Pregenerated sensors for CCNE2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028212Ensembl transcript IDs: ENSMUST00000029866.16, ENSMUST00000108324.4, ENSMUST00000170901.8
Found 70 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | CAACCTTTCTATCAAGTAAAACCCCCGAGTAGAAGAAGCCAAAGCATTTATATCCACAGTTTAAACATTTaGTTCAGTGCCTTACTGATT | + |
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Preference number: 2 (lower is better) Translates to: QPFYQVKPPSRRSQSIYIHSLNI*FSALLI Trigger: AATCAGTAAGGCACTGAACCAAATGTTTAAACTGTG...GATATAAATGCTTTGGCTTCTTCTACTCGGGGGTTTTACTTGATAGAAAGGTTG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000029866.16 ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| 3UTR-3UTR CCA 90 bp | TTTAAGATCAAAGCCATTGGCCAAACAGAATTGAATGCAAGCAACCCTGAAGAACACAGTTTAAACATTTaGTTCAGTGCCTTACTGATT | + |
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Preference number: 2 (lower is better) Translates to: FKIKAIGQTELNASNPEEHSLNI*FSALLI Trigger: AATCAGTAAGGCACTGAACCAAATGTTTAAACTGTG...TTCTTCAGGGTTGCTTGCATTCAATTCTGTTTGGCCAATGGCTTTGATCTTAAA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029866.16 ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| 3UTR TCA 72 bp | AGCCATTGGCCAAACAGAATTGAATGCAAGCAACCCTaGAGAAGTATTACAGCTGGCAGCACAGAGAAGGAA | + |
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Preference number: 3 (lower is better) Translates to: SHWPNRIECKQP*RSITAGSTEKE Trigger: TTCCTTCTCTGTGCTGCCAGCTGTAATACTTCTTCAGGGTTGCTTGCATTCAATTCTGTTTGGCCAATGGCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029866.16 ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| 3UTR-3UTR CAA 90 bp | TTTAAGATCAAAGCCATTGGCCAAACAGAATTGAATGCAAGCAACCCTGAAGAATTCCATCCACTATCCTaGGGAGTGAAGTCACCTTTG | + |
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Preference number: 3 (lower is better) Translates to: FKIKAIGQTELNASNPEEFHPLS*GVKSPL Trigger: CAAAGGTGACTTCACTCCCAAGGATAGTGGATGGAA...TTCTTCAGGGTTGCTTGCATTCAATTCTGTTTGGCCAATGGCTTTGATCTTAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029866.16 ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| 3UTR CCA 72 bp | GTAACAAACAGAAACAACTGCTATAGCTTAAATTGTTaGCTTCCATCCACTATCCTTGGGAGTGAAGTCACC | + |
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Preference number: 3 (lower is better) Translates to: VTNRNNCYSLNC*LPSTILGSEVT Trigger: GGTGACTTCACTCCCAAGGATAGTGGATGGAAGCCAACAATTTAAGCTATAGCAGTTGTTTCTGTTTGTTAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029866.16 ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| 3UTR-3UTR CAA 90 bp | TTTAAGATCAAAGCCATTGGCCAAACAGAATTGAATGCAAGCAACCCTGAAGAAGCACAGTTTAAACATTaGGTTCAGTGCCTTACTGAT | + |
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Preference number: 3 (lower is better) Translates to: FKIKAIGQTELNASNPEEAQFKH*VQCLTD Trigger: ATCAGTAAGGCACTGAACCAAATGTTTAAACTGTGC...TTCTTCAGGGTTGCTTGCATTCAATTCTGTTTGGCCAATGGCTTTGATCTTAAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029866.16 ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| 3UTR-3UTR CAA 90 bp | CAACCTTTCTATCAAGTAAAACCCCCGAGTAGAAGAAGCCAAAGCATTTATATCGCACAGTTTAAACATTaGGTTCAGTGCCTTACTGAT | + |
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Preference number: 3 (lower is better) Translates to: QPFYQVKPPSRRSQSIYIAQFKH*VQCLTD Trigger: ATCAGTAAGGCACTGAACCAAATGTTTAAACTGTGC...GATATAAATGCTTTGGCTTCTTCTACTCGGGGGTTTTACTTGATAGAAAGGTTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000029866.16 ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| CDS-3UTR CCA 90 bp | TGGCTTCCATCCACTATCCTTGGGAGTGAAGTCACCTTTGTAAACAAGTTCTCTTGCGGAGAGTCTGGCTaGTTGGGCTGGGCATGTTGC | + |
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Preference number: 4 (lower is better) Translates to: WLPSTILGSEVTFVNKFSCGESG*LGWACC Trigger: GCAACATGCCCAGCCCAACCAGCCAGACTCTCCGCA...AGAGAACTTGTTTACAAAGGTGACTTCACTCCCAAGGATAGTGGATGGAAGCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029866.16 ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| CDS-3UTR CCA 90 bp | TTTAAGATCAAAGCCATTGGCCAAACAGAATTGAATGCAAGCAACCCTGAAGAATGCGGAGAGTCTGGCTaGTTGGGCTGGGCATGTTGC | + |
