Pregenerated sensors for CCNE1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000002068Ensembl transcript IDs: ENSMUST00000108023.10, ENSMUST00000124979.3, ENSMUST00000130329.2
Found 77 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GAAGAGATGCACCTCTCCATAGAGCACAGCATCTGCAGGGGCTCCTaGCCTCCAAGGCAGCACAGGGAGCTCCAGGCAGCTGCTTCCACA | + |
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Preference number: 1 (lower is better) Translates to: EEMHLSIEHSICRGS*PPRQHRELQAAAST Trigger: TGTGGAAGCAGCTGCCTGGAGCTCCCTGTGCTGCCTTGGAGGTCAGGAGCCCCTGCAGATGCTGTGCTCTATGGAGAGGTGCATCTCTTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108023.10 |
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| 3UTR GCA 90 bp | GAGAAGGGCAGCCTAGGCCAGGCTGTGGGCTCTGCATCCCACACTTaGTCACAACCACTGGTCACAGCCTATCAACAGCAACCTACAACA | + |
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Preference number: 1 (lower is better) Translates to: EKGSLGQAVGSASHT*SQPLVTAYQQQPTT Trigger: TGTTGTAGGTTGCTGTTGATAGGCTGTGACCAGTGGTTGTGAGCAAGTGTGGGATGCAGAGCCCACAGCCTGGCCTAGGCTGCCCTTCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108023.10 |
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| 3UTR CCA 90 bp | AGCAGCACTTACAAAATAAGAGTTCATGAAGGCAGGACATGCTGTTaGCTGACAGTGGAGAAGGGCAGCCTAGGCCAGGCTGTGGGCTCT | + |
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Preference number: 1 (lower is better) Translates to: SSTYKIRVHEGRTCC*LTVEKGSLGQAVGS Trigger: AGAGCCCACAGCCTGGCCTAGGCTGCCCTTCTCCACTGTCAGCCAACAGCATGTCCTGCCTTCATGAACTCTTATTTTGTAAGTGCTGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108023.10 |
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| 3UTR-3UTR CCA 90 bp | GAAGGGCAGCCTAGGCCAGGCTGTGGGCTCTGCATCCCACACTTGCTCACAACCGTGGTGTTCTGGAGGTaGCTGGTGTACTTGACCCTA | + |
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Preference number: 2 (lower is better) Translates to: EGQPRPGCGLCIPHLLTTVVFWR*LVYLTL Trigger: TAGGGTCAAGTACACCAGCCACCTCCAGAACACCAC...GGTTGTGAGCAAGTGTGGGATGCAGAGCCCACAGCCTGGCCTAGGCTGCCCTTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108023.10 |
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| 3UTR CAA 90 bp | GGAGAAGGGCAGCCTAGGCCAGGCTGTGGGCTCTGCATCCCACACTaGCTCACAACCACTGGTCACAGCCTATCAACAGCAACCTACAAC | + |
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Preference number: 2 (lower is better) Translates to: GEGQPRPGCGLCIPH*LTTTGHSLSTATYN Trigger: GTTGTAGGTTGCTGTTGATAGGCTGTGACCAGTGGTTGTGAGCAAGTGTGGGATGCAGAGCCCACAGCCTGGCCTAGGCTGCCCTTCTCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108023.10 |
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| 3UTR-3UTR TCA 90 bp | AGTGGGTCAAGTAGCACCCTCCTTAGCAGCTTCTGGAGCACTCAGTGGTGTTCTATCTGCAGGGGCTCCTaGCCTCCAAGGCAGCACAGG | + |
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Preference number: 2 (lower is better) Translates to: SGSSSTLLSSFWSTQWCSICRGS*PPRQHR Trigger: CCTGTGCTGCCTTGGAGGTCAGGAGCCCCTGCAGAT...AGAACACCACTGAGTGCTCCAGAAGCTGCTAAGGAGGGTGCTACTTGACCCACT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108023.10 |
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| 3UTR-3UTR GCA 90 bp | CATGAAGGCAGGACATGCTGTTGGCTGACAGTGGAGAAGGGCAGCCTAGGCCAGGGAGCTCCAGGCAGCTaGTTCCACACCACTGTCTTT | + |
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Preference number: 2 (lower is better) Translates to: HEGRTCCWLTVEKGSLGQGAPGS*FHTTVF Trigger: AAAGACAGTGGTGTGGAAGCAGCTGCCTGGAGCTCC...CTGGCCTAGGCTGCCCTTCTCCACTGTCAGCCAACAGCATGTCCTGCCTTCATG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108023.10 |
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| 3UTR-3UTR GCA 90 bp | AGTGGGTCAAGTAGCACCCTCCTTAGCAGCTTCTGGAGCACTCAGTGGTGTTCTCCATCCAAGGCATCTTaGAGACCCCTGCTGCTCCGG | + |
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Preference number: 2 (lower is better) Translates to: SGSSSTLLSSFWSTQWCSPSKAS*RPLLLR Trigger: CCGGAGCAGCAGGGGTCTGCAAGATGCCTTGGATGG...AGAACACCACTGAGTGCTCCAGAAGCTGCTAAGGAGGGTGCTACTTGACCCACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108023.10 |
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| 3UTR-3UTR CCA 90 bp | CTGCTATCCTCGCTTTTCACAGTCTTGTCAATCTTGGCAATTTCTTCATCTGGGAATCCCGGTCCACCATaGGTCCACATGGTGCGACCC | + |
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Preference number: 2 (lower is better) Translates to: LLSSLFTVLSILAISSSGNPGPP*VHMVRP Trigger: GGGTCGCACCATGTGGACCCATGGTGGACCGGGATT...CCCAGATGAAGAAATTGCCAAGATTGACAAGACTGTGAAAAGCGAGGATAGCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124979.3 |
