RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CCND3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000034165

Ensembl transcript IDs: ENSMUST00000037333.17, ENSMUST00000171031.8, ENSMUST00000182129.8, ENSMUST00000182209.8, ENSMUST00000182506.8, ENSMUST00000182539.8, ENSMUST00000182846.3, ENSMUST00000182848.8, ENSMUST00000182874.3, ENSMUST00000183044.8, ENSMUST00000183158.2, ENSMUST00000183177.8, ENSMUST00000183210.2

Found 184 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GGATGCCCGAAGGAGCCTGCAAGGGCCAACACCTTTGGAAGGTACTaGGGCGTTTTGGCAACTGAGAAGGTTGGAGCCCCGGACAGAAGA +
Preference number: 1 (lower is better)
Translates to: GCPKEPARANTFGRY*GVLATEKVGAPDRR
Trigger: TCTTCTGTCCGGGGCTCCAACCTTCTCAGTTGCCAAAACGCCCCAGTACCTTCCAAAGGTGTTGGCCCTTGCAGGCTCCTTCGGGCATCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR GCA 90 bp ACACAGAGGCCATCTAGGGCAGCTCCTCATAAGCTTCTATCGGGATaGCCGAAGGAGCCTGCAAGGGCCAACACCTTTGGAAGGTACTGG +
Preference number: 1 (lower is better)
Translates to: TQRPSRAAPHKLLSG*PKEPARANTFGRYW
Trigger: CCAGTACCTTCCAAAGGTGTTGGCCCTTGCAGGCTCCTTCGGGCATCCCGATAGAAGCTTATGAGGAGCTGCCCTAGATGGCCTCTGTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR CCA 90 bp ACCTGTTTGTATTTCTCTGACCATCATGGCCCAGGACAGCCAAGCTaGTTGAGTGGGAAGGAAGAGGAGCTGACTGGCCATGAAGACGCC +
Preference number: 1 (lower is better)
Translates to: TCLYFSDHHGPGQPS*LSGKEEELTGHEDA
Trigger: GGCGTCTTCATGGCCAGTCAGCTCCTCTTCCTTCCCACTCAACCAGCTTGGCTGTCCTGGGCCATGATGGTCAGAGAAATACAAACAGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000182539.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR CCA 90 bp GGAAGAAGGGAGGGAAAGAGCAACCGCCAGGGTTACCACCACTTGTaGGGTACAGGCCTCACTGTACCCTCTTACAGTTGTATTCAAAGC +
Preference number: 1 (lower is better)
Translates to: GRREGKSNRQGYHHL*GTGLTVPSYSCIQS
Trigger: GCTTTGAATACAACTGTAAGAGGGTACAGTGAGGCCTGTACCCCACAAGTGGTGGTAACCCTGGCGGTTGCTCTTTCCCTCCCTTCTTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR TCA 90 bp TCAAAAGAAATGCTGGTGTGTGGATTTTACCTGTTTGTATTTCTCTaGCCATCATGGCCCAGGACAGCCAAGCTGGTTGAGTGGGAAGGA +
Preference number: 1 (lower is better)
Translates to: SKEMLVCGFYLFVFL*PSWPRTAKLVEWEG
Trigger: TCCTTCCCACTCAACCAGCTTGGCTGTCCTGGGCCATGATGGTCAGAGAAATACAAACAGGTAAAATCCACACACCAGCATTTCTTTTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000182539.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR-3UTR CCA 90 bp GGATGCCCGAAGGAGCCTGCAAGGGCCAACACCTTTGGAAGGTACTGGGGCGTTGGCCCCTCCTCTGCTTaGTGGCCTGAGAGGGCCTGT +
Preference number: 2 (lower is better)
Translates to: GCPKEPARANTFGRYWGVGPSSA*WPERAC
Trigger: ACAGGCCCTCTCAGGCCACCAAGCAGAGGAGGGGCC...AACGCCCCAGTACCTTCCAAAGGTGTTGGCCCTTGCAGGCTCCTTCGGGCATCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR-3UTR CCA 90 bp GCCACCAGCCCAAACCTTGTGGCCCGAGGAAAGACCTGTGACCCTAGGGCTTGCGGGATAGGCAGGACCTaGCCCCTTGGGCTTTGTGAG +
Preference number: 2 (lower is better)
Translates to: ATSPNLVARGKTCDPRACGIGRT*PLGLCE
Trigger: CTCACAAAGCCCAAGGGGCCAGGTCCTGCCTATCCC...GCAAGCCCTAGGGTCACAGGTCTTTCCTCGGGCCACAAGGTTTGGGCTGGTGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR-3UTR TCA 90 bp TGGGCCACCAGCCCAAACCTTGTGGCCCGAGGAAAGACCTGTGACCCTAGGGCTGACAGCCAAGCTGGTTaGGTGGGAAGGAAGAGGAGC +
Preference number: 2 (lower is better)
Translates to: WATSPNLVARGKTCDPRADSQAG*VGRKRS
Trigger: GCTCCTCTTCCTTCCCACTCAACCAGCTTGGCTGTC...AGCCCTAGGGTCACAGGTCTTTCCTCGGGCCACAAGGTTTGGGCTGGTGGCCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR-3UTR GCA 90 bp TGGGCCACCAGCCCAAACCTTGTGGCCCGAGGAAAGACCTGTGACCCTAGGGCTATGCCCGAAGGAGCCTaGAAGGGCCAACACCTTTGG +
Preference number: 2 (lower is better)
Translates to: WATSPNLVARGKTCDPRAMPEGA*KGQHLW
Trigger: CCAAAGGTGTTGGCCCTTGCAGGCTCCTTCGGGCAT...AGCCCTAGGGTCACAGGTCTTTCCTCGGGCCACAAGGTTTGGGCTGGTGGCCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR-3UTR CCA 90 bp GGGGAAGAAGGGAGGGAAAGAGCAACCGCCAGGGTTACCACCACTTGTGGGGTACCCTCCTCTGCTTGGTaGCCTGAGAGGGCCTGTCTC +
Preference number: 2 (lower is better)
Translates to: GEEGRERATARVTTTCGVPSSAW*PERACL
Trigger: GAGACAGGCCCTCTCAGGCCACCAAGCAGAGGAGGG...TACCCCACAAGTGGTGGTAACCCTGGCGGTTGCTCTTTCCCTCCCTTCTTCCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR-3UTR CCA 90 bp AGTGGGAAGGAAGAGGAGCTGACTGGCCATGAAGACGCCCCTCATGACCATGCAGGCCCCTCCTCTGCTTaGTGGCCTGAGAGGGCCTGT +
Preference number: 2 (lower is better)
Translates to: SGKEEELTGHEDAPHDHAGPSSA*WPERAC
Trigger: ACAGGCCCTCTCAGGCCACCAAGCAGAGGAGGGGCC...TGCATGGTCATGAGGGGCGTCTTCATGGCCAGTCAGCTCCTCTTCCTTCCCACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000182539.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR-3UTR CCA 90 bp TCTGACCATCATGGCCCAGGACAGCCAAGCTGGTTGAGTGGGAAGGAAGAGGAGGGCCCCTCCTCTGCTTaGTGGCCTGAGAGGGCCTGT +
Preference number: 2 (lower is better)
Translates to: SDHHGPGQPSWLSGKEEEGPSSA*WPERAC
Trigger: ACAGGCCCTCTCAGGCCACCAAGCAGAGGAGGGGCC...CTCCTCTTCCTTCCCACTCAACCAGCTTGGCTGTCCTGGGCCATGATGGTCAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000182539.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR-3UTR CCA 90 bp GGACAGCCAAGCTGGTTGAGTGGGAAGGAAGAGGAGCTGACTGGCCATGAAGACGGCCCCTCCTCTGCTTaGTGGCCTGAGAGGGCCTGT +
Preference number: 2 (lower is better)
Translates to: GQPSWLSGKEEELTGHEDGPSSA*WPERAC
Trigger: ACAGGCCCTCTCAGGCCACCAAGCAGAGGAGGGGCC...GTCTTCATGGCCAGTCAGCTCCTCTTCCTTCCCACTCAACCAGCTTGGCTGTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000182539.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR-3UTR CCA 90 bp GCCCGAAGGAGCCTGCAAGGGCCAACACCTTTGGAAGGTACTGGGGCGTTTTGGGGGATAGGCAGGACCTaGCCCCTTGGGCTTTGTGAG +
Preference number: 2 (lower is better)
Translates to: ARRSLQGPTPLEGTGAFWGIGRT*PLGLCE
Trigger: CTCACAAAGCCCAAGGGGCCAGGTCCTGCCTATCCC...CCAAAACGCCCCAGTACCTTCCAAAGGTGTTGGCCCTTGCAGGCTCCTTCGGGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR-3UTR TCA 90 bp ACCTTGTGGCCCGAGGAAAGACCTGTGACCCTAGGGCTTGCCCTCTCTCCAGATGGAAGGAAGAGGAGCTaGCTGGCCATGAAGACGCCC +
Preference number: 2 (lower is better)
Translates to: TLWPEERPVTLGLALSPDGRKRS*LAMKTP
Trigger: GGGCGTCTTCATGGCCAGTCAGCTCCTCTTCCTTCC...ATCTGGAGAGAGGGCAAGCCCTAGGGTCACAGGTCTTTCCTCGGGCCACAAGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR-3UTR GCA 90 bp ACCAGCCCAAACCTTGTGGCCCGAGGAAAGACCTGTGACCCTAGGGCTTGCCCTATGCCCGAAGGAGCCTaGAAGGGCCAACACCTTTGG +
Preference number: 2 (lower is better)
Translates to: TSPNLVARGKTCDPRACPMPEGA*KGQHLW
Trigger: CCAAAGGTGTTGGCCCTTGCAGGCTCCTTCGGGCAT...AGGGCAAGCCCTAGGGTCACAGGTCTTTCCTCGGGCCACAAGGTTTGGGCTGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR-3UTR CCA 90 bp CCTCGGGCTTCAGATATAGCATGGATTGTTCTAGAGGCAGGGAGGGGGTGGCAGCCCTCCTCTGCTTGGTaGCCTGAGAGGGCCTGTCTC +
Preference number: 2 (lower is better)
Translates to: PRASDIAWIVLEAGRGWQPSSAW*PERACL
Trigger: GAGACAGGCCCTCTCAGGCCACCAAGCAGAGGAGGG...CTGCCACCCCCTCCCTGCCTCTAGAACAATCCATGCTATATCTGAAGCCCGAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000182539.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR-3UTR CCA 90 bp GGGGAAGAAGGGAGGGAAAGAGCAACCGCCAGGGTTACCACCACTTGTGGGGTAGGGATAGGCAGGACCTaGCCCCTTGGGCTTTGTGAG +
Preference number: 2 (lower is better)
Translates to: GEEGRERATARVTTTCGVGIGRT*PLGLCE
Trigger: CTCACAAAGCCCAAGGGGCCAGGTCCTGCCTATCCC...TACCCCACAAGTGGTGGTAACCCTGGCGGTTGCTCTTTCCCTCCCTTCTTCCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR-3UTR CCA 90 bp TGGGCCACCAGCCCAAACCTTGTGGCCCGAGGAAAGACCTGTGACCCTAGGGCTCCAGGACAGCCAAGCTaGTTGAGTGGGAAGGAAGAG +
Preference number: 2 (lower is better)
Translates to: WATSPNLVARGKTCDPRAPGQPS*LSGKEE
Trigger: CTCTTCCTTCCCACTCAACCAGCTTGGCTGTCCTGG...AGCCCTAGGGTCACAGGTCTTTCCTCGGGCCACAAGGTTTGGGCTGGTGGCCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR-3UTR TCA 90 bp GGAAAGAGCAACCGCCAGGGTTACCACCACTTGTGGGGTACAGGCCTCACTGTAGGAAGGAAGAGGAGCTaGCTGGCCATGAAGACGCCC +
Preference number: 2 (lower is better)
Translates to: GKSNRQGYHHLWGTGLTVGRKRS*LAMKTP
Trigger: GGGCGTCTTCATGGCCAGTCAGCTCCTCTTCCTTCC...TACAGTGAGGCCTGTACCCCACAAGTGGTGGTAACCCTGGCGGTTGCTCTTTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR-3UTR GCA 90 bp GGGGAAGAAGGGAGGGAAAGAGCAACCGCCAGGGTTACCACCACTTGTGGGGTAATGCCCGAAGGAGCCTaGAAGGGCCAACACCTTTGG +
Preference number: 2 (lower is better)
Translates to: GEEGRERATARVTTTCGVMPEGA*KGQHLW
Trigger: CCAAAGGTGTTGGCCCTTGCAGGCTCCTTCGGGCAT...TACCCCACAAGTGGTGGTAACCCTGGCGGTTGCTCTTTCCCTCCCTTCTTCCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR-3UTR CCA 90 bp CCAGGACAGCCAAGCTGGTTGAGTGGGAAGGAAGAGGAGCTGACTGGCCATGAAGGGATAGGCAGGACCTaGCCCCTTGGGCTTTGTGAG +
Preference number: 2 (lower is better)
