RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CCNDBP1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000023572

Ensembl transcript IDs: ENSMUST00000060455.15, ENSMUST00000099488.11, ENSMUST00000099489.9, ENSMUST00000171260.3

Found 153 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GCTTGGCAGGATCACCTCCCTGCCAGTTACATCAGTGAGATGAACTaGAGGTCATTAAAAACAAACAGAACTATAAAGTTACAGCATTTC +
Preference number: 1 (lower is better)
Translates to: AWQDHLPASYISEMN*RSLKTNRTIKLQHF
Trigger: GAAATGCTGTAACTTTATAGTTCTGTTTGTTTTTAATGACCTCCAGTTCATCTCACTGATGTAACTGGCAGGGAGGTGATCCTGCCAAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099488.11
3UTR TCA 90 bp AATGTAAGTTGCTTGGCAGGATCACCTCCCTGCCAGTTACATCAGTaGGATGAACTGGAGGTCATTAAAAACAAACAGAACTATAAAGTT +
Preference number: 1 (lower is better)
Translates to: NVSCLAGSPPCQLHQ*DELEVIKNKQNYKV
Trigger: AACTTTATAGTTCTGTTTGTTTTTAATGACCTCCAGTTCATCTCACTGATGTAACTGGCAGGGAGGTGATCCTGCCAAGCAACTTACATT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099488.11
3UTR-3UTR TCA 90 bp AGCTCAGAGCACAAGTTTATAGAAATTTGTGTCCAGCACAGAAGCATAGCACACACTGGATCGTGGGTGTaGGAGAGAGGGGAGAAAGAA +
Preference number: 2 (lower is better)
Translates to: SSEHKFIEICVQHRSIAHTGSWV*ERGEKE
Trigger: TTCTTTCTCCCCTCTCTCTCACACCCACGATCCAGT...GTGTGCTATGCTTCTGTGCTGGACACAAATTTCTATAAACTTGTGCTCTGAGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
3UTR-3UTR TCA 90 bp CACAAGTTTATAGAAATTTGTGTCCAGCACAGAAGCATAGCACACTGTATGATTACTGGATCGTGGGTGTaGGAGAGAGGGGAGAAAGAA +
Preference number: 2 (lower is better)
Translates to: HKFIEICVQHRSIAHCMITGSWV*ERGEKE
Trigger: TTCTTTCTCCCCTCTCTCTCACACCCACGATCCAGT...AATCATACAGTGTGCTATGCTTCTGTGCTGGACACAAATTTCTATAAACTTGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
3UTR-3UTR GCA 90 bp CAGCTCAGAGCACAAGTTTATAGAAATTTGTGTCCAGCACAGAAGCATAGCACACTTAAGGACAGAGGCTaGCTTTCTATCGAGCAAACA +
Preference number: 2 (lower is better)
Translates to: QLRAQVYRNLCPAQKHSTLKDRG*LSIEQT
Trigger: TGTTTGCTCGATAGAAAGGCAGCCTCTGTCCTTAAG...TGTGCTATGCTTCTGTGCTGGACACAAATTTCTATAAACTTGTGCTCTGAGCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
3UTR-3UTR CCA 90 bp TTTATAGAAATTTGTGTCCAGCACAGAAGCATAGCACACTGTATGATTGGTGGACAATCTCTCCTAGCCTaGAGTCTTGGTAACAATCTC +
Preference number: 2 (lower is better)
Translates to: FIEICVQHRSIAHCMIGGQSLLA*SLGNNL
Trigger: GAGATTGTTACCAAGACTCCAGGCTAGGAGAGATTG...TCCACCAATCATACAGTGTGCTATGCTTCTGTGCTGGACACAAATTTCTATAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
3UTR-3UTR CCA 90 bp ATATTGAAACCAATACATCTTGTAAAATGTAAGTTGCTTGGCAGGATCACCTCCATCAGTGAGATGAACTaGAGGTCATTAAAAACAAAC +
Preference number: 2 (lower is better)
Translates to: ILKPIHLVKCKLLGRITSISEMN*RSLKTN
Trigger: GTTTGTTTTTAATGACCTCCAGTTCATCTCACTGAT...GGAGGTGATCCTGCCAAGCAACTTACATTTTACAAGATGTATTGGTTTCAATAT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099488.11
3UTR CCA 72 bp TTGTGTCCAGCACAGAAGCATAGCACACTGTATGATTaGTGGATAACTGCAATCTCTCCTAGCCTGGAGTCT +
Preference number: 3 (lower is better)
Translates to: LCPAQKHSTLYD*WITAISPSLES
Trigger: AGACTCCAGGCTAGGAGAGATTGCAGTTATCCACCAATCATACAGTGTGCTATGCTTCTGTGCTGGACACAA
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
3UTR TCA 72 bp TGCTTGGCAGGATCACCTCCCTGCCAGTTACATCAGTaGGATGAACTGGAGGTCATTAAAAACAAACAGAAC +
Preference number: 3 (lower is better)
Translates to: CLAGSPPCQLHQ*DELEVIKNKQN
Trigger: GTTCTGTTTGTTTTTAATGACCTCCAGTTCATCTCACTGATGTAACTGGCAGGGAGGTGATCCTGCCAAGCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099488.11
3UTR GCA 72 bp TTAATGTTCCAAAGAACCTGCCATCCTGAAGAGTTCTaGACATTAATCAATCTTCCACCATCTATTTTATCA +
Preference number: 3 (lower is better)
Translates to: LMFQRTCHPEEF*TLINLPPSILS
Trigger: TGATAAAATAGATGGTGGAAGATTGATTAATGTGCAGAACTCTTCAGGATGGCAGGTTCTTTGGAACATTAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099488.11
CDS-3UTR GCA 90 bp CTTCTTAAGGACAGAGGCTGCCTTTCTATCGAGCAAACACCCTGTCAAAGCTCCAGCTCCTCTGCTAAGTaGCGGAGCTGCTCCAGAGGC +
Preference number: 4 (lower is better)
Translates to: LLKDRGCLSIEQTPCQSSSSSAK*RSCSRG
Trigger: GCCTCTGGAGCAGCTCCGGCACTTAGCAGAGGAGCT...GGAGCTTTGACAGGGTGTTTGCTCGATAGAAAGGCAGCCTCTGTCCTTAAGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060455.15
CDS-3UTR GCA 90 bp TTAAGGACAGAGGCTGCCTTTCTATCGAGCAAACACCCTGTCAAAGCTCCACTTCCAGGAGCTGAGCCATaGCGTCCACGATGTCCAGGG +
Preference number: 4 (lower is better)
Translates to: LRTEAAFLSSKHPVKAPLPGAEP*RPRCPG
Trigger: CCCTGGACATCGTGGACGGCATGGCTCAGCTCCTGG...AAGTGGAGCTTTGACAGGGTGTTTGCTCGATAGAAAGGCAGCCTCTGTCCTTAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
CDS-3UTR CCA 90 bp CCAATACATCTTGTAAAATGTAAGTTGCTTGGCAGGATCACCTCCCTGCCAGTTTCCTCCGCTGTCTCCTaGGCTTCGCCGACCCGTACT +
Preference number: 4 (lower is better)
Translates to: PIHLVKCKLLGRITSLPVSSAVS*ASPTRT
Trigger: AGTACGGGTCGGCGAAGCCCAGGAGACAGCGGAGGA...AACTGGCAGGGAGGTGATCCTGCCAAGCAACTTACATTTTACAAGATGTATTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099488.11
CDS-3UTR GCA 90 bp CCAATACATCTTGTAAAATGTAAGTTGCTTGGCAGGATCACCTCCCTGCCAGTTGCTGGGCTTGCTTGCTaGCAGACCAGCTCCAGGTTC +
Preference number: 4 (lower is better)
Translates to: PIHLVKCKLLGRITSLPVAGLAC*QTSSRF
Trigger: GAACCTGGAGCTGGTCTGGCAGCAAGCAAGCCCAGC...AACTGGCAGGGAGGTGATCCTGCCAAGCAACTTACATTTTACAAGATGTATTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099488.11
CDS-3UTR CCA 90 bp AGCTCAGAGCACAAGTTTATAGAAATTTGTGTCCAGCACAGAAGCATAGCACACTCCTCCGCTGTCTCCTaGGCTTCGCCGACCCGTACT +
Preference number: 4 (lower is better)
Translates to: SSEHKFIEICVQHRSIAHSSAVS*ASPTRT
Trigger: AGTACGGGTCGGCGAAGCCCAGGAGACAGCGGAGGA...GTGTGCTATGCTTCTGTGCTGGACACAAATTTCTATAAACTTGTGCTCTGAGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060455.15
CDS-3UTR TCA 90 bp AGGACAGAGGCTGCCTTTCTATCGAGCAAACACCCTGTCAAAGCTCCACTTCTAAGATCCGGATTTTCTTaGGTGAAGCTCGGGATGCTC +
Preference number: 4 (lower is better)
Translates to: RTEAAFLSSKHPVKAPLLRSGFS*VKLGML
Trigger: GAGCATCCCGAGCTTCACTCAAGAAAATCCGGATCT...TAGAAGTGGAGCTTTGACAGGGTGTTTGCTCGATAGAAAGGCAGCCTCTGTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
CDS-3UTR CCA 90 bp CTTCTTAAGGACAGAGGCTGCCTTTCTATCGAGCAAACACCCTGTCAAAGCTCCCCTCTGGGTTTCCTGTaGAGATGGCCATGGAAGTTT +
Preference number: 4 (lower is better)
Translates to: LLKDRGCLSIEQTPCQSSPLGFL*RWPWKF
Trigger: AAACTTCCATGGCCATCTCCACAGGAAACCCAGAGG...GGAGCTTTGACAGGGTGTTTGCTCGATAGAAAGGCAGCCTCTGTCCTTAAGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
CDS-3UTR CCA 90 bp TTAAGGACAGAGGCTGCCTTTCTATCGAGCAAACACCCTGTCAAAGCTCCACTTATCCGCACAGTGAGGTaGCACACAGGTGGGTATATG +
Preference number: 4 (lower is better)
Translates to: LRTEAAFLSSKHPVKAPLIRTVR*HTGGYM
Trigger: CATATACCCACCTGTGTGCCACCTCACTGTGCGGAT...AAGTGGAGCTTTGACAGGGTGTTTGCTCGATAGAAAGGCAGCCTCTGTCCTTAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
CDS-3UTR CCA 90 bp AGCACACTGTATGATTGGTGGATAACTGCAATCTCTCCTAGCCTGGAGTCTTGGATCCGCACAGTGAGGTaGCACACAGGTGGGTATATG +
Preference number: 4 (lower is better)
Translates to: STLYDWWITAISPSLESWIRTVR*HTGGYM
Trigger: CATATACCCACCTGTGTGCCACCTCACTGTGCGGAT...CCAAGACTCCAGGCTAGGAGAGATTGCAGTTATCCACCAATCATACAGTGTGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
CDS-3UTR TCA 90 bp TTCTTAAGGACAGAGGCTGCCTTTCTATCGAGCAAACACCCTGTCAAAGCTCCACCATTCTCAGTGCTCTaGGATGGAGCAGTAAGAAGC +
