Pregenerated sensors for CCNC (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028252Ensembl transcript IDs: ENSMUST00000065928.11, ENSMUST00000102997.8, ENSMUST00000108240.3, ENSMUST00000120679.8
Found 81 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CAGGGTGTTTTAAGATTGGCTGTAGCTAGAGTTCTGACTTCCATTTaGACCCTGCTCACCTTCACAGTAACTGTGACAATAGGAGATTGC | + |
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Preference number: 1 (lower is better) Translates to: QGVLRLAVARVLTSI*TLLTFTVTVTIGDC Trigger: GCAATCTCCTATTGTCACAGTTACTGTGAAGGTGAGCAGGGTCCAAATGGAAGTCAGAACTCTAGCTACAGCCAATCTTAAAACACCCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065928.11 |
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| 3UTR CCA 90 bp | ATAGTTAACGGCTGGGATAAGCAAATCAATTACCAAGCATCCAAGTaGAGTTCGGGGAGAGCCTGTTTGTTCCTCTGTTTGTTTGTTACT | + |
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Preference number: 1 (lower is better) Translates to: IVNGWDKQINYQASK*SSGRACLFLCLFVT Trigger: AGTAACAAACAAACAGAGGAACAAACAGGCTCTCCCCGAACTCCACTTGGATGCTTGGTAATTGATTTGCTTATCCCAGCCGTTAACTAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065928.11 ENSMUST00000102997.8 |
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| 3UTR GCA 90 bp | TCATTTGCATCTGCTTCCAATGAAGACATTACTCAAACTGTCCAATaGTTTACTTCCAAGTGGTCCACTACGGGATTCTTCAGGGTGTTT | + |
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Preference number: 1 (lower is better) Translates to: SFASASNEDITQTVQ*FTSKWSTTGFFRVF Trigger: AAACACCCTGAAGAATCCCGTAGTGGACCACTTGGAAGTAAAGCATTGGACAGTTTGAGTAATGTCTTCATTGGAAGCAGATGCAAATGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065928.11 |
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| 3UTR GCA 90 bp | GAGGCTAGAGCATACACACATGGAGATCTATTTCACGGCTTTGTCTaGTTTTGCAAAGTCTTAATCATCCACAAGAGCATTTGCAAAGAA | + |
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Preference number: 1 (lower is better) Translates to: EARAYTHGDLFHGFV*FCKVLIIHKSICKE Trigger: TTCTTTGCAAATGCTCTTGTGGATGATTAAGACTTTGCAAAAGCAGACAAAGCCGTGAAATAGATCTCCATGTGTGTATGCTCTAGCCTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065928.11 ENSMUST00000102997.8 |
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| 3UTR TCA 90 bp | TGGCCACCCTACAGTAGTCTAGCCAAAACAAAAAGAATCTCGGTGTaGTCAGCCTTCATATTCAATTATCAATTTACAGAAATACAAAGG | + |
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Preference number: 1 (lower is better) Translates to: WPPYSSLAKTKRISV*SAFIFNYQFTEIQR Trigger: CCTTTGTATTTCTGTAAATTGATAATTGAATATGAAGGCTGATCACACCGAGATTCTTTTTGTTTTGGCTAGACTACTGTAGGGTGGCCA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000065928.11 ENSMUST00000102997.8 |
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| 3UTR CAA 90 bp | TACTTCCAAGTGGTCCACTACGGGATTCTTCAGGGTGTTTTAAGATaGGCTGTAGCTAGAGTTCTGACTTCCATTTGGACCCTGCTCACC | + |
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Preference number: 2 (lower is better) Translates to: YFQVVHYGILQGVLR*AVARVLTSIWTLLT Trigger: GGTGAGCAGGGTCCAAATGGAAGTCAGAACTCTAGCTACAGCCAATCTTAAAACACCCTGAAGAATCCCGTAGTGGACCACTTGGAAGTA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065928.11 |
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| 3UTR-3UTR TCA 90 bp | TGCACATTTATAGCATATCTGCATTCAGACAAGCCACATAGTAACTGTTCAGCCAGTGGCTGGTGGCTATaGGACTGGACAGTGTGCCTA | + |
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Preference number: 2 (lower is better) Translates to: CTFIAYLHSDKPHSNCSASGWWL*DWTVCL Trigger: TAGGCACACTGTCCAGTCTCATAGCCACCAGCCACT...GGCTGAACAGTTACTATGTGGCTTGTCTGAATGCAGATATGCTATAAATGTGCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065928.11 ENSMUST00000102997.8 |