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| 3UTR-3UTR CCA 90 bp | AATTATCATCCCAGGGCTGACTGCTATCCTCGCTTTTCACAGTCTTGTCAATCTCACCATGGGTCCACATaGTGCGACCCAAAGACAAAA | + |
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Preference number: 2 (lower is better) Translates to: NYHPRADCYPRFSQSCQSHHGST*CDPKTK Trigger: TTTTGTCTTTGGGTCGCACCATGTGGACCCATGGTG...AGATTGACAAGACTGTGAAAAGCGAGGATAGCAGTCAGCCCTGGGATGATAATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124979.3 |
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| 3UTR TCA 72 bp | CACCTCTCCATAGAGCACAGCATCTGCAGGGGCTCCTaGCCTCCAAGGCAGCACAGGGAGCTCCAGGCAGCT | + |
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Preference number: 3 (lower is better) Translates to: HLSIEHSICRGS*PPRQHRELQAA Trigger: AGCTGCCTGGAGCTCCCTGTGCTGCCTTGGAGGTCAGGAGCCCCTGCAGATGCTGTGCTCTATGGAGAGGTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108023.10 |
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| 3UTR GCA 72 bp | CTGACCTCCAAGGCAGCACAGGGAGCTCCAGGCAGCTaGTTCCACACCACTGTCTTTGGAGGCAATGGCAGG | + |
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Preference number: 3 (lower is better) Translates to: LTSKAAQGAPGS*FHTTVFGGNGR Trigger: CCTGCCATTGCCTCCAAAGACAGTGGTGTGGAAGCAGCTGCCTGGAGCTCCCTGTGCTGCCTTGGAGGTCAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108023.10 |
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| 3UTR GCA 72 bp | AGTGGAGAAGGGCAGCCTAGGCCAGGCTGTGGGCTCTaGATCCCACACTTGCTCACAACCACTGGTCACAGC | + |
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Preference number: 3 (lower is better) Translates to: SGEGQPRPGCGL*IPHLLTTTGHS Trigger: GCTGTGACCAGTGGTTGTGAGCAAGTGTGGGATGCAGAGCCCACAGCCTGGCCTAGGCTGCCCTTCTCCACT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108023.10 |
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| 3UTR-3UTR CAA 90 bp | GCAGCTTCTGGAGCACTCAGTGGTGTTCTGGAGGTGGCTGGTGTACTTGACCCTTCCATCCAAGGCATCTaGCAGACCCCTGCTGCTCCG | + |
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Preference number: 3 (lower is better) Translates to: AASGALSGVLEVAGVLDPSIQGI*QTPAAP Trigger: CGGAGCAGCAGGGGTCTGCAAGATGCCTTGGATGGA...AGGGTCAAGTACACCAGCCACCTCCAGAACACCACTGAGTGCTCCAGAAGCTGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108023.10 |
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| 3UTR GCA 72 bp | AGCCTAGGCCAGGCTGTGGGCTCTGCATCCCACACTTaGTCACAACCACTGGTCACAGCCTATCAACAGCAA | + |
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Preference number: 3 (lower is better) Translates to: SLGQAVGSASHT*SQPLVTAYQQQ Trigger: TTGCTGTTGATAGGCTGTGACCAGTGGTTGTGAGCAAGTGTGGGATGCAGAGCCCACAGCCTGGCCTAGGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108023.10 |
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| 3UTR CCA 72 bp | TCCAGTGGGTCAAGTAGCACCCTCCTTAGCAGCTTCTaGAGCACTCAGTGGTGTTCTGGAGGTGGCTGGTGT | + |
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Preference number: 3 (lower is better) Translates to: SSGSSSTLLSSF*STQWCSGGGWC Trigger: ACACCAGCCACCTCCAGAACACCACTGAGTGCTCCAGAAGCTGCTAAGGAGGGTGCTACTTGACCCACTGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108023.10 |
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| 3UTR GCA 72 bp | AAGCACTTCCATCCAAGGCATCTTGCAGACCCCTGCTaGTCCGGAAGAGATGCACCTCTCCATAGAGCACAG | + |
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Preference number: 3 (lower is better) Translates to: KHFHPRHLADPC*SGRDAPLHRAQ Trigger: CTGTGCTCTATGGAGAGGTGCATCTCTTCCGGAGCAGCAGGGGTCTGCAAGATGCCTTGGATGGAAGTGCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108023.10 |
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| 3UTR CCA 72 bp | CTGTGGGCTCTGCATCCCACACTTGCTCACAACCACTaGTCACAGCCTATCAACAGCAACCTACAACACCCG | + |
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Preference number: 3 (lower is better) Translates to: LWALHPTLAHNH*SQPINSNLQHP Trigger: CGGGTGTTGTAGGTTGCTGTTGATAGGCTGTGACCAGTGGTTGTGAGCAAGTGTGGGATGCAGAGCCCACAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108023.10 |
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| 3UTR CCA 72 bp | TACAAAATAAGAGTTCATGAAGGCAGGACATGCTGTTaGCTGACAGTGGAGAAGGGCAGCCTAGGCCAGGCT | + |
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Preference number: 3 (lower is better) Translates to: YKIRVHEGRTCC*LTVEKGSLGQA Trigger: AGCCTGGCCTAGGCTGCCCTTCTCCACTGTCAGCCAACAGCATGTCCTGCCTTCATGAACTCTTATTTTGTA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108023.10 |
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| CDS-3UTR GCA 90 bp | GCTCCTGACCTCCAAGGCAGCACAGGGAGCTCCAGGCAGCTGCTTCCACACCACGGGACTCCCCGGAAGTaGTTGAGCTTGGAACTTCCC | + |