Preference number: 4 (lower is better)
Translates to: FLRTEAAFLSSKHPVKAPPFSVL*DGAVRS
Trigger: GCTTCTTACTGCTCCATCTCAGAGCACTGAGAATGG...TGGAGCTTTGACAGGGTGTTTGCTCGATAGAAAGGCAGCCTCTGTCCTTAAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
CDS-3UTR TCA 90 bp TTAAGGACAGAGGCTGCCTTTCTATCGAGCAAACACCCTGTCAAAGCTCCACTTCCATTCTCAGTGCTCTaGGATGGAGCAGTAAGAAGC +
Preference number: 4 (lower is better)
Translates to: LRTEAAFLSSKHPVKAPLPFSVL*DGAVRS
Trigger: GCTTCTTACTGCTCCATCTCAGAGCACTGAGAATGG...AAGTGGAGCTTTGACAGGGTGTTTGCTCGATAGAAAGGCAGCCTCTGTCCTTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
CDS-3UTR TCA 90 bp AGCACACTGTATGATTGGTGGATAACTGCAATCTCTCCTAGCCTGGAGTCTTGGAGATCCGGATTTTCTTaGGTGAAGCTCGGGATGCTC +
Preference number: 4 (lower is better)
Translates to: STLYDWWITAISPSLESWRSGFS*VKLGML
Trigger: GAGCATCCCGAGCTTCACTCAAGAAAATCCGGATCT...CCAAGACTCCAGGCTAGGAGAGATTGCAGTTATCCACCAATCATACAGTGTGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
CDS-3UTR TCA 90 bp TTAAGGACAGAGGCTGCCTTTCTATCGAGCAAACACCCTGTCAAAGCTCCACTTCATCCACACTGGGGCTaGTCTCATCAGAAATGTCCA +
Preference number: 4 (lower is better)
Translates to: LRTEAAFLSSKHPVKAPLHPHWG*SHQKCP
Trigger: TGGACATTTCTGATGAGATCAGCCCCAGTGTGGATG...AAGTGGAGCTTTGACAGGGTGTTTGCTCGATAGAAAGGCAGCCTCTGTCCTTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
CDS-3UTR GCA 90 bp TTTATAGAAATTTGTGTCCAGCACAGAAGCATAGCACACTGTATGATTGGTGGAGCTAAGTGCCGGAGCTaGTCCAGAGGCGGAGCAAGG +
Preference number: 4 (lower is better)
Translates to: FIEICVQHRSIAHCMIGGAKCRS*SRGGAR
Trigger: CCTTGCTCCGCCTCTGGAGCAGCTCCGGCACTTAGC...TCCACCAATCATACAGTGTGCTATGCTTCTGTGCTGGACACAAATTTCTATAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060455.15
CDS-3UTR CCA 90 bp AGGACAGAGGCTGCCTTTCTATCGAGCAAACACCCTGTCAAAGCTCCACTTCTACTGTGGAGATGGCCATaGAAGTTTAGAGAAGTGCGT +
Preference number: 4 (lower is better)
Translates to: RTEAAFLSSKHPVKAPLLLWRWP*KFREVR
Trigger: ACGCACTTCTCTAAACTTCCATGGCCATCTCCACAG...TAGAAGTGGAGCTTTGACAGGGTGTTTGCTCGATAGAAAGGCAGCCTCTGTCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
CDS-3UTR CCA 90 bp CTTCTTAAGGACAGAGGCTGCCTTTCTATCGAGCAAACACCCTGTCAAAGCTCCCTGTGGAGATGGCCATaGAAGTTTAGAGAAGTGCGT +
Preference number: 4 (lower is better)
Translates to: LLKDRGCLSIEQTPCQSSLWRWP*KFREVR
Trigger: ACGCACTTCTCTAAACTTCCATGGCCATCTCCACAG...GGAGCTTTGACAGGGTGTTTGCTCGATAGAAAGGCAGCCTCTGTCCTTAAGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
CDS-3UTR CCA 90 bp TTCTTAAGGACAGAGGCTGCCTTTCTATCGAGCAAACACCCTGTCAAAGCTCCACCTCTGGGTTTCCTGTaGAGATGGCCATGGAAGTTT +
Preference number: 4 (lower is better)
Translates to: FLRTEAAFLSSKHPVKAPPLGFL*RWPWKF
Trigger: AAACTTCCATGGCCATCTCCACAGGAAACCCAGAGG...TGGAGCTTTGACAGGGTGTTTGCTCGATAGAAAGGCAGCCTCTGTCCTTAAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
CDS-3UTR CCA 90 bp CTTCTTAAGGACAGAGGCTGCCTTTCTATCGAGCAAACACCCTGTCAAAGCTCCCTCAGTGCTCTGAGATaGAGCAGTAAGAAGCACTTC +
Preference number: 4 (lower is better)
Translates to: LLKDRGCLSIEQTPCQSSLSALR*SSKKHF
Trigger: GAAGTGCTTCTTACTGCTCCATCTCAGAGCACTGAG...GGAGCTTTGACAGGGTGTTTGCTCGATAGAAAGGCAGCCTCTGTCCTTAAGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
CDS-3UTR TCA 90 bp AGGACAGAGGCTGCCTTTCTATCGAGCAAACACCCTGTCAAAGCTCCACTTCTACTGTTGACATGCGACTaGGACACTATTGCAGGAAAT +
Preference number: 4 (lower is better)
Translates to: RTEAAFLSSKHPVKAPLLLLTCD*DTIAGN
Trigger: ATTTCCTGCAATAGTGTCTCAGTCGCATGTCAACAG...TAGAAGTGGAGCTTTGACAGGGTGTTTGCTCGATAGAAAGGCAGCCTCTGTCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
CDS-3UTR GCA 90 bp AAGTTAATGTTCCAAAGAACCTGCCATCCTGAAGAGTTCTGCACATTAATCAATGCTAAGTGCCGGAGCTaGTCCAGAGGCGGAGCAAGG +
Preference number: 4 (lower is better)
Translates to: KLMFQRTCHPEEFCTLINAKCRS*SRGGAR
Trigger: CCTTGCTCCGCCTCTGGAGCAGCTCCGGCACTTAGC...ATTGATTAATGTGCAGAACTCTTCAGGATGGCAGGTTCTTTGGAACATTAACTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099488.11
CDS-3UTR GCA 90 bp CTTCTTAAGGACAGAGGCTGCCTTTCTATCGAGCAAACACCCTGTCAAAGCTCCGGAAGTTTAGAGAAGTaGGTTGTCAGAACAGTGGCT +
Preference number: 4 (lower is better)
Translates to: LLKDRGCLSIEQTPCQSSGSLEK*VVRTVA
Trigger: AGCCACTGTTCTGACAACGCACTTCTCTAAACTTCC...GGAGCTTTGACAGGGTGTTTGCTCGATAGAAAGGCAGCCTCTGTCCTTAAGAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
CDS-3UTR GCA 90 bp CACAAGTTTATAGAAATTTGTGTCCAGCACAGAAGCATAGCACACTGTATGATTCCAGGAGCTGAGCCATaGCGTCCACGATGTCCAGGG +
Preference number: 4 (lower is better)
Translates to: HKFIEICVQHRSIAHCMIPGAEP*RPRCPG
Trigger: CCCTGGACATCGTGGACGGCATGGCTCAGCTCCTGG...AATCATACAGTGTGCTATGCTTCTGTGCTGGACACAAATTTCTATAAACTTGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
CDS-3UTR GCA 90 bp AAGTTAATGTTCCAAAGAACCTGCCATCCTGAAGAGTTCTGCACATTAATCAATCCAGGAGCTGAGCCATaGCGTCCACGATGTCCAGGG +
Preference number: 4 (lower is better)
Translates to: KLMFQRTCHPEEFCTLINPGAEP*RPRCPG
Trigger: CCCTGGACATCGTGGACGGCATGGCTCAGCTCCTGG...ATTGATTAATGTGCAGAACTCTTCAGGATGGCAGGTTCTTTGGAACATTAACTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099488.11
CDS-3UTR GCA 90 bp CTTCTTAAGGACAGAGGCTGCCTTTCTATCGAGCAAACACCCTGTCAAAGCTCCCGACTGAGACACTATTaGAGGAAATCAGGTCACCAT +
Preference number: 4 (lower is better)
Translates to: LLKDRGCLSIEQTPCQSSRLRHY*RKSGHH
Trigger: ATGGTGACCTGATTTCCTGCAATAGTGTCTCAGTCG...GGAGCTTTGACAGGGTGTTTGCTCGATAGAAAGGCAGCCTCTGTCCTTAAGAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
CDS-3UTR GCA 90 bp CTTCTTAAGGACAGAGGCTGCCTTTCTATCGAGCAAACACCCTGTCAAAGCTCCCAGCATCAAAAGGGCTaGGGCTTTGTTATCTTTTGG +
Preference number: 4 (lower is better)
Translates to: LLKDRGCLSIEQTPCQSSQHQKG*GFVIFW
Trigger: CCAAAAGATAACAAAGCCGCAGCCCTTTTGATGCTG...GGAGCTTTGACAGGGTGTTTGCTCGATAGAAAGGCAGCCTCTGTCCTTAAGAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
CDS-3UTR GCA 90 bp AGGACAGAGGCTGCCTTTCTATCGAGCAAACACCCTGTCAAAGCTCCACTTCTACAGCATCAAAAGGGCTaGGGCTTTGTTATCTTTTGG +
Preference number: 4 (lower is better)
Translates to: RTEAAFLSSKHPVKAPLLQHQKG*GFVIFW
Trigger: CCAAAAGATAACAAAGCCGCAGCCCTTTTGATGCTG...TAGAAGTGGAGCTTTGACAGGGTGTTTGCTCGATAGAAAGGCAGCCTCTGTCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
CDS-3UTR GCA 90 bp CTTCTTAAGGACAGAGGCTGCCTTTCTATCGAGCAAACACCCTGTCAAAGCTCCGGGGCTCACGTGACTTaGTTTTGTAATTTCAAGAGC +
Preference number: 4 (lower is better)
Translates to: LLKDRGCLSIEQTPCQSSGAHVT*FCNFKS
Trigger: GCTCTTGAAATTACAAAAGCAAGTCACGTGAGCCCC...GGAGCTTTGACAGGGTGTTTGCTCGATAGAAAGGCAGCCTCTGTCCTTAAGAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
CDS-3UTR CCA 90 bp AGGACAGAGGCTGCCTTTCTATCGAGCAAACACCCTGTCAAAGCTCCACTTCTAGGTTTCCTGTGGAGATaGCCATGGAAGTTTAGAGAA +
Preference number: 4 (lower is better)
Translates to: RTEAAFLSSKHPVKAPLLGFLWR*PWKFRE
Trigger: TTCTCTAAACTTCCATGGCCATCTCCACAGGAAACC...TAGAAGTGGAGCTTTGACAGGGTGTTTGCTCGATAGAAAGGCAGCCTCTGTCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
CDS-3UTR CCA 90 bp TTCTTAAGGACAGAGGCTGCCTTTCTATCGAGCAAACACCCTGTCAAAGCTCCACTCAGTGCTCTGAGATaGAGCAGTAAGAAGCACTTC +
Preference number: 4 (lower is better)
Translates to: FLRTEAAFLSSKHPVKAPLSALR*SSKKHF
Trigger: GAAGTGCTTCTTACTGCTCCATCTCAGAGCACTGAG...TGGAGCTTTGACAGGGTGTTTGCTCGATAGAAAGGCAGCCTCTGTCCTTAAGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