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| 3UTR-3UTR TCA 90 bp | TCAGGTTTGAAGTCAATATGGAGATGCAGCCAAGCATTTTGTTCTACTCCTAAGGAAGCCATCCAAATCTaGCCGTCTGGTGTTCTCTTG | + |
|
Preference number: 2 (lower is better) Translates to: SGLKSIWRCSQAFCSTPKEAIQI*PSGVLL Trigger: CAAGAGAACACCAGACGGTCAGATTTGGATGGCTTC...CTTAGGAGTAGAACAAAATGCTTGGCTGCATCTCCATATTGACTTCAAACCTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120679.8 |
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| 3UTR-3UTR TCA 90 bp | TCAGGTTTGAAGTCAATATGGAGATGCAGCCAAGCATTTTGTTCTACTCCTAAGGTGAAGCTCTGCAGATaGACCCAGTGGACTTCAAAG | + |
|
Preference number: 2 (lower is better) Translates to: SGLKSIWRCSQAFCSTPKVKLCR*TQWTSK Trigger: CTTTGAAGTCCACTGGGTTCATCTGCAGAGCTTCAC...CTTAGGAGTAGAACAAAATGCTTGGCTGCATCTCCATATTGACTTCAAACCTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120679.8 |
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| 3UTR-3UTR GCA 90 bp | AATGAGGACAGCAACAGCCACTATGTGCTGATTAATACAAGAGATGGCCACCCTGAATACAGAATGCTCTaGAATGTTCAGGGAATTGAG | + |
|
Preference number: 2 (lower is better) Translates to: NEDSNSHYVLINTRDGHPEYRML*NVQGIE Trigger: CTCAATTCCCTGAACATTGCAGAGCATTCTGTATTC...AGGGTGGCCATCTCTTGTATTAATCAGCACATAGTGGCTGTTGCTGTCCTCATT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065928.11 ENSMUST00000102997.8 |
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| 3UTR-3UTR GCA 90 bp | AATGAGGACAGCAACAGCCACTATGTGCTGATTAATACAAGAGATGGCCACCCTTTTCACGGCTTTGTCTaGTTTTGCAAAGTCTTAATC | + |
|
Preference number: 2 (lower is better) Translates to: NEDSNSHYVLINTRDGHPFHGFV*FCKVLI Trigger: GATTAAGACTTTGCAAAAGCAGACAAAGCCGTGAAA...AGGGTGGCCATCTCTTGTATTAATCAGCACATAGTGGCTGTTGCTGTCCTCATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000065928.11 ENSMUST00000102997.8 |
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| 3UTR-3UTR CCA 90 bp | GAAACCCAACATGTTTGCACATTTATAGCATATCTGCATTCAGACAAGCCACATGTTCTGACTTCCATTTaGACCCTGCTCACCTTCACA | + |
|
Preference number: 2 (lower is better) Translates to: ETQHVCTFIAYLHSDKPHVLTSI*TLLTFT Trigger: TGTGAAGGTGAGCAGGGTCCAAATGGAAGTCAGAAC...ATGTGGCTTGTCTGAATGCAGATATGCTATAAATGTGCAAACATGTTGGGTTTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065928.11 |
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| 3UTR-3UTR CCA 90 bp | TGCACATTTATAGCATATCTGCATTCAGACAAGCCACATAGTAACTGTTCAGCCAAAACCCTCGCTAAATaGCATGCTAAAGATGCTCAC | + |
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Preference number: 2 (lower is better) Translates to: CTFIAYLHSDKPHSNCSAKTLAK*HAKDAH Trigger: GTGAGCATCTTTAGCATGCCATTTAGCGAGGGTTTT...GGCTGAACAGTTACTATGTGGCTTGTCTGAATGCAGATATGCTATAAATGTGCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065928.11 ENSMUST00000102997.8 |
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| 3UTR-3UTR TCA 90 bp | TTGAAGTCAATATGGAGATGCAGCCAAGCATTTTGTTCTACTCCTAAGGGTGTGTACATTGGAAATTCTTaGGCAAGGAAAAATACCTGG | + |
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Preference number: 2 (lower is better) Translates to: LKSIWRCSQAFCSTPKGVYIGNS*ARKNTW Trigger: CCAGGTATTTTTCCTTGCTCAAGAATTTCCAATGTA...CACACCCTTAGGAGTAGAACAAAATGCTTGGCTGCATCTCCATATTGACTTCAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000120679.8 |
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| 3UTR-3UTR CCA 90 bp | AAGTCAATATGGAGATGCAGCCAAGCATTTTGTTCTACTCCTAAGGGTGTGACTGCAAGGAAAAATACCTaGATCAATCAACATACCATG | + |
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Preference number: 2 (lower is better) Translates to: KSIWRCSQAFCSTPKGVTARKNT*INQHTM Trigger: CATGGTATGTTGATTGATCCAGGTATTTTTCCTTGC...AGTCACACCCTTAGGAGTAGAACAAAATGCTTGGCTGCATCTCCATATTGACTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000120679.8 |