Translates to: PGQPSWLSGKEEELTGHEGIGRT*PLGLCE
Trigger: CTCACAAAGCCCAAGGGGCCAGGTCCTGCCTATCCC...TTCATGGCCAGTCAGCTCCTCTTCCTTCCCACTCAACCAGCTTGGCTGTCCTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000182539.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR-3UTR GCA 90 bp ACCAGCCCAAACCTTGTGGCCCGAGGAAAGACCTGTGACCCTAGGGCTTGCCCTCAGTGTATGGGTTCTTaGTCTGGCCAAAGCCTAGGC +
Preference number: 2 (lower is better)
Translates to: TSPNLVARGKTCDPRACPQCMGS*SGQSLG
Trigger: GCCTAGGCTTTGGCCAGAGCAAGAACCCATACACTG...AGGGCAAGCCCTAGGGTCACAGGTCTTTCCTCGGGCCACAAGGTTTGGGCTGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR-3UTR CCA 90 bp ACCAGCCCAAACCTTGTGGCCCGAGGAAAGACCTGTGACCCTAGGGCTTGCCCTGGTTACCACCACTTGTaGGGTACAGGCCTCACTGTA +
Preference number: 2 (lower is better)
Translates to: TSPNLVARGKTCDPRACPGYHHL*GTGLTV
Trigger: TACAGTGAGGCCTGTACCCCACAAGTGGTGGTAACC...AGGGCAAGCCCTAGGGTCACAGGTCTTTCCTCGGGCCACAAGGTTTGGGCTGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR CAA 90 bp AAGGAGCCTGCAAGGGCCAACACCTTTGGAAGGTACTGGGGCGTTTaGGCAACTGAGAAGGTTGGAGCCCCGGACAGAAGAGGGACTCAA +
Preference number: 2 (lower is better)
Translates to: KEPARANTFGRYWGV*ATEKVGAPDRRGTQ
Trigger: TTGAGTCCCTCTTCTGTCCGGGGCTCCAACCTTCTCAGTTGCCAAAACGCCCCAGTACCTTCCAAAGGTGTTGGCCCTTGCAGGCTCCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR-3UTR TCA 90 bp TGGGCCACCAGCCCAAACCTTGTGGCCCGAGGAAAGACCTGTGACCCTAGGGCTCTGTTTGTATTTCTCTaGCCATCATGGCCCAGGACA +
Preference number: 2 (lower is better)
Translates to: WATSPNLVARGKTCDPRALFVFL*PSWPRT
Trigger: TGTCCTGGGCCATGATGGTCAGAGAAATACAAACAG...AGCCCTAGGGTCACAGGTCTTTCCTCGGGCCACAAGGTTTGGGCTGGTGGCCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR-3UTR CCA 90 bp ACCAGCCCAAACCTTGTGGCCCGAGGAAAGACCTGTGACCCTAGGGCTTGCCCTTATGGGTTCTTGCTCTaGCCAAAGCCTAGGCTGTTC +
Preference number: 2 (lower is better)
Translates to: TSPNLVARGKTCDPRACPYGFLL*PKPRLF
Trigger: GAACAGCCTAGGCTTTGGCCAGAGCAAGAACCCATA...AGGGCAAGCCCTAGGGTCACAGGTCTTTCCTCGGGCCACAAGGTTTGGGCTGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR-3UTR TCA 90 bp GGATGCCCGAAGGAGCCTGCAAGGGCCAACACCTTTGGAAGGTACTGGGGCGTTCTGTTTGTATTTCTCTaGCCATCATGGCCCAGGACA +
Preference number: 2 (lower is better)
Translates to: GCPKEPARANTFGRYWGVLFVFL*PSWPRT
Trigger: TGTCCTGGGCCATGATGGTCAGAGAAATACAAACAG...AACGCCCCAGTACCTTCCAAAGGTGTTGGCCCTTGCAGGCTCCTTCGGGCATCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR-3UTR GCA 90 bp GGAAAGAGCAACCGCCAGGGTTACCACCACTTGTGGGGTACAGGCCTCACTGTACAGTGTATGGGTTCTTaGTCTGGCCAAAGCCTAGGC +
Preference number: 2 (lower is better)
Translates to: GKSNRQGYHHLWGTGLTVQCMGS*SGQSLG
Trigger: GCCTAGGCTTTGGCCAGAGCAAGAACCCATACACTG...TACAGTGAGGCCTGTACCCCACAAGTGGTGGTAACCCTGGCGGTTGCTCTTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR-3UTR CCA 90 bp AAGCTAAGCAGCAAGCAAAGCAACAGTGTATGGGTTCTTGCTCTGGCCAAAGCCCCCTCCTCTGCTTGGTaGCCTGAGAGGGCCTGTCTC +
Preference number: 2 (lower is better)
Translates to: KLSSKQSNSVWVLALAKAPSSAW*PERACL
Trigger: GAGACAGGCCCTCTCAGGCCACCAAGCAGAGGAGGG...GGCTTTGGCCAGAGCAAGAACCCATACACTGTTGCTTTGCTTGCTGCTTAGCTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR-3UTR CCA 90 bp TGGGCCACCAGCCCAAACCTTGTGGCCCGAGGAAAGACCTGTGACCCTAGGGCTCAAAGCAACAGTGTATaGGTTCTTGCTCTGGCCAAA +
Preference number: 2 (lower is better)
Translates to: WATSPNLVARGKTCDPRAQSNSV*VLALAK
Trigger: TTTGGCCAGAGCAAGAACCCATACACTGTTGCTTTG...AGCCCTAGGGTCACAGGTCTTTCCTCGGGCCACAAGGTTTGGGCTGGTGGCCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR-3UTR CCA 90 bp GCCACCAGCCCAAACCTTGTGGCCCGAGGAAAGACCTGTGACCCTAGGGCTTGCCAAAGCAACAGTGTATaGGTTCTTGCTCTGGCCAAA +
Preference number: 2 (lower is better)
Translates to: ATSPNLVARGKTCDPRACQSNSV*VLALAK
Trigger: TTTGGCCAGAGCAAGAACCCATACACTGTTGCTTTG...GCAAGCCCTAGGGTCACAGGTCTTTCCTCGGGCCACAAGGTTTGGGCTGGTGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR CAA 90 bp TGTTTGTATTTCTCTGACCATCATGGCCCAGGACAGCCAAGCTGGTaGAGTGGGAAGGAAGAGGAGCTGACTGGCCATGAAGACGCCCCT +
Preference number: 2 (lower is better)
Translates to: CLYFSDHHGPGQPSW*SGKEEELTGHEDAP
Trigger: AGGGGCGTCTTCATGGCCAGTCAGCTCCTCTTCCTTCCCACTCAACCAGCTTGGCTGTCCTGGGCCATGATGGTCAGAGAAATACAAACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000182539.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR-3UTR TCA 90 bp AAGCTAAGCAGCAAGCAAAGCAACAGTGTATGGGTTCTTGCTCTGGCCAAAGCCGGAAGGAAGAGGAGCTaGCTGGCCATGAAGACGCCC +
Preference number: 2 (lower is better)
Translates to: KLSSKQSNSVWVLALAKAGRKRS*LAMKTP
Trigger: GGGCGTCTTCATGGCCAGTCAGCTCCTCTTCCTTCC...GGCTTTGGCCAGAGCAAGAACCCATACACTGTTGCTTTGCTTGCTGCTTAGCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR-3UTR GCA 90 bp TGGGCCACCAGCCCAAACCTTGTGGCCCGAGGAAAGACCTGTGACCCTAGGGCTGGGACTCAAAAGAAATaGTGGTGTGTGGATTTTACC +
Preference number: 2 (lower is better)
Translates to: WATSPNLVARGKTCDPRAGTQKK*WCVDFT
Trigger: GGTAAAATCCACACACCAGCATTTCTTTTGAGTCCC...AGCCCTAGGGTCACAGGTCTTTCCTCGGGCCACAAGGTTTGGGCTGGTGGCCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR-3UTR CCA 90 bp GGAAAGAGCAACCGCCAGGGTTACCACCACTTGTGGGGTACAGGCCTCACTGTATATGGGTTCTTGCTCTaGCCAAAGCCTAGGCTGTTC +
Preference number: 2 (lower is better)
Translates to: GKSNRQGYHHLWGTGLTVYGFLL*PKPRLF
Trigger: GAACAGCCTAGGCTTTGGCCAGAGCAAGAACCCATA...TACAGTGAGGCCTGTACCCCACAAGTGGTGGTAACCCTGGCGGTTGCTCTTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR CAA 90 bp AGGGGAAGAAGGGAGGGAAAGAGCAACCGCCAGGGTTACCACCACTaGTGGGGTACAGGCCTCACTGTACCCTCTTACAGTTGTATTCAA +
Preference number: 2 (lower is better)
Translates to: RGRREGKSNRQGYHH*WGTGLTVPSYSCIQ
Trigger: TTGAATACAACTGTAAGAGGGTACAGTGAGGCCTGTACCCCACAAGTGGTGGTAACCCTGGCGGTTGCTCTTTCCCTCCCTTCTTCCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR-3UTR CCA 90 bp ACCCCACAATCACAGAAGCTAAGCAGCAAGCAAAGCAACAGTGTATGGGTTCTTCCCTCCTCTGCTTGGTaGCCTGAGAGGGCCTGTCTC +
Preference number: 2 (lower is better)
Translates to: TPQSQKLSSKQSNSVWVLPSSAW*PERACL
Trigger: GAGACAGGCCCTCTCAGGCCACCAAGCAGAGGAGGG...AAGAACCCATACACTGTTGCTTTGCTTGCTGCTTAGCTTCTGTGATTGTGGGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR-3UTR CCA 90 bp CGGGATGCCCGAAGGAGCCTGCAAGGGCCAACACCTTTGGAAGGTACTGGGGCGACTCAAAAGAAATGCTaGTGTGTGGATTTTACCTGT +
Preference number: 2 (lower is better)
Translates to: RDARRSLQGPTPLEGTGATQKKC*CVDFTC
Trigger: ACAGGTAAAATCCACACACCAGCATTTCTTTTGAGT...CGCCCCAGTACCTTCCAAAGGTGTTGGCCCTTGCAGGCTCCTTCGGGCATCCCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR-3UTR TCA 90 bp ACCCCACAATCACAGAAGCTAAGCAGCAAGCAAAGCAACAGTGTATGGGTTCTTGGAAGGAAGAGGAGCTaGCTGGCCATGAAGACGCCC +
Preference number: 2 (lower is better)
Translates to: TPQSQKLSSKQSNSVWVLGRKRS*LAMKTP
Trigger: GGGCGTCTTCATGGCCAGTCAGCTCCTCTTCCTTCC...AAGAACCCATACACTGTTGCTTTGCTTGCTGCTTAGCTTCTGTGATTGTGGGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR-3UTR GCA 90 bp GGGGAAGAAGGGAGGGAAAGAGCAACCGCCAGGGTTACCACCACTTGTGGGGTAGGGACTCAAAAGAAATaGTGGTGTGTGGATTTTACC +
Preference number: 2 (lower is better)
Translates to: GEEGRERATARVTTTCGVGTQKK*WCVDFT
Trigger: GGTAAAATCCACACACCAGCATTTCTTTTGAGTCCC...TACCCCACAAGTGGTGGTAACCCTGGCGGTTGCTCTTTCCCTCCCTTCTTCCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR-3UTR CCA 90 bp GCTAAGCAGCAAGCAAAGCAACAGTGTATGGGTTCTTGCTCTGGCCAAAGCCTAGCCAAGCTGGTTGAGTaGGAAGGAAGAGGAGCTGAC +
Preference number: 2 (lower is better)
Translates to: AKQQAKQQCMGSCSGQSLAKLVE*EGRGAD
Trigger: GTCAGCTCCTCTTCCTTCCCACTCAACCAGCTTGGC...TAGGCTTTGGCCAGAGCAAGAACCCATACACTGTTGCTTTGCTTGCTGCTTAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR-3UTR CCA 90 bp AAATGCTGGTGTGTGGATTTTACCTGTTTGTATTTCTCTGACCATCATGGCCCACCCTCCTCTGCTTGGTaGCCTGAGAGGGCCTGTCTC +
Preference number: 2 (lower is better)
Translates to: KCWCVDFTCLYFSDHHGPPSSAW*PERACL
Trigger: GAGACAGGCCCTCTCAGGCCACCAAGCAGAGGAGGG...TGGGCCATGATGGTCAGAGAAATACAAACAGGTAAAATCCACACACCAGCATTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000182539.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR-3UTR CCA 90 bp GGACTCAAAAGAAATGCTGGTGTGTGGATTTTACCTGTTTGTATTTCTCTGACCGGCCCCTCCTCTGCTTaGTGGCCTGAGAGGGCCTGT +
Preference number: 2 (lower is better)
Translates to: GLKRNAGVWILPVCISLTGPSSA*WPERAC
Trigger: ACAGGCCCTCTCAGGCCACCAAGCAGAGGAGGGGCC...GGTCAGAGAAATACAAACAGGTAAAATCCACACACCAGCATTTCTTTTGAGTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000182539.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR-3UTR CCA 90 bp GGATGCCCGAAGGAGCCTGCAAGGGCCAACACCTTTGGAAGGTACTGGGGCGTTACTCAAAAGAAATGCTaGTGTGTGGATTTTACCTGT +
Preference number: 2 (lower is better)
Translates to: GCPKEPARANTFGRYWGVTQKKC*CVDFTC