CDS-3UTR CCA 90 bp TTCTTAAGGACAGAGGCTGCCTTTCTATCGAGCAAACACCCTGTCAAAGCTCCAACAATGTCATCCAGCTaGGCCACCTCATCCTTCTTT +
Preference number: 4 (lower is better)
Translates to: FLRTEAAFLSSKHPVKAPTMSSS*ATSSFF
Trigger: AAAGAAGGATGAGGTGGCCCAGCTGGATGACATTGT...TGGAGCTTTGACAGGGTGTTTGCTCGATAGAAAGGCAGCCTCTGTCCTTAAGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
CDS-3UTR CCA 90 bp CCAATACATCTTGTAAAATGTAAGTTGCTTGGCAGGATCACCTCCCTGCCAGTTATCCGCACAGTGAGGTaGCACACAGGTGGGTATATG +
Preference number: 4 (lower is better)
Translates to: PIHLVKCKLLGRITSLPVIRTVR*HTGGYM
Trigger: CATATACCCACCTGTGTGCCACCTCACTGTGCGGAT...AACTGGCAGGGAGGTGATCCTGCCAAGCAACTTACATTTTACAAGATGTATTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099488.11
CDS-3UTR TCA 90 bp CCAATACATCTTGTAAAATGTAAGTTGCTTGGCAGGATCACCTCCCTGCCAGTTCCATTCTCAGTGCTCTaGGATGGAGCAGTAAGAAGC +
Preference number: 4 (lower is better)
Translates to: PIHLVKCKLLGRITSLPVPFSVL*DGAVRS
Trigger: GCTTCTTACTGCTCCATCTCAGAGCACTGAGAATGG...AACTGGCAGGGAGGTGATCCTGCCAAGCAACTTACATTTTACAAGATGTATTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099488.11
CDS-3UTR GCA 90 bp ATATTGAAACCAATACATCTTGTAAAATGTAAGTTGCTTGGCAGGATCACCTCCAGCTCCTCTGCTAAGTaGCGGAGCTGCTCCAGAGGC +
Preference number: 4 (lower is better)
Translates to: ILKPIHLVKCKLLGRITSSSSAK*RSCSRG
Trigger: GCCTCTGGAGCAGCTCCGGCACTTAGCAGAGGAGCT...GGAGGTGATCCTGCCAAGCAACTTACATTTTACAAGATGTATTGGTTTCAATAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099488.11
CDS-3UTR GCA 90 bp AGGACAGAGGCTGCCTTTCTATCGAGCAAACACCCTGTCAAAGCTCCACTTCTACATTCTTCTACAGCCTaGTCCATTTCTTCATGTGCA +
Preference number: 4 (lower is better)
Translates to: RTEAAFLSSKHPVKAPLLHSSTA*SISSCA
Trigger: TGCACATGAAGAAATGGAGCAGGCTGTAGAAGAATG...TAGAAGTGGAGCTTTGACAGGGTGTTTGCTCGATAGAAAGGCAGCCTCTGTCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
CDS-3UTR GCA 90 bp TTAAGGACAGAGGCTGCCTTTCTATCGAGCAAACACCCTGTCAAAGCTCCACTTGGGGCTCACGTGACTTaGTTTTGTAATTTCAAGAGC +
Preference number: 4 (lower is better)
Translates to: LRTEAAFLSSKHPVKAPLGAHVT*FCNFKS
Trigger: GCTCTTGAAATTACAAAAGCAAGTCACGTGAGCCCC...AAGTGGAGCTTTGACAGGGTGTTTGCTCGATAGAAAGGCAGCCTCTGTCCTTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
CDS-3UTR GCA 90 bp ATATTGAAACCAATACATCTTGTAAAATGTAAGTTGCTTGGCAGGATCACCTCCATCGCTGGGCTTGCTTaGTGCCAGACCAGCTCCAGG +
Preference number: 4 (lower is better)
Translates to: ILKPIHLVKCKLLGRITSIAGLA*CQTSSR
Trigger: CCTGGAGCTGGTCTGGCAGCAAGCAAGCCCAGCGAT...GGAGGTGATCCTGCCAAGCAACTTACATTTTACAAGATGTATTGGTTTCAATAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099488.11
CDS-3UTR CCA 90 bp CTCAGAGCACAAGTTTATAGAAATTTGTGTCCAGCACAGAAGCATAGCACACTGTGCTCACAGATCCTCTaGGTTTCCTGTGGAGATGGC +
Preference number: 4 (lower is better)
Translates to: LRAQVYRNLCPAQKHSTLCSQIL*VSCGDG
Trigger: GCCATCTCCACAGGAAACCCAGAGGATCTGTGAGCA...CAGTGTGCTATGCTTCTGTGCTGGACACAAATTTCTATAAACTTGTGCTCTGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
CDS-3UTR CCA 90 bp TTCTTAAGGACAGAGGCTGCCTTTCTATCGAGCAAACACCCTGTCAAAGCTCCACAAAATCCACACTCTTaGTCAGCATCAAAAGGGCTG +
Preference number: 4 (lower is better)
Translates to: FLRTEAAFLSSKHPVKAPQNPHS*SASKGL
Trigger: CAGCCCTTTTGATGCTGACCAAGAGTGTGGATTTTG...TGGAGCTTTGACAGGGTGTTTGCTCGATAGAAAGGCAGCCTCTGTCCTTAAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
CDS-3UTR CCA 90 bp CCAATACATCTTGTAAAATGTAAGTTGCTTGGCAGGATCACCTCCCTGCCAGTTATGAGTCCCGATTGCTaGGAAGCCCTAACACACCAT +
Preference number: 4 (lower is better)
Translates to: PIHLVKCKLLGRITSLPVMSPDC*EALTHH
Trigger: ATGGTGTGTTAGGGCTTCCCAGCAATCGGGACTCAT...AACTGGCAGGGAGGTGATCCTGCCAAGCAACTTACATTTTACAAGATGTATTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099488.11
CDS-3UTR CCA 90 bp CCAATACATCTTGTAAAATGTAAGTTGCTTGGCAGGATCACCTCCCTGCCAGTTGAGGTGGCACACAGGTaGGTATATGCTCAGAACCAA +
Preference number: 4 (lower is better)
Translates to: PIHLVKCKLLGRITSLPVEVAHR*VYAQNQ
Trigger: TTGGTTCTGAGCATATACCCACCTGTGTGCCACCTC...AACTGGCAGGGAGGTGATCCTGCCAAGCAACTTACATTTTACAAGATGTATTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099488.11
CDS-3UTR TCA 90 bp AGCTCAGAGCACAAGTTTATAGAAATTTGTGTCCAGCACAGAAGCATAGCACACCCAGGCACGGGATTATaGGTTCTTGATCTTCCTCTG +
Preference number: 4 (lower is better)
Translates to: SSEHKFIEICVQHRSIAHPGTGL*VLDLPL
Trigger: CAGAGGAAGATCAAGAACTCATAATCCCGTGCCTGG...GTGTGCTATGCTTCTGTGCTGGACACAAATTTCTATAAACTTGTGCTCTGAGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
CDS-3UTR CCA 90 bp CAGCTCAGAGCACAAGTTTATAGAAATTTGTGTCCAGCACAGAAGCATAGCACAATGAGTCCCGATTGCTaGGAAGCCCTAACACACCAT +
Preference number: 4 (lower is better)
Translates to: QLRAQVYRNLCPAQKHSTMSPDC*EALTHH
Trigger: ATGGTGTGTTAGGGCTTCCCAGCAATCGGGACTCAT...TGTGCTATGCTTCTGTGCTGGACACAAATTTCTATAAACTTGTGCTCTGAGCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
CDS-3UTR CCA 90 bp CCAATACATCTTGTAAAATGTAAGTTGCTTGGCAGGATCACCTCCCTGCCAGTTACAATGTCATCCAGCTaGGCCACCTCATCCTTCTTT +
Preference number: 4 (lower is better)
Translates to: PIHLVKCKLLGRITSLPVTMSSS*ATSSFF
Trigger: AAAGAAGGATGAGGTGGCCCAGCTGGATGACATTGT...AACTGGCAGGGAGGTGATCCTGCCAAGCAACTTACATTTTACAAGATGTATTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099488.11
CDS-3UTR CCA 90 bp AAGTTAATGTTCCAAAGAACCTGCCATCCTGAAGAGTTCTGCACATTAATCAATGTTACTCCAGCGCTGTaGGCACAGAGGCAAGGCGAT +
Preference number: 4 (lower is better)
Translates to: KLMFQRTCHPEEFCTLINVTPAL*AQRQGD
Trigger: ATCGCCTTGCCTCTGTGCCCACAGCGCTGGAGTAAC...ATTGATTAATGTGCAGAACTCTTCAGGATGGCAGGTTCTTTGGAACATTAACTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099488.11
CDS-3UTR GCA 90 bp CCAATACATCTTGTAAAATGTAAGTTGCTTGGCAGGATCACCTCCCTGCCAGTTCAGCATCAAAAGGGCTaGGGCTTTGTTATCTTTTGG +
Preference number: 4 (lower is better)
Translates to: PIHLVKCKLLGRITSLPVQHQKG*GFVIFW
Trigger: CCAAAAGATAACAAAGCCGCAGCCCTTTTGATGCTG...AACTGGCAGGGAGGTGATCCTGCCAAGCAACTTACATTTTACAAGATGTATTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000099488.11
CDS-3UTR CCA 90 bp CCAATACATCTTGTAAAATGTAAGTTGCTTGGCAGGATCACCTCCCTGCCAGTTGGTTTCCTGTGGAGATaGCCATGGAAGTTTAGAGAA +
Preference number: 4 (lower is better)
Translates to: PIHLVKCKLLGRITSLPVGFLWR*PWKFRE
Trigger: TTCTCTAAACTTCCATGGCCATCTCCACAGGAAACC...AACTGGCAGGGAGGTGATCCTGCCAAGCAACTTACATTTTACAAGATGTATTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099488.11
CDS-3UTR CCA 90 bp CCAATACATCTTGTAAAATGTAAGTTGCTTGGCAGGATCACCTCCCTGCCAGTTGGCTTTGTTATCTTTTaGGATCTCAGGCACCTGTTG +
Preference number: 4 (lower is better)
Translates to: PIHLVKCKLLGRITSLPVGFVIF*DLRHLL
Trigger: CAACAGGTGCCTGAGATCCCAAAAGATAACAAAGCC...AACTGGCAGGGAGGTGATCCTGCCAAGCAACTTACATTTTACAAGATGTATTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099488.11
CDS-3UTR CCA 90 bp AGCTCAGAGCACAAGTTTATAGAAATTTGTGTCCAGCACAGAAGCATAGCACACACAATGTCATCCAGCTaGGCCACCTCATCCTTCTTT +
Preference number: 4 (lower is better)
Translates to: SSEHKFIEICVQHRSIAHTMSSS*ATSSFF
Trigger: AAAGAAGGATGAGGTGGCCCAGCTGGATGACATTGT...GTGTGCTATGCTTCTGTGCTGGACACAAATTTCTATAAACTTGTGCTCTGAGCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
CDS-3UTR TCA 90 bp CCAATACATCTTGTAAAATGTAAGTTGCTTGGCAGGATCACCTCCCTGCCAGTTGGGATTATGAGTTCTTaGTCTTCCTCTGACCAGTAT +
Preference number: 4 (lower is better)
Translates to: PIHLVKCKLLGRITSLPVGIMSS*SSSDQY