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| 3UTR-3UTR GCA 90 bp | TTAACACGCACAAAGATTCTCAGAGAACCTAAGTCAAACTTAGCAACAGGAATTACTCAAACTGTCCAATaGTTTACTTCCAAGTGGTCC | + |
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Preference number: 2 (lower is better) Translates to: LTRTKILREPKSNLATGITQTVQ*FTSKWS Trigger: GGACCACTTGGAAGTAAAGCATTGGACAGTTTGAGT...AATTCCTGTTGCTAAGTTTGACTTAGGTTCTCTGAGAATCTTTGTGCGTGTTAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065928.11 ENSMUST00000102997.8 |
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| 3UTR-3UTR GCA 90 bp | ACTGATTCTGAAACAGTACTTGTCATAAATGAGGACAGCAACAGCCACTATGTGTTTCACGGCTTTGTCTaGTTTTGCAAAGTCTTAATC | + |
|
Preference number: 2 (lower is better) Translates to: TDSETVLVINEDSNSHYVFHGFV*FCKVLI Trigger: GATTAAGACTTTGCAAAAGCAGACAAAGCCGTGAAA...CACATAGTGGCTGTTGCTGTCCTCATTTATGACAAGTACTGTTTCAGAATCAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065928.11 ENSMUST00000102997.8 |
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| 3UTR CAA 90 bp | GTACCAGTGTCTCTTTACAGTTGTCTAAACTTATTTCTTTCAGGTTaGAAGTCAATATGGAGATGCAGCCAAGCATTTTGTTCTACTCCT | + |
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Preference number: 2 (lower is better) Translates to: VPVSLYSCLNLFLSG*KSIWRCSQAFCSTP Trigger: AGGAGTAGAACAAAATGCTTGGCTGCATCTCCATATTGACTTCAAACCTGAAAGAAATAAGTTTAGACAACTGTAAAGAGACACTGGTAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120679.8 |
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| 3UTR-3UTR GCA 90 bp | TCTGAAACAGTACTTGTCATAAATGAGGACAGCAACAGCCACTATGTGCTGATTAGTCAATTCCCAATATaGTTGACAGAAACAAGCTAT | + |
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Preference number: 2 (lower is better) Translates to: SETVLVINEDSNSHYVLISQFPI*LTETSY Trigger: ATAGCTTGTTTCTGTCAAGCATATTGGGAATTGACT...AATCAGCACATAGTGGCTGTTGCTGTCCTCATTTATGACAAGTACTGTTTCAGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065928.11 ENSMUST00000102997.8 |
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| 3UTR-3UTR GCA 90 bp | CATTGGAAATTCTTGAGCAAGGAAAAATACCTGGATCAATCAACATACCATGTACAAAGCTTGATTGAATaGCTTGACATTTTCTTCCAG | + |
|
Preference number: 2 (lower is better) Translates to: HWKFLSKEKYLDQSTYHVQSLIE*LDIFFQ Trigger: CTGGAAGAAAATGTCAAGGCATTCAATCAAGCTTTG...TACATGGTATGTTGATTGATCCAGGTATTTTTCCTTGCTCAAGAATTTCCAATG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000120679.8 |
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| 3UTR TCA 72 bp | TACCAATGTAAGTCTCTTTTTCAGCACACCTGCATCTaGTTCCCCATAGGAAGCAGAACCTTCCTCACAATC | + |
|
Preference number: 3 (lower is better) Translates to: YQCKSLFQHTCI*FPIGSRTFLTI Trigger: GATTGTGAGGAAGGTTCTGCTTCCTATGGGGAATCAGATGCAGGTGTGCTGAAAAAGAGACTTACATTGGTA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000065928.11 ENSMUST00000102997.8 |
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| 3UTR CCA 72 bp | TTAAGATTGGCTGTAGCTAGAGTTCTGACTTCCATTTaGACCCTGCTCACCTTCACAGTAACTGTGACAATA | + |
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Preference number: 3 (lower is better) Translates to: LRLAVARVLTSI*TLLTFTVTVTI Trigger: TATTGTCACAGTTACTGTGAAGGTGAGCAGGGTCCAAATGGAAGTCAGAACTCTAGCTACAGCCAATCTTAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065928.11 |
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| 3UTR-3UTR CAA 90 bp | TGCACATTTATAGCATATCTGCATTCAGACAAGCCACATAGTAACTGTTCAGCCCAGGGTGTTTTAAGATaGGCTGTAGCTAGAGTTCTG | + |
|