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Preference number: 4 (lower is better) Translates to: FKIKAIGQTELNASNPEECGESG*LGWACC Trigger: GCAACATGCCCAGCCCAACCAGCCAGACTCTCCGCA...TTCTTCAGGGTTGCTTGCATTCAATTCTGTTTGGCCAATGGCTTTGATCTTAAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029866.16 ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| CDS-3UTR CCA 90 bp | CAACCTTTCTATCAAGTAAAACCCCCGAGTAGAAGAAGCCAAAGCATTTATATCTGCGGAGAGTCTGGCTaGTTGGGCTGGGCATGTTGC | + |
|
Preference number: 4 (lower is better) Translates to: QPFYQVKPPSRRSQSIYICGESG*LGWACC Trigger: GCAACATGCCCAGCCCAACCAGCCAGACTCTCCGCA...GATATAAATGCTTTGGCTTCTTCTACTCGGGGGTTTTACTTGATAGAAAGGTTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000029866.16 ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| CDS-3UTR TCA 90 bp | TGGCTTCCATCCACTATCCTTGGGAGTGAAGTCACCTTTGTAAACAAGTTCTCTTCCATTACACACTGGTaGCAGCTGCCCTCCTTTTCT | + |
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Preference number: 4 (lower is better) Translates to: WLPSTILGSEVTFVNKFSSITHW*QLPSFS Trigger: AGAAAAGGAGGGCAGCTGTCACCAGTGTGTAATGGA...AGAGAACTTGTTTACAAAGGTGACTTCACTCCCAAGGATAGTGGATGGAAGCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029866.16 ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| CDS-3UTR GCA 90 bp | TGGCTTCCATCCACTATCCTTGGGAGTGAAGTCACCTTTGTAAACAAGTTCTCTTTGGGCTGGGCATGTTaGTTAGCTTGTAAACGGCTG | + |
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Preference number: 4 (lower is better) Translates to: WLPSTILGSEVTFVNKFSLGWAC*LACKRL Trigger: CAGCCGTTTACAAGCTAAGCAACATGCCCAGCCCAA...AGAGAACTTGTTTACAAAGGTGACTTCACTCCCAAGGATAGTGGATGGAAGCCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029866.16 |
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| CDS-3UTR GCA 90 bp | TGGCTTCCATCCACTATCCTTGGGAGTGAAGTCACCTTTGTAAACAAGTTCTCTATTATCTGGGTTTCTTaGGGAGAGTCTGGCTGGTTG | + |
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Preference number: 4 (lower is better) Translates to: WLPSTILGSEVTFVNKFSIIWVS*GESGWL Trigger: CAACCAGCCAGACTCTCCGCAAGAAACCCAGATAAT...AGAGAACTTGTTTACAAAGGTGACTTCACTCCCAAGGATAGTGGATGGAAGCCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029866.16 ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| CDS-3UTR GCA 90 bp | TGGCTTCCATCCACTATCCTTGGGAGTGAAGTCACCTTTGTAAACAAGTTCTCTTTGGGCTGGGCATGTTaGTTAGCTTGTAAACGGCTA | + |
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Preference number: 4 (lower is better) Translates to: WLPSTILGSEVTFVNKFSLGWAC*LACKRL Trigger: TAGCCGTTTACAAGCTAAGCAACATGCCCAGCCCAA...AGAGAACTTGTTTACAAAGGTGACTTCACTCCCAAGGATAGTGGATGGAAGCCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| CDS-3UTR TCA 90 bp | TGGCTTCCATCCACTATCCTTGGGAGTGAAGTCACCTTTGTAAACAAGTTCTCTGCTGAGCTATCTGGATaGACGTCTCCTGAGAATATT | + |
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Preference number: 4 (lower is better) Translates to: WLPSTILGSEVTFVNKFSAELSG*TSPENI Trigger: AATATTCTCAGGAGACGTTCATCCAGATAGCTCAGC...AGAGAACTTGTTTACAAAGGTGACTTCACTCCCAAGGATAGTGGATGGAAGCCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029866.16 ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| CDS-3UTR CCA 90 bp | TGGCTTCCATCCACTATCCTTGGGAGTGAAGTCACCTTTGTAAACAAGTTCTCTTCCAGACAGTACAGGTaGCCAACAATTCCTAATCTC | + |
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Preference number: 4 (lower is better) Translates to: WLPSTILGSEVTFVNKFSSRQYR*PTIPNL Trigger: GAGATTAGGAATTGTTGGCCACCTGTACTGTCTGGA...AGAGAACTTGTTTACAAAGGTGACTTCACTCCCAAGGATAGTGGATGGAAGCCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029866.16 ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| CDS-3UTR TCA 90 bp | TGGCTTCCATCCACTATCCTTGGGAGTGAAGTCACCTTTGTAAACAAGTTCTCTTTTCTCTTCTTGGCCTaGATTATCTGGGTTTCTTGC | + |
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Preference number: 4 (lower is better) Translates to: WLPSTILGSEVTFVNKFSFLFLA*IIWVSC Trigger: GCAAGAAACCCAGATAATTCAGGCCAAGAAGAGAAA...AGAGAACTTGTTTACAAAGGTGACTTCACTCCCAAGGATAGTGGATGGAAGCCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029866.16 ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| CDS-3UTR TCA 90 bp | TGGCTTCCATCCACTATCCTTGGGAGTGAAGTCACCTTTGTAAACAAGTTCTCTGGAAGCAATGAACAATaGGGTAATCCCAATGAGTTG | + |