Trigger: ACAGGTAAAATCCACACACCAGCATTTCTTTTGAGT...AACGCCCCAGTACCTTCCAAAGGTGTTGGCCCTTGCAGGCTCCTTCGGGCATCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR-3UTR CCA 90 bp AAGAGGGACTCAAAAGAAATGCTGGTGTGTGGATTTTACCTGTTTGTATTTCTCGGGATAGGCAGGACCTaGCCCCTTGGGCTTTGTGAG +
Preference number: 2 (lower is better)
Translates to: KRDSKEMLVCGFYLFVFLGIGRT*PLGLCE
Trigger: CTCACAAAGCCCAAGGGGCCAGGTCCTGCCTATCCC...GAGAAATACAAACAGGTAAAATCCACACACCAGCATTTCTTTTGAGTCCCTCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000182539.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR-3UTR CCA 90 bp CAGAAGAGGGACTCAAAAGAAATGCTGGTGTGTGGATTTTACCTGTTTGTATTTGGGATAGGCAGGACCTaGCCCCTTGGGCTTTGTGAG +
Preference number: 2 (lower is better)
Translates to: QKRDSKEMLVCGFYLFVFGIGRT*PLGLCE
Trigger: CTCACAAAGCCCAAGGGGCCAGGTCCTGCCTATCCC...AAATACAAACAGGTAAAATCCACACACCAGCATTTCTTTTGAGTCCCTCTTCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000182539.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR-3UTR CCA 90 bp GGACAGAAGAGGGACTCAAAAGAAATGCTGGTGTGTGGATTTTACCTGTTTGTAGCCAAGCTGGTTGAGTaGGAAGGAAGAGGAGCTGAC +
Preference number: 2 (lower is better)
Translates to: GQKRDSKEMLVCGFYLFVAKLVE*EGRGAD
Trigger: GTCAGCTCCTCTTCCTTCCCACTCAACCAGCTTGGC...TACAAACAGGTAAAATCCACACACCAGCATTTCTTTTGAGTCCCTCTTCTGTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000182539.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR-3UTR CCA 90 bp GGACAGAAGAGGGACTCAAAAGAAATGCTGGTGTGTGGATTTTACCTGTTTGTACCAGGACAGCCAAGCTaGTTGAGTGGGAAGGAAGAG +
Preference number: 2 (lower is better)
Translates to: GQKRDSKEMLVCGFYLFVPGQPS*LSGKEE
Trigger: CTCTTCCTTCCCACTCAACCAGCTTGGCTGTCCTGG...TACAAACAGGTAAAATCCACACACCAGCATTTCTTTTGAGTCCCTCTTCTGTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000182539.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR-3UTR CCA 90 bp GGAAAGAGCAACCGCCAGGGTTACCACCACTTGTGGGGTACAGGCCTCACTGTAAGAAATGCTGGTGTGTaGATTTTACCTGTTTGTATT +
Preference number: 2 (lower is better)
Translates to: GKSNRQGYHHLWGTGLTVRNAGV*ILPVCI
Trigger: AATACAAACAGGTAAAATCCACACACCAGCATTTCT...TACAGTGAGGCCTGTACCCCACAAGTGGTGGTAACCCTGGCGGTTGCTCTTTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR CAA 90 bp AGAAGAGGGACTCAAAAGAAATGCTGGTGTGTGGATTTTACCTGTTaGTATTTCTCTGACCATCATGGCCCAGGACAGCCAAGCTGGTTG +
Preference number: 2 (lower is better)
Translates to: RRGTQKKCWCVDFTC*YFSDHHGPGQPSWL
Trigger: CAACCAGCTTGGCTGTCCTGGGCCATGATGGTCAGAGAAATACAAACAGGTAAAATCCACACACCAGCATTTCTTTTGAGTCCCTCTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000182539.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR-3UTR CCA 90 bp GGACTCAAAAGAAATGCTGGTGTGTGGATTTTACCTGTTTGTATTTCTCTGACCGCCAAGCTGGTTGAGTaGGAAGGAAGAGGAGCTGAC +
Preference number: 2 (lower is better)
Translates to: GLKRNAGVWILPVCISLTAKLVE*EGRGAD
Trigger: GTCAGCTCCTCTTCCTTCCCACTCAACCAGCTTGGC...GGTCAGAGAAATACAAACAGGTAAAATCCACACACCAGCATTTCTTTTGAGTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000182539.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR-3UTR CCA 90 bp ACCCCACAATCACAGAAGCTAAGCAGCAAGCAAAGCAACAGTGTATGGGTTCTTAGAAATGCTGGTGTGTaGATTTTACCTGTTTGTATT +
Preference number: 2 (lower is better)
Translates to: TPQSQKLSSKQSNSVWVLRNAGV*ILPVCI
Trigger: AATACAAACAGGTAAAATCCACACACCAGCATTTCT...AAGAACCCATACACTGTTGCTTTGCTTGCTGCTTAGCTTCTGTGATTGTGGGGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR-3UTR CCA 90 bp GGTACAGGCCTCACTGTACCCTCTTACAGTTGTATTCAAAGCAATAAATTAAAAACTCAAAAGAAATGCTaGTGTGTGGATTTTACCTGT +
Preference number: 2 (lower is better)
Translates to: GTGLTVPSYSCIQSNKLKTQKKC*CVDFTC
Trigger: ACAGGTAAAATCCACACACCAGCATTTCTTTTGAGT...TTTTAATTTATTGCTTTGAATACAACTGTAAGAGGGTACAGTGAGGCCTGTACC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR-3UTR CCA 90 bp GGTACAGGCCTCACTGTACCCTCTTACAGTTGTATTCAAAGCAATAAATTAAAAAGAAATGCTGGTGTGTaGATTTTACCTGTTTGTATT +
Preference number: 2 (lower is better)
Translates to: GTGLTVPSYSCIQSNKLKRNAGV*ILPVCI
Trigger: AATACAAACAGGTAAAATCCACACACCAGCATTTCT...TTTTAATTTATTGCTTTGAATACAACTGTAAGAGGGTACAGTGAGGCCTGTACC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR-3UTR CAA 90 bp CGGGATGCCCGAAGGAGCCTGCAAGGGCCAACACCTTTGGAAGGTACTGGGGCGGCAGGACCTGGCCCCTaGGGCTTTGTGAGGGGGAAG +
Preference number: 3 (lower is better)
Translates to: RDARRSLQGPTPLEGTGAAGPGP*GFVRGK
Trigger: CTTCCCCCTCACAAAGCCCAAGGGGCCAGGTCCTGC...CGCCCCAGTACCTTCCAAAGGTGTTGGCCCTTGCAGGCTCCTTCGGGCATCCCG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR-3UTR CAA 90 bp GCCACCAGCCCAAACCTTGTGGCCCGAGGAAAGACCTGTGACCCTAGGGCTTGCGCAGGACCTGGCCCCTaGGGCTTTGTGAGGGGGAAG +
Preference number: 3 (lower is better)
Translates to: ATSPNLVARGKTCDPRACAGPGP*GFVRGK
Trigger: CTTCCCCCTCACAAAGCCCAAGGGGCCAGGTCCTGC...GCAAGCCCTAGGGTCACAGGTCTTTCCTCGGGCCACAAGGTTTGGGCTGGTGGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR-3UTR CAA 90 bp GGATGCCCGAAGGAGCCTGCAAGGGCCAACACCTTTGGAAGGTACTGGGGCGTTGCAGGACCTGGCCCCTaGGGCTTTGTGAGGGGGAAG +
Preference number: 3 (lower is better)
Translates to: GCPKEPARANTFGRYWGVAGPGP*GFVRGK
Trigger: CTTCCCCCTCACAAAGCCCAAGGGGCCAGGTCCTGC...AACGCCCCAGTACCTTCCAAAGGTGTTGGCCCTTGCAGGCTCCTTCGGGCATCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR-3UTR CAA 90 bp CGGGATGCCCGAAGGAGCCTGCAAGGGCCAACACCTTTGGAAGGTACTGGGGCGGGACAGCCAAGCTGGTaGAGTGGGAAGGAAGAGGAG +
Preference number: 3 (lower is better)
Translates to: RDARRSLQGPTPLEGTGAGQPSW*SGKEEE
Trigger: CTCCTCTTCCTTCCCACTCAACCAGCTTGGCTGTCC...CGCCCCAGTACCTTCCAAAGGTGTTGGCCCTTGCAGGCTCCTTCGGGCATCCCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR-3UTR CAA 90 bp TCTGACCATCATGGCCCAGGACAGCCAAGCTGGTTGAGTGGGAAGGAAGAGGAGGCAGGACCTGGCCCCTaGGGCTTTGTGAGGGGGAAG +
Preference number: 3 (lower is better)
Translates to: SDHHGPGQPSWLSGKEEEAGPGP*GFVRGK
Trigger: CTTCCCCCTCACAAAGCCCAAGGGGCCAGGTCCTGC...CTCCTCTTCCTTCCCACTCAACCAGCTTGGCTGTCCTGGGCCATGATGGTCAGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000182539.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR-3UTR CAA 90 bp TGGGCCACCAGCCCAAACCTTGTGGCCCGAGGAAAGACCTGTGACCCTAGGGCTTGGCAACTGAGAAGGTaGGAGCCCCGGACAGAAGAG +
Preference number: 3 (lower is better)
Translates to: WATSPNLVARGKTCDPRAWQLRR*EPRTEE
Trigger: CTCTTCTGTCCGGGGCTCCAACCTTCTCAGTTGCCA...AGCCCTAGGGTCACAGGTCTTTCCTCGGGCCACAAGGTTTGGGCTGGTGGCCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR-3UTR CAA 90 bp GCCACCAGCCCAAACCTTGTGGCCCGAGGAAAGACCTGTGACCCTAGGGCTTGCCAGGGTTACCACCACTaGTGGGGTACAGGCCTCACT +
Preference number: 3 (lower is better)
Translates to: ATSPNLVARGKTCDPRACQGYHH*WGTGLT
Trigger: AGTGAGGCCTGTACCCCACAAGTGGTGGTAACCCTG...GCAAGCCCTAGGGTCACAGGTCTTTCCTCGGGCCACAAGGTTTGGGCTGGTGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR-3UTR CAA 90 bp ACCAGCCCAAACCTTGTGGCCCGAGGAAAGACCTGTGACCCTAGGGCTTGCCCTACAGTGTATGGGTTCTaGCTCTGGCCAAAGCCTAGG +
Preference number: 3 (lower is better)
Translates to: TSPNLVARGKTCDPRACPTVYGF*LWPKPR
Trigger: CCTAGGCTTTGGCCAGAGCAAGAACCCATACACTGT...AGGGCAAGCCCTAGGGTCACAGGTCTTTCCTCGGGCCACAAGGTTTGGGCTGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR CCA 72 bp AAGGAGCCTGCAAGGGCCAACACCTTTGGAAGGTACTaGGGCGTTTTGGCAACTGAGAAGGTTGGAGCCCCG +
Preference number: 3 (lower is better)
Translates to: KEPARANTFGRY*GVLATEKVGAP
Trigger: CGGGGCTCCAACCTTCTCAGTTGCCAAAACGCCCCAGTACCTTCCAAAGGTGTTGGCCCTTGCAGGCTCCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR-3UTR CAA 90 bp GCTAAGCAGCAAGCAAAGCAACAGTGTATGGGTTCTTGCTCTGGCCAAAGCCTAGCAGGACCTGGCCCCTaGGGCTTTGTGAGGGGGAAG +
Preference number: 3 (lower is better)
Translates to: AKQQAKQQCMGSCSGQSLAGPGP*GFVRGK
Trigger: CTTCCCCCTCACAAAGCCCAAGGGGCCAGGTCCTGC...TAGGCTTTGGCCAGAGCAAGAACCCATACACTGTTGCTTTGCTTGCTGCTTAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR GCA 72 bp CCATCTAGGGCAGCTCCTCATAAGCTTCTATCGGGATaGCCGAAGGAGCCTGCAAGGGCCAACACCTTTGGA +
Preference number: 3 (lower is better)
Translates to: PSRAAPHKLLSG*PKEPARANTFG
Trigger: TCCAAAGGTGTTGGCCCTTGCAGGCTCCTTCGGGCATCCCGATAGAAGCTTATGAGGAGCTGCCCTAGATGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR CCA 72 bp GAGGGAAAGAGCAACCGCCAGGGTTACCACCACTTGTaGGGTACAGGCCTCACTGTACCCTCTTACAGTTGT +
Preference number: 3 (lower is better)
Translates to: EGKSNRQGYHHL*GTGLTVPSYSC
Trigger: ACAACTGTAAGAGGGTACAGTGAGGCCTGTACCCCACAAGTGGTGGTAACCCTGGCGGTTGCTCTTTCCCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR CCA 72 bp TATTTCTCTGACCATCATGGCCCAGGACAGCCAAGCTaGTTGAGTGGGAAGGAAGAGGAGCTGACTGGCCAT +
Preference number: 3 (lower is better)
Translates to: YFSDHHGPGQPS*LSGKEEELTGH