Preference number: 3 (lower is better) Translates to: CTFIAYLHSDKPHSNCSAQGVLR*AVARVL Trigger: CAGAACTCTAGCTACAGCCAATCTTAAAACACCCTG...GGCTGAACAGTTACTATGTGGCTTGTCTGAATGCAGATATGCTATAAATGTGCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065928.11 |
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| 3UTR-3UTR CAA 90 bp | GTCATAAATGAGGACAGCAACAGCCACTATGTGCTGATTAATACAAGAGATGGCTGTTCCTCTGTTTGTTaGTTACTTAGCCTTATACGG | + |
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Preference number: 3 (lower is better) Translates to: VINEDSNSHYVLINTRDGCSSVC*LLSLIR Trigger: CCGTATAAGGCTAAGTAACAAACAAACAGAGGAACA...GCCATCTCTTGTATTAATCAGCACATAGTGGCTGTTGCTGTCCTCATTTATGAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065928.11 ENSMUST00000102997.8 |
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| 3UTR-3UTR CAA 90 bp | GTCATAAATGAGGACAGCAACAGCCACTATGTGCTGATTAATACAAGAGATGGCCAATTCCCAATATGCTaGACAGAAACAAGCTATTCA | + |
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Preference number: 3 (lower is better) Translates to: VINEDSNSHYVLINTRDGQFPIC*TETSYS Trigger: TGAATAGCTTGTTTCTGTCAAGCATATTGGGAATTG...GCCATCTCTTGTATTAATCAGCACATAGTGGCTGTTGCTGTCCTCATTTATGAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065928.11 ENSMUST00000102997.8 |
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| 3UTR-3UTR CAA 90 bp | TGCACATTTATAGCATATCTGCATTCAGACAAGCCACATAGTAACTGTTCAGCCTGTTCCTCTGTTTGTTaGTTACTTAGCCTTATACGG | + |
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Preference number: 3 (lower is better) Translates to: CTFIAYLHSDKPHSNCSACSSVC*LLSLIR Trigger: CCGTATAAGGCTAAGTAACAAACAAACAGAGGAACA...GGCTGAACAGTTACTATGTGGCTTGTCTGAATGCAGATATGCTATAAATGTGCA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065928.11 ENSMUST00000102997.8 |
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| 3UTR-3UTR CAA 90 bp | CTTTGTCTGCTTTTGCAAAGTCTTAATCATCCACAAGAGCATTTGCAAAGAAAATCGGGGAGAGCCTGTTaGTTCCTCTGTTTGTTTGTT | + |
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Preference number: 3 (lower is better) Translates to: LCLLLQSLNHPQEHLQRKSGRAC*FLCLFV Trigger: AACAAACAAACAGAGGAACAAACAGGCTCTCCCCGA...TTTTCTTTGCAAATGCTCTTGTGGATGATTAAGACTTTGCAAAAGCAGACAAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000065928.11 ENSMUST00000102997.8 |
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| 3UTR-3UTR CAA 90 bp | AAGTCAATATGGAGATGCAGCCAAGCATTTTGTTCTACTCCTAAGGGTGTGACTGATTATCTCCAAAGCTaGATTGAATGCCTTGACATT | + |
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Preference number: 3 (lower is better) Translates to: KSIWRCSQAFCSTPKGVTDYLQS*IECLDI Trigger: AATGTCAAGGCATTCAATCAAGCTTTGGAGATAATC...AGTCACACCCTTAGGAGTAGAACAAAATGCTTGGCTGCATCTCCATATTGACTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120679.8 |
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| 3UTR GCA 72 bp | AACTTATTTCTTTCAGGTTTGAAGTCAATATGGAGATaGAGCCAAGCATTTTGTTCTACTCCTAAGGGTGTG | + |
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Preference number: 3 (lower is better) Translates to: NLFLSGLKSIWR*SQAFCSTPKGV Trigger: CACACCCTTAGGAGTAGAACAAAATGCTTGGCTGCATCTCCATATTGACTTCAAACCTGAAAGAAATAAGTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120679.8 |
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| 3UTR-3UTR CAA 90 bp | GAAACCCAACATGTTTGCACATTTATAGCATATCTGCATTCAGACAAGCCACATCAATTCCCAATATGCTaGACAGAAACAAGCTATTCA | + |
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Preference number: 3 (lower is better) Translates to: ETQHVCTFIAYLHSDKPHQFPIC*TETSYS Trigger: TGAATAGCTTGTTTCTGTCAAGCATATTGGGAATTG...ATGTGGCTTGTCTGAATGCAGATATGCTATAAATGTGCAAACATGTTGGGTTTC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065928.11 ENSMUST00000102997.8 |
