8 |
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| CDS-3UTR CAA 90 bp | CGTAGGAAACTCAGGTCAGAGTGGCAGAAAGACTTGAGGGACCGTTTTTGCTGCTGGTCTCAGGAATCGTaGGGAGGTGAGTTATTCTAT | + |
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Preference number: 5 (lower is better) Translates to: RRKLRSEWQKDLRDRFCCWSQES*GGELFY Trigger: ATAGAATAACTCACCTCCCAACGATTCCTGAGACCA...GCAGCAAAAACGGTCCCTCAAGTCTTTCTGCCACTCTGACCTGAGTTTCCTACG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020576.8 |
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| CDS CCA 90 bp | GGCTTTGCCTTAGAAAATATGATCCTGCAGTGGCAGGCCTTAAGTTaGGCTTCTAGTCTTTCAAAATTCAGATCGTTTCTCCTCTCAAAT | + |
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Preference number: 5 (lower is better) Translates to: GFALENMILQWQALS*ASSLSKFRSFLLSN Trigger: ATTTGAGAGGAGAAACGATCTGAATTTTGAAAGACTAGAAGCCCAACTTAAGGCCTGCCACTGCAGGATCATATTTTCTAAGGCAAAGCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020576.8 |
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| CDS CCA 72 bp | TCTACTCCTTCTGTTAACTCTACGTATTTCAGTGCTTaGATCTCCAACGCAAGGATAGATAGCGCCAGCACA | + |
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Preference number: 6 (lower is better) Translates to: STPSVNSTYFSA*ISNARIDSAST Trigger: TGTGCTGGCGCTATCTATCCTTGCGTTGGAGATCCAAGCACTGAAATACGTAGAGTTAACAGAAGGAGTAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020576.8 |
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| CDS CCA 72 bp | TTAGAAAATATGATCCTGCAGTGGCAGGCCTTAAGTTaGGCTTCTAGTCTTTCAAAATTCAGATCGTTTCTC | + |
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Preference number: 6 (lower is better) Translates to: LENMILQWQALS*ASSLSKFRSFL Trigger: GAGAAACGATCTGAATTTTGAAAGACTAGAAGCCCAACTTAAGGCCTGCCACTGCAGGATCATATTTTCTAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020576.8 |
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