Trigger: ATACTGGTCAGAGGAAGATCAAGAACTCATAATCCC...AACTGGCAGGGAGGTGATCCTGCCAAGCAACTTACATTTTACAAGATGTATTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099488.11
CDS-3UTR TCA 90 bp TTTATAGAAATTTGTGTCCAGCACAGAAGCATAGCACACTGTATGATTGGTGGACCAGGCACGGGATTATaGGTTCTTGATCTTCCTCTG +
Preference number: 4 (lower is better)
Translates to: FIEICVQHRSIAHCMIGGPGTGL*VLDLPL
Trigger: CAGAGGAAGATCAAGAACTCATAATCCCGTGCCTGG...TCCACCAATCATACAGTGTGCTATGCTTCTGTGCTGGACACAAATTTCTATAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
CDS-3UTR TCA 90 bp CAAGTTTATAGAAATTTGTGTCCAGCACAGAAGCATAGCACACTGTATGATTGGCATCCACACTGGGGCTaGTCTCATCAGAAATGTCCA +
Preference number: 4 (lower is better)
Translates to: QVYRNLCPAQKHSTLYDWHPHWG*SHQKCP
Trigger: TGGACATTTCTGATGAGATCAGCCCCAGTGTGGATG...CCAATCATACAGTGTGCTATGCTTCTGTGCTGGACACAAATTTCTATAAACTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
CDS-3UTR TCA 90 bp ATATTGAAACCAATACATCTTGTAAAATGTAAGTTGCTTGGCAGGATCACCTCCCAGCTCCAGGTTCAGTaGGTGAACTGTCTCAGGGTA +
Preference number: 4 (lower is better)
Translates to: ILKPIHLVKCKLLGRITSQLQVQ*VNCLRV
Trigger: TACCCTGAGACAGTTCACTCACTGAACCTGGAGCTG...GGAGGTGATCCTGCCAAGCAACTTACATTTTACAAGATGTATTGGTTTCAATAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099488.11
CDS-3UTR CCA 90 bp CAGCTCAGAGCACAAGTTTATAGAAATTTGTGTCCAGCACAGAAGCATAGCACAGGTTTCCTGTGGAGATaGCCATGGAAGTTTAGAGAA +
Preference number: 4 (lower is better)
Translates to: QLRAQVYRNLCPAQKHSTGFLWR*PWKFRE
Trigger: TTCTCTAAACTTCCATGGCCATCTCCACAGGAAACC...TGTGCTATGCTTCTGTGCTGGACACAAATTTCTATAAACTTGTGCTCTGAGCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
CDS-3UTR CCA 90 bp CACAAGTTTATAGAAATTTGTGTCCAGCACAGAAGCATAGCACACTGTATGATTTGCTCACAGATCCTCTaGGTTTCCTGTGGAGATGGC +
Preference number: 4 (lower is better)
Translates to: HKFIEICVQHRSIAHCMICSQIL*VSCGDG
Trigger: GCCATCTCCACAGGAAACCCAGAGGATCTGTGAGCA...AATCATACAGTGTGCTATGCTTCTGTGCTGGACACAAATTTCTATAAACTTGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
CDS-3UTR CCA 90 bp ATATTGAAACCAATACATCTTGTAAAATGTAAGTTGCTTGGCAGGATCACCTCCTGCTCACAGATCCTCTaGGTTTCCTGTGGAGATGGC +
Preference number: 4 (lower is better)
Translates to: ILKPIHLVKCKLLGRITSCSQIL*VSCGDG
Trigger: GCCATCTCCACAGGAAACCCAGAGGATCTGTGAGCA...GGAGGTGATCCTGCCAAGCAACTTACATTTTACAAGATGTATTGGTTTCAATAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099488.11
CDS-3UTR CCA 90 bp AGCTCAGAGCACAAGTTTATAGAAATTTGTGTCCAGCACAGAAGCATAGCACACGGCTTTGTTATCTTTTaGGATCTCAGGCACCTGTTG +
Preference number: 4 (lower is better)
Translates to: SSEHKFIEICVQHRSIAHGFVIF*DLRHLL
Trigger: CAACAGGTGCCTGAGATCCCAAAAGATAACAAAGCC...GTGTGCTATGCTTCTGTGCTGGACACAAATTTCTATAAACTTGTGCTCTGAGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
CDS-3UTR CCA 90 bp CAAGTTTATAGAAATTTGTGTCCAGCACAGAAGCATAGCACACTGTATGATTGGATGAGTCCCGATTGCTaGGAAGCCCTAACACACCAT +
Preference number: 4 (lower is better)
Translates to: QVYRNLCPAQKHSTLYDWMSPDC*EALTHH
Trigger: ATGGTGTGTTAGGGCTTCCCAGCAATCGGGACTCAT...CCAATCATACAGTGTGCTATGCTTCTGTGCTGGACACAAATTTCTATAAACTTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
CDS-3UTR TCA 90 bp AGCTCAGAGCACAAGTTTATAGAAATTTGTGTCCAGCACAGAAGCATAGCACACTCACTGCTGCCTCATTaGGTCTTCTCCAAAACATTT +
Preference number: 4 (lower is better)
Translates to: SSEHKFIEICVQHRSIAHSLLPH*VFSKTF
Trigger: AAATGTTTTGGAGAAGACTCAATGAGGCAGCAGTGA...GTGTGCTATGCTTCTGTGCTGGACACAAATTTCTATAAACTTGTGCTCTGAGCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060455.15
CDS-3UTR TCA 90 bp CTCAGAGCACAAGTTTATAGAAATTTGTGTCCAGCACAGAAGCATAGCACACTGGGGATTATGAGTTCTTaGTCTTCCTCTGACCAGTAT +
Preference number: 4 (lower is better)
Translates to: LRAQVYRNLCPAQKHSTLGIMSS*SSSDQY
Trigger: ATACTGGTCAGAGGAAGATCAAGAACTCATAATCCC...CAGTGTGCTATGCTTCTGTGCTGGACACAAATTTCTATAAACTTGTGCTCTGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
CDS-3UTR TCA 90 bp AAGTTAATGTTCCAAAGAACCTGCCATCCTGAAGAGTTCTGCACATTAATCAATCCAGGCACGGGATTATaGGTTCTTGATCTTCCTCTG +
Preference number: 4 (lower is better)
Translates to: KLMFQRTCHPEEFCTLINPGTGL*VLDLPL
Trigger: CAGAGGAAGATCAAGAACTCATAATCCCGTGCCTGG...ATTGATTAATGTGCAGAACTCTTCAGGATGGCAGGTTCTTTGGAACATTAACTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099488.11
CDS-3UTR TCA 90 bp ATATTGAAACCAATACATCTTGTAAAATGTAAGTTGCTTGGCAGGATCACCTCCAGATCCGGATTTTCTTaGGTGAAGCTCGGGATGCTC +
Preference number: 4 (lower is better)
Translates to: ILKPIHLVKCKLLGRITSRSGFS*VKLGML
Trigger: GAGCATCCCGAGCTTCACTCAAGAAAATCCGGATCT...GGAGGTGATCCTGCCAAGCAACTTACATTTTACAAGATGTATTGGTTTCAATAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099488.11
CDS-3UTR TCA 90 bp AAGTTAATGTTCCAAAGAACCTGCCATCCTGAAGAGTTCTGCACATTAATCAATCATCCACACTGGGGCTaGTCTCATCAGAAATGTCCA +
Preference number: 4 (lower is better)
Translates to: KLMFQRTCHPEEFCTLINHPHWG*SHQKCP
Trigger: TGGACATTTCTGATGAGATCAGCCCCAGTGTGGATG...ATTGATTAATGTGCAGAACTCTTCAGGATGGCAGGTTCTTTGGAACATTAACTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099488.11
CDS-3UTR GCA 90 bp CAGCTCAGAGCACAAGTTTATAGAAATTTGTGTCCAGCACAGAAGCATAGCACACATTCTTCTACAGCCTaGTCCATTTCTTCATGTGCA +
Preference number: 4 (lower is better)
Translates to: QLRAQVYRNLCPAQKHSTHSSTA*SISSCA
Trigger: TGCACATGAAGAAATGGAGCAGGCTGTAGAAGAATG...TGTGCTATGCTTCTGTGCTGGACACAAATTTCTATAAACTTGTGCTCTGAGCTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
CDS-3UTR CCA 90 bp AAGTTAATGTTCCAAAGAACCTGCCATCCTGAAGAGTTCTGCACATTAATCAATCCTCTGGGTTTCCTGTaGAGATGGCCATGGAAGTTT +
Preference number: 4 (lower is better)
Translates to: KLMFQRTCHPEEFCTLINPLGFL*RWPWKF
Trigger: AAACTTCCATGGCCATCTCCACAGGAAACCCAGAGG...ATTGATTAATGTGCAGAACTCTTCAGGATGGCAGGTTCTTTGGAACATTAACTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099488.11
CDS-3UTR CCA 90 bp CACAAGTTTATAGAAATTTGTGTCCAGCACAGAAGCATAGCACACTGTATGATTGAGGTGGCACACAGGTaGGTATATGCTCAGAACCAA +
Preference number: 4 (lower is better)
Translates to: HKFIEICVQHRSIAHCMIEVAHR*VYAQNQ
Trigger: TTGGTTCTGAGCATATACCCACCTGTGTGCCACCTC...AATCATACAGTGTGCTATGCTTCTGTGCTGGACACAAATTTCTATAAACTTGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
CDS-3UTR TCA 90 bp TTTATAGAAATTTGTGTCCAGCACAGAAGCATAGCACACTGTATGATTGGTGGACTGTTGACATGCGACTaGGACACTATTGCAGGAAAT +
Preference number: 4 (lower is better)
Translates to: FIEICVQHRSIAHCMIGGLLTCD*DTIAGN
Trigger: ATTTCCTGCAATAGTGTCTCAGTCGCATGTCAACAG...TCCACCAATCATACAGTGTGCTATGCTTCTGTGCTGGACACAAATTTCTATAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
CDS-3UTR GCA 90 bp CAAGTTTATAGAAATTTGTGTCCAGCACAGAAGCATAGCACACTGTATGATTGGCGACTGAGACACTATTaGAGGAAATCAGGTCACCAT +
Preference number: 4 (lower is better)
Translates to: QVYRNLCPAQKHSTLYDWRLRHY*RKSGHH
Trigger: ATGGTGACCTGATTTCCTGCAATAGTGTCTCAGTCG...CCAATCATACAGTGTGCTATGCTTCTGTGCTGGACACAAATTTCTATAAACTTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
CDS-3UTR CCA 90 bp AAGTTAATGTTCCAAAGAACCTGCCATCCTGAAGAGTTCTGCACATTAATCAATCTGTGGAGATGGCCATaGAAGTTTAGAGAAGTGCGT +
Preference number: 4 (lower is better)
Translates to: KLMFQRTCHPEEFCTLINLWRWP*KFREVR
Trigger: ACGCACTTCTCTAAACTTCCATGGCCATCTCCACAG...ATTGATTAATGTGCAGAACTCTTCAGGATGGCAGGTTCTTTGGAACATTAACTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099488.11