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| 3UTR TCA 72 bp | GACAGAAACAAGCTATTCATTTGCATCTGCTTCCAATaGAGACATTACTCAAACTGTCCAATGCTTTACTTC | + |
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Preference number: 3 (lower is better) Translates to: DRNKLFICICFQ*RHYSNCPMLYF Trigger: GAAGTAAAGCATTGGACAGTTTGAGTAATGTCTTCATTGGAAGCAGATGCAAATGAATAGCTTGTTTCTGTC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065928.11 ENSMUST00000102997.8 |
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| 3UTR CCA 72 bp | TGTCTAAACTTATTTCTTTCAGGTTTGAAGTCAATATaGAGATGCAGCCAAGCATTTTGTTCTACTCCTAAG | + |
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Preference number: 3 (lower is better) Translates to: CLNLFLSGLKSI*RCSQAFCSTPK Trigger: CTTAGGAGTAGAACAAAATGCTTGGCTGCATCTCCATATTGACTTCAAACCTGAAAGAAATAAGTTTAGACA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120679.8 |
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| CDS-3UTR CCA 90 bp | GCATCCAAGTGGAGTTCGGGGAGAGCCTGTTTGTTCCTCTGTTTGTTTGTTACTAGCAGCACGTCTTCCTaGCCCATGTCCTGCACATAC | + |
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Preference number: 4 (lower is better) Translates to: ASKWSSGRACLFLCLFVTSSTSS*PMSCTY Trigger: GTATGTGCAGGACATGGGCCAGGAAGACGTGCTGCT...AGTAACAAACAAACAGAGGAACAAACAGGCTCTCCCCGAACTCCACTTGGATGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065928.11 ENSMUST00000102997.8 |
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| CDS-3UTR CCA 90 bp | GCTGTAGCTAGAGTTCTGACTTCCATTTGGACCCTGCTCACCTTCACAGTAACTCAGGGAGCTTCTGTTTaGAGGTGGTTTTGGTTTCGG | + |
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Preference number: 4 (lower is better) Translates to: AVARVLTSIWTLLTFTVTQGASV*RWFWFR Trigger: CCGAAACCAAAACCACCTCCAAACAGAAGCTCCCTG...AGTTACTGTGAAGGTGAGCAGGGTCCAAATGGAAGTCAGAACTCTAGCTACAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065928.11 |
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| CDS-3UTR CCA 90 bp | TCAGGTTTGAAGTCAATATGGAGATGCAGCCAAGCATTTTGTTCTACTCCTAAGAGCAGCACGTCTTCCTaGCCCATGTCCTGCACATAC | + |
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Preference number: 4 (lower is better) Translates to: SGLKSIWRCSQAFCSTPKSSTSS*PMSCTY Trigger: GTATGTGCAGGACATGGGCCAGGAAGACGTGCTGCT...CTTAGGAGTAGAACAAAATGCTTGGCTGCATCTCCATATTGACTTCAAACCTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120679.8 |
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| CDS-3UTR CCA 90 bp | GCATCCAAGTGGAGTTCGGGGAGAGCCTGTTTGTTCCTCTGTTTGTTTGTTACTGCTTCTGTTTGGAGGTaGTTTTGGTTTCGGCATCTT | + |
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Preference number: 4 (lower is better) Translates to: ASKWSSGRACLFLCLFVTASVWR*FWFRHL Trigger: AAGATGCCGAAACCAAAACCACCTCCAAACAGAAGC...AGTAACAAACAAACAGAGGAACAAACAGGCTCTCCCCGAACTCCACTTGGATGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065928.11 |
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| 3UTR CAA 72 bp | GTGGTCCACTACGGGATTCTTCAGGGTGTTTTAAGATaGGCTGTAGCTAGAGTTCTGACTTCCATTTGGACC | + |
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Preference number: 4 (lower is better) Translates to: VVHYGILQGVLR*AVARVLTSIWT Trigger: GGTCCAAATGGAAGTCAGAACTCTAGCTACAGCCAATCTTAAAACACCCTGAAGAATCCCGTAGTGGACCAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065928.11 |
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| CDS-3UTR GCA 90 bp | GTCATAAATGAGGACAGCAACAGCCACTATGTGCTGATTAATACAAGAGATGGCATTCACTATCCTCCATaGAAGGGGAAGCAGCACGTC | + |