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Preference number: 4 (lower is better) Translates to: WLPSTILGSEVTFVNKFSGSNEQ*GNPNEL Trigger: CAACTCATTGGGATTACCTCATTGTTCATTGCTTCC...AGAGAACTTGTTTACAAAGGTGACTTCACTCCCAAGGATAGTGGATGGAAGCCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029866.16 ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| CDS-3UTR TCA 90 bp | TTTAAGATCAAAGCCATTGGCCAAACAGAATTGAATGCAAGCAACCCTGAAGAATCCATTACACACTGGTaGCAGCTGCCCTCCTTTTCT | + |
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Preference number: 4 (lower is better) Translates to: FKIKAIGQTELNASNPEESITHW*QLPSFS Trigger: AGAAAAGGAGGGCAGCTGTCACCAGTGTGTAATGGA...TTCTTCAGGGTTGCTTGCATTCAATTCTGTTTGGCCAATGGCTTTGATCTTAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029866.16 ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| CDS-3UTR TCA 90 bp | CAACCTTTCTATCAAGTAAAACCCCCGAGTAGAAGAAGCCAAAGCATTTATATCTCCATTACACACTGGTaGCAGCTGCCCTCCTTTTCT | + |
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Preference number: 4 (lower is better) Translates to: QPFYQVKPPSRRSQSIYISITHW*QLPSFS Trigger: AGAAAAGGAGGGCAGCTGTCACCAGTGTGTAATGGA...GATATAAATGCTTTGGCTTCTTCTACTCGGGGGTTTTACTTGATAGAAAGGTTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000029866.16 ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| CDS-3UTR GCA 90 bp | TGGCTTCCATCCACTATCCTTGGGAGTGAAGTCACCTTTGTAAACAAGTTCTCTAGTCGATGGCTAGAATaGACAGATCTAAAAGCTGAG | + |
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Preference number: 4 (lower is better) Translates to: WLPSTILGSEVTFVNKFSSRWLE*TDLKAE Trigger: CTCAGCTTTTAGATCTGTGCATTCTAGCCATCGACT...AGAGAACTTGTTTACAAAGGTGACTTCACTCCCAAGGATAGTGGATGGAAGCCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029866.16 ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| CDS-3UTR TCA 90 bp | TGGCTTCCATCCACTATCCTTGGGAGTGAAGTCACCTTTGTAAACAAGTTCTCTTCAGAATGCAGAACTTaGAAATGTTTGTCATGCACG | + |
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Preference number: 4 (lower is better) Translates to: WLPSTILGSEVTFVNKFSSECRT*KCLSCT Trigger: CGTGCATGACAAACATTTTCAAGTTCTGCATTCTGA...AGAGAACTTGTTTACAAAGGTGACTTCACTCCCAAGGATAGTGGATGGAAGCCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029866.16 ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| CDS-3UTR GCA 90 bp | TTTAAGATCAAAGCCATTGGCCAAACAGAATTGAATGCAAGCAACCCTGAAGAAATTATCTGGGTTTCTTaGGGAGAGTCTGGCTGGTTG | + |
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Preference number: 4 (lower is better) Translates to: FKIKAIGQTELNASNPEEIIWVS*GESGWL Trigger: CAACCAGCCAGACTCTCCGCAAGAAACCCAGATAAT...TTCTTCAGGGTTGCTTGCATTCAATTCTGTTTGGCCAATGGCTTTGATCTTAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029866.16 ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| CDS-3UTR GCA 90 bp | TTTAAGATCAAAGCCATTGGCCAAACAGAATTGAATGCAAGCAACCCTGAAGAATTGGGCTGGGCATGTTaGTTAGCTTGTAAACGGCTA | + |
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Preference number: 4 (lower is better) Translates to: FKIKAIGQTELNASNPEELGWAC*LACKRL Trigger: TAGCCGTTTACAAGCTAAGCAACATGCCCAGCCCAA...TTCTTCAGGGTTGCTTGCATTCAATTCTGTTTGGCCAATGGCTTTGATCTTAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| CDS-3UTR CCA 90 bp | TGGCTTCCATCCACTATCCTTGGGAGTGAAGTCACCTTTGTAAACAAGTTCTCTAGTCTTCAGCTTCACTaGACTCACACTTTTTACAAC | + |
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Preference number: 4 (lower is better) Translates to: WLPSTILGSEVTFVNKFSSLQLH*THTFYN Trigger: GTTGTAAAAAGTGTGAGTCCAGTGAAGCTGAAGACT...AGAGAACTTGTTTACAAAGGTGACTTCACTCCCAAGGATAGTGGATGGAAGCCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000029866.16 ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| CDS-3UTR CCA 90 bp | TGGCTTCCATCCACTATCCTTGGGAGTGAAGTCACCTTTGTAAACAAGTTCTCTTTCAGTACTCTTTGGTaGTGTCATAATGCCTCCATT | + |
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Preference number: 4 (lower is better) Translates to: WLPSTILGSEVTFVNKFSFSTLW*CHNASI Trigger: AATGGAGGCATTATGACACCACCAAAGAGTACTGAA...AGAGAACTTGTTTACAAAGGTGACTTCACTCCCAAGGATAGTGGATGGAAGCCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029866.16 ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| CDS-3UTR CCA 90 bp | TGGCTTCCATCCACTATCCTTGGGAGTGAAGTCACCTTTGTAAACAAGTTCTCTTTTTTCAGTACTCTTTaGTGGTGTCATAATGCCTCC | + |