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Preference number: 4 (lower is better) Translates to: APDLQGSTGSSRQLLPHHGTPRK*LSLELP Trigger: GGGAAGTTCCAAGCTCAAGCACTTCCGGGGAGTCCC...GTGGTGTGGAAGCAGCTGCCTGGAGCTCCCTGTGCTGCCTTGGAGGTCAGGAGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108023.10 |
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| CDS-3UTR GCA 90 bp | CAGCCTAGGCCAGGCTGTGGGCTCTGCATCCCACACTTGCTCACAACCACTGGTTCCTGCTCGCTGCTCTaGTTCTTACTGCTGGGTGGG | + |
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Preference number: 4 (lower is better) Translates to: QPRPGCGLCIPHLLTTTGSCSLL*FLLLGG Trigger: CCCACCCAGCAGTAAGAAGCAGAGCAGCGAGCAGGA...ACCAGTGGTTGTGAGCAAGTGTGGGATGCAGAGCCCACAGCCTGGCCTAGGCTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108023.10 |
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| CDS-3UTR CCA 90 bp | CAGGGGCTCCTGACCTCCAAGGCAGCACAGGGAGCTCCAGGCAGCTGCTTCCACTCTTTCATGTTGCTGTaGTCCGTCGAGTCTCTCTCC | + |
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Preference number: 4 (lower is better) Translates to: QGLLTSKAAQGAPGSCFHSFMLL*SVESLS Trigger: GGAGAGAGACTCGACGGACCACAGCAACATGAAAGA...GTGGAAGCAGCTGCCTGGAGCTCCCTGTGCTGCCTTGGAGGTCAGGAGCCCCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108023.10 |
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| CDS-3UTR CCA 90 bp | CAGCCTAGGCCAGGCTGTGGGCTCTGCATCCCACACTTGCTCACAACCACTGGTTCAGCCAGGACACAATaGTCAGAGGGCTTAGACGCC | + |
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Preference number: 4 (lower is better) Translates to: QPRPGCGLCIPHLLTTTGSARTQ*SEGLDA Trigger: GGCGTCTAAGCCCTCTGACCATTGTGTCCTGGCTGA...ACCAGTGGTTGTGAGCAAGTGTGGGATGCAGAGCCCACAGCCTGGCCTAGGCTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108023.10 |
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| CDS-3UTR CCA 90 bp | ACATGCTGTTGGCTGACAGTGGAGAAGGGCAGCCTAGGCCAGGCTGTGGGCTCTTGGGTCTGGATGTTGTaGGAGTCTTCCATGGGGACT | + |
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Preference number: 4 (lower is better) Translates to: TCCWLTVEKGSLGQAVGSWVWML*ESSMGT Trigger: AGTCCCCATGGAAGACTCCCACAACATCCAGACCCA...AGAGCCCACAGCCTGGCCTAGGCTGCCCTTCTCCACTGTCAGCCAACAGCATGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108023.10 |
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| CDS-3UTR TCA 90 bp | AGCTTGTGTCATCTGTGTGAAGAGTCCAGTGGGTCAAGTAGCACCCTCCTTAGCACCTGCTGTGGGTACTaGGGCATCAGCACCTCACCC | + |
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Preference number: 4 (lower is better) Translates to: SLCHLCEESSGSSSTLLSTCCGY*GISTSP Trigger: GGGTGAGGTGCTGATGCCTCAGTACCCACAGCAGGT...GCTAAGGAGGGTGCTACTTGACCCACTGGACTCTTCACACAGATGACACAAGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108023.10 |
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| CDS-3UTR GCA 90 bp | GAGCTCCAGGCAGCTGCTTCCACACCACTGTCTTTGGAGGCAATGGCAGGTTTGCCAATCCAGAAGAACTaGTCTCATCCTCGCCTGCAG | + |
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Preference number: 4 (lower is better) Translates to: ELQAAASTPLSLEAMAGLPIQKN*SHPRLQ Trigger: CTGCAGGCGAGGATGAGAGCAGTTCTTCTGGATTGG...CAAACCTGCCATTGCCTCCAAAGACAGTGGTGTGGAAGCAGCTGCCTGGAGCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108023.10 |
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| CDS-3UTR CCA 90 bp | GACCTCCAAGGCAGCACAGGGAGCTCCAGGCAGCTGCTTCCACACCACTGTCTTGCAAATCCAAGCTGTTaGTGTGGGTCTGGATGTTGT | + |
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Preference number: 4 (lower is better) Translates to: DLQGSTGSSRQLLPHHCLANPSC*CGSGCC Trigger: ACAACATCCAGACCCACACCAACAGCTTGGATTTGC...AAGACAGTGGTGTGGAAGCAGCTGCCTGGAGCTCCCTGTGCTGCCTTGGAGGTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108023.10 |
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| CDS-3UTR TCA 90 bp | ACCTCCAAGGCAGCACAGGGAGCTCCAGGCAGCTGCTTCCACACCACTGTCTTTACGGAACCATCCATTTaGCACACTTCTCTATGTCGC | + |
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Preference number: 4 (lower is better) Translates to: TSKAAQGAPGSCFHTTVFTEPSI*HTSLCR Trigger: GCGACATAGAGAAGTGTGTCAAATGGATGGTTCCGT...AAAGACAGTGGTGTGGAAGCAGCTGCCTGGAGCTCCCTGTGCTGCCTTGGAGGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108023.10 |
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| CDS-3UTR GCA 90 bp | CTGACAGTGGAGAAGGGCAGCCTAGGCCAGGCTGTGGGCTCTGCATCCCACACTAAACCTCTTCTCTATTaGCCCAATTCAAGACGGGAA | + |
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Preference number: 4 (lower is better) Translates to: LTVEKGSLGQAVGSASHTKPLLY*PNSRRE Trigger: TTCCCGTCTTGAATTGGGGCAATAGAGAAGAGGTTT...AGTGTGGGATGCAGAGCCCACAGCCTGGCCTAGGCTGCCCTTCTCCACTGTCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108023.10 |