Trigger: ATGGCCAGTCAGCTCCTCTTCCTTCCCACTCAACCAGCTTGGCTGTCCTGGGCCATGATGGTCAGAGAAATA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000182539.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR-3UTR CAA 90 bp CGGGATGCCCGAAGGAGCCTGCAAGGGCCAACACCTTTGGAAGGTACTGGGGCGGTGGATTTTACCTGTTaGTATTTCTCTGACCATCAT +
Preference number: 3 (lower is better)
Translates to: RDARRSLQGPTPLEGTGAVDFTC*YFSDHH
Trigger: ATGATGGTCAGAGAAATACAAACAGGTAAAATCCAC...CGCCCCAGTACCTTCCAAAGGTGTTGGCCCTTGCAGGCTCCTTCGGGCATCCCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR-3UTR CAA 90 bp TGGGCCACCAGCCCAAACCTTGTGGCCCGAGGAAAGACCTGTGACCCTAGGGCTGTGGATTTTACCTGTTaGTATTTCTCTGACCATCAT +
Preference number: 3 (lower is better)
Translates to: WATSPNLVARGKTCDPRAVDFTC*YFSDHH
Trigger: ATGATGGTCAGAGAAATACAAACAGGTAAAATCCAC...AGCCCTAGGGTCACAGGTCTTTCCTCGGGCCACAAGGTTTGGGCTGGTGGCCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR-3UTR CAA 90 bp ACCTTGTGGCCCGAGGAAAGACCTGTGACCCTAGGGCTTGCCCTCTCTCCAGATGTGGATTTTACCTGTTaGTATTTCTCTGACCATCAT +
Preference number: 3 (lower is better)
Translates to: TLWPEERPVTLGLALSPDVDFTC*YFSDHH
Trigger: ATGATGGTCAGAGAAATACAAACAGGTAAAATCCAC...ATCTGGAGAGAGGGCAAGCCCTAGGGTCACAGGTCTTTCCTCGGGCCACAAGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR-3UTR CAA 90 bp GGGGAAGAAGGGAGGGAAAGAGCAACCGCCAGGGTTACCACCACTTGTGGGGTAGTGGATTTTACCTGTTaGTATTTCTCTGACCATCAT +
Preference number: 3 (lower is better)
Translates to: GEEGRERATARVTTTCGVVDFTC*YFSDHH
Trigger: ATGATGGTCAGAGAAATACAAACAGGTAAAATCCAC...TACCCCACAAGTGGTGGTAACCCTGGCGGTTGCTCTTTCCCTCCCTTCTTCCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR-3UTR CAA 90 bp GGACAGAAGAGGGACTCAAAAGAAATGCTGGTGTGTGGATTTTACCTGTTTGTAGGACAGCCAAGCTGGTaGAGTGGGAAGGAAGAGGAG +
Preference number: 3 (lower is better)
Translates to: GQKRDSKEMLVCGFYLFVGQPSW*SGKEEE
Trigger: CTCCTCTTCCTTCCCACTCAACCAGCTTGGCTGTCC...TACAAACAGGTAAAATCCACACACCAGCATTTCTTTTGAGTCCCTCTTCTGTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000182539.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR-3UTR CAA 90 bp GGTACAGGCCTCACTGTACCCTCTTACAGTTGTATTCAAAGCAATAAATTAAAAGGACAGCCAAGCTGGTaGAGTGGGAAGGAAGAGGAG +
Preference number: 3 (lower is better)
Translates to: GTGLTVPSYSCIQSNKLKGQPSW*SGKEEE
Trigger: CTCCTCTTCCTTCCCACTCAACCAGCTTGGCTGTCC...TTTTAATTTATTGCTTTGAATACAACTGTAAGAGGGTACAGTGAGGCCTGTACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR GCA 90 bp CGGGATGCCCGAAGGAGCCTGCAAGGGCCAACACCTTTGGAAGGTACTGGGGCGGGGGCGCGTGCCGGGTaGCCTCGCAACACAGCAGCT +
Preference number: 4 (lower is better)
Translates to: RDARRSLQGPTPLEGTGAGARAG*PRNTAA
Trigger: AGCTGCTGTGTTGCGAGGGCACCCGGCACGCGCCCC...CGCCCCAGTACCTTCCAAAGGTGTTGGCCCTTGCAGGCTCCTTCGGGCATCCCG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR CCA 90 bp GCCACCAGCCCAAACCTTGTGGCCCGAGGAAAGACCTGTGACCCTAGGGCTTGCCTCTGCAGGACACGCTaGTCCCCAAGCAGCCGCGGG +
Preference number: 4 (lower is better)
Translates to: ATSPNLVARGKTCDPRACLCRTR*SPSSRG
Trigger: CCCGCGGCTGCTTGGGGACCAGCGTGTCCTGCAGAG...GCAAGCCCTAGGGTCACAGGTCTTTCCTCGGGCCACAAGGTTTGGGCTGGTGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR TCA 90 bp GGATGCCCGAAGGAGCCTGCAAGGGCCAACACCTTTGGAAGGTACTGGGGCGTTGGGCTGGGGGCTGTCTaGGCAGCTTCCCTGAGGCTC +
Preference number: 4 (lower is better)
Translates to: GCPKEPARANTFGRYWGVGLGAV*AASLRL
Trigger: GAGCCTCAGGGAAGCTGCTCAGACAGCCCCCAGCCC...AACGCCCCAGTACCTTCCAAAGGTGTTGGCCCTTGCAGGCTCCTTCGGGCATCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR TCA 90 bp GCCCGAAGGAGCCTGCAAGGGCCAACACCTTTGGAAGGTACTGGGGCGTTTTGGGGGCTGGGGGCTGTCTaGGCAGCTTCCCTGAGGCTC +
Preference number: 4 (lower is better)
Translates to: ARRSLQGPTPLEGTGAFWGLGAV*AASLRL
Trigger: GAGCCTCAGGGAAGCTGCTCAGACAGCCCCCAGCCC...CCAAAACGCCCCAGTACCTTCCAAAGGTGTTGGCCCTTGCAGGCTCCTTCGGGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR GCA 90 bp CGGGCTTCAGATATAGCATGGATTGTTCTAGAGGCAGGGAGGGGGTGGCAGGGGGGGGCGCGTGCCGGGTaGCCTCGCAACACAGCAGCT +
Preference number: 4 (lower is better)
Translates to: RASDIAWIVLEAGRGWQGGARAG*PRNTAA
Trigger: AGCTGCTGTGTTGCGAGGGCACCCGGCACGCGCCCC...CCCCTGCCACCCCCTCCCTGCCTCTAGAACAATCCATGCTATATCTGAAGCCCG
64% GC, longest homopolymer 8 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR GCA 90 bp CGGGATGCCCGAAGGAGCCTGCAAGGGCCAACACCTTTGGAAGGTACTGGGGCGGCACGGCTGCCCCAATaGTGCCTGTGGCGATCATGG +
Preference number: 4 (lower is better)
Translates to: RDARRSLQGPTPLEGTGAARLPQ*CLWRSW
Trigger: CCATGATCGCCACAGGCAGCATTGGGGCAGCCGTGC...CGCCCCAGTACCTTCCAAAGGTGTTGGCCCTTGCAGGCTCCTTCGGGCATCCCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR CCA 90 bp CGGGATGCCCGAAGGAGCCTGCAAGGGCCAACACCTTTGGAAGGTACTGGGGCGAAGCCTGCCGGTCACTaGGCAGAGACAGGCGGTGCA +
Preference number: 4 (lower is better)
Translates to: RDARRSLQGPTPLEGTGAKPAGH*AETGGA
Trigger: TGCACCGCCTGTCTCTGCCCAGTGACCGGCAGGCTT...CGCCCCAGTACCTTCCAAAGGTGTTGGCCCTTGCAGGCTCCTTCGGGCATCCCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR TCA 90 bp CGGGATGCCCGAAGGAGCCTGCAAGGGCCAACACCTTTGGAAGGTACTGGGGCGCCACTTCAGTGCCTGTaGTCCCGGCCAGCAACTCTG +
Preference number: 4 (lower is better)
Translates to: RDARRSLQGPTPLEGTGAPLQCL*SRPATL
Trigger: CAGAGTTGCTGGCCGGGATCACAGGCACTGAAGTGG...CGCCCCAGTACCTTCCAAAGGTGTTGGCCCTTGCAGGCTCCTTCGGGCATCCCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR TCA 90 bp ACCAGCCCAAACCTTGTGGCCCGAGGAAAGACCTGTGACCCTAGGGCTTGCCCTGTGGGAGTGCTGGTCTaGCTGGGCCCCTGGCTGCTA +
Preference number: 4 (lower is better)
Translates to: TSPNLVARGKTCDPRACPVGVLV*LGPWLL
Trigger: TAGCAGCCAGGGGCCCAGTCAGACCAGCACTCCCAC...AGGGCAAGCCCTAGGGTCACAGGTCTTTCCTCGGGCCACAAGGTTTGGGCTGGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR TCA 90 bp GCCCGAAGGAGCCTGCAAGGGCCAACACCTTTGGAAGGTACTGGGGCGTTTTGGGTGGGAGTGCTGGTCTaGCTGGGCCCCTGGCTGCTA +
Preference number: 4 (lower is better)
Translates to: ARRSLQGPTPLEGTGAFWVGVLV*LGPWLL
Trigger: TAGCAGCCAGGGGCCCAGTCAGACCAGCACTCCCAC...CCAAAACGCCCCAGTACCTTCCAAAGGTGTTGGCCCTTGCAGGCTCCTTCGGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR GCA 90 bp CCTCGGGCTTCAGATATAGCATGGATTGTTCTAGAGGCAGGGAGGGGGTGGCAGGGGGCGCGTGCCGGGTaGCCTCGCAACACAGCAGCT +
Preference number: 4 (lower is better)
Translates to: PRASDIAWIVLEAGRGWQGARAG*PRNTAA
Trigger: AGCTGCTGTGTTGCGAGGGCACCCGGCACGCGCCCC...CTGCCACCCCCTCCCTGCCTCTAGAACAATCCATGCTATATCTGAAGCCCGAGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR GCA 90 bp TGGGCCACCAGCCCAAACCTTGTGGCCCGAGGAAAGACCTGTGACCCTAGGGCTTCCTCCTCGCAGCGCTaGTCCTCACACACCTCCAGC +
Preference number: 4 (lower is better)
Translates to: WATSPNLVARGKTCDPRASSSQR*SSHTSS
Trigger: GCTGGAGGTGTGTGAGGAGCAGCGCTGCGAGGAGGA...AGCCCTAGGGTCACAGGTCTTTCCTCGGGCCACAAGGTTTGGGCTGGTGGCCCA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR GCA 90 bp CGGGATGCCCGAAGGAGCCTGCAAGGGCCAACACCTTTGGAAGGTACTGGGGCGCGGCTGCCCCAATGCTaGCTGTGGCGATCATGGATG +
Preference number: 4 (lower is better)
Translates to: RDARRSLQGPTPLEGTGARLPQC*LWRSWM
Trigger: CATCCATGATCGCCACAGGCAGCATTGGGGCAGCCG...CGCCCCAGTACCTTCCAAAGGTGTTGGCCCTTGCAGGCTCCTTCGGGCATCCCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR GCA 90 bp GCCACCAGCCCAAACCTTGTGGCCCGAGGAAAGACCTGTGACCCTAGGGCTTGCGCACGGCTGCCCCAATaGTGCCTGTGGCGATCATGG +
Preference number: 4 (lower is better)
Translates to: ATSPNLVARGKTCDPRACARLPQ*CLWRSW
Trigger: CCATGATCGCCACAGGCAGCATTGGGGCAGCCGTGC...GCAAGCCCTAGGGTCACAGGTCTTTCCTCGGGCCACAAGGTTTGGGCTGGTGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR CCA 90 bp TGGGCCACCAGCCCAAACCTTGTGGCCCGAGGAAAGACCTGTGACCCTAGGGCTCTCCCGCAACTGCCATaGAGCCACAGCCTGGTCCGT +
Preference number: 4 (lower is better)
Translates to: WATSPNLVARGKTCDPRALPQLP*SHSLVR
Trigger: ACGGACCAGGCTGTGGCTCCATGGCAGTTGCGGGAG...AGCCCTAGGGTCACAGGTCTTTCCTCGGGCCACAAGGTTTGGGCTGGTGGCCCA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR CCA 90 bp GCCACCAGCCCAAACCTTGTGGCCCGAGGAAAGACCTGTGACCCTAGGGCTTGCCTCCCGCAACTGCCATaGAGCCACAGCCTGGTCCGT +
Preference number: 4 (lower is better)
Translates to: ATSPNLVARGKTCDPRACLPQLP*SHSLVR
Trigger: ACGGACCAGGCTGTGGCTCCATGGCAGTTGCGGGAG...GCAAGCCCTAGGGTCACAGGTCTTTCCTCGGGCCACAAGGTTTGGGCTGGTGGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR TCA 90 bp TGGGCCACCAGCCCAAACCTTGTGGCCCGAGGAAAGACCTGTGACCCTAGGGCTCCACTTCAGTGCCTGTaGTCCCGGCCAGCAACTCTG +
Preference number: 4 (lower is better)
Translates to: WATSPNLVARGKTCDPRAPLQCL*SRPATL
Trigger: CAGAGTTGCTGGCCGGGATCACAGGCACTGAAGTGG...AGCCCTAGGGTCACAGGTCTTTCCTCGGGCCACAAGGTTTGGGCTGGTGGCCCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR TCA 90 bp AGTGGGAAGGAAGAGGAGCTGACTGGCCATGAAGACGCCCCTCATGACCATGCAGGGCTGGGGGCTGTCTaGGCAGCTTCCCTGAGGCTC +