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Preference number: 4 (lower is better) Translates to: WLPSTILGSEVTFVNKFSFFSTL*WCHNAS Trigger: GGAGGCATTATGACACCACCAAAGAGTACTGAAAAA...AGAGAACTTGTTTACAAAGGTGACTTCACTCCCAAGGATAGTGGATGGAAGCCA 42% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 3 transcripts: ENSMUST00000029866.16 ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| CDS-3UTR TCA 90 bp | CAACCTTTCTATCAAGTAAAACCCCCGAGTAGAAGAAGCCAAAGCATTTATATCGCTGAGCTATCTGGATaGACGTCTCCTGAGAATATT | + |
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Preference number: 4 (lower is better) Translates to: QPFYQVKPPSRRSQSIYIAELSG*TSPENI Trigger: AATATTCTCAGGAGACGTTCATCCAGATAGCTCAGC...GATATAAATGCTTTGGCTTCTTCTACTCGGGGGTTTTACTTGATAGAAAGGTTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000029866.16 ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| CDS-3UTR TCA 90 bp | TGGCTTCCATCCACTATCCTTGGGAGTGAAGTCACCTTTGTAAACAAGTTCTCTGCCAGAATTCTGTATTaGAATTCTAAAGAGTCGATG | + |
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Preference number: 4 (lower is better) Translates to: WLPSTILGSEVTFVNKFSARILY*NSKESM Trigger: CATCGACTCTTTAGAATTTCAATACAGAATTCTGGC...AGAGAACTTGTTTACAAAGGTGACTTCACTCCCAAGGATAGTGGATGGAAGCCA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029866.16 ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| CDS-3UTR CCA 90 bp | TGGCTTCCATCCACTATCCTTGGGAGTGAAGTCACCTTTGTAAACAAGTTCTCTCTGTTTTTCTCTTCTTaGCCTGAATTATCTGGGTTT | + |
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Preference number: 4 (lower is better) Translates to: WLPSTILGSEVTFVNKFSLFFSS*PELSGF Trigger: AAACCCAGATAATTCAGGCCAAGAAGAGAAAAACAG...AGAGAACTTGTTTACAAAGGTGACTTCACTCCCAAGGATAGTGGATGGAAGCCA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000029866.16 ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| CDS-3UTR TCA 90 bp | CAACCTTTCTATCAAGTAAAACCCCCGAGTAGAAGAAGCCAAAGCATTTATATCTTTCTCTTCTTGGCCTaGATTATCTGGGTTTCTTGC | + |
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Preference number: 4 (lower is better) Translates to: QPFYQVKPPSRRSQSIYIFLFLA*IIWVSC Trigger: GCAAGAAACCCAGATAATTCAGGCCAAGAAGAGAAA...GATATAAATGCTTTGGCTTCTTCTACTCGGGGGTTTTACTTGATAGAAAGGTTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000029866.16 ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| CDS-3UTR TCA 90 bp | CAACCTTTCTATCAAGTAAAACCCCCGAGTAGAAGAAGCCAAAGCATTTATATCGGAAGCAATGAACAATaGGGTAATCCCAATGAGTTG | + |
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Preference number: 4 (lower is better) Translates to: QPFYQVKPPSRRSQSIYIGSNEQ*GNPNEL Trigger: CAACTCATTGGGATTACCTCATTGTTCATTGCTTCC...GATATAAATGCTTTGGCTTCTTCTACTCGGGGGTTTTACTTGATAGAAAGGTTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000029866.16 ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| CDS-3UTR TCA 90 bp | TTTAAGATCAAAGCCATTGGCCAAACAGAATTGAATGCAAGCAACCCTGAAGAAGGAAGCAATGAACAATaGGGTAATCCCAATGAGTTG | + |
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Preference number: 4 (lower is better) Translates to: FKIKAIGQTELNASNPEEGSNEQ*GNPNEL Trigger: CAACTCATTGGGATTACCTCATTGTTCATTGCTTCC...TTCTTCAGGGTTGCTTGCATTCAATTCTGTTTGGCCAATGGCTTTGATCTTAAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029866.16 ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| CDS-3UTR TCA 90 bp | CAACCTTTCTATCAAGTAAAACCCCCGAGTAGAAGAAGCCAAAGCATTTATATCTCAGAATGCAGAACTTaGAAATGTTTGTCATGCACG | + |
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Preference number: 4 (lower is better) Translates to: QPFYQVKPPSRRSQSIYISECRT*KCLSCT Trigger: CGTGCATGACAAACATTTTCAAGTTCTGCATTCTGA...GATATAAATGCTTTGGCTTCTTCTACTCGGGGGTTTTACTTGATAGAAAGGTTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000029866.16 ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| CDS-3UTR TCA 90 bp | TTTAAGATCAAAGCCATTGGCCAAACAGAATTGAATGCAAGCAACCCTGAAGAATCAGAATGCAGAACTTaGAAATGTTTGTCATGCACG | + |