CDS-3UTR CCA 90 bp ATATTGAAACCAATACATCTTGTAAAATGTAAGTTGCTTGGCAGGATCACCTCCCTCAGTGCTCTGAGATaGAGCAGTAAGAAGCACTTC +
Preference number: 4 (lower is better)
Translates to: ILKPIHLVKCKLLGRITSLSALR*SSKKHF
Trigger: GAAGTGCTTCTTACTGCTCCATCTCAGAGCACTGAG...GGAGGTGATCCTGCCAAGCAACTTACATTTTACAAGATGTATTGGTTTCAATAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099488.11
CDS-3UTR CCA 90 bp CAAGTTTATAGAAATTTGTGTCCAGCACAGAAGCATAGCACACTGTATGATTGGGGCTTTGTTATCTTTTaGGATCTCAGGCACCTGTTG +
Preference number: 4 (lower is better)
Translates to: QVYRNLCPAQKHSTLYDWGFVIF*DLRHLL
Trigger: CAACAGGTGCCTGAGATCCCAAAAGATAACAAAGCC...CCAATCATACAGTGTGCTATGCTTCTGTGCTGGACACAAATTTCTATAAACTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
CDS-3UTR CCA 90 bp TTTATAGAAATTTGTGTCCAGCACAGAAGCATAGCACACTGTATGATTGGTGGACAAAATCCACACTCTTaGTCAGCATCAAAAGGGCTG +
Preference number: 4 (lower is better)
Translates to: FIEICVQHRSIAHCMIGGQNPHS*SASKGL
Trigger: CAGCCCTTTTGATGCTGACCAAGAGTGTGGATTTTG...TCCACCAATCATACAGTGTGCTATGCTTCTGTGCTGGACACAAATTTCTATAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
CDS-3UTR TCA 90 bp AAGTTAATGTTCCAAAGAACCTGCCATCCTGAAGAGTTCTGCACATTAATCAATCTGTTGACATGCGACTaGGACACTATTGCAGGAAAT +
Preference number: 4 (lower is better)
Translates to: KLMFQRTCHPEEFCTLINLLTCD*DTIAGN
Trigger: ATTTCCTGCAATAGTGTCTCAGTCGCATGTCAACAG...ATTGATTAATGTGCAGAACTCTTCAGGATGGCAGGTTCTTTGGAACATTAACTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099488.11
CDS-3UTR TCA 90 bp CAAGTTTATAGAAATTTGTGTCCAGCACAGAAGCATAGCACACTGTATGATTGGGGGATTATGAGTTCTTaGTCTTCCTCTGACCAGTAT +
Preference number: 4 (lower is better)
Translates to: QVYRNLCPAQKHSTLYDWGIMSS*SSSDQY
Trigger: ATACTGGTCAGAGGAAGATCAAGAACTCATAATCCC...CCAATCATACAGTGTGCTATGCTTCTGTGCTGGACACAAATTTCTATAAACTTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
CDS-3UTR GCA 90 bp AAGTTAATGTTCCAAAGAACCTGCCATCCTGAAGAGTTCTGCACATTAATCAATCGACTGAGACACTATTaGAGGAAATCAGGTCACCAT +
Preference number: 4 (lower is better)
Translates to: KLMFQRTCHPEEFCTLINRLRHY*RKSGHH
Trigger: ATGGTGACCTGATTTCCTGCAATAGTGTCTCAGTCG...ATTGATTAATGTGCAGAACTCTTCAGGATGGCAGGTTCTTTGGAACATTAACTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099488.11
CDS-3UTR GCA 90 bp CAGCTCAGAGCACAAGTTTATAGAAATTTGTGTCCAGCACAGAAGCATAGCACACTCCATTTCTTCATGTaGATCTTTCACAAAATCCAC +
Preference number: 4 (lower is better)
Translates to: QLRAQVYRNLCPAQKHSTLHFFM*IFHKIH
Trigger: GTGGATTTTGTGAAAGATGCACATGAAGAAATGGAG...TGTGCTATGCTTCTGTGCTGGACACAAATTTCTATAAACTTGTGCTCTGAGCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
CDS-3UTR CCA 90 bp AAGTTAATGTTCCAAAGAACCTGCCATCCTGAAGAGTTCTGCACATTAATCAATCAAAATCCACACTCTTaGTCAGCATCAAAAGGGCTG +
Preference number: 4 (lower is better)
Translates to: KLMFQRTCHPEEFCTLINQNPHS*SASKGL
Trigger: CAGCCCTTTTGATGCTGACCAAGAGTGTGGATTTTG...ATTGATTAATGTGCAGAACTCTTCAGGATGGCAGGTTCTTTGGAACATTAACTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099488.11
CDS-3UTR TCA 90 bp AAGTTAATGTTCCAAAGAACCTGCCATCCTGAAGAGTTCTGCACATTAATCAATTCACTGCTGCCTCATTaGGTCTTCTCCAAAACATTT +
Preference number: 4 (lower is better)
Translates to: KLMFQRTCHPEEFCTLINSLLPH*VFSKTF
Trigger: AAATGTTTTGGAGAAGACTCAATGAGGCAGCAGTGA...ATTGATTAATGTGCAGAACTCTTCAGGATGGCAGGTTCTTTGGAACATTAACTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099488.11
CDS-3UTR GCA 90 bp ATATTGAAACCAATACATCTTGTAAAATGTAAGTTGCTTGGCAGGATCACCTCCCATTCTTCTACAGCCTaGTCCATTTCTTCATGTGCA +
Preference number: 4 (lower is better)
Translates to: ILKPIHLVKCKLLGRITSHSSTA*SISSCA
Trigger: TGCACATGAAGAAATGGAGCAGGCTGTAGAAGAATG...GGAGGTGATCCTGCCAAGCAACTTACATTTTACAAGATGTATTGGTTTCAATAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099488.11
CDS-3UTR GCA 90 bp AAGTTAATGTTCCAAAGAACCTGCCATCCTGAAGAGTTCTGCACATTAATCAATCTCCATTTCTTCATGTaGATCTTTCACAAAATCCAC +
Preference number: 4 (lower is better)
Translates to: KLMFQRTCHPEEFCTLINLHFFM*IFHKIH
Trigger: GTGGATTTTGTGAAAGATGCACATGAAGAAATGGAG...ATTGATTAATGTGCAGAACTCTTCAGGATGGCAGGTTCTTTGGAACATTAACTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099488.11
CDS-3UTR GCA 90 bp CACAAGTTTATAGAAATTTGTGTCCAGCACAGAAGCATAGCACACTGTATGATTCTCCATTTCTTCATGTaGATCTTTCACAAAATCCAC +
Preference number: 4 (lower is better)
Translates to: HKFIEICVQHRSIAHCMILHFFM*IFHKIH
Trigger: GTGGATTTTGTGAAAGATGCACATGAAGAAATGGAG...AATCATACAGTGTGCTATGCTTCTGTGCTGGACACAAATTTCTATAAACTTGTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
CDS TCA 90 bp GGCGATCGCTGGGCTTGCTTGCTGCCAGACCAGCTCCAGGTTCAGTaGGTGAACTGTCTCAGGGTAATCAGGAAGAGTGACAGAGCCTCT +
Preference number: 5 (lower is better)
Translates to: GDRWACLLPDQLQVQ*VNCLRVIRKSDRAS
Trigger: AGAGGCTCTGTCACTCTTCCTGATTACCCTGAGACAGTTCACTCACTGAACCTGGAGCTGGTCTGGCAGCAAGCAAGCCCAGCGATCGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099488.11
ENSMUST00000171260.3
CDS TCA 90 bp CCTCATCCTTCTTTCCATTCTCAGCCACCAAGATCCGGATTTTCTTaGGTGAAGCTCGGGATGCTCTCACCAGCGCCAGGCACGGGATTA +
Preference number: 5 (lower is better)
Translates to: PHPSFHSQPPRSGFS*VKLGMLSPAPGTGL
Trigger: TAATCCCGTGCCTGGCGCTGGTGAGAGCATCCCGAGCTTCACTCAAGAAAATCCGGATCTTGGTGGCTGAGAATGGAAAGAAGGATGAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000060455.15
ENSMUST00000099488.11
ENSMUST00000099489.9
ENSMUST00000171260.3
CDS CCA 90 bp AGTCTTCTCCAAAACATTTCTCGATTAAATTCCTCCGCTGTCTCCTaGGCTTCGCCGACCCGTACTCGAGGCAGAAGTGACCGTAGCTCC +
Preference number: 5 (lower is better)
Translates to: SLLQNISRLNSSAVS*ASPTRTRGRSDRSS
Trigger: GGAGCTACGGTCACTTCTGCCTCGAGTACGGGTCGGCGAAGCCCAGGAGACAGCGGAGGAATTTAATCGAGAAATGTTTTGGAGAAGACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000060455.15
ENSMUST00000099488.11
ENSMUST00000171260.3
CDS CCA 90 bp GAGTCCCGATTGCTGGGAAGCCCTAACACACCATCCTCATCACTGTaGCTGTCGGAGTTGTCTTCAGAATCATTCAAGAGGCCGCTGTAC +
Preference number: 5 (lower is better)
Translates to: ESRLLGSPNTPSSSL*LSELSSESFKRPLY
Trigger: GTACAGCGGCCTCTTGAATGATTCTGAAGACAACTCCGACAGCCACAGTGATGAGGATGGTGTGTTAGGGCTTCCCAGCAATCGGGACTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000060455.15
ENSMUST00000099488.11
ENSMUST00000099489.9
ENSMUST00000171260.3
CDS CCA 90 bp CACCAATTTCGCAGAACTGATCCGCACAGTGAGGTGGCACACAGGTaGGTATATGCTCAGAACCAAGTCATCCACACTGGGGCTGATCTC +
Preference number: 5 (lower is better)
Translates to: HQFRRTDPHSEVAHR*VYAQNQVIHTGADL
Trigger: GAGATCAGCCCCAGTGTGGATGACTTGGTTCTGAGCATATACCCACCTGTGTGCCACCTCACTGTGCGGATCAGTTCTGCGAAATTGGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
CDS CCA 90 bp TGTCCACACATTCACACTGATCCGCACAGTGAGGTGGCACACAGGTaGGTATATGCTCAGAACCAAGTCATCCACACTGGGGCTGATCTC +
Preference number: 5 (lower is better)
Translates to: CPHIHTDPHSEVAHR*VYAQNQVIHTGADL
Trigger: GAGATCAGCCCCAGTGTGGATGACTTGGTTCTGAGCATATACCCACCTGTGTGCCACCTCACTGTGCGGATCAGTGTGAATGTGTGGACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099488.11
ENSMUST00000171260.3
CDS CCA 90 bp GAGCCTCTGAGTGTCCACACATTCACACTGATCCGCACAGTGAGGTaGCACACAGGTGGGTATATGCTCAGAACCAAGTCATCCACACTG +
Preference number: 5 (lower is better)
Translates to: EPLSVHTFTLIRTVR*HTGGYMLRTKSSTL
Trigger: CAGTGTGGATGACTTGGTTCTGAGCATATACCCACCTGTGTGCCACCTCACTGTGCGGATCAGTGTGAATGTGTGGACACTCAGAGGCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099488.11
ENSMUST00000171260.3