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Preference number: 4 (lower is better) Translates to: VINEDSNSHYVLINTRDGIHYPP*KGKQHV Trigger: GACGTGCTGCTTCCCCTTGCATGGAGGATAGTGAAT...GCCATCTCTTGTATTAATCAGCACATAGTGGCTGTTGCTGTCCTCATTTATGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065928.11 ENSMUST00000102997.8 |
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| CDS-3UTR CCA 90 bp | TTTTTATTCTTCTGTAGCTTGAGGCCCTCATACATAACAAGCAGTCTGGAAGTTAGCAGCACGTCTTCCTaGCCCATGTCCTGCACATAC | + |
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Preference number: 4 (lower is better) Translates to: FLFFCSLRPSYITSSLEVSSTSS*PMSCTY Trigger: GTATGTGCAGGACATGGGCCAGGAAGACGTGCTGCT...AACTTCCAGACTGCTTGTTATGTATGAGGGCCTCAAGCTACAGAAGAATAAAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000108240.3 |
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| CDS-3UTR GCA 90 bp | TCAGGTTTGAAGTCAATATGGAGATGCAGCCAAGCATTTTGTTCTACTCCTAAGATTCACTATCCTCCATaGAAGGGGAAGCAGCACGTC | + |
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Preference number: 4 (lower is better) Translates to: SGLKSIWRCSQAFCSTPKIHYPP*KGKQHV Trigger: GACGTGCTGCTTCCCCTTGCATGGAGGATAGTGAAT...CTTAGGAGTAGAACAAAATGCTTGGCTGCATCTCCATATTGACTTCAAACCTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120679.8 |
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| CDS-3UTR GCA 90 bp | CCAAGCATCCAAGTGGAGTTCGGGGAGAGCCTGTTTGTTCCTCTGTTTGTTTGTCTTACTAAGAATAGTTaGCATCTCTTTTCTCTCATC | + |
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Preference number: 4 (lower is better) Translates to: PSIQVEFGESLFVPLFVCLTKNS*HLFSLI Trigger: GATGAGAGAAAAGAGATGGCAACTATTCTTAGTAAG...ACAAACAAACAGAGGAACAAACAGGCTCTCCCCGAACTCCACTTGGATGCTTGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000065928.11 ENSMUST00000102997.8 |
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| CDS-3UTR CCA 90 bp | ATCAATTTACAGAAATACAAAGGAGAAAAACCCTCGCTAAATGGCATGCTAAAGAGCAGCACGTCTTCCTaGCCCATGTCCTGCACATAC | + |
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Preference number: 4 (lower is better) Translates to: INLQKYKGEKPSLNGMLKSSTSS*PMSCTY Trigger: GTATGTGCAGGACATGGGCCAGGAAGACGTGCTGCT...CTTTAGCATGCCATTTAGCGAGGGTTTTTCTCCTTTGTATTTCTGTAAATTGAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000065928.11 ENSMUST00000102997.8 |
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| CDS-3UTR CCA 90 bp | TGCACATTTATAGCATATCTGCATTCAGACAAGCCACATAGTAACTGTTCAGCCGTTCTGACTTCCATTTaGACCCTGCTCACCTTCACT | + |
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Preference number: 4 (lower is better) Translates to: CTFIAYLHSDKPHSNCSAVLTSI*TLLTFT Trigger: AGTGAAGGTGAGCAGGGTCCAAATGGAAGTCAGAAC...GGCTGAACAGTTACTATGTGGCTTGTCTGAATGCAGATATGCTATAAATGTGCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102997.8 |
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| CDS-3UTR GCA 90 bp | TTAACACGCACAAAGATTCTCAGAGAACCTAAGTCAAACTTAGCAACAGGAATTATTCACTATCCTCCATaGAAGGGGAAGCAGCACGTC | + |
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Preference number: 4 (lower is better) Translates to: LTRTKILREPKSNLATGIIHYPP*KGKQHV Trigger: GACGTGCTGCTTCCCCTTGCATGGAGGATAGTGAAT...AATTCCTGTTGCTAAGTTTGACTTAGGTTCTCTGAGAATCTTTGTGCGTGTTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065928.11 ENSMUST00000102997.8 |
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| CDS-3UTR GCA 90 bp | GGTTTTATGTTTTTATTCTTCTGTAGCTTGAGGCCCTCATACATAACAAGCAGTATTCACTATCCTCCATaGAAGGGGAAGCAGCACGTC | + |
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Preference number: 4 (lower is better) Translates to: GFMFLFFCSLRPSYITSSIHYPP*KGKQHV Trigger: GACGTGCTGCTTCCCCTTGCATGGAGGATAGTGAAT...ACTGCTTGTTATGTATGAGGGCCTCAAGCTACAGAAGAATAAAAACATAAAACC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000108240.3 |