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| CDS-3UTR CCA 90 bp | AGGCAGCACAGGGAGCTCCAGGCAGCTGCTTCCACACCACTGTCTTTGGAGGCAATGGCTTTCTTTGCTTaGGCTTTGTCCAGCAAATCC | + |
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Preference number: 4 (lower is better) Translates to: RQHRELQAAASTPLSLEAMAFFA*ALSSKS Trigger: GGATTTGCTGGACAAAGCCCAAGCAAAGAAAGCCAT...TGCCTCCAAAGACAGTGGTGTGGAAGCAGCTGCCTGGAGCTCCCTGTGCTGCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108023.10 |
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| CDS-3UTR GCA 90 bp | GCAGCTTCTGGAGCACTCAGTGGTGTTCTGGAGGTGGCTGGTGTACTTGACCCTAAACACGGCCACATTTaGCTTCCTTTTTCTGGAGCG | + |
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Preference number: 4 (lower is better) Translates to: AASGALSGVLEVAGVLDPKHGHI*LPFSGA Trigger: CGCTCCAGAAAAAGGAAGGCAAATGTGGCCGTGTTT...AGGGTCAAGTACACCAGCCACCTCCAGAACACCACTGAGTGCTCCAGAAGCTGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000108023.10 |
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| CDS-3UTR CCA 90 bp | ACCTCCAAGGCAGCACAGGGAGCTCCAGGCAGCTGCTTCCACACCACTGTCTTTGGCAATTTCTTCATCTaGGTCTTGCAAAAACACGGC | + |
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Preference number: 4 (lower is better) Translates to: TSKAAQGAPGSCFHTTVFGNFFI*VLQKHG Trigger: GCCGTGTTTTTGCAAGACCCAGATGAAGAAATTGCC...AAAGACAGTGGTGTGGAAGCAGCTGCCTGGAGCTCCCTGTGCTGCCTTGGAGGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000108023.10 |
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| CDS-3UTR CCA 90 bp | CAGCCTAGGCCAGGCTGTGGGCTCTGCATCCCACACTTGCTCACAACCACTGGTAAACTGGTGCAACTTTaGAGGGTAGATTTCCTCAAG | + |
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Preference number: 4 (lower is better) Translates to: QPRPGCGLCIPHLLTTTGKLVQL*RVDFLK Trigger: CTTGAGGAAATCTACCCTCCAAAGTTGCACCAGTTT...ACCAGTGGTTGTGAGCAAGTGTGGGATGCAGAGCCCACAGCCTGGCCTAGGCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108023.10 |
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| CDS-3UTR CCA 90 bp | AGCTTGTGTCATCTGTGTGAAGAGTCCAGTGGGTCAAGTAGCACCCTCCTTAGCCTTCTTACTGCTGGGTaGGGGTGTCAGGACCACACT | + |
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Preference number: 4 (lower is better) Translates to: SLCHLCEESSGSSSTLLSLLTAG*GCQDHT Trigger: AGTGTGGTCCTGACACCCCCACCCAGCAGTAAGAAG...GCTAAGGAGGGTGCTACTTGACCCACTGGACTCTTCACACAGATGACACAAGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108023.10 |
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| CDS-3UTR CCA 90 bp | CCCTCCTTAGCAGCTTCTGGAGCACTCAGTGGTGTTCTGGAGGTGGCTGGTGTAGCTGAAATGCAGTCCTaGGGTATTCAAGCTCATTGT | + |
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Preference number: 4 (lower is better) Translates to: PSLAASGALSGVLEVAGVAEMQS*GIQAHC Trigger: ACAATGAGCTTGAATACCCCAGGACTGCATTTCAGC...TACACCAGCCACCTCCAGAACACCACTGAGTGCTCCAGAAGCTGCTAAGGAGGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108023.10 |
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| CDS-3UTR TCA 90 bp | AGGCCAGGCTGTGGGCTCTGCATCCCACACTTGCTCACAACCACTGGTCACAGCTTTCTTTGTTTAACATaGTCCTCCAAACCTCTTCTC | + |
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Preference number: 4 (lower is better) Translates to: RPGCGLCIPHLLTTTGHSFLCLT*SSKPLL Trigger: GAGAAGAGGTTTGGAGGATCATGTTAAACAAAGAAA...GCTGTGACCAGTGGTTGTGAGCAAGTGTGGGATGCAGAGCCCACAGCCTGGCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108023.10 |
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| CDS-3UTR TCA 90 bp | GACCTCCAAGGCAGCACAGGGAGCTCCAGGCAGCTGCTTCCACACCACTGTCTTAATCCTATTCTGTTCTaGCAATATGGCTTTCTTTGC | + |
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Preference number: 4 (lower is better) Translates to: DLQGSTGSSRQLLPHHCLNPILF*QYGFLC Trigger: GCAAAGAAAGCCATATTGTCAGAACAGAATAGGATT...AAGACAGTGGTGTGGAAGCAGCTGCCTGGAGCTCCCTGTGCTGCCTTGGAGGTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108023.10 |
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| 3UTR CAA 72 bp | CTAGCATTCAATAAAAGCACTTCCATCCAAGGCATCTaGCAGACCCCTGCTGCTCCGGAAGAGATGCACCTC | + |
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Preference number: 4 (lower is better) Translates to: LAFNKSTSIQGI*QTPAAPEEMHL Trigger: GAGGTGCATCTCTTCCGGAGCAGCAGGGGTCTGCAAGATGCCTTGGATGGAAGTGCTTTTATTGAATGCTAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108023.10 |
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| CDS-3UTR TCA 90 bp | AGCTTGTGTCATCTGTGTGAAGAGTCCAGTGGGTCAAGTAGCACCCTCCTTAGCTCCAGTGAGGAGAAATaGTACAAAGCAGAAGCAGCG | + |