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Preference number: 4 (lower is better) Translates to: FKIKAIGQTELNASNPEESECRT*KCLSCT Trigger: CGTGCATGACAAACATTTTCAAGTTCTGCATTCTGA...TTCTTCAGGGTTGCTTGCATTCAATTCTGTTTGGCCAATGGCTTTGATCTTAAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029866.16 ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| CDS-3UTR CCA 90 bp | CAACCTTTCTATCAAGTAAAACCCCCGAGTAGAAGAAGCCAAAGCATTTATATCAGTCTTCAGCTTCACTaGACTCACACTTTTTACAAC | + |
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Preference number: 4 (lower is better) Translates to: QPFYQVKPPSRRSQSIYISLQLH*THTFYN Trigger: GTTGTAAAAAGTGTGAGTCCAGTGAAGCTGAAGACT...GATATAAATGCTTTGGCTTCTTCTACTCGGGGGTTTTACTTGATAGAAAGGTTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENSMUST00000029866.16 ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| CDS-3UTR CCA 90 bp | CAACCTTTCTATCAAGTAAAACCCCCGAGTAGAAGAAGCCAAAGCATTTATATCTTCAGTACTCTTTGGTaGTGTCATAATGCCTCCATT | + |
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Preference number: 4 (lower is better) Translates to: QPFYQVKPPSRRSQSIYIFSTLW*CHNASI Trigger: AATGGAGGCATTATGACACCACCAAAGAGTACTGAA...GATATAAATGCTTTGGCTTCTTCTACTCGGGGGTTTTACTTGATAGAAAGGTTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000029866.16 ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| CDS-3UTR CCA 90 bp | TTTAAGATCAAAGCCATTGGCCAAACAGAATTGAATGCAAGCAACCCTGAAGAATTCAGTACTCTTTGGTaGTGTCATAATGCCTCCATT | + |
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Preference number: 4 (lower is better) Translates to: FKIKAIGQTELNASNPEEFSTLW*CHNASI Trigger: AATGGAGGCATTATGACACCACCAAAGAGTACTGAA...TTCTTCAGGGTTGCTTGCATTCAATTCTGTTTGGCCAATGGCTTTGATCTTAAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029866.16 ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| CDS-3UTR CCA 90 bp | CAACCTTTCTATCAAGTAAAACCCCCGAGTAGAAGAAGCCAAAGCATTTATATCTTTTTCAGTACTCTTTaGTGGTGTCATAATGCCTCC | + |
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Preference number: 4 (lower is better) Translates to: QPFYQVKPPSRRSQSIYIFFSTL*WCHNAS Trigger: GGAGGCATTATGACACCACCAAAGAGTACTGAAAAA...GATATAAATGCTTTGGCTTCTTCTACTCGGGGGTTTTACTTGATAGAAAGGTTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENSMUST00000029866.16 ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| CDS-3UTR CCA 90 bp | TTTAAGATCAAAGCCATTGGCCAAACAGAATTGAATGCAAGCAACCCTGAAGAATCAGTGTTTTCCTGGTaGTTTTTCAGTACTCTTTGG | + |
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Preference number: 4 (lower is better) Translates to: FKIKAIGQTELNASNPEESVFSW*FFSTLW Trigger: CCAAAGAGTACTGAAAAACCACCAGGAAAACACTGA...TTCTTCAGGGTTGCTTGCATTCAATTCTGTTTGGCCAATGGCTTTGATCTTAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000029866.16 ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| 3UTR CAA 72 bp | TTCTGTTTTAAGATCAAAGCCATTGGCCAAACAGAATaGAATGCAAGCAACCCTGAAGAAGTATTACAGCTG | + |
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Preference number: 4 (lower is better) Translates to: FCFKIKAIGQTE*NASNPEEVLQL Trigger: CAGCTGTAATACTTCTTCAGGGTTGCTTGCATTCAATTCTGTTTGGCCAATGGCTTTGATCTTAAAACAGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029866.16 ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| CDS-3UTR TCA 90 bp | TTTAAGATCAAAGCCATTGGCCAAACAGAATTGAATGCAAGCAACCCTGAAGAAGCCAGAATTCTGTATTaGAATTCTAAAGAGTCGATG | + |
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Preference number: 4 (lower is better) Translates to: FKIKAIGQTELNASNPEEARILY*NSKESM Trigger: CATCGACTCTTTAGAATTTCAATACAGAATTCTGGC...TTCTTCAGGGTTGCTTGCATTCAATTCTGTTTGGCCAATGGCTTTGATCTTAAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029866.16 ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| CDS-3UTR TCA 90 bp | CAACCTTTCTATCAAGTAAAACCCCCGAGTAGAAGAAGCCAAAGCATTTATATCGCCAGAATTCTGTATTaGAATTCTAAAGAGTCGATG | + |
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Preference number: 4 (lower is better) Translates to: QPFYQVKPPSRRSQSIYIARILY*NSKESM Trigger: CATCGACTCTTTAGAATTTCAATACAGAATTCTGGC...GATATAAATGCTTTGGCTTCTTCTACTCGGGGGTTTTACTTGATAGAAAGGTTG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000029866.16 ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| CDS-3UTR CCA 90 bp | TTTAAGATCAAAGCCATTGGCCAAACAGAATTGAATGCAAGCAACCCTGAAGAACTGTTTTTCTCTTCTTaGCCTGAATTATCTGGGTTT | + |