CDS TCA 90 bp ATCCTTCTTTCCATTCTCAGCCACCAAGATCCGGATTTTCTTGAGTaGAGCTCGGGATGCTCTCACCAGCGCCAGGCACGGGATTATGAG +
Preference number: 5 (lower is better)
Translates to: ILLSILSHQDPDFLE*SSGCSHQRQARDYE
Trigger: CTCATAATCCCGTGCCTGGCGCTGGTGAGAGCATCCCGAGCTTCACTCAAGAAAATCCGGATCTTGGTGGCTGAGAATGGAAAGAAGGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000060455.15
ENSMUST00000099488.11
ENSMUST00000099489.9
ENSMUST00000171260.3
CDS CCA 90 bp ACACTGGGGCTGATCTCATCAGAAATGTCCACAATGTCATCCAGCTaGGCCACCTCATCCTTCTTTCCATTCTCAGCCACCAAGATCCGG +
Preference number: 5 (lower is better)
Translates to: TLGLISSEMSTMSSS*ATSSFFPFSATKIR
Trigger: CCGGATCTTGGTGGCTGAGAATGGAAAGAAGGATGAGGTGGCCCAGCTGGATGACATTGTGGACATTTCTGATGAGATCAGCCCCAGTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000060455.15
ENSMUST00000099488.11
ENSMUST00000099489.9
ENSMUST00000171260.3
CDS-3UTR CAA 90 bp CCAATACATCTTGTAAAATGTAAGTTGCTTGGCAGGATCACCTCCCTGCCAGTTGATCGCTGGGCTTGCTaGCTGCCAGACCAGCTCCAG +
Preference number: 5 (lower is better)
Translates to: PIHLVKCKLLGRITSLPVDRWAC*LPDQLQ
Trigger: CTGGAGCTGGTCTGGCAGCAAGCAAGCCCAGCGATC...AACTGGCAGGGAGGTGATCCTGCCAAGCAACTTACATTTTACAAGATGTATTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099488.11
CDS-3UTR CAA 90 bp AGGACAGAGGCTGCCTTTCTATCGAGCAAACACCCTGTCAAAGCTCCACTTCTAGATGGCAATACGGACTaGCTCACAGATCCTCTGGGT +
Preference number: 5 (lower is better)
Translates to: RTEAAFLSSKHPVKAPLLDGNTD*LTDPLG
Trigger: ACCCAGAGGATCTGTGAGCAAGTCCGTATTGCCATC...TAGAAGTGGAGCTTTGACAGGGTGTTTGCTCGATAGAAAGGCAGCCTCTGTCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
CDS-3UTR CAA 90 bp TTCTTAAGGACAGAGGCTGCCTTTCTATCGAGCAAACACCCTGTCAAAGCTCCAGCGACTGAGACACTATaGCAGGAAATCAGGTCACCA +
Preference number: 5 (lower is better)
Translates to: FLRTEAAFLSSKHPVKAPATETL*QEIRSP
Trigger: TGGTGACCTGATTTCCTGCAATAGTGTCTCAGTCGC...TGGAGCTTTGACAGGGTGTTTGCTCGATAGAAAGGCAGCCTCTGTCCTTAAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
CDS-3UTR CAA 90 bp AGGACAGAGGCTGCCTTTCTATCGAGCAAACACCCTGTCAAAGCTCCACTTCTACGGCTTTGTTATCTTTaGGGATCTCAGGCACCTGTT +
Preference number: 5 (lower is better)
Translates to: RTEAAFLSSKHPVKAPLLRLCYL*GSQAPV
Trigger: AACAGGTGCCTGAGATCCCAAAAGATAACAAAGCCG...TAGAAGTGGAGCTTTGACAGGGTGTTTGCTCGATAGAAAGGCAGCCTCTGTCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
CDS TCA 90 bp GGCTTTGTTATCTTTTGGGATCTCAGGCACCTGTTGACATGCGACTaGGACACTATTGCAGGAAATCAGGTCACCATTCTCAGTGCTCTG +
Preference number: 5 (lower is better)
Translates to: GFVIFWDLRHLLTCD*DTIAGNQVTILSAL
Trigger: CAGAGCACTGAGAATGGTGACCTGATTTCCTGCAATAGTGTCTCAGTCGCATGTCAACAGGTGCCTGAGATCCCAAAAGATAACAAAGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000060455.15
ENSMUST00000099488.11
ENSMUST00000099489.9
ENSMUST00000171260.3
CDS TCA 90 bp AAAAGGGCTGCGGCTTTGTTATCTTTTGGGATCTCAGGCACCTGTTaGCATGCGACTGAGACACTATTGCAGGAAATCAGGTCACCATTC +
Preference number: 5 (lower is better)
Translates to: KRAAALLSFGISGTC*HATETLLQEIRSPF
Trigger: GAATGGTGACCTGATTTCCTGCAATAGTGTCTCAGTCGCATGTCAACAGGTGCCTGAGATCCCAAAAGATAACAAAGCCGCAGCCCTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000060455.15
ENSMUST00000099488.11
ENSMUST00000099489.9
ENSMUST00000171260.3
CDS CCA 90 bp ATTAAAACAGACACCAATTTCGCAGAACTGATCCGCACAGTGAGGTaGCACACAGGTGGGTATATGCTCAGAACCAAGTCATCCACACTG +
Preference number: 5 (lower is better)
Translates to: IKTDTNFAELIRTVR*HTGGYMLRTKSSTL
Trigger: CAGTGTGGATGACTTGGTTCTGAGCATATACCCACCTGTGTGCCACCTCACTGTGCGGATCAGTTCTGCGAAATTGGTGTCTGTTTTAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
CDS GCA 90 bp GCTGTACGGGTCACATTCTTCTACAGCCTGCTCCATTTCTTCATGTaGATCTTTCACAAAATCCACACTCTTGGTCAGCATCAAAAGGGC +
Preference number: 5 (lower is better)
Translates to: AVRVTFFYSLLHFFM*IFHKIHTLGQHQKG
Trigger: GCCCTTTTGATGCTGACCAAGAGTGTGGATTTTGTGAAAGATGCACATGAAGAAATGGAGCAGGCTGTAGAAGAATGTGACCCGTACAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000060455.15
ENSMUST00000099488.11
ENSMUST00000099489.9
ENSMUST00000171260.3
CDS-3UTR CAA 90 bp CCAATACATCTTGTAAAATGTAAGTTGCTTGGCAGGATCACCTCCCTGCCAGTTGCGACTGAGACACTATaGCAGGAAATCAGGTCACCA +
Preference number: 5 (lower is better)
Translates to: PIHLVKCKLLGRITSLPVATETL*QEIRSP
Trigger: TGGTGACCTGATTTCCTGCAATAGTGTCTCAGTCGC...AACTGGCAGGGAGGTGATCCTGCCAAGCAACTTACATTTTACAAGATGTATTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099488.11
CDS-3UTR CAA 90 bp TTCTTAAGGACAGAGGCTGCCTTTCTATCGAGCAAACACCCTGTCAAAGCTCCAACAAAATCCACACTCTaGGTCAGCATCAAAAGGGCT +
Preference number: 5 (lower is better)
Translates to: FLRTEAAFLSSKHPVKAPTKSTL*VSIKRA
Trigger: AGCCCTTTTGATGCTGACCAAGAGTGTGGATTTTGT...TGGAGCTTTGACAGGGTGTTTGCTCGATAGAAAGGCAGCCTCTGTCCTTAAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
CDS-3UTR CAA 90 bp CTCAGAGCACAAGTTTATAGAAATTTGTGTCCAGCACAGAAGCATAGCACACTGCAGTATGAGTCCCGATaGCTGGGAAGCCCTAACACA +
Preference number: 5 (lower is better)
Translates to: LRAQVYRNLCPAQKHSTLQYESR*LGSPNT
Trigger: TGTGTTAGGGCTTCCCAGCAATCGGGACTCATACTG...CAGTGTGCTATGCTTCTGTGCTGGACACAAATTTCTATAAACTTGTGCTCTGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
CDS GCA 90 bp GAAGTGCGTTGTCAGAACAGTGGCTTCCCCGTTCACTTTCACTGCTaGCTCATTGAGTCTTCTCCAAAACATTTCTCGATTAAATTCCTC +
Preference number: 5 (lower is better)
Translates to: EVRCQNSGFPVHFHC*LIESSPKHFSIKFL
Trigger: GAGGAATTTAATCGAGAAATGTTTTGGAGAAGACTCAATGAGGCAGCAGTGAAAGTGAACGGGGAAGCCACTGTTCTGACAACGCACTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000060455.15
ENSMUST00000099488.11
ENSMUST00000171260.3
CDS CCA 90 bp ATAATTATTTCCTCGATGGCAATACGGACTTGCTCACAGATCCTCTaGGTTTCCTGTGGAGATGGCCATGGAAGTTTAGAGAAGTGCGTT +
Preference number: 5 (lower is better)
Translates to: IIISSMAIRTCSQIL*VSCGDGHGSLEKCV
Trigger: AACGCACTTCTCTAAACTTCCATGGCCATCTCCACAGGAAACCCAGAGGATCTGTGAGCAAGTCCGTATTGCCATCGAGGAAATAATTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000060455.15
ENSMUST00000099488.11
ENSMUST00000099489.9
ENSMUST00000171260.3
CDS-3UTR CAA 90 bp CCAATACATCTTGTAAAATGTAAGTTGCTTGGCAGGATCACCTCCCTGCCAGTTCTGTGGCTGTCGGAGTaGTCTTCAGAATCATTCAAG +
Preference number: 5 (lower is better)
Translates to: PIHLVKCKLLGRITSLPVLWLSE*SSESFK
Trigger: CTTGAATGATTCTGAAGACAACTCCGACAGCCACAG...AACTGGCAGGGAGGTGATCCTGCCAAGCAACTTACATTTTACAAGATGTATTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099488.11
CDS GCA 90 bp AGAGAAGTGCGTTGTCAGAACAGTGGCTTCCCCGTTCACTTTCACTaGTGCCTCATTGAGTCTTCTCCAAAACATTTCTCGATTAAATTC +
Preference number: 5 (lower is better)
Translates to: REVRCQNSGFPVHFH*CLIESSPKHFSIKF
Trigger: GAATTTAATCGAGAAATGTTTTGGAGAAGACTCAATGAGGCAGCAGTGAAAGTGAACGGGGAAGCCACTGTTCTGACAACGCACTTCTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000060455.15
ENSMUST00000099488.11
ENSMUST00000171260.3
CDS-3UTR CAA 90 bp AGCTCAGAGCACAAGTTTATAGAAATTTGTGTCCAGCACAGAAGCATAGCACACCTGTGGCTGTCGGAGTaGTCTTCAGAATCATTCAAG +
Preference number: 5 (lower is better)
Translates to: SSEHKFIEICVQHRSIAHLWLSE*SSESFK
Trigger: CTTGAATGATTCTGAAGACAACTCCGACAGCCACAG...GTGTGCTATGCTTCTGTGCTGGACACAAATTTCTATAAACTTGTGCTCTGAGCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
CDS-3UTR CAA 90 bp TTTATAGAAATTTGTGTCCAGCACAGAAGCATAGCACACTGTATGATTGGTGGACAGTATGAGTCCCGATaGCTGGGAAGCCCTAACACA +
Preference number: 5 (lower is better)