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Preference number: 4 (lower is better) Translates to: SLCHLCEESSGSSSTLLSSSEEK*YKAEAA Trigger: CGCTGCTTCTGCTTTGTATCATTTCTCCTCACTGGA...GCTAAGGAGGGTGCTACTTGACCCACTGGACTCTTCACACAGATGACACAAGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108023.10 |
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| CDS-3UTR GCA 90 bp | AATTATCATCCCAGGGCTGACTGCTATCCTCGCTTTTCACAGTCTTGTCAATCTCACCACGGCCACATTTaGCTTCCTTTTTCTGGAGCG | + |
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Preference number: 4 (lower is better) Translates to: NYHPRADCYPRFSQSCQSHHGHI*LPFSGA Trigger: CGCTCCAGAAAAAGGAAGGCAAATGTGGCCGTGGTG...AGATTGACAAGACTGTGAAAAGCGAGGATAGCAGTCAGCCCTGGGATGATAATT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000124979.3 |
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| CDS-3UTR CCA 90 bp | TCCTCGCTTTTCACAGTCTTGTCAATCTTGGCAATTTCTTCATCTGGGTCTTGCTCTTTCATGTTGCTGTaGTCCGTCGAGTCTCTCTCC | + |
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Preference number: 4 (lower is better) Translates to: SSLFTVLSILAISSSGSCSFMLL*SVESLS Trigger: GGAGAGAGACTCGACGGACCACAGCAACATGAAAGA...GCAAGACCCAGATGAAGAAATTGCCAAGATTGACAAGACTGTGAAAAGCGAGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124979.3 |
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| CDS-3UTR CCA 90 bp | CACAGTCTTGTCAATCTTGGCAATTTCTTCATCTGGGTCTTGCAAAAACTAAAAAAGAAGAACCAAATTTaGTACCCAGGTAAGATGGAA | + |
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Preference number: 4 (lower is better) Translates to: HSLVNLGNFFIWVLQKLKKKNQI*YPGKME Trigger: TTCCATCTTACCTGGGTACCAAATTTGGTTCTTCTT...TTTTAGTTTTTGCAAGACCCAGATGAAGAAATTGCCAAGATTGACAAGACTGTG 37% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt. Matches the following 1 transcripts: ENSMUST00000124979.3 |
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| CDS-3UTR CAA 90 bp | ACATGCTGTTGGCTGACAGTGGAGAAGGGCAGCCTAGGCCAGGCTGTGGGCTCTCGGAAGTGCTTGAGCTaGGAACTTCCCATCTCCCGG | + |
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Preference number: 5 (lower is better) Translates to: TCCWLTVEKGSLGQAVGSRKCLS*ELPISR Trigger: CCGGGAGATGGGAAGTTCCAAGCTCAAGCACTTCCG...AGAGCCCACAGCCTGGCCTAGGCTGCCCTTCTCCACTGTCAGCCAACAGCATGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108023.10 |
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| CDS-3UTR CAA 90 bp | ACCTCCAAGGCAGCACAGGGAGCTCCAGGCAGCTGCTTCCACACCACTGTCTTTGTGTGGGTCTGGATGTaGTGGGAGTCTTCCATGGGG | + |
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Preference number: 5 (lower is better) Translates to: TSKAAQGAPGSCFHTTVFVWVWM*WESSMG Trigger: CCCCATGGAAGACTCCCACAACATCCAGACCCACAC...AAAGACAGTGGTGTGGAAGCAGCTGCCTGGAGCTCCCTGTGCTGCCTTGGAGGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108023.10 |
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| CDS-3UTR CAA 90 bp | GCTCCTGACCTCCAAGGCAGCACAGGGAGCTCCAGGCAGCTGCTTCCACACCACGTTGACATAGGCCACTaGGACATAGACATTCAGCCA | + |
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Preference number: 5 (lower is better) Translates to: APDLQGSTGSSRQLLPHHVDIGH*DIDIQP Trigger: TGGCTGAATGTCTATGTCCAAGTGGCCTATGTCAAC...GTGGTGTGGAAGCAGCTGCCTGGAGCTCCCTGTGCTGCCTTGGAGGTCAGGAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108023.10 |
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| CDS-3UTR CAA 90 bp | CAGGGGCTCCTGACCTCCAAGGCAGCACAGGGAGCTCCAGGCAGCTGCTTCCACACAATATGGCTTTCTTaGCTTGGGCTTTGTCCAGCA | + |
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Preference number: 5 (lower is better) Translates to: QGLLTSKAAQGAPGSCFHTIWLS*LGLCPA Trigger: TGCTGGACAAAGCCCAAGCAAAGAAAGCCATATTGT...GTGGAAGCAGCTGCCTGGAGCTCCCTGTGCTGCCTTGGAGGTCAGGAGCCCCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108023.10 |
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| CDS-3UTR CAA 90 bp | CTGACAGTGGAGAAGGGCAGCCTAGGCCAGGCTGTGGGCTCTGCATCCCACACTCAAACCTCTTCTCTATaGCCCCAATTCAAGACGGGA | + |
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Preference number: 5 (lower is better) Translates to: LTVEKGSLGQAVGSASHTQTSSL*PQFKTG Trigger: TCCCGTCTTGAATTGGGGCAATAGAGAAGAGGTTTG...AGTGTGGGATGCAGAGCCCACAGCCTGGCCTAGGCTGCCCTTCTCCACTGTCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108023.10 |
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| CDS-3UTR CAA 90 bp | AAGGCAGCACAGGGAGCTCCAGGCAGCTGCTTCCACACCACTGTCTTTGGAGGCTTCTTTGCTTGGGCTTaGTCCAGCAAATCCAAGCTG | + |
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Preference number: 5 (lower is better) Translates to: KAAQGAPGSCFHTTVFGGFFAWA*SSKSKL Trigger: CAGCTTGGATTTGCTGGACAAAGCCCAAGCAAAGAA...GCCTCCAAAGACAGTGGTGTGGAAGCAGCTGCCTGGAGCTCCCTGTGCTGCCTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108023.10 |