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Preference number: 4 (lower is better) Translates to: FKIKAIGQTELNASNPEELFFSS*PELSGF Trigger: AAACCCAGATAATTCAGGCCAAGAAGAGAAAAACAG...TTCTTCAGGGTTGCTTGCATTCAATTCTGTTTGGCCAATGGCTTTGATCTTAAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000029866.16 ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| CDS-3UTR GCA 90 bp | TTTAAGATCAAAGCCATTGGCCAAACAGAATTGAATGCAAGCAACCCTGAAGAATTTTGTAACATGTTTTaGCAAACCTCCTGTGAACAT | + |
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Preference number: 4 (lower is better) Translates to: FKIKAIGQTELNASNPEEFCNMF*QTSCEH Trigger: ATGTTCACAGGAGGTTTGGCAAAACATGTTACAAAA...TTCTTCAGGGTTGCTTGCATTCAATTCTGTTTGGCCAATGGCTTTGATCTTAAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000029866.16 ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| CDS-3UTR CAA 90 bp | TGGCTTCCATCCACTATCCTTGGGAGTGAAGTCACCTTTGTAAACAAGTTCTCTGGAGAGTCTGGCTGGTaGGGCTGGGCATGTTGCTTA | + |
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Preference number: 5 (lower is better) Translates to: WLPSTILGSEVTFVNKFSGESGW*GWACCL Trigger: TAAGCAACATGCCCAGCCCAACCAGCCAGACTCTCC...AGAGAACTTGTTTACAAAGGTGACTTCACTCCCAAGGATAGTGGATGGAAGCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029866.16 ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| CDS-3UTR CAA 90 bp | CAACCTTTCTATCAAGTAAAACCCCCGAGTAGAAGAAGCCAAAGCATTTATATCGGAGAGTCTGGCTGGTaGGGCTGGGCATGTTGCTTA | + |
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Preference number: 5 (lower is better) Translates to: QPFYQVKPPSRRSQSIYIGESGW*GWACCL Trigger: TAAGCAACATGCCCAGCCCAACCAGCCAGACTCTCC...GATATAAATGCTTTGGCTTCTTCTACTCGGGGGTTTTACTTGATAGAAAGGTTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000029866.16 ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| CDS-3UTR CAA 90 bp | TGGCTTCCATCCACTATCCTTGGGAGTGAAGTCACCTTTGTAAACAAGTTCTCTAATTATCTGGGTTTCTaGCGGAGAGTCTGGCTGGTT | + |
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Preference number: 5 (lower is better) Translates to: WLPSTILGSEVTFVNKFSNYLGF*RRVWLV Trigger: AACCAGCCAGACTCTCCGCAAGAAACCCAGATAATT...AGAGAACTTGTTTACAAAGGTGACTTCACTCCCAAGGATAGTGGATGGAAGCCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029866.16 ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| CDS-3UTR CAA 90 bp | TGGCTTCCATCCACTATCCTTGGGAGTGAAGTCACCTTTGTAAACAAGTTCTCTGCCAGTCTAAAAGTATaGACCTCATCTGTGGTTCCA | + |
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Preference number: 5 (lower is better) Translates to: WLPSTILGSEVTFVNKFSASLKV*TSSVVP Trigger: TGGAACCACAGATGAGGTCAATACTTTTAGACTGGC...AGAGAACTTGTTTACAAAGGTGACTTCACTCCCAAGGATAGTGGATGGAAGCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029866.16 ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| CDS-3UTR CAA 90 bp | TGGCTTCCATCCACTATCCTTGGGAGTGAAGTCACCTTTGTAAACAAGTTCTCTGACGTAAGCAAACTCTaGGAGTTTAGGAGCGTAGAT | + |
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Preference number: 5 (lower is better) Translates to: WLPSTILGSEVTFVNKFSDVSKL*EFRSVD Trigger: ATCTACGCTCCTAAACTCCAAGAGTTTGCTTACGTC...AGAGAACTTGTTTACAAAGGTGACTTCACTCCCAAGGATAGTGGATGGAAGCCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029866.16 ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| CDS TCA 90 bp | TTCAGTACTCTTTGGTGGTGTCATAATGCCTCCATTACACACTGGTaGCAGCTGCCCTCCTTTTCTGTAGATGTTCACATAGTTTACTTC | + |
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Preference number: 5 (lower is better) Translates to: FSTLWWCHNASITHW*QLPSFSVDVHIVYF Trigger: GAAGTAAACTATGTGAACATCTACAGAAAAGGAGGGCAGCTGTCACCAGTGTGTAATGGAGGCATTATGACACCACCAAAGAGTACTGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029866.16 ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| CDS-3UTR CAA 90 bp | CAACCTTTCTATCAAGTAAAACCCCCGAGTAGAAGAAGCCAAAGCATTTATATCAATTATCTGGGTTTCTaGCGGAGAGTCTGGCTGGTT | + |
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Preference number: 5 (lower is better) Translates to: QPFYQVKPPSRRSQSIYINYLGF*RRVWLV Trigger: AACCAGCCAGACTCTCCGCAAGAAACCCAGATAATT...GATATAAATGCTTTGGCTTCTTCTACTCGGGGGTTTTACTTGATAGAAAGGTTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000029866.16 ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| CDS-3UTR CAA 90 bp | CAACCTTTCTATCAAGTAAAACCCCCGAGTAGAAGAAGCCAAAGCATTTATATCGCCAGTCTAAAAGTATaGACCTCATCTGTGGTTCCA | + |