Translates to: FIEICVQHRSIAHCMIGGQYESR*LGSPNT
Trigger: TGTGTTAGGGCTTCCCAGCAATCGGGACTCATACTG...TCCACCAATCATACAGTGTGCTATGCTTCTGTGCTGGACACAAATTTCTATAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
CDS-3UTR CAA 90 bp ATATTGAAACCAATACATCTTGTAAAATGTAAGTTGCTTGGCAGGATCACCTCCGATGGCAATACGGACTaGCTCACAGATCCTCTGGGT +
Preference number: 5 (lower is better)
Translates to: ILKPIHLVKCKLLGRITSDGNTD*LTDPLG
Trigger: ACCCAGAGGATCTGTGAGCAAGTCCGTATTGCCATC...GGAGGTGATCCTGCCAAGCAACTTACATTTTACAAGATGTATTGGTTTCAATAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099488.11
CDS-3UTR CAA 90 bp CACAAGTTTATAGAAATTTGTGTCCAGCACAGAAGCATAGCACACTGTATGATTGATGGCAATACGGACTaGCTCACAGATCCTCTGGGT +
Preference number: 5 (lower is better)
Translates to: HKFIEICVQHRSIAHCMIDGNTD*LTDPLG
Trigger: ACCCAGAGGATCTGTGAGCAAGTCCGTATTGCCATC...AATCATACAGTGTGCTATGCTTCTGTGCTGGACACAAATTTCTATAAACTTGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
CDS-3UTR CAA 90 bp TTTATAGAAATTTGTGTCCAGCACAGAAGCATAGCACACTGTATGATTGGTGGAGCGACTGAGACACTATaGCAGGAAATCAGGTCACCA +
Preference number: 5 (lower is better)
Translates to: FIEICVQHRSIAHCMIGGATETL*QEIRSP
Trigger: TGGTGACCTGATTTCCTGCAATAGTGTCTCAGTCGC...TCCACCAATCATACAGTGTGCTATGCTTCTGTGCTGGACACAAATTTCTATAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
CDS-3UTR CAA 90 bp AGCTCAGAGCACAAGTTTATAGAAATTTGTGTCCAGCACAGAAGCATAGCACACACAAAATCCACACTCTaGGTCAGCATCAAAAGGGCT +
Preference number: 5 (lower is better)
Translates to: SSEHKFIEICVQHRSIAHTKSTL*VSIKRA
Trigger: AGCCCTTTTGATGCTGACCAAGAGTGTGGATTTTGT...GTGTGCTATGCTTCTGTGCTGGACACAAATTTCTATAAACTTGTGCTCTGAGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
CDS-3UTR CAA 90 bp ATATTGAAACCAATACATCTTGTAAAATGTAAGTTGCTTGGCAGGATCACCTCCCAGTATGAGTCCCGATaGCTGGGAAGCCCTAACACA +
Preference number: 5 (lower is better)
Translates to: ILKPIHLVKCKLLGRITSQYESR*LGSPNT
Trigger: TGTGTTAGGGCTTCCCAGCAATCGGGACTCATACTG...GGAGGTGATCCTGCCAAGCAACTTACATTTTACAAGATGTATTGGTTTCAATAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099488.11
CDS TCA 90 bp ATTCCGTACCAGCTTTCTCAGGGTGATTCCCTGGTCCTTAGGAAGTaGATAATACACTATAATTATTTCCTCGATGGCAATACGGACTTG +
Preference number: 5 (lower is better)
Translates to: IPYQLSQGDSLVLRK*IIHYNYFLDGNTDL
Trigger: CAAGTCCGTATTGCCATCGAGGAAATAATTATAGTGTATTATTCACTTCCTAAGGACCAGGGAATCACCCTGAGAAAGCTGGTACGGAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000060455.15
ENSMUST00000099488.11
ENSMUST00000099489.9
ENSMUST00000171260.3
CDS-3UTR CAA 90 bp CTCAGAGCACAAGTTTATAGAAATTTGTGTCCAGCACAGAAGCATAGCACACTGTTCACTGCTGCCTCATaGAGTCTTCTCCAAAACATT +
Preference number: 5 (lower is better)
Translates to: LRAQVYRNLCPAQKHSTLFTAAS*SLLQNI
Trigger: AATGTTTTGGAGAAGACTCAATGAGGCAGCAGTGAA...CAGTGTGCTATGCTTCTGTGCTGGACACAAATTTCTATAAACTTGTGCTCTGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060455.15
CDS-3UTR CAA 90 bp TTTATAGAAATTTGTGTCCAGCACAGAAGCATAGCACACTGTATGATTGGTGGACGGCTTTGTTATCTTTaGGGATCTCAGGCACCTGTT +
Preference number: 5 (lower is better)
Translates to: FIEICVQHRSIAHCMIGGRLCYL*GSQAPV
Trigger: AACAGGTGCCTGAGATCCCAAAAGATAACAAAGCCG...TCCACCAATCATACAGTGTGCTATGCTTCTGTGCTGGACACAAATTTCTATAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
CDS-3UTR CAA 90 bp CAAGTTTATAGAAATTTGTGTCCAGCACAGAAGCATAGCACACTGTATGATTGGCTGTGGCTGTCGGAGTaGTCTTCAGAATCATTCAAG +
Preference number: 5 (lower is better)
Translates to: QVYRNLCPAQKHSTLYDWLWLSE*SSESFK
Trigger: CTTGAATGATTCTGAAGACAACTCCGACAGCCACAG...CCAATCATACAGTGTGCTATGCTTCTGTGCTGGACACAAATTTCTATAAACTTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
CDS-3UTR CAA 90 bp ATATTGAAACCAATACATCTTGTAAAATGTAAGTTGCTTGGCAGGATCACCTCCCGGCTTTGTTATCTTTaGGGATCTCAGGCACCTGTT +
Preference number: 5 (lower is better)
Translates to: ILKPIHLVKCKLLGRITSRLCYL*GSQAPV
Trigger: AACAGGTGCCTGAGATCCCAAAAGATAACAAAGCCG...GGAGGTGATCCTGCCAAGCAACTTACATTTTACAAGATGTATTGGTTTCAATAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099488.11
CDS-3UTR CAA 90 bp ATATTGAAACCAATACATCTTGTAAAATGTAAGTTGCTTGGCAGGATCACCTCCACAAAATCCACACTCTaGGTCAGCATCAAAAGGGCT +
Preference number: 5 (lower is better)
Translates to: ILKPIHLVKCKLLGRITSTKSTL*VSIKRA
Trigger: AGCCCTTTTGATGCTGACCAAGAGTGTGGATTTTGT...GGAGGTGATCCTGCCAAGCAACTTACATTTTACAAGATGTATTGGTTTCAATAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000099488.11
CDS-3UTR CAA 90 bp ATATTGAAACCAATACATCTTGTAAAATGTAAGTTGCTTGGCAGGATCACCTCCTTCACTGCTGCCTCATaGAGTCTTCTCCAAAACATT +
Preference number: 5 (lower is better)
Translates to: ILKPIHLVKCKLLGRITSFTAAS*SLLQNI
Trigger: AATGTTTTGGAGAAGACTCAATGAGGCAGCAGTGAA...GGAGGTGATCCTGCCAAGCAACTTACATTTTACAAGATGTATTGGTTTCAATAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099488.11
CDS CCA 72 bp ACTCCAGCGCTGTGGGCACAGAGGCAAGGCGATCGCTaGGCTTGCTTGCTGCCAGACCAGCTCCAGGTTCAG +
Preference number: 6 (lower is better)
Translates to: TPALWAQRQGDR*ACLLPDQLQVQ
Trigger: CTGAACCTGGAGCTGGTCTGGCAGCAAGCAAGCCCAGCGATCGCCTTGCCTCTGTGCCCACAGCGCTGGAGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099488.11
ENSMUST00000171260.3
CDS TCA 72 bp TCCATTCTCAGCCACCAAGATCCGGATTTTCTTGAGTaGAGCTCGGGATGCTCTCACCAGCGCCAGGCACGG +
Preference number: 6 (lower is better)
Translates to: SILSHQDPDFLE*SSGCSHQRQAR
Trigger: CCGTGCCTGGCGCTGGTGAGAGCATCCCGAGCTTCACTCAAGAAAATCCGGATCTTGGTGGCTGAGAATGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000060455.15
ENSMUST00000099488.11
ENSMUST00000099489.9
ENSMUST00000171260.3
CDS TCA 72 bp CTCGGGATGCTCTCACCAGCGCCAGGCACGGGATTATaGGTTCTTGATCTTCCTCTGACCAGTATGAGTCCC +
Preference number: 6 (lower is better)
Translates to: LGMLSPAPGTGL*VLDLPLTSMSP
Trigger: GGGACTCATACTGGTCAGAGGAAGATCAAGAACTCATAATCCCGTGCCTGGCGCTGGTGAGAGCATCCCGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000060455.15
ENSMUST00000099488.11
ENSMUST00000099489.9
ENSMUST00000171260.3
CDS CCA 72 bp CGCAGAACTGATCCGCACAGTGAGGTGGCACACAGGTaGGTATATGCTCAGAACCAAGTCATCCACACTGGG +
Preference number: 6 (lower is better)
Translates to: RRTDPHSEVAHR*VYAQNQVIHTG
Trigger: CCCAGTGTGGATGACTTGGTTCTGAGCATATACCCACCTGTGTGCCACCTCACTGTGCGGATCAGTTCTGCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060455.15
ENSMUST00000099489.9
CDS TCA 72 bp GCTCTCACCAGCGCCAGGCACGGGATTATGAGTTCTTaGTCTTCCTCTGACCAGTATGAGTCCCGATTGCTG +
Preference number: 6 (lower is better)
Translates to: ALTSARHGIMSS*SSSDQYESRLL
Trigger: CAGCAATCGGGACTCATACTGGTCAGAGGAAGATCAAGAACTCATAATCCCGTGCCTGGCGCTGGTGAGAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000060455.15
ENSMUST00000099488.11
ENSMUST00000099489.9
ENSMUST00000171260.3
CDS TCA 72 bp TGGGCTTGCTTGCTGCCAGACCAGCTCCAGGTTCAGTaGGTGAACTGTCTCAGGGTAATCAGGAAGAGTGAC +
Preference number: 6 (lower is better)
Translates to: WACLLPDQLQVQ*VNCLRVIRKSD
Trigger: GTCACTCTTCCTGATTACCCTGAGACAGTTCACTCACTGAACCTGGAGCTGGTCTGGCAGCAAGCAAGCCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099488.11
ENSMUST00000171260.3
CDS CAA 90 bp ACCTCATCCTTCTTTCCATTCTCAGCCACCAAGATCCGGATTTTCTaGAGTGAAGCTCGGGATGCTCTCACCAGCGCCAGGCACGGGATT +
Preference number: 6 (lower is better)
Translates to: TSSFFPFSATKIRIF*SEARDALTSARHGI
Trigger: AATCCCGTGCCTGGCGCTGGTGAGAGCATCCCGAGCTTCACTCAAGAAAATCCGGATCTTGGTGGCTGAGAATGGAAAGAAGGATGAGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000060455.15