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| CDS-3UTR CCA 90 bp | GAGAGGTTAACCCTGAAATGTCTGTGTATGGCTATAGGTTCCTTTAGAGCCTTAGTTTGGAGGTGGTTTTaGTTTCGGCATCTTACTAAG | + |
|
Preference number: 4 (lower is better) Translates to: ERLTLKCLCMAIGSFRALVWRWF*FRHLTK Trigger: CTTAGTAAGATGCCGAAACCAAAACCACCTCCAAAC...TAAGGCTCTAAAGGAACCTATAGCCATACACAGACATTTCAGGGTTAACCTCTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065928.11 ENSMUST00000102997.8 |
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| CDS-3UTR CCA 90 bp | AAGTCAATATGGAGATGCAGCCAAGCATTTTGTTCTACTCCTAAGGGTGTGACTGTTTGGAGGTGGTTTTaGTTTCGGCATCTTACTAAG | + |
|
Preference number: 4 (lower is better) Translates to: KSIWRCSQAFCSTPKGVTVWRWF*FRHLTK Trigger: CTTAGTAAGATGCCGAAACCAAAACCACCTCCAAAC...AGTCACACCCTTAGGAGTAGAACAAAATGCTTGGCTGCATCTCCATATTGACTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120679.8 |
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| CDS-3UTR CCA 90 bp | GGTTTTATGTTTTTATTCTTCTGTAGCTTGAGGCCCTCATACATAACAAGCAGTCAGGGAGCTTCTGTTTaGAGGTGGTTTTGGTTTCGG | + |
|
Preference number: 4 (lower is better) Translates to: GFMFLFFCSLRPSYITSSQGASV*RWFWFR Trigger: CCGAAACCAAAACCACCTCCAAACAGAAGCTCCCTG...ACTGCTTGTTATGTATGAGGGCCTCAAGCTACAGAAGAATAAAAACATAAAACC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000108240.3 |
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| CDS-3UTR GCA 90 bp | TGCACATTTATAGCATATCTGCATTCAGACAAGCCACATAGTAACTGTTCAGCCATCCACAGAAAGTTCTaGAAACCACTGTCTAGCATC | + |
|
Preference number: 4 (lower is better) Translates to: CTFIAYLHSDKPHSNCSAIHRKF*KPLSSI Trigger: GATGCTAGACAGTGGTTTGCAGAACTTTCTGTGGAT...GGCTGAACAGTTACTATGTGGCTTGTCTGAATGCAGATATGCTATAAATGTGCA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065928.11 ENSMUST00000102997.8 |
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| CDS-3UTR CCA 90 bp | GAGAGGTTAACCCTGAAATGTCTGTGTATGGCTATAGGTTCCTTTAGAGCCTTAAACTTTAGGTCCTTTTaGCGCTCTTTCAACAGATCT | + |
|
Preference number: 4 (lower is better) Translates to: ERLTLKCLCMAIGSFRALNFRSF*RSFNRS Trigger: AGATCTGTTGAAAGAGCGCCAAAAGGACCTAAAGTT...TAAGGCTCTAAAGGAACCTATAGCCATACACAGACATTTCAGGGTTAACCTCTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065928.11 ENSMUST00000102997.8 |
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| CDS-3UTR CCA 90 bp | GTCATAAATGAGGACAGCAACAGCCACTATGTGCTGATTAATACAAGAGATGGCCAAATTCCTCTACTTTaGATGCCAGAAACACACATG | + |
|
Preference number: 4 (lower is better) Translates to: VINEDSNSHYVLINTRDGQIPLL*MPETHM Trigger: CATGTGTGTTTCTGGCATCCAAAGTAGAGGAATTTG...GCCATCTCTTGTATTAATCAGCACATAGTGGCTGTTGCTGTCCTCATTTATGAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065928.11 ENSMUST00000102997.8 |
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| CDS-3UTR CCA 90 bp | ATGTTTTTATTCTTCTGTAGCTTGAGGCCCTCATACATAACAAGCAGTCTGGAAGCTTCTGTTTGGAGGTaGTTTTGGTTTCGGCATCTT | + |
|
Preference number: 4 (lower is better) Translates to: MFLFFCSLRPSYITSSLEASVWR*FWFRHL Trigger: AAGATGCCGAAACCAAAACCACCTCCAAACAGAAGC...TTCCAGACTGCTTGTTATGTATGAGGGCCTCAAGCTACAGAAGAATAAAAACAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000108240.3 |
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| CDS-3UTR CCA 90 bp | TTAACACGCACAAAGATTCTCAGAGAACCTAAGTCAAACTTAGCAACAGGAATTCTCACCTTCACTGTTTaGAGGTGGTTTTGGTTTCGG | + |
|
Preference number: 4 (lower is better) Translates to: LTRTKILREPKSNLATGILTFTV*RWFWFR Trigger: CCGAAACCAAAACCACCTCCAAACAGTGAAGGTGAG...AATTCCTGTTGCTAAGTTTGACTTAGGTTCTCTGAGAATCTTTGTGCGTGTTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102997.8 |