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| CDS TCA 90 bp | AGACCTGCTGTGGGTACTGAGGCATCAGCACCTCACCCGTGTCGTTaGCATAGGCCACTTGGACATAGACATTCAGCCAGGACACAATGG | + |
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Preference number: 5 (lower is better) Translates to: RPAVGTEASAPHPCR*HRPLGHRHSARTQW Trigger: CCATTGTGTCCTGGCTGAATGTCTATGTCCAAGTGGCCTATGTCAACGACACGGGTGAGGTGCTGATGCCTCAGTACCCACAGCAGGTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108023.10 |
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| CDS CCA 90 bp | GCTTTGTCCAGCAAATCCAAGCTGTTGGTGTGGGTCTGGATGTTGTaGGAGTCTTCCATGGGGACTCCCCGGAAGTGCTTGAGCTTGGAA | + |
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Preference number: 5 (lower is better) Translates to: ALSSKSKLLVWVWML*ESSMGTPRKCLSLE Trigger: TTCCAAGCTCAAGCACTTCCGGGGAGTCCCCATGGAAGACTCCCACAACATCCAGACCCACACCAACAGCTTGGATTTGCTGGACAAAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108023.10 |
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| CDS-3UTR CAA 90 bp | ACATGCTGTTGGCTGACAGTGGAGAAGGGCAGCCTAGGCCAGGCTGTGGGCTCTTCATTGTCCTCTTCTTaGTTAGGGGTGGGGATGAAA | + |
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Preference number: 5 (lower is better) Translates to: TCCWLTVEKGSLGQAVGSSLSSS*LGVGMK Trigger: TTTCATCCCCACCCCTAACAAAGAAGAGGACAATGA...AGAGCCCACAGCCTGGCCTAGGCTGCCCTTCTCCACTGTCAGCCAACAGCATGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108023.10 |
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| CDS-3UTR CAA 90 bp | AGGCCAGGCTGTGGGCTCTGCATCCCACACTTGCTCACAACCACTGGTCACAGCAACGGAACCATCCATTaGACACACTTCTCTATGTCG | + |
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Preference number: 5 (lower is better) Translates to: RPGCGLCIPHLLTTTGHSNGTIH*THFSMS Trigger: CGACATAGAGAAGTGTGTCAAATGGATGGTTCCGTT...GCTGTGACCAGTGGTTGTGAGCAAGTGTGGGATGCAGAGCCCACAGCCTGGCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108023.10 |
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| CDS-3UTR CAA 90 bp | ACCTCCAAGGCAGCACAGGGAGCTCCAGGCAGCTGCTTCCACACCACTGTCTTTCAAACTGGTGCAACTTaGGAGGGTAGATTTCCTCAA | + |
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Preference number: 5 (lower is better) Translates to: TSKAAQGAPGSCFHTTVFQTGAT*EGRFPQ Trigger: TTGAGGAAATCTACCCTCCAAAGTTGCACCAGTTTG...AAAGACAGTGGTGTGGAAGCAGCTGCCTGGAGCTCCCTGTGCTGCCTTGGAGGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108023.10 |
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| CDS-3UTR CAA 90 bp | AGCTTGTGTCATCTGTGTGAAGAGTCCAGTGGGTCAAGTAGCACCCTCCTTAGCACTCCCCGGAAGTGCTaGAGCTTGGAACTTCCCATC | + |
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Preference number: 5 (lower is better) Translates to: SLCHLCEESSGSSSTLLSTPRKC*SLELPI Trigger: GATGGGAAGTTCCAAGCTCAAGCACTTCCGGGGAGT...GCTAAGGAGGGTGCTACTTGACCCACTGGACTCTTCACACAGATGACACAAGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108023.10 |
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| CDS TCA 90 bp | TGTACTCACCACGGCCACATTTGCCTTCCTTTTTCTGGAGCGGACTaGAAGGTCGGAGCCACCTTCTTCTTTCATGTTGCTGTGGTCCGT | + |
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Preference number: 5 (lower is better) Translates to: CTHHGHICLPFSGAD*KVGATFFFHVAVVR Trigger: ACGGACCACAGCAACATGAAAGAAGAAGGTGGCTCCGACCTTTCAGTCCGCTCCAGAAAAAGGAAGGCAAATGTGGCCGTGGTGAGTACA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000124979.3 |
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| CDS CCA 90 bp | GATCCTCCAAACCTCTTCTCTATTGCCCCAATTCAAGACGGGAAGTaGGGAGGCTCTGGGTGGTCTGATTTTCCGAGGCTGAAATGCAGT | + |
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Preference number: 5 (lower is better) Translates to: DPPNLFSIAPIQDGK*GGSGWSDFPRLKCS Trigger: ACTGCATTTCAGCCTCGGAAAATCAGACCACCCAGAGCCTCCCCACTTCCCGTCTTGAATTGGGGCAATAGAGAAGAGGTTTGGAGGATC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000108023.10 ENSMUST00000130329.2 |
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| CDS-3UTR CAA 90 bp | AGTGGGTCAAGTAGCACCCTCCTTAGCAGCTTCTGGAGCACTCAGTGGTGTTCTCCTTCTTCTTTCATGTaGCTGTGGTCCGTCGAGTCT | + |
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Preference number: 5 (lower is better) Translates to: SGSSSTLLSSFWSTQWCSPSSFM*LWSVES Trigger: AGACTCGACGGACCACAGCAACATGAAAGAAGAAGG...AGAACACCACTGAGTGCTCCAGAAGCTGCTAAGGAGGGTGCTACTTGACCCACT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108023.10 |
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| CDS-3UTR CAA 90 bp | AAGGCAGCACAGGGAGCTCCAGGCAGCTGCTTCCACACCACTGTCTTTGGAGGCTCGCTTTTCACAGTCTaGTCAATCTTGGCAATTTCT | + |