ENSMUST00000099488.11
ENSMUST00000099489.9
ENSMUST00000171260.3
CDS CCA 72 bp CAAAACATTTCTCGATTAAATTCCTCCGCTGTCTCCTaGGCTTCGCCGACCCGTACTCGAGGCAGAAGTGAC +
Preference number: 6 (lower is better)
Translates to: QNISRLNSSAVS*ASPTRTRGRSD
Trigger: GTCACTTCTGCCTCGAGTACGGGTCGGCGAAGCCCAGGAGACAGCGGAGGAATTTAATCGAGAAATGTTTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000060455.15
ENSMUST00000099488.11
ENSMUST00000171260.3
CDS CAA 72 bp CCTAACACACCATCCTCATCACTGTGGCTGTCGGAGTaGTCTTCAGAATCATTCAAGAGGCCGCTGTACGGG +
Preference number: 6 (lower is better)
Translates to: PNTPSSSLWLSE*SSESFKRPLYG
Trigger: CCCGTACAGCGGCCTCTTGAATGATTCTGAAGACAACTCCGACAGCCACAGTGATGAGGATGGTGTGTTAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000060455.15
ENSMUST00000099488.11
ENSMUST00000099489.9
ENSMUST00000171260.3
CDS CAA 72 bp TTCTTTCCATTCTCAGCCACCAAGATCCGGATTTTCTaGAGTGAAGCTCGGGATGCTCTCACCAGCGCCAGG +
Preference number: 6 (lower is better)
Translates to: FFPFSATKIRIF*SEARDALTSAR
Trigger: CCTGGCGCTGGTGAGAGCATCCCGAGCTTCACTCAAGAAAATCCGGATCTTGGTGGCTGAGAATGGAAAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000060455.15
ENSMUST00000099488.11
ENSMUST00000099489.9
ENSMUST00000171260.3
CDS CAA 90 bp CTGGGAAGCCCTAACACACCATCCTCATCACTGTGGCTGTCGGAGTaGTCTTCAGAATCATTCAAGAGGCCGCTGTACGGGTCACATTCT +
Preference number: 6 (lower is better)
Translates to: LGSPNTPSSSLWLSE*SSESFKRPLYGSHS
Trigger: AGAATGTGACCCGTACAGCGGCCTCTTGAATGATTCTGAAGACAACTCCGACAGCCACAGTGATGAGGATGGTGTGTTAGGGCTTCCCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000060455.15
ENSMUST00000099488.11
ENSMUST00000099489.9
ENSMUST00000171260.3
CDS CCA 72 bp CTCACAGATCCTCTGGGTTTCCTGTGGAGATGGCCATaGAAGTTTAGAGAAGTGCGTTGTCAGAACAGTGGC +
Preference number: 6 (lower is better)
Translates to: LTDPLGFLWRWP*KFREVRCQNSG
Trigger: GCCACTGTTCTGACAACGCACTTCTCTAAACTTCCATGGCCATCTCCACAGGAAACCCAGAGGATCTGTGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000060455.15
ENSMUST00000099488.11
ENSMUST00000099489.9
ENSMUST00000171260.3
CDS CAA 90 bp CCACACTCTTGGTCAGCATCAAAAGGGCTGCGGCTTTGTTATCTTTaGGGATCTCAGGCACCTGTTGACATGCGACTGAGACACTATTGC +
Preference number: 6 (lower is better)
Translates to: PHSWSASKGLRLCYL*GSQAPVDMRLRHYC
Trigger: GCAATAGTGTCTCAGTCGCATGTCAACAGGTGCCTGAGATCCCAAAAGATAACAAAGCCGCAGCCCTTTTGATGCTGACCAAGAGTGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000060455.15
ENSMUST00000099488.11
ENSMUST00000099489.9
ENSMUST00000171260.3
CDS GCA 72 bp TCTCAGGCACCTGTTGACATGCGACTGAGACACTATTaGAGGAAATCAGGTCACCATTCTCAGTGCTCTGAG +
Preference number: 6 (lower is better)
Translates to: SQAPVDMRLRHY*RKSGHHSQCSE
Trigger: CTCAGAGCACTGAGAATGGTGACCTGATTTCCTGCAATAGTGTCTCAGTCGCATGTCAACAGGTGCCTGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000060455.15
ENSMUST00000099488.11
ENSMUST00000099489.9
ENSMUST00000171260.3
CDS GCA 72 bp GTTCTTGATCTTCCTCTGACCAGTATGAGTCCCGATTaGTGGGAAGCCCTAACACACCATCCTCATCACTGT +
Preference number: 6 (lower is better)
Translates to: VLDLPLTSMSPD*WEALTHHPHHC
Trigger: ACAGTGATGAGGATGGTGTGTTAGGGCTTCCCAGCAATCGGGACTCATACTGGTCAGAGGAAGATCAAGAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000060455.15
ENSMUST00000099488.11
ENSMUST00000099489.9
ENSMUST00000171260.3
CDS CCA 72 bp TTGCTGGGAAGCCCTAACACACCATCCTCATCACTGTaGCTGTCGGAGTTGTCTTCAGAATCATTCAAGAGG +
Preference number: 6 (lower is better)
Translates to: LLGSPNTPSSSL*LSELSSESFKR
Trigger: CCTCTTGAATGATTCTGAAGACAACTCCGACAGCCACAGTGATGAGGATGGTGTGTTAGGGCTTCCCAGCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000060455.15
ENSMUST00000099488.11
ENSMUST00000099489.9
ENSMUST00000171260.3
CDS CCA 72 bp CTGATCTCATCAGAAATGTCCACAATGTCATCCAGCTaGGCCACCTCATCCTTCTTTCCATTCTCAGCCACC +
Preference number: 6 (lower is better)
Translates to: LISSEMSTMSSS*ATSSFFPFSAT
Trigger: GGTGGCTGAGAATGGAAAGAAGGATGAGGTGGCCCAGCTGGATGACATTGTGGACATTTCTGATGAGATCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000060455.15
ENSMUST00000099488.11
ENSMUST00000099489.9
ENSMUST00000171260.3
CDS CAA 72 bp TGGTCAGCATCAAAAGGGCTGCGGCTTTGTTATCTTTaGGGATCTCAGGCACCTGTTGACATGCGACTGAGA +
Preference number: 6 (lower is better)
Translates to: WSASKGLRLCYL*GSQAPVDMRLR
Trigger: TCTCAGTCGCATGTCAACAGGTGCCTGAGATCCCAAAAGATAACAAAGCCGCAGCCCTTTTGATGCTGACCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000060455.15
ENSMUST00000099488.11
ENSMUST00000099489.9
ENSMUST00000171260.3
CDS TCA 72 bp GCGGCTTTGTTATCTTTTGGGATCTCAGGCACCTGTTaGCATGCGACTGAGACACTATTGCAGGAAATCAGG +
Preference number: 6 (lower is better)
Translates to: AALLSFGISGTC*HATETLLQEIR
Trigger: CCTGATTTCCTGCAATAGTGTCTCAGTCGCATGTCAACAGGTGCCTGAGATCCCAAAAGATAACAAAGCCGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000060455.15
ENSMUST00000099488.11
ENSMUST00000099489.9
ENSMUST00000171260.3
CDS GCA 72 bp CGTTGTCAGAACAGTGGCTTCCCCGTTCACTTTCACTaGTGCCTCATTGAGTCTTCTCCAAAACATTTCTCG +
Preference number: 6 (lower is better)
Translates to: RCQNSGFPVHFH*CLIESSPKHFS
Trigger: CGAGAAATGTTTTGGAGAAGACTCAATGAGGCAGCAGTGAAAGTGAACGGGGAAGCCACTGTTCTGACAACG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000060455.15
ENSMUST00000099488.11
ENSMUST00000171260.3
CDS CAA 90 bp GTTGTCAGAACAGTGGCTTCCCCGTTCACTTTCACTGCTGCCTCATaGAGTCTTCTCCAAAACATTTCTCGATTAAATTCCTCCGCTGTC +
Preference number: 6 (lower is better)
Translates to: VVRTVASPFTFTAAS*SLLQNISRLNSSAV
Trigger: GACAGCGGAGGAATTTAATCGAGAAATGTTTTGGAGAAGACTCAATGAGGCAGCAGTGAAAGTGAACGGGGAAGCCACTGTTCTGACAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000060455.15
ENSMUST00000099488.11
ENSMUST00000171260.3
CDS GCA 72 bp TGTCAGAACAGTGGCTTCCCCGTTCACTTTCACTGCTaGCTCATTGAGTCTTCTCCAAAACATTTCTCGATT +
Preference number: 6 (lower is better)
Translates to: CQNSGFPVHFHC*LIESSPKHFSI
Trigger: AATCGAGAAATGTTTTGGAGAAGACTCAATGAGGCAGCAGTGAAAGTGAACGGGGAAGCCACTGTTCTGACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000060455.15
ENSMUST00000099488.11
ENSMUST00000171260.3
CDS GCA 72 bp TACACTATAATTATTTCCTCGATGGCAATACGGACTTaGTCACAGATCCTCTGGGTTTCCTGTGGAGATGGC +
Preference number: 6 (lower is better)
Translates to: YTIIISSMAIRT*SQILWVSCGDG
Trigger: GCCATCTCCACAGGAAACCCAGAGGATCTGTGAGCAAGTCCGTATTGCCATCGAGGAAATAATTATAGTGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000060455.15
ENSMUST00000099488.11
ENSMUST00000099489.9
ENSMUST00000171260.3
CDS CAA 72 bp ATACACTATAATTATTTCCTCGATGGCAATACGGACTaGCTCACAGATCCTCTGGGTTTCCTGTGGAGATGG +
Preference number: 6 (lower is better)
Translates to: IHYNYFLDGNTD*LTDPLGFLWRW
Trigger: CCATCTCCACAGGAAACCCAGAGGATCTGTGAGCAAGTCCGTATTGCCATCGAGGAAATAATTATAGTGTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000060455.15
ENSMUST00000099488.11
ENSMUST00000099489.9
ENSMUST00000171260.3
CDS CAA 72 bp ATTTCTTCATGTGCATCTTTCACAAAATCCACACTCTaGGTCAGCATCAAAAGGGCTGCGGCTTTGTTATCT +
Preference number: 6 (lower is better)
Translates to: ISSCASFTKSTL*VSIKRAAALLS
Trigger: AGATAACAAAGCCGCAGCCCTTTTGATGCTGACCAAGAGTGTGGATTTTGTGAAAGATGCACATGAAGAAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000060455.15
ENSMUST00000099488.11
ENSMUST00000099489.9
ENSMUST00000171260.3