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Preference number: 5 (lower is better) Translates to: QPFYQVKPPSRRSQSIYIASLKV*TSSVVP Trigger: TGGAACCACAGATGAGGTCAATACTTTTAGACTGGC...GATATAAATGCTTTGGCTTCTTCTACTCGGGGGTTTTACTTGATAGAAAGGTTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000029866.16 ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| CDS-3UTR CAA 90 bp | TTTAAGATCAAAGCCATTGGCCAAACAGAATTGAATGCAAGCAACCCTGAAGAAGCCAGTCTAAAAGTATaGACCTCATCTGTGGTTCCA | + |
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Preference number: 5 (lower is better) Translates to: FKIKAIGQTELNASNPEEASLKV*TSSVVP Trigger: TGGAACCACAGATGAGGTCAATACTTTTAGACTGGC...TTCTTCAGGGTTGCTTGCATTCAATTCTGTTTGGCCAATGGCTTTGATCTTAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029866.16 ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| CDS-3UTR CAA 90 bp | TTTAAGATCAAAGCCATTGGCCAAACAGAATTGAATGCAAGCAACCCTGAAGAAGACGTAAGCAAACTCTaGGAGTTTAGGAGCGTAGAT | + |
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Preference number: 5 (lower is better) Translates to: FKIKAIGQTELNASNPEEDVSKL*EFRSVD Trigger: ATCTACGCTCCTAAACTCCAAGAGTTTGCTTACGTC...TTCTTCAGGGTTGCTTGCATTCAATTCTGTTTGGCCAATGGCTTTGATCTTAAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029866.16 ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| CDS-3UTR CAA 90 bp | TTTAAGATCAAAGCCATTGGCCAAACAGAATTGAATGCAAGCAACCCTGAAGAAGTGTGTGTCTGGATATaGTGTCTATCTTCCATGGGT | + |
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Preference number: 5 (lower is better) Translates to: FKIKAIGQTELNASNPEEVCVWI*CLSSMG Trigger: ACCCATGGAAGATAGACACAATATCCAGACACACAC...TTCTTCAGGGTTGCTTGCATTCAATTCTGTTTGGCCAATGGCTTTGATCTTAAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029866.16 ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| CDS-3UTR CAA 90 bp | TTTAAGATCAAAGCCATTGGCCAAACAGAATTGAATGCAAGCAACCCTGAAGAAGTCAGAATGCAGAACTaGAAAATGTTTGTCATGCAC | + |
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Preference number: 5 (lower is better) Translates to: FKIKAIGQTELNASNPEEVRMQN*KMFVMH Trigger: GTGCATGACAAACATTTTCAAGTTCTGCATTCTGAC...TTCTTCAGGGTTGCTTGCATTCAATTCTGTTTGGCCAATGGCTTTGATCTTAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029866.16 ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| CDS-3UTR CAA 90 bp | TTTAAGATCAAAGCCATTGGCCAAACAGAATTGAATGCAAGCAACCCTGAAGAAGCAAAGCCAAATAATTaGTGTGTGTCTGGATATTGT | + |
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Preference number: 5 (lower is better) Translates to: FKIKAIGQTELNASNPEEAKPNN*CVSGYC Trigger: ACAATATCCAGACACACACAAATTATTTGGCTTTGC...TTCTTCAGGGTTGCTTGCATTCAATTCTGTTTGGCCAATGGCTTTGATCTTAAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029866.16 ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| CDS-3UTR CAA 90 bp | CAACCTTTCTATCAAGTAAAACCCCCGAGTAGAAGAAGCCAAAGCATTTATATCGCAAAGCCAAATAATTaGTGTGTGTCTGGATATTGT | + |
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Preference number: 5 (lower is better) Translates to: QPFYQVKPPSRRSQSIYIAKPNN*CVSGYC Trigger: ACAATATCCAGACACACACAAATTATTTGGCTTTGC...GATATAAATGCTTTGGCTTCTTCTACTCGGGGGTTTTACTTGATAGAAAGGTTG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000029866.16 ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| CDS TCA 90 bp | GAGTTTAGGAGCGTAGATTTCCTCAAGTTTGGAAGCAATGAACAATaGGGTAATCCCAATGAGTTGAAGCATATTTTTATTTACATCCTT | + |
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Preference number: 5 (lower is better) Translates to: EFRSVDFLKFGSNEQ*GNPNELKHIFIYIL Trigger: AAGGATGTAAATAAAAATATGCTTCAACTCATTGGGATTACCTCATTGTTCATTGCTTCCAAACTTGAGGAAATCTACGCTCCTAAACTC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000029866.16 ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| CDS CCA 72 bp | ATCTGGGTTTCTTGCGGAGAGTCTGGCTGGTTGGGCTaGGCATGTTGCTTAGCTTGTAAACGGCTGCGTCTT | + |
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Preference number: 6 (lower is better) Translates to: IWVSCGESGWLG*ACCLACKRLRL Trigger: AAGACGCAGCCGTTTACAAGCTAAGCAACATGCCCAGCCCAACCAGCCAGACTCTCCGCAAGAAACCCAGAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029866.16 |