Preference number: 4 (lower is better)
Translates to: SGKEEELTGHEDAPHDHAGLGAV*AASLRL
Trigger: GAGCCTCAGGGAAGCTGCTCAGACAGCCCCCAGCCC...TGCATGGTCATGAGGGGCGTCTTCATGGCCAGTCAGCTCCTCTTCCTTCCCACT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000182539.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR TCA 90 bp CGGGCTTCAGATATAGCATGGATTGTTCTAGAGGCAGGGAGGGGGTGGCAGGGGGTGGGAGTGCTGGTCTaGCTGGGCCCCTGGCTGCTA +
Preference number: 4 (lower is better)
Translates to: RASDIAWIVLEAGRGWQGVGVLV*LGPWLL
Trigger: TAGCAGCCAGGGGCCCAGTCAGACCAGCACTCCCAC...CCCCTGCCACCCCCTCCCTGCCTCTAGAACAATCCATGCTATATCTGAAGCCCG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 6 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000182539.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR GCA 90 bp TGGGCCACCAGCCCAAACCTTGTGGCCCGAGGAAAGACCTGTGACCCTAGGGCTCGGCTGCCCCAATGCTaGCTGTGGCGATCATGGATG +
Preference number: 4 (lower is better)
Translates to: WATSPNLVARGKTCDPRARLPQC*LWRSWM
Trigger: CATCCATGATCGCCACAGGCAGCATTGGGGCAGCCG...AGCCCTAGGGTCACAGGTCTTTCCTCGGGCCACAAGGTTTGGGCTGGTGGCCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR CCA 90 bp GGAAAGAGCAACCGCCAGGGTTACCACCACTTGTGGGGTACAGGCCTCACTGTACTCTGCAGGACACGCTaGTCCCCAAGCAGCCGCGGG +
Preference number: 4 (lower is better)
Translates to: GKSNRQGYHHLWGTGLTVLCRTR*SPSSRG
Trigger: CCCGCGGCTGCTTGGGGACCAGCGTGTCCTGCAGAG...TACAGTGAGGCCTGTACCCCACAAGTGGTGGTAACCCTGGCGGTTGCTCTTTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR CCA 90 bp TCTGACCATCATGGCCCAGGACAGCCAAGCTGGTTGAGTGGGAAGGAAGAGGAGCTCTGCAGGACACGCTaGTCCCCAAGCAGCCGCGGG +
Preference number: 4 (lower is better)
Translates to: SDHHGPGQPSWLSGKEEELCRTR*SPSSRG
Trigger: CCCGCGGCTGCTTGGGGACCAGCGTGTCCTGCAGAG...CTCCTCTTCCTTCCCACTCAACCAGCTTGGCTGTCCTGGGCCATGATGGTCAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR TCA 90 bp GGACAGCCAAGCTGGTTGAGTGGGAAGGAAGAGGAGCTGACTGGCCATGAAGACGTGGGAGTGCTGGTCTaGCTGGGCCCCTGGCTGCTA +
Preference number: 4 (lower is better)
Translates to: GQPSWLSGKEEELTGHEDVGVLV*LGPWLL
Trigger: TAGCAGCCAGGGGCCCAGTCAGACCAGCACTCCCAC...GTCTTCATGGCCAGTCAGCTCCTCTTCCTTCCCACTCAACCAGCTTGGCTGTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000182539.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR GCA 90 bp ACCTTGTGGCCCGAGGAAAGACCTGTGACCCTAGGGCTTGCCCTCTCTCCAGATTCCTCCTCGCAGCGCTaGTCCTCACACACCTCCAGC +
Preference number: 4 (lower is better)
Translates to: TLWPEERPVTLGLALSPDSSSQR*SSHTSS
Trigger: GCTGGAGGTGTGTGAGGAGCAGCGCTGCGAGGAGGA...ATCTGGAGAGAGGGCAAGCCCTAGGGTCACAGGTCTTTCCTCGGGCCACAAGGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR GCA 90 bp TGGGCCACCAGCCCAAACCTTGTGGCCCGAGGAAAGACCTGTGACCCTAGGGCTCCTAGAAGCTGCAATTaGGCCTTTCGGGTGGGGACG +
Preference number: 4 (lower is better)
Translates to: WATSPNLVARGKTCDPRAPRSCN*AFRVGT
Trigger: CGTCCCCACCCGAAAGGCGCAATTGCAGCTTCTAGG...AGCCCTAGGGTCACAGGTCTTTCCTCGGGCCACAAGGTTTGGGCTGGTGGCCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR GCA 90 bp ACCTTGTGGCCCGAGGAAAGACCTGTGACCCTAGGGCTTGCCCTCTCTCCAGATTCCCACTCCCGCAACTaGCATGGAGCCACAGCCTGG +
Preference number: 4 (lower is better)
Translates to: TLWPEERPVTLGLALSPDSHSRN*HGATAW
Trigger: CCAGGCTGTGGCTCCATGGCAGTTGCGGGAGTGGGA...ATCTGGAGAGAGGGCAAGCCCTAGGGTCACAGGTCTTTCCTCGGGCCACAAGGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR GCA 90 bp CGGGCTTCAGATATAGCATGGATTGTTCTAGAGGCAGGGAGGGGGTGGCAGGGGTCCCACTCCCGCAACTaGCATGGAGCCACAGCCTGG +
Preference number: 4 (lower is better)
Translates to: RASDIAWIVLEAGRGWQGSHSRN*HGATAW
Trigger: CCAGGCTGTGGCTCCATGGCAGTTGCGGGAGTGGGA...CCCCTGCCACCCCCTCCCTGCCTCTAGAACAATCCATGCTATATCTGAAGCCCG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR GCA 90 bp ACCAGCCCAAACCTTGTGGCCCGAGGAAAGACCTGTGACCCTAGGGCTTGCCCTAAGGCCAGGAAGTCGTaGGCAATCACGGCAGCCAGG +
Preference number: 4 (lower is better)
Translates to: TSPNLVARGKTCDPRACPKARKS*AITAAR
Trigger: CCTGGCTGCCGTGATTGCGCACGACTTCCTGGCCTT...AGGGCAAGCCCTAGGGTCACAGGTCTTTCCTCGGGCCACAAGGTTTGGGCTGGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR TCA 90 bp ACCTTGTGGCCCGAGGAAAGACCTGTGACCCTAGGGCTTGCCCTCTCTCCAGATCCACTTCAGTGCCTGTaGTCCCGGCCAGCAACTCTG +
Preference number: 4 (lower is better)
Translates to: TLWPEERPVTLGLALSPDPLQCL*SRPATL
Trigger: CAGAGTTGCTGGCCGGGATCACAGGCACTGAAGTGG...ATCTGGAGAGAGGGCAAGCCCTAGGGTCACAGGTCTTTCCTCGGGCCACAAGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR TCA 90 bp CGGGCTTCAGATATAGCATGGATTGTTCTAGAGGCAGGGAGGGGGTGGCAGGGGCCACTTCAGTGCCTGTaGTCCCGGCCAGCAACTCTG +
Preference number: 4 (lower is better)
Translates to: RASDIAWIVLEAGRGWQGPLQCL*SRPATL
Trigger: CAGAGTTGCTGGCCGGGATCACAGGCACTGAAGTGG...CCCCTGCCACCCCCTCCCTGCCTCTAGAACAATCCATGCTATATCTGAAGCCCG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000182539.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR GCA 90 bp ACCAGCCCAAACCTTGTGGCCCGAGGAAAGACCTGTGACCCTAGGGCTTGCCCTAGGCGGAGTAAACTCTaGAGGACACGCTGGTCCCCA +
Preference number: 4 (lower is better)
Translates to: TSPNLVARGKTCDPRACPRRSKL*RTRWSP
Trigger: TGGGGACCAGCGTGTCCTGCAGAGTTTACTCCGCCT...AGGGCAAGCCCTAGGGTCACAGGTCTTTCCTCGGGCCACAAGGTTTGGGCTGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR GCA 90 bp GGATGCCCGAAGGAGCCTGCAAGGGCCAACACCTTTGGAAGGTACTGGGGCGTTCCTAGAAGCTGCAATTaGGCCTTTCGGGTGGGGACG +
Preference number: 4 (lower is better)
Translates to: GCPKEPARANTFGRYWGVPRSCN*AFRVGT
Trigger: CGTCCCCACCCGAAAGGCGCAATTGCAGCTTCTAGG...AACGCCCCAGTACCTTCCAAAGGTGTTGGCCCTTGCAGGCTCCTTCGGGCATCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR GCA 90 bp AGTGGGAAGGAAGAGGAGCTGACTGGCCATGAAGACGCCCCTCATGACCATGCATCCCACTCCCGCAACTaGCATGGAGCCACAGCCTGG +
Preference number: 4 (lower is better)
Translates to: SGKEEELTGHEDAPHDHASHSRN*HGATAW
Trigger: CCAGGCTGTGGCTCCATGGCAGTTGCGGGAGTGGGA...TGCATGGTCATGAGGGGCGTCTTCATGGCCAGTCAGCTCCTCTTCCTTCCCACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR GCA 90 bp ACCTTGTGGCCCGAGGAAAGACCTGTGACCCTAGGGCTTGCCCTCTCTCCAGATAAGGCCAGGAAGTCGTaGGCAATCACGGCAGCCAGG +
Preference number: 4 (lower is better)
Translates to: TLWPEERPVTLGLALSPDKARKS*AITAAR
Trigger: CCTGGCTGCCGTGATTGCGCACGACTTCCTGGCCTT...ATCTGGAGAGAGGGCAAGCCCTAGGGTCACAGGTCTTTCCTCGGGCCACAAGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR GCA 90 bp CGGGCTTCAGATATAGCATGGATTGTTCTAGAGGCAGGGAGGGGGTGGCAGGGGAAGGCCAGGAAGTCGTaGGCAATCACGGCAGCCAGG +
Preference number: 4 (lower is better)
Translates to: RASDIAWIVLEAGRGWQGKARKS*AITAAR
Trigger: CCTGGCTGCCGTGATTGCGCACGACTTCCTGGCCTT...CCCCTGCCACCCCCTCCCTGCCTCTAGAACAATCCATGCTATATCTGAAGCCCG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR GCA 90 bp CCAGGACAGCCAAGCTGGTTGAGTGGGAAGGAAGAGGAGCTGACTGGCCATGAAGCACGGCTGCCCCAATaGTGCCTGTGGCGATCATGG +
Preference number: 4 (lower is better)
Translates to: PGQPSWLSGKEEELTGHEARLPQ*CLWRSW
Trigger: CCATGATCGCCACAGGCAGCATTGGGGCAGCCGTGC...TTCATGGCCAGTCAGCTCCTCTTCCTTCCCACTCAACCAGCTTGGCTGTCCTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000182539.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR GCA 90 bp AGTGGGAAGGAAGAGGAGCTGACTGGCCATGAAGACGCCCCTCATGACCATGCAGCACGGCTGCCCCAATaGTGCCTGTGGCGATCATGG +
Preference number: 4 (lower is better)
Translates to: SGKEEELTGHEDAPHDHAARLPQ*CLWRSW
Trigger: CCATGATCGCCACAGGCAGCATTGGGGCAGCCGTGC...TGCATGGTCATGAGGGGCGTCTTCATGGCCAGTCAGCTCCTCTTCCTTCCCACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000182539.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR CCA 90 bp GCCCGAAGGAGCCTGCAAGGGCCAACACCTTTGGAAGGTACTGGGGCGTTTTGGTGGTTTCGCGCAGCTTaGAGGCCAGCAACAGGCAGA +
Preference number: 4 (lower is better)
Translates to: ARRSLQGPTPLEGTGAFWWFRAA*RPATGR
Trigger: TCTGCCTGTTGCTGGCCTCCAAGCTGCGCGAAACCA...CCAAAACGCCCCAGTACCTTCCAAAGGTGTTGGCCCTTGCAGGCTCCTTCGGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR CCA 90 bp CCAGGACAGCCAAGCTGGTTGAGTGGGAAGGAAGAGGAGCTGACTGGCCATGAACTCCCGCAACTGCCATaGAGCCACAGCCTGGTCCGT +
Preference number: 4 (lower is better)
Translates to: PGQPSWLSGKEEELTGHELPQLP*SHSLVR
Trigger: ACGGACCAGGCTGTGGCTCCATGGCAGTTGCGGGAG...TTCATGGCCAGTCAGCTCCTCTTCCTTCCCACTCAACCAGCTTGGCTGTCCTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR GCA 90 bp GGGGAAGAAGGGAGGGAAAGAGCAACCGCCAGGGTTACCACCACTTGTGGGGTACCTAGAAGCTGCAATTaGGCCTTTCGGGTGGGGACG +
Preference number: 4 (lower is better)
Translates to: GEEGRERATARVTTTCGVPRSCN*AFRVGT
Trigger: CGTCCCCACCCGAAAGGCGCAATTGCAGCTTCTAGG...TACCCCACAAGTGGTGGTAACCCTGGCGGTTGCTCTTTCCCTCCCTTCTTCCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR GCA 90 bp CCAGGACAGCCAAGCTGGTTGAGTGGGAAGGAAGAGGAGCTGACTGGCCATGAAAAGGCCAGGAAGTCGTaGGCAATCACGGCAGCCAGG +