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Preference number: 5 (lower is better) Translates to: KAAQGAPGSCFHTTVFGGSLFTV*SILAIS Trigger: AGAAATTGCCAAGATTGACAAGACTGTGAAAAGCGA...GCCTCCAAAGACAGTGGTGTGGAAGCAGCTGCCTGGAGCTCCCTGTGCTGCCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108023.10 |
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| CDS TCA 90 bp | TTGCAAAAACACGGCCACATTTGCCTTCCTTTTTCTGGAGCGGACTaGAAGGTCGGAGCCACCTTCTTCTTTCATGTTGCTGTGGTCCGT | + |
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Preference number: 5 (lower is better) Translates to: LQKHGHICLPFSGAD*KVGATFFFHVAVVR Trigger: ACGGACCACAGCAACATGAAAGAAGAAGGTGGCTCCGACCTTTCAGTCCGCTCCAGAAAAAGGAAGGCAAATGTGGCCGTGTTTTTGCAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000108023.10 ENSMUST00000130329.2 |
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| CDS CCA 90 bp | CATCTGGGTCTTGCAAAAACACGGCCACATTTGCCTTCCTTTTTCTaGAGCGGACTGAAAGGTCGGAGCCACCTTCTTCTTTCATGTTGC | + |
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Preference number: 5 (lower is better) Translates to: HLGLAKTRPHLPSFF*SGLKGRSHLLLSCC Trigger: GCAACATGAAAGAAGAAGGTGGCTCCGACCTTTCAGTCCGCTCCAGAAAAAGGAAGGCAAATGTGGCCGTGTTTTTGCAAGACCCAGATG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000108023.10 ENSMUST00000130329.2 |
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| CDS CCA 90 bp | CTGTATCCTTTGTACTCACCACGGCCACATTTGCCTTCCTTTTTCTaGAGCGGACTGAAAGGTCGGAGCCACCTTCTTCTTTCATGTTGC | + |
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Preference number: 5 (lower is better) Translates to: LYPLYSPRPHLPSFF*SGLKGRSHLLLSCC Trigger: GCAACATGAAAGAAGAAGGTGGCTCCGACCTTTCAGTCCGCTCCAGAAAAAGGAAGGCAAATGTGGCCGTGGTGAGTACAAAGGATACAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000124979.3 |
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| CDS-3UTR CAA 90 bp | TGTGTGAAGAGTCCAGTGGGTCAAGTAGCACCCTCCTTAGCAGCTTCTGGAGCATATGGCTTTCTTTGCTaGGGCTTTGTCCAGCAAATC | + |
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Preference number: 5 (lower is better) Translates to: CVKSPVGQVAPSLAASGAYGFLC*GFVQQI Trigger: GATTTGCTGGACAAAGCCCAAGCAAAGAAAGCCATA...TGCTCCAGAAGCTGCTAAGGAGGGTGCTACTTGACCCACTGGACTCTTCACACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108023.10 |
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| CDS TCA 90 bp | GGGTGTCAGGACCACACTCGGAGGAGGAGAAATCCTATTCTGTTCTaGCAATATGGCTTTCTTTGCTTGGGCTTTGTCCAGCAAATCCAA | + |
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Preference number: 5 (lower is better) Translates to: GCQDHTRRRRNPILF*QYGFLCLGFVQQIQ Trigger: TTGGATTTGCTGGACAAAGCCCAAGCAAAGAAAGCCATATTGTCAGAACAGAATAGGATTTCTCCTCCTCCGAGTGTGGTCCTGACACCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108023.10 |
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| CDS-3UTR CAA 90 bp | CTGCTATCCTCGCTTTTCACAGTCTTGTCAATCTTGGCAATTTCTTCATCTGGGCCTTCTTCTTTCATGTaGCTGTGGTCCGTCGAGTCT | + |
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Preference number: 5 (lower is better) Translates to: LLSSLFTVLSILAISSSGPSSFM*LWSVES Trigger: AGACTCGACGGACCACAGCAACATGAAAGAAGAAGG...CCCAGATGAAGAAATTGCCAAGATTGACAAGACTGTGAAAAGCGAGGATAGCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124979.3 |
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| CDS CCA 72 bp | GCTTTGTCCAGCAAATCCAAGCTGTTGGTGTGGGTCTaGATGTTGTGGGAGTCTTCCATGGGGACTCCCCGG | + |
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Preference number: 6 (lower is better) Translates to: ALSSKSKLLVWV*MLWESSMGTPR Trigger: CCGGGGAGTCCCCATGGAAGACTCCCACAACATCCAGACCCACACCAACAGCTTGGATTTGCTGGACAAAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108023.10 |
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| CDS GCA 72 bp | ATGTTGTGGGAGTCTTCCATGGGGACTCCCCGGAAGTaGTTGAGCTTGGAACTTCCCATCTCCCGGATAACC | + |
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Preference number: 6 (lower is better) Translates to: MLWESSMGTPRK*LSLELPISRIT Trigger: GGTTATCCGGGAGATGGGAAGTTCCAAGCTCAAGCACTTCCGGGGAGTCCCCATGGAAGACTCCCACAACAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108023.10 |
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| CDS CCA 72 bp | AGCAAATCCAAGCTGTTGGTGTGGGTCTGGATGTTGTaGGAGTCTTCCATGGGGACTCCCCGGAAGTGCTTG | + |
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Preference number: 6 (lower is better) Translates to: SKSKLLVWVWML*ESSMGTPRKCL Trigger: CAAGCACTTCCGGGGAGTCCCCATGGAAGACTCCCACAACATCCAGACCCACACCAACAGCTTGGATTTGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108023.10 |