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| CDS CCA 72 bp | ATCTGGGTTTCTTGCGGAGAGTCTGGCTGGTTGGGCTaGGCATGTTGCTTAGCTTGTAAACGGCTACTGCGT | + |
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Preference number: 6 (lower is better) Translates to: IWVSCGESGWLG*ACCLACKRLLR Trigger: ACGCAGTAGCCGTTTACAAGCTAAGCAACATGCCCAGCCCAACCAGCCAGACTCTCCGCAAGAAACCCAGAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| CDS CAA 90 bp | ATCCTGTGCTGTTTTTCTCTTCTTGGCCTGAATTATCTGGGTTTCTaGCGGAGAGTCTGGCTGGTTGGGCTGGGCATGTTGCTTAGCTTG | + |
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Preference number: 6 (lower is better) Translates to: ILCCFSLLGLNYLGF*RRVWLVGLGMLLSL Trigger: CAAGCTAAGCAACATGCCCAGCCCAACCAGCCAGACTCTCCGCAAGAAACCCAGATAATTCAGGCCAAGAAGAGAAAAACAGCACAGGAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000029866.16 ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| CDS TCA 72 bp | CTTTGGTGGTGTCATAATGCCTCCATTACACACTGGTaGCAGCTGCCCTCCTTTTCTGTAGATGTTCACATA | + |
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Preference number: 6 (lower is better) Translates to: LWWCHNASITHW*QLPSFSVDVHI Trigger: TATGTGAACATCTACAGAAAAGGAGGGCAGCTGTCACCAGTGTGTAATGGAGGCATTATGACACCACCAAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029866.16 ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| CDS CCA 72 bp | GATAATGCAAGGGCTGATTCCTCCAGACAGTACAGGTaGCCAACAATTCCTAATCTCATACTGATGCTTCTT | + |
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Preference number: 6 (lower is better) Translates to: DNARADSSRQYR*PTIPNLILMLL Trigger: AAGAAGCATCAGTATGAGATTAGGAATTGTTGGCCACCTGTACTGTCTGGAGGAATCAGCCCTTGCATTATC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029866.16 ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| CDS CAA 72 bp | TTCACTGCAAGCACCATCAGTGACGTAAGCAAACTCTaGGAGTTTAGGAGCGTAGATTTCCTCAAGTTTGGA | + |
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Preference number: 6 (lower is better) Translates to: FTASTISDVSKL*EFRSVDFLKFG Trigger: TCCAAACTTGAGGAAATCTACGCTCCTAAACTCCAAGAGTTTGCTTACGTCACTGATGGTGCTTGCAGTGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029866.16 ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| CDS CAA 90 bp | GATATCTACTTCACTGCAAGCACCATCAGTGACGTAAGCAAACTCTaGGAGTTTAGGAGCGTAGATTTCCTCAAGTTTGGAAGCAATGAA | + |
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Preference number: 6 (lower is better) Translates to: DIYFTASTISDVSKL*EFRSVDFLKFGSNE Trigger: TTCATTGCTTCCAAACTTGAGGAAATCTACGCTCCTAAACTCCAAGAGTTTGCTTACGTCACTGATGGTGCTTGCAGTGAAGTAGATATC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029866.16 ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| CDS CAA 72 bp | ATACTTCACAAACCTCTAAAAGCCAGTCTAAAAGTATaGACCTCATCTGTGGTTCCAGGTCAGAATGCAGAA | + |
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Preference number: 6 (lower is better) Translates to: ILHKPLKASLKV*TSSVVPGQNAE Trigger: TTCTGCATTCTGACCTGGAACCACAGATGAGGTCAATACTTTTAGACTGGCTTTTAGAGGTTTGTGAAGTAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000029866.16 ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| CDS CCA 72 bp | CAGCCAGAATTCTGTATTGAAATTCTAAAGAGTCGATaGCTAGAATGCACAGATCTAAAAGCTGAGCTATCT | + |
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Preference number: 6 (lower is better) Translates to: QPEFCIEILKSR*LECTDLKAELS Trigger: AGATAGCTCAGCTTTTAGATCTGTGCATTCTAGCCATCGACTCTTTAGAATTTCAATACAGAATTCTGGCTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029866.16 ENSMUST00000108324.4 ENSMUST00000170901.8 |
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| CDS TCA 72 bp | AGAAGAACCTTAGGAACATCTTTAACAGCATCAACTTaGAGAAAAAGATTCAACCAGGAGATGACTGTTACT | + |
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Preference number: 6 (lower is better) Translates to: RRTLGTSLTAST*RKRFNQEMTVT Trigger: AGTAACAGTCATCTCCTGGTTGAATCTTTTTCTTCAAGTTGATGCTGTTAAAGATGTTCCTAAGGTTCTTCT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000029866.16 ENSMUST00000108324.4 ENSMUST00000170901.8 |
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