Preference number: 4 (lower is better)
Translates to: PGQPSWLSGKEEELTGHEKARKS*AITAAR
Trigger: CCTGGCTGCCGTGATTGCGCACGACTTCCTGGCCTT...TTCATGGCCAGTCAGCTCCTCTTCCTTCCCACTCAACCAGCTTGGCTGTCCTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR GCA 90 bp GGACAGCCAAGCTGGTTGAGTGGGAAGGAAGAGGAGCTGACTGGCCATGAAGACCGGCTGCCCCAATGCTaGCTGTGGCGATCATGGATG +
Preference number: 4 (lower is better)
Translates to: GQPSWLSGKEEELTGHEDRLPQC*LWRSWM
Trigger: CATCCATGATCGCCACAGGCAGCATTGGGGCAGCCG...GTCTTCATGGCCAGTCAGCTCCTCTTCCTTCCCACTCAACCAGCTTGGCTGTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000182539.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR GCA 90 bp CCAGGACAGCCAAGCTGGTTGAGTGGGAAGGAAGAGGAGCTGACTGGCCATGAAAGGCGGAGTAAACTCTaGAGGACACGCTGGTCCCCA +
Preference number: 4 (lower is better)
Translates to: PGQPSWLSGKEEELTGHERRSKL*RTRWSP
Trigger: TGGGGACCAGCGTGTCCTGCAGAGTTTACTCCGCCT...TTCATGGCCAGTCAGCTCCTCTTCCTTCCCACTCAACCAGCTTGGCTGTCCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR GCA 90 bp CCAGGACAGCCAAGCTGGTTGAGTGGGAAGGAAGAGGAGCTGACTGGCCATGAACCTAGAAGCTGCAATTaGGCCTTTCGGGTGGGGACG +
Preference number: 4 (lower is better)
Translates to: PGQPSWLSGKEEELTGHEPRSCN*AFRVGT
Trigger: CGTCCCCACCCGAAAGGCGCAATTGCAGCTTCTAGG...TTCATGGCCAGTCAGCTCCTCTTCCTTCCCACTCAACCAGCTTGGCTGTCCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR GCA 90 bp GGACAGCCAAGCTGGTTGAGTGGGAAGGAAGAGGAGCTGACTGGCCATGAAGACGGCAGAGACAGGCGGTaGAGAATCAAGGCCAGGAAG +
Preference number: 4 (lower is better)
Translates to: GQPSWLSGKEEELTGHEDGRDRR*RIKARK
Trigger: CTTCCTGGCCTTGATTCTGCACCGCCTGTCTCTGCC...GTCTTCATGGCCAGTCAGCTCCTCTTCCTTCCCACTCAACCAGCTTGGCTGTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR GCA 90 bp CCTCGGGCTTCAGATATAGCATGGATTGTTCTAGAGGCAGGGAGGGGGTGGCAGGGCAGAGACAGGCGGTaGAGAATCAAGGCCAGGAAG +
Preference number: 4 (lower is better)
Translates to: PRASDIAWIVLEAGRGWQGRDRR*RIKARK
Trigger: CTTCCTGGCCTTGATTCTGCACCGCCTGTCTCTGCC...CTGCCACCCCCTCCCTGCCTCTAGAACAATCCATGCTATATCTGAAGCCCGAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR GCA 90 bp TCTGACCATCATGGCCCAGGACAGCCAAGCTGGTTGAGTGGGAAGGAAGAGGAGGGCAGAGACAGGCGGTaGAGAATCAAGGCCAGGAAG +
Preference number: 4 (lower is better)
Translates to: SDHHGPGQPSWLSGKEEEGRDRR*RIKARK
Trigger: CTTCCTGGCCTTGATTCTGCACCGCCTGTCTCTGCC...CTCCTCTTCCTTCCCACTCAACCAGCTTGGCTGTCCTGGGCCATGATGGTCAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR GCA 90 bp ACCAGCCCAAACCTTGTGGCCCGAGGAAAGACCTGTGACCCTAGGGCTTGCCCTTTTTTGACCAAAGCCTaGCGGTCACTGGGCAGAGAC +
Preference number: 4 (lower is better)
Translates to: TSPNLVARGKTCDPRACPFLTKA*RSLGRD
Trigger: GTCTCTGCCCAGTGACCGGCAGGCTTTGGTCAAAAA...AGGGCAAGCCCTAGGGTCACAGGTCTTTCCTCGGGCCACAAGGTTTGGGCTGGT
58% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR GCA 90 bp GGATGCCCGAAGGAGCCTGCAAGGGCCAACACCTTTGGAAGGTACTGGGGCGTTTTTTTGACCAAAGCCTaGCGGTCACTGGGCAGAGAC +
Preference number: 4 (lower is better)
Translates to: GCPKEPARANTFGRYWGVFLTKA*RSLGRD
Trigger: GTCTCTGCCCAGTGACCGGCAGGCTTTGGTCAAAAA...AACGCCCCAGTACCTTCCAAAGGTGTTGGCCCTTGCAGGCTCCTTCGGGCATCC
58% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR CCA 90 bp AGTGGGAAGGAAGAGGAGCTGACTGGCCATGAAGACGCCCCTCATGACCATGCATGGTTTCGCGCAGCTTaGAGGCCAGCAACAGGCAGA +
Preference number: 4 (lower is better)
Translates to: SGKEEELTGHEDAPHDHAWFRAA*RPATGR
Trigger: TCTGCCTGTTGCTGGCCTCCAAGCTGCGCGAAACCA...TGCATGGTCATGAGGGGCGTCTTCATGGCCAGTCAGCTCCTCTTCCTTCCCACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR CCA 90 bp ACCAGCCCAAACCTTGTGGCCCGAGGAAAGACCTGTGACCCTAGGGCTTGCCCTTGCCTGTGGCGATCATaGATGGAGGATACATCGCAA +
Preference number: 4 (lower is better)
Translates to: TSPNLVARGKTCDPRACPCLWRS*MEDTSQ
Trigger: TTGCGATGTATCCTCCATCCATGATCGCCACAGGCA...AGGGCAAGCCCTAGGGTCACAGGTCTTTCCTCGGGCCACAAGGTTTGGGCTGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR CAA 72 bp GCAAGGGCCAACACCTTTGGAAGGTACTGGGGCGTTTaGGCAACTGAGAAGGTTGGAGCCCCGGACAGAAGA +
Preference number: 4 (lower is better)
Translates to: ARANTFGRYWGV*ATEKVGAPDRR
Trigger: TCTTCTGTCCGGGGCTCCAACCTTCTCAGTTGCCAAAACGCCCCAGTACCTTCCAAAGGTGTTGGCCCTTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR GCA 90 bp AGTGGGAAGGAAGAGGAGCTGACTGGCCATGAAGACGCCCCTCATGACCATGCATTTTTGACCAAAGCCTaGCGGTCACTGGGCAGAGAC +
Preference number: 4 (lower is better)
Translates to: SGKEEELTGHEDAPHDHAFLTKA*RSLGRD
Trigger: GTCTCTGCCCAGTGACCGGCAGGCTTTGGTCAAAAA...TGCATGGTCATGAGGGGCGTCTTCATGGCCAGTCAGCTCCTCTTCCTTCCCACT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR GCA 90 bp GGAAAGAGCAACCGCCAGGGTTACCACCACTTGTGGGGTACAGGCCTCACTGTATTTTTGACCAAAGCCTaGCGGTCACTGGGCAGAGAC +
Preference number: 4 (lower is better)
Translates to: GKSNRQGYHHLWGTGLTVFLTKA*RSLGRD
Trigger: GTCTCTGCCCAGTGACCGGCAGGCTTTGGTCAAAAA...TACAGTGAGGCCTGTACCCCACAAGTGGTGGTAACCCTGGCGGTTGCTCTTTCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR GCA 90 bp AAGCTAAGCAGCAAGCAAAGCAACAGTGTATGGGTTCTTGCTCTGGCCAAAGCCGCACGGCTGCCCCAATaGTGCCTGTGGCGATCATGG +
Preference number: 4 (lower is better)
Translates to: KLSSKQSNSVWVLALAKAARLPQ*CLWRSW
Trigger: CCATGATCGCCACAGGCAGCATTGGGGCAGCCGTGC...GGCTTTGGCCAGAGCAAGAACCCATACACTGTTGCTTTGCTTGCTGCTTAGCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR CCA 90 bp ACCAGCCCAAACCTTGTGGCCCGAGGAAAGACCTGTGACCCTAGGGCTTGCCCTTGTGGCGATCATGGATaGAGGATACATCGCAAAGGT +
Preference number: 4 (lower is better)
Translates to: TSPNLVARGKTCDPRACPCGDHG*RIHRKG
Trigger: ACCTTTGCGATGTATCCTCCATCCATGATCGCCACA...AGGGCAAGCCCTAGGGTCACAGGTCTTTCCTCGGGCCACAAGGTTTGGGCTGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
3UTR CAA 72 bp TTCTCTGACCATCATGGCCCAGGACAGCCAAGCTGGTaGAGTGGGAAGGAAGAGGAGCTGACTGGCCATGAA +
Preference number: 4 (lower is better)
Translates to: FSDHHGPGQPSW*SGKEEELTGHE
Trigger: TTCATGGCCAGTCAGCTCCTCTTCCTTCCCACTCAACCAGCTTGGCTGTCCTGGGCCATGATGGTCAGAGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000182539.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR TCA 90 bp CGGACAGAAGAGGGACTCAAAAGAAATGCTGGTGTGTGGATTTTACCTGTTTGTGGGCTGGGGGCTGTCTaGGCAGCTTCCCTGAGGCTC +
Preference number: 4 (lower is better)
Translates to: RTEEGLKRNAGVWILPVCGLGAV*AASLRL
Trigger: GAGCCTCAGGGAAGCTGCTCAGACAGCCCCCAGCCC...ACAAACAGGTAAAATCCACACACCAGCATTTCTTTTGAGTCCCTCTTCTGTCCG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000182539.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR GCA 90 bp GGACAGAAGAGGGACTCAAAAGAAATGCTGGTGTGTGGATTTTACCTGTTTGTAGGGGCGCGTGCCGGGTaGCCTCGCAACACAGCAGCT +
Preference number: 4 (lower is better)
Translates to: GQKRDSKEMLVCGFYLFVGARAG*PRNTAA
Trigger: AGCTGCTGTGTTGCGAGGGCACCCGGCACGCGCCCC...TACAAACAGGTAAAATCCACACACCAGCATTTCTTTTGAGTCCCTCTTCTGTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR GCA 90 bp AAGCTAAGCAGCAAGCAAAGCAACAGTGTATGGGTTCTTGCTCTGGCCAAAGCCCGGCTGCCCCAATGCTaGCTGTGGCGATCATGGATG +
Preference number: 4 (lower is better)
Translates to: KLSSKQSNSVWVLALAKARLPQC*LWRSWM
Trigger: CATCCATGATCGCCACAGGCAGCATTGGGGCAGCCG...GGCTTTGGCCAGAGCAAGAACCCATACACTGTTGCTTTGCTTGCTGCTTAGCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR CCA 90 bp CGGGCTTCAGATATAGCATGGATTGTTCTAGAGGCAGGGAGGGGGTGGCAGGGGTGTGGCGATCATGGATaGAGGATACATCGCAAAGGT +
Preference number: 4 (lower is better)
Translates to: RASDIAWIVLEAGRGWQGCGDHG*RIHRKG
Trigger: ACCTTTGCGATGTATCCTCCATCCATGATCGCCACA...CCCCTGCCACCCCCTCCCTGCCTCTAGAACAATCCATGCTATATCTGAAGCCCG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR CCA 90 bp TCTGACCATCATGGCCCAGGACAGCCAAGCTGGTTGAGTGGGAAGGAAGAGGAGTGCCTGTGGCGATCATaGATGGAGGATACATCGCAA +
Preference number: 4 (lower is better)
Translates to: SDHHGPGQPSWLSGKEEECLWRS*MEDTSQ
Trigger: TTGCGATGTATCCTCCATCCATGATCGCCACAGGCA...CTCCTCTTCCTTCCCACTCAACCAGCTTGGCTGTCCTGGGCCATGATGGTCAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR GCA 90 bp AAGCTAAGCAGCAAGCAAAGCAACAGTGTATGGGTTCTTGCTCTGGCCAAAGCCCCTAGAAGCTGCAATTaGGCCTTTCGGGTGGGGACG +
Preference number: 4 (lower is better)
Translates to: KLSSKQSNSVWVLALAKAPRSCN*AFRVGT
Trigger: CGTCCCCACCCGAAAGGCGCAATTGCAGCTTCTAGG...GGCTTTGGCCAGAGCAAGAACCCATACACTGTTGCTTTGCTTGCTGCTTAGCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR GCA 90 bp ACCCCACAATCACAGAAGCTAAGCAGCAAGCAAAGCAACAGTGTATGGGTTCTTTCCCACTCCCGCAACTaGCATGGAGCCACAGCCTGG +
Preference number: 4 (lower is better)
Translates to: TPQSQKLSSKQSNSVWVLSHSRN*HGATAW