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| CDS CAA 72 bp | TTGTGGGAGTCTTCCATGGGGACTCCCCGGAAGTGCTaGAGCTTGGAACTTCCCATCTCCCGGATAACCATG | + |
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Preference number: 6 (lower is better) Translates to: LWESSMGTPRKC*SLELPISRITM Trigger: CATGGTTATCCGGGAGATGGGAAGTTCCAAGCTCAAGCACTTCCGGGGAGTCCCCATGGAAGACTCCCACAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108023.10 |
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| CDS CAA 90 bp | TGTCCCCTTCCCAACCTGTATCCTTTGTACTCACCACGGCCACATTaGCCTTCCTTTTTCTGGAGCGGACTGAAAGGTCGGAGCCACCTT | + |
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Preference number: 6 (lower is better) Translates to: CPLPNLYPLYSPRPH*PSFFWSGLKGRSHL Trigger: AAGGTGGCTCCGACCTTTCAGTCCGCTCCAGAAAAAGGAAGGCAAATGTGGCCGTGGTGAGTACAAAGGATACAGGTTGGGAAGGGGACA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000124979.3 |
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| CDS CAA 72 bp | CCCAACCTGTATCCTTTGTACTCACCACGGCCACATTaGCCTTCCTTTTTCTGGAGCGGACTGAAAGGTCGG | + |
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Preference number: 6 (lower is better) Translates to: PNLYPLYSPRPH*PSFFWSGLKGR Trigger: CCGACCTTTCAGTCCGCTCCAGAAAAAGGAAGGCAAATGTGGCCGTGGTGAGTACAAAGGATACAGGTTGGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000124979.3 |
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| CDS TCA 72 bp | CACGGCCACATTTGCCTTCCTTTTTCTGGAGCGGACTaGAAGGTCGGAGCCACCTTCTTCTTTCATGTTGCT | + |
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Preference number: 6 (lower is better) Translates to: HGHICLPFSGAD*KVGATFFFHVA Trigger: AGCAACATGAAAGAAGAAGGTGGCTCCGACCTTTCAGTCCGCTCCAGAAAAAGGAAGGCAAATGTGGCCGTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000108023.10 ENSMUST00000124979.3 ENSMUST00000130329.2 |
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| CDS CCA 72 bp | TTGTACTCACCACGGCCACATTTGCCTTCCTTTTTCTaGAGCGGACTGAAAGGTCGGAGCCACCTTCTTCTT | + |
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Preference number: 6 (lower is better) Translates to: LYSPRPHLPSFF*SGLKGRSHLLL Trigger: AAGAAGAAGGTGGCTCCGACCTTTCAGTCCGCTCCAGAAAAAGGAAGGCAAATGTGGCCGTGGTGAGTACAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000124979.3 |
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| CDS CAA 90 bp | TCTTGGCAATTTCTTCATCTGGGTCTTGCAAAAACACGGCCACATTaGCCTTCCTTTTTCTGGAGCGGACTGAAAGGTCGGAGCCACCTT | + |
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Preference number: 6 (lower is better) Translates to: SWQFLHLGLAKTRPH*PSFFWSGLKGRSHL Trigger: AAGGTGGCTCCGACCTTTCAGTCCGCTCCAGAAAAAGGAAGGCAAATGTGGCCGTGTTTTTGCAAGACCCAGATGAAGAAATTGCCAAGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000108023.10 ENSMUST00000130329.2 |
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| CDS CAA 72 bp | TTTCTTCATCTGGGTCTTGCAAAAACACGGCCACATTaGCCTTCCTTTTTCTGGAGCGGACTGAAAGGTCGG | + |
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Preference number: 6 (lower is better) Translates to: FLHLGLAKTRPH*PSFFWSGLKGR Trigger: CCGACCTTTCAGTCCGCTCCAGAAAAAGGAAGGCAAATGTGGCCGTGTTTTTGCAAGACCCAGATGAAGAAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000108023.10 ENSMUST00000130329.2 |
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| CDS GCA 72 bp | GTCTTGTCAATCTTGGCAATTTCTTCATCTGGGTCTTaGAAAAACACGGCCACATTTGCCTTCCTTTTTCTG | + |
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Preference number: 6 (lower is better) Translates to: VLSILAISSSGS*KNTATFAFLFL Trigger: CAGAAAAAGGAAGGCAAATGTGGCCGTGTTTTTGCAAGACCCAGATGAAGAAATTGCCAAGATTGACAAGAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000108023.10 ENSMUST00000130329.2 |
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| CDS CCA 72 bp | TTTCACAGTCTTGTCAATCTTGGCAATTTCTTCATCTaGGTCTTGCAAAAACACGGCCACATTTGCCTTCCT | + |
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Preference number: 6 (lower is better) Translates to: FHSLVNLGNFFI*VLQKHGHICLP Trigger: AGGAAGGCAAATGTGGCCGTGTTTTTGCAAGACCCAGATGAAGAAATTGCCAAGATTGACAAGACTGTGAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000108023.10 ENSMUST00000130329.2 |
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| CDS CAA 72 bp | AGTCTTGTCAATCTTGGCAATTTCTTCATCTGGGTCTaGCAAAAACACGGCCACATTTGCCTTCCTTTTTCT | + |
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Preference number: 6 (lower is better) Translates to: SLVNLGNFFIWV*QKHGHICLPFS Trigger: AGAAAAAGGAAGGCAAATGTGGCCGTGTTTTTGCAAGACCCAGATGAAGAAATTGCCAAGATTGACAAGACT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000108023.10 ENSMUST00000130329.2 |
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