Trigger: CCAGGCTGTGGCTCCATGGCAGTTGCGGGAGTGGGA...AAGAACCCATACACTGTTGCTTTGCTTGCTGCTTAGCTTCTGTGATTGTGGGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR CCA 90 bp GCTAAGCAGCAAGCAAAGCAACAGTGTATGGGTTCTTGCTCTGGCCAAAGCCTATGGTTTCGCGCAGCTTaGAGGCCAGCAACAGGCAGA +
Preference number: 4 (lower is better)
Translates to: AKQQAKQQCMGSCSGQSLWFRAA*RPATGR
Trigger: TCTGCCTGTTGCTGGCCTCCAAGCTGCGCGAAACCA...TAGGCTTTGGCCAGAGCAAGAACCCATACACTGTTGCTTTGCTTGCTGCTTAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR GCA 90 bp CAGAAGAGGGACTCAAAAGAAATGCTGGTGTGTGGATTTTACCTGTTTGTATTTGGGGCGCGTGCCGGGTaGCCTCGCAACACAGCAGCT +
Preference number: 4 (lower is better)
Translates to: QKRDSKEMLVCGFYLFVFGARAG*PRNTAA
Trigger: AGCTGCTGTGTTGCGAGGGCACCCGGCACGCGCCCC...AAATACAAACAGGTAAAATCCACACACCAGCATTTCTTTTGAGTCCCTCTTCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR TCA 90 bp CGGACAGAAGAGGGACTCAAAAGAAATGCTGGTGTGTGGATTTTACCTGTTTGTCCACTTCAGTGCCTGTaGTCCCGGCCAGCAACTCTG +
Preference number: 4 (lower is better)
Translates to: RTEEGLKRNAGVWILPVCPLQCL*SRPATL
Trigger: CAGAGTTGCTGGCCGGGATCACAGGCACTGAAGTGG...ACAAACAGGTAAAATCCACACACCAGCATTTCTTTTGAGTCCCTCTTCTGTCCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000182539.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR TCA 90 bp CAGAAGAGGGACTCAAAAGAAATGCTGGTGTGTGGATTTTACCTGTTTGTATTTGGGCTGGGGGCTGTCTaGGCAGCTTCCCTGAGGCTC +
Preference number: 4 (lower is better)
Translates to: QKRDSKEMLVCGFYLFVFGLGAV*AASLRL
Trigger: GAGCCTCAGGGAAGCTGCTCAGACAGCCCCCAGCCC...AAATACAAACAGGTAAAATCCACACACCAGCATTTCTTTTGAGTCCCTCTTCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000182539.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR GCA 90 bp AAGCTAAGCAGCAAGCAAAGCAACAGTGTATGGGTTCTTGCTCTGGCCAAAGCCACGGTACCTAGAAGCTaGAATTGCGCCTTTCGGGTG +
Preference number: 4 (lower is better)
Translates to: KLSSKQSNSVWVLALAKATVPRS*NCAFRV
Trigger: CACCCGAAAGGCGCAATTGCAGCTTCTAGGTACCGT...GGCTTTGGCCAGAGCAAGAACCCATACACTGTTGCTTTGCTTGCTGCTTAGCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR GCA 90 bp GCTAAGCAGCAAGCAAAGCAACAGTGTATGGGTTCTTGCTCTGGCCAAAGCCTAACGGTACCTAGAAGCTaGAATTGCGCCTTTCGGGTG +
Preference number: 4 (lower is better)
Translates to: AKQQAKQQCMGSCSGQSLTVPRS*NCAFRV
Trigger: CACCCGAAAGGCGCAATTGCAGCTTCTAGGTACCGT...TAGGCTTTGGCCAGAGCAAGAACCCATACACTGTTGCTTTGCTTGCTGCTTAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR CCA 90 bp AGAAGAGGGACTCAAAAGAAATGCTGGTGTGTGGATTTTACCTGTTTGTATTTCCTCTGCAGGACACGCTaGTCCCCAAGCAGCCGCGGG +
Preference number: 4 (lower is better)
Translates to: RRGTQKKCWCVDFTCLYFLCRTR*SPSSRG
Trigger: CCCGCGGCTGCTTGGGGACCAGCGTGTCCTGCAGAG...GAAATACAAACAGGTAAAATCCACACACCAGCATTTCTTTTGAGTCCCTCTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR CCA 90 bp GGACAGAAGAGGGACTCAAAAGAAATGCTGGTGTGTGGATTTTACCTGTTTGTACTCCCGCAACTGCCATaGAGCCACAGCCTGGTCCGT +
Preference number: 4 (lower is better)
Translates to: GQKRDSKEMLVCGFYLFVLPQLP*SHSLVR
Trigger: ACGGACCAGGCTGTGGCTCCATGGCAGTTGCGGGAG...TACAAACAGGTAAAATCCACACACCAGCATTTCTTTTGAGTCCCTCTTCTGTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR CCA 90 bp GGACAGAAGAGGGACTCAAAAGAAATGCTGGTGTGTGGATTTTACCTGTTTGTAAAGCCTGCCGGTCACTaGGCAGAGACAGGCGGTGCA +
Preference number: 4 (lower is better)
Translates to: GQKRDSKEMLVCGFYLFVKPAGH*AETGGA
Trigger: TGCACCGCCTGTCTCTGCCCAGTGACCGGCAGGCTT...TACAAACAGGTAAAATCCACACACCAGCATTTCTTTTGAGTCCCTCTTCTGTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR TCA 90 bp AAGAGGGACTCAAAAGAAATGCTGGTGTGTGGATTTTACCTGTTTGTATTTCTCGTGGGAGTGCTGGTCTaGCTGGGCCCCTGGCTGCTA +
Preference number: 4 (lower is better)
Translates to: KRDSKEMLVCGFYLFVFLVGVLV*LGPWLL
Trigger: TAGCAGCCAGGGGCCCAGTCAGACCAGCACTCCCAC...GAGAAATACAAACAGGTAAAATCCACACACCAGCATTTCTTTTGAGTCCCTCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000182539.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR GCA 90 bp GGACTCAAAAGAAATGCTGGTGTGTGGATTTTACCTGTTTGTATTTCTCTGACCTCCTCCTCGCAGCGCTaGTCCTCACACACCTCCAGC +
Preference number: 4 (lower is better)
Translates to: GLKRNAGVWILPVCISLTSSSQR*SSHTSS
Trigger: GCTGGAGGTGTGTGAGGAGCAGCGCTGCGAGGAGGA...GGTCAGAGAAATACAAACAGGTAAAATCCACACACCAGCATTTCTTTTGAGTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR GCA 90 bp AAATGCTGGTGTGTGGATTTTACCTGTTTGTATTTCTCTGACCATCATGGCCCACGGCTGCCCCAATGCTaGCTGTGGCGATCATGGATG +
Preference number: 4 (lower is better)
Translates to: KCWCVDFTCLYFSDHHGPRLPQC*LWRSWM
Trigger: CATCCATGATCGCCACAGGCAGCATTGGGGCAGCCG...TGGGCCATGATGGTCAGAGAAATACAAACAGGTAAAATCCACACACCAGCATTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000182539.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR GCA 90 bp AGAAATGCTGGTGTGTGGATTTTACCTGTTTGTATTTCTCTGACCATCATGGCCCGGCTGCCCCAATGCTaGCTGTGGCGATCATGGATG +
Preference number: 4 (lower is better)
Translates to: RNAGVWILPVCISLTIMARLPQC*LWRSWM
Trigger: CATCCATGATCGCCACAGGCAGCATTGGGGCAGCCG...GGCCATGATGGTCAGAGAAATACAAACAGGTAAAATCCACACACCAGCATTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000182539.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR CCA 90 bp GGTACAGGCCTCACTGTACCCTCTTACAGTTGTATTCAAAGCAATAAATTAAAACTCTGCAGGACACGCTaGTCCCCAAGCAGCCGCGGG +
Preference number: 4 (lower is better)
Translates to: GTGLTVPSYSCIQSNKLKLCRTR*SPSSRG
Trigger: CCCGCGGCTGCTTGGGGACCAGCGTGTCCTGCAGAG...TTTTAATTTATTGCTTTGAATACAACTGTAAGAGGGTACAGTGAGGCCTGTACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR CCA 90 bp AAGCTAAGCAGCAAGCAAAGCAACAGTGTATGGGTTCTTGCTCTGGCCAAAGCCTGCCTGTGGCGATCATaGATGGAGGATACATCGCAA +
Preference number: 4 (lower is better)
Translates to: KLSSKQSNSVWVLALAKACLWRS*MEDTSQ
Trigger: TTGCGATGTATCCTCCATCCATGATCGCCACAGGCA...GGCTTTGGCCAGAGCAAGAACCCATACACTGTTGCTTTGCTTGCTGCTTAGCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR CCA 90 bp GCTAAGCAGCAAGCAAAGCAACAGTGTATGGGTTCTTGCTCTGGCCAAAGCCTATGCCTGTGGCGATCATaGATGGAGGATACATCGCAA +
Preference number: 4 (lower is better)
Translates to: AKQQAKQQCMGSCSGQSLCLWRS*MEDTSQ
Trigger: TTGCGATGTATCCTCCATCCATGATCGCCACAGGCA...TAGGCTTTGGCCAGAGCAAGAACCCATACACTGTTGCTTTGCTTGCTGCTTAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR TCA 90 bp GGTACAGGCCTCACTGTACCCTCTTACAGTTGTATTCAAAGCAATAAATTAAAAGTGGGAGTGCTGGTCTaGCTGGGCCCCTGGCTGCTA +
Preference number: 4 (lower is better)
Translates to: GTGLTVPSYSCIQSNKLKVGVLV*LGPWLL
Trigger: TAGCAGCCAGGGGCCCAGTCAGACCAGCACTCCCAC...TTTTAATTTATTGCTTTGAATACAACTGTAAGAGGGTACAGTGAGGCCTGTACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR GCA 90 bp GGACAGAAGAGGGACTCAAAAGAAATGCTGGTGTGTGGATTTTACCTGTTTGTAAGGCGGAGTAAACTCTaGAGGACACGCTGGTCCCCA +
Preference number: 4 (lower is better)
Translates to: GQKRDSKEMLVCGFYLFVRRSKL*RTRWSP
Trigger: TGGGGACCAGCGTGTCCTGCAGAGTTTACTCCGCCT...TACAAACAGGTAAAATCCACACACCAGCATTTCTTTTGAGTCCCTCTTCTGTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR GCA 90 bp CAGAAGAGGGACTCAAAAGAAATGCTGGTGTGTGGATTTTACCTGTTTGTATTTTCCTCCTCGCAGCGCTaGTCCTCACACACCTCCAGC +
Preference number: 4 (lower is better)
Translates to: QKRDSKEMLVCGFYLFVFSSSQR*SSHTSS
Trigger: GCTGGAGGTGTGTGAGGAGCAGCGCTGCGAGGAGGA...AAATACAAACAGGTAAAATCCACACACCAGCATTTCTTTTGAGTCCCTCTTCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR GCA 90 bp ACCCCACAATCACAGAAGCTAAGCAGCAAGCAAAGCAACAGTGTATGGGTTCTTACGGTACCTAGAAGCTaGAATTGCGCCTTTCGGGTG +
Preference number: 4 (lower is better)
Translates to: TPQSQKLSSKQSNSVWVLTVPRS*NCAFRV
Trigger: CACCCGAAAGGCGCAATTGCAGCTTCTAGGTACCGT...AAGAACCCATACACTGTTGCTTTGCTTGCTGCTTAGCTTCTGTGATTGTGGGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR GCA 90 bp AAGAGGGACTCAAAAGAAATGCTGGTGTGTGGATTTTACCTGTTTGTATTTCTCTCCCACTCCCGCAACTaGCATGGAGCCACAGCCTGG +
Preference number: 4 (lower is better)
Translates to: KRDSKEMLVCGFYLFVFLSHSRN*HGATAW
Trigger: CCAGGCTGTGGCTCCATGGCAGTTGCGGGAGTGGGA...GAGAAATACAAACAGGTAAAATCCACACACCAGCATTTCTTTTGAGTCCCTCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR GCA 90 bp GGACAGAAGAGGGACTCAAAAGAAATGCTGGTGTGTGGATTTTACCTGTTTGTAGGCAGAGACAGGCGGTaGAGAATCAAGGCCAGGAAG +
Preference number: 4 (lower is better)
Translates to: GQKRDSKEMLVCGFYLFVGRDRR*RIKARK
Trigger: CTTCCTGGCCTTGATTCTGCACCGCCTGTCTCTGCC...TACAAACAGGTAAAATCCACACACCAGCATTTCTTTTGAGTCCCTCTTCTGTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR GCA 90 bp AGAAGAGGGACTCAAAAGAAATGCTGGTGTGTGGATTTTACCTGTTTGTATTTCGCACGGCTGCCCCAATaGTGCCTGTGGCGATCATGG +
Preference number: 4 (lower is better)
Translates to: RRGTQKKCWCVDFTCLYFARLPQ*CLWRSW
Trigger: CCATGATCGCCACAGGCAGCATTGGGGCAGCCGTGC...GAAATACAAACAGGTAAAATCCACACACCAGCATTTCTTTTGAGTCCCTCTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000182539.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR CCA 90 bp AAATGCTGGTGTGTGGATTTTACCTGTTTGTATTTCTCTGACCATCATGGCCCATGGTTTCGCGCAGCTTaGAGGCCAGCAACAGGCAGA +
Preference number: 4 (lower is better)
Translates to: KCWCVDFTCLYFSDHHGPWFRAA*RPATGR
Trigger: TCTGCCTGTTGCTGGCCTCCAAGCTGCGCGAAACCA...TGGGCCATGATGGTCAGAGAAATACAAACAGGTAAAATCCACACACCAGCATTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR CCA 90 bp AAGAGGGACTCAAAAGAAATGCTGGTGTGTGGATTTTACCTGTTTGTATTTCTCCTCCCGCAACTGCCATaGAGCCACAGCCTGGTCCGT +
Preference number: 4 (lower is better)
Translates to: KRDSKEMLVCGFYLFVFLLPQLP*SHSLVR
Trigger: ACGGACCAGGCTGTGGCTCCATGGCAGTTGCGGGAG...GAGAAATACAAACAGGTAAAATCCACACACCAGCATTTCTTTTGAGTCCCTCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR CCA 90 bp AAGAGGGACTCAAAAGAAATGCTGGTGTGTGGATTTTACCTGTTTGTATTTCTCAAGCCTGCCGGTCACTaGGCAGAGACAGGCGGTGCA +
Preference number: 4 (lower is better)
Translates to: KRDSKEMLVCGFYLFVFLKPAGH*AETGGA
Trigger: TGCACCGCCTGTCTCTGCCCAGTGACCGGCAGGCTT...GAGAAATACAAACAGGTAAAATCCACACACCAGCATTTCTTTTGAGTCCCTCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR GCA 90 bp GGACTCAAAAGAAATGCTGGTGTGTGGATTTTACCTGTTTGTATTTCTCTGACCGGCAGAGACAGGCGGTaGAGAATCAAGGCCAGGAAG +
Preference number: 4 (lower is better)
Translates to: GLKRNAGVWILPVCISLTGRDRR*RIKARK
Trigger: CTTCCTGGCCTTGATTCTGCACCGCCTGTCTCTGCC...GGTCAGAGAAATACAAACAGGTAAAATCCACACACCAGCATTTCTTTTGAGTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR GCA 90 bp AGAAGAGGGACTCAAAAGAAATGCTGGTGTGTGGATTTTACCTGTTTGTATTTCAGGCGGAGTAAACTCTaGAGGACACGCTGGTCCCCA +
Preference number: 4 (lower is better)
Translates to: RRGTQKKCWCVDFTCLYFRRSKL*RTRWSP
Trigger: TGGGGACCAGCGTGTCCTGCAGAGTTTACTCCGCCT...GAAATACAAACAGGTAAAATCCACACACCAGCATTTCTTTTGAGTCCCTCTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR GCA 90 bp GGACAGAAGAGGGACTCAAAAGAAATGCTGGTGTGTGGATTTTACCTGTTTGTATTTTTGACCAAAGCCTaGCGGTCACTGGGCAGAGAC +
Preference number: 4 (lower is better)
Translates to: GQKRDSKEMLVCGFYLFVFLTKA*RSLGRD
Trigger: GTCTCTGCCCAGTGACCGGCAGGCTTTGGTCAAAAA...TACAAACAGGTAAAATCCACACACCAGCATTTCTTTTGAGTCCCTCTTCTGTCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR GCA 90 bp GGTACAGGCCTCACTGTACCCTCTTACAGTTGTATTCAAAGCAATAAATTAAAAAGGCGGAGTAAACTCTaGAGGACACGCTGGTCCCCA +
Preference number: 4 (lower is better)
Translates to: GTGLTVPSYSCIQSNKLKRRSKL*RTRWSP
Trigger: TGGGGACCAGCGTGTCCTGCAGAGTTTACTCCGCCT...TTTTAATTTATTGCTTTGAATACAACTGTAAGAGGGTACAGTGAGGCCTGTACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR GCA 90 bp GGACTCAAAAGAAATGCTGGTGTGTGGATTTTACCTGTTTGTATTTCTCTGACCACGGTACCTAGAAGCTaGAATTGCGCCTTTCGGGTG +
Preference number: 4 (lower is better)
Translates to: GLKRNAGVWILPVCISLTTVPRS*NCAFRV
Trigger: CACCCGAAAGGCGCAATTGCAGCTTCTAGGTACCGT...GGTCAGAGAAATACAAACAGGTAAAATCCACACACCAGCATTTCTTTTGAGTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR GCA 90 bp AGAAGAGGGACTCAAAAGAAATGCTGGTGTGTGGATTTTACCTGTTTGTATTTCACGGTACCTAGAAGCTaGAATTGCGCCTTTCGGGTG +
Preference number: 4 (lower is better)
Translates to: RRGTQKKCWCVDFTCLYFTVPRS*NCAFRV
Trigger: CACCCGAAAGGCGCAATTGCAGCTTCTAGGTACCGT...GAAATACAAACAGGTAAAATCCACACACCAGCATTTCTTTTGAGTCCCTCTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR CCA 90 bp GGACAGAAGAGGGACTCAAAAGAAATGCTGGTGTGTGGATTTTACCTGTTTGTATGTGGCGATCATGGATaGAGGATACATCGCAAAGGT +
Preference number: 4 (lower is better)
Translates to: GQKRDSKEMLVCGFYLFVCGDHG*RIHRKG
Trigger: ACCTTTGCGATGTATCCTCCATCCATGATCGCCACA...TACAAACAGGTAAAATCCACACACCAGCATTTCTTTTGAGTCCCTCTTCTGTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR CCA 90 bp AAGAGGGACTCAAAAGAAATGCTGGTGTGTGGATTTTACCTGTTTGTATTTCTCTGTGGCGATCATGGATaGAGGATACATCGCAAAGGT +
Preference number: 4 (lower is better)
Translates to: KRDSKEMLVCGFYLFVFLCGDHG*RIHRKG
Trigger: ACCTTTGCGATGTATCCTCCATCCATGATCGCCACA...GAGAAATACAAACAGGTAAAATCCACACACCAGCATTTCTTTTGAGTCCCTCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR CCA 90 bp GGTACAGGCCTCACTGTACCCTCTTACAGTTGTATTCAAAGCAATAAATTAAAATGCCTGTGGCGATCATaGATGGAGGATACATCGCAA +
Preference number: 4 (lower is better)
Translates to: GTGLTVPSYSCIQSNKLKCLWRS*MEDTSQ
Trigger: TTGCGATGTATCCTCCATCCATGATCGCCACAGGCA...TTTTAATTTATTGCTTTGAATACAACTGTAAGAGGGTACAGTGAGGCCTGTACC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR CAA 90 bp GGGGAAGAAGGGAGGGAAAGAGCAACCGCCAGGGTTACCACCACTTGTGGGGTAGTGGTTTCGCGCAGCTaGGAGGCCAGCAACAGGCAG +
Preference number: 5 (lower is better)
Translates to: GEEGRERATARVTTTCGVVVSRS*EASNRQ
Trigger: CTGCCTGTTGCTGGCCTCCAAGCTGCGCGAAACCAC...TACCCCACAAGTGGTGGTAACCCTGGCGGTTGCTCTTTCCCTCCCTTCTTCCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR CAA 90 bp AGTGGGAAGGAAGAGGAGCTGACTGGCCATGAAGACGCCCCTCATGACCATGCAGTGGTTTCGCGCAGCTaGGAGGCCAGCAACAGGCAG +
Preference number: 5 (lower is better)
Translates to: SGKEEELTGHEDAPHDHAVVSRS*EASNRQ
Trigger: CTGCCTGTTGCTGGCCTCCAAGCTGCGCGAAACCAC...TGCATGGTCATGAGGGGCGTCTTCATGGCCAGTCAGCTCCTCTTCCTTCCCACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR CAA 90 bp AAATGCTGGTGTGTGGATTTTACCTGTTTGTATTTCTCTGACCATCATGGCCCAGTGGTTTCGCGCAGCTaGGAGGCCAGCAACAGGCAG +
Preference number: 5 (lower is better)
Translates to: KCWCVDFTCLYFSDHHGPVVSRS*EASNRQ
Trigger: CTGCCTGTTGCTGGCCTCCAAGCTGCGCGAAACCAC...TGGGCCATGATGGTCAGAGAAATACAAACAGGTAAAATCCACACACCAGCATTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR CAA 90 bp CAGAAGAGGGACTCAAAAGAAATGCTGGTGTGTGGATTTTACCTGTTTGTATTTGTGGTTTCGCGCAGCTaGGAGGCCAGCAACAGGCAG +
Preference number: 5 (lower is better)
Translates to: QKRDSKEMLVCGFYLFVFVVSRS*EASNRQ
Trigger: CTGCCTGTTGCTGGCCTCCAAGCTGCGCGAAACCAC...AAATACAAACAGGTAAAATCCACACACCAGCATTTCTTTTGAGTCCCTCTTCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS-3UTR CAA 90 bp GGTACAGGCCTCACTGTACCCTCTTACAGTTGTATTCAAAGCAATAAATTAAAAGTGGTTTCGCGCAGCTaGGAGGCCAGCAACAGGCAG +
Preference number: 5 (lower is better)
Translates to: GTGLTVPSYSCIQSNKLKVVSRS*EASNRQ
Trigger: CTGCCTGTTGCTGGCCTCCAAGCTGCGCGAAACCAC...TTTTAATTTATTGCTTTGAATACAACTGTAAGAGGGTACAGTGAGGCCTGTACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS GCA 72 bp ACCAAAGCCTGCCGGTCACTGGGCAGAGACAGGCGGTaGAGAATCAAGGCCAGGAAGTCGTGCGCAATCACG +
Preference number: 6 (lower is better)
Translates to: TKACRSLGRDRR*RIKARKSCAIT
Trigger: CGTGATTGCGCACGACTTCCTGGCCTTGATTCTGCACCGCCTGTCTCTGCCCAGTGACCGGCAGGCTTTGGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182129.8
ENSMUST00000182209.8
ENSMUST00000182506.8
ENSMUST00000182846.3
ENSMUST00000182848.8
ENSMUST00000182874.3
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS GCA 72 bp AGCAGGCGCCTAGGCCTAGCACGGCTGCCCCAATGCTaGCTGTGGCGATCATGGATGGAGGATACATCGCAA +
Preference number: 6 (lower is better)
Translates to: SRRLGLARLPQC*LWRSWMEDTSQ
Trigger: TTGCGATGTATCCTCCATCCATGATCGCCACAGGCAGCATTGGGGCAGCCGTGCTAGGCCTAGGCGCCTGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182209.8
ENSMUST00000182506.8
ENSMUST00000182848.8
ENSMUST00000183044.8
ENSMUST00000183177.8
CDS CCA 72 bp CCCCAGGACCAGCACCTCCCACTCCCGCAACTGCCATaGAGCCACAGCCTGGTCCGTATAGATGCAAAGCTT +
Preference number: 6 (lower is better)
Translates to: PQDQHLPLPQLP*SHSLVRIDAKL
Trigger: AAGCTTTGCATCTATACGGACCAGGCTGTGGCTCCATGGCAGTTGCGGGAGTGGGAGGTGCTGGTCCTGGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182129.8
ENSMUST00000182209.8
ENSMUST00000182506.8
ENSMUST00000182846.3
ENSMUST00000182848.8
ENSMUST00000183044.8
ENSMUST00000183158.2
ENSMUST00000183177.8
CDS CAA 72 bp AGCTTCTCAATAGTCAGGGGCGTGGTTTCGCGCAGCTaGGAGGCCAGCAACAGGCAGACGGTACCTAGAAGC +
Preference number: 6 (lower is better)
Translates to: SFSIVRGVVSRS*EASNRQTVPRS
Trigger: GCTTCTAGGTACCGTCTGCCTGTTGCTGGCCTCCAAGCTGCGCGAAACCACGCCCCTGACTATTGAGAAGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000037333.17
ENSMUST00000171031.8
ENSMUST00000182129.8
ENSMUST00000182209.8
ENSMUST00000182506.8
ENSMUST00000182846.3
ENSMUST00000182848.8
ENSMUST00000183044.8
ENSMUST00000183158.2
ENSMUST00000183177.8
CDS GCA 72 bp CTCCACTGCCATCATTCTCTCTCTTCTGGAAGGTCTTaGTGGTCCATAGCTTCCAGAGCATTTCAGGGCGAG +
Preference number: 6 (lower is better)
Translates to: LHCHHSLSSGRS*WSIASRAFQGE
Trigger: CTCGCCCTGAAATGCTCTGGAAGCTATGGACCAGCAAGACCTTCCAGAAGAGAGAGAATGATGGCAGTGGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183210.2
CDS CAA 72 bp ACTCCACTGCCATCATTCTCTCTCTTCTGGAAGGTCTaGCTGGTCCATAGCTTCCAGAGCATTTCAGGGCGA +
Preference number: 6 (lower is better)
Translates to: TPLPSFSLFWKV*LVHSFQSISGR
Trigger: TCGCCCTGAAATGCTCTGGAAGCTATGGACCAGCAAGACCTTCCAGAAGAGAGAGAATGATGGCAGTGGAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183210.2