||
| CDS-3UTR CCA 90 bp | TCAGGTTTGAAGTCAATATGGAGATGCAGCCAAGCATTTTGTTCTACTCCTAAGAACTTTAGGTCCTTTTaGCGCTCTTTCAACAGATCT | + |
|
Preference number: 4 (lower is better) Translates to: SGLKSIWRCSQAFCSTPKNFRSF*RSFNRS Trigger: AGATCTGTTGAAAGAGCGCCAAAAGGACCTAAAGTT...CTTAGGAGTAGAACAAAATGCTTGGCTGCATCTCCATATTGACTTCAAACCTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120679.8 |
||
| CDS-3UTR CCA 90 bp | TTTTTATTCTTCTGTAGCTTGAGGCCCTCATACATAACAAGCAGTCTGGAAGTTGTTTGGAGGTGGTTTTaGTTTCGGCATCTTACTAAG | + |
|
Preference number: 4 (lower is better) Translates to: FLFFCSLRPSYITSSLEVVWRWF*FRHLTK Trigger: CTTAGTAAGATGCCGAAACCAAAACCACCTCCAAAC...AACTTCCAGACTGCTTGTTATGTATGAGGGCCTCAAGCTACAGAAGAATAAAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000108240.3 |
||
| CDS-3UTR CCA 90 bp | GAAACCCAACATGTTTGCACATTTATAGCATATCTGCATTCAGACAAGCCACATTTCACTGTTTGGAGGTaGTTTTGGTTTCGGCATCTT | + |
|
Preference number: 4 (lower is better) Translates to: ETQHVCTFIAYLHSDKPHFTVWR*FWFRHL Trigger: AAGATGCCGAAACCAAAACCACCTCCAAACAGTGAA...ATGTGGCTTGTCTGAATGCAGATATGCTATAAATGTGCAAACATGTTGGGTTTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102997.8 |
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| 3UTR CAA 72 bp | CACACATGGAGATCTATTTCACGGCTTTGTCTGCTTTaGCAAAGTCTTAATCATCCACAAGAGCATTTGCAA | + |
|
Preference number: 4 (lower is better) Translates to: HTWRSISRLCLL*QSLNHPQEHLQ Trigger: TTGCAAATGCTCTTGTGGATGATTAAGACTTTGCAAAAGCAGACAAAGCCGTGAAATAGATCTCCATGTGTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065928.11 ENSMUST00000102997.8 |
||
| CDS-3UTR GCA 90 bp | GTCATAAATGAGGACAGCAACAGCCACTATGTGCTGATTAATACAAGAGATGGCCTTACTAAGAATAGTTaGCATCTCTTTTCTCTCATC | + |
|
Preference number: 4 (lower is better) Translates to: VINEDSNSHYVLINTRDGLTKNS*HLFSLI Trigger: GATGAGAGAAAAGAGATGGCAACTATTCTTAGTAAG...GCCATCTCTTGTATTAATCAGCACATAGTGGCTGTTGCTGTCCTCATTTATGAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065928.11 ENSMUST00000102997.8 |
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| CDS-3UTR GCA 90 bp | AAGCTGAAAGTACCAGTAACTGTGACAATAGGAGATTGCCTTATCTTGTCCAGCCTTACTAAGAATAGTTaGCATCTCTTTTCTCTCATC | + |
|
Preference number: 4 (lower is better) Translates to: KLKVPVTVTIGDCLILSSLTKNS*HLFSLI Trigger: GATGAGAGAAAAGAGATGGCAACTATTCTTAGTAAG...GCTGGACAAGATAAGGCAATCTCCTATTGTCACAGTTACTGGTACTTTCAGCTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108240.3 |
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| CDS-3UTR CCA 90 bp | TTTTTATTCTTCTGTAGCTTGAGGCCCTCATACATAACAAGCAGTCTGGAAGTTAACTTTAGGTCCTTTTaGCGCTCTTTCAACAGATCT | + |
|
Preference number: 4 (lower is better) Translates to: FLFFCSLRPSYITSSLEVNFRSF*RSFNRS Trigger: AGATCTGTTGAAAGAGCGCCAAAAGGACCTAAAGTT...AACTTCCAGACTGCTTGTTATGTATGAGGGCCTCAAGCTACAGAAGAATAAAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000108240.3 |
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| CDS-3UTR CCA 90 bp | CTTTGTCTGCTTTTGCAAAGTCTTAATCATCCACAAGAGCATTTGCAAAGAAAAGTTTGGAGGTGGTTTTaGTTTCGGCATCTTACTAAG | + |
|
Preference number: 4 (lower is better) Translates to: LCLLLQSLNHPQEHLQRKVWRWF*FRHLTK Trigger: CTTAGTAAGATGCCGAAACCAAAACCACCTCCAAAC...TTTTCTTTGCAAATGCTCTTGTGGATGATTAAGACTTTGCAAAAGCAGACAAAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000065928.11 ENSMUST00000102997.8 |
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| 3UTR CAA 72 bp | TCAGCTGTATGCTTAATAACTGATTATCTCCAAAGCTaGATTGAATGCCTTGACATTTTCTTCCAGTGGATG | + |
|
Preference number: 4 (lower is better) Translates to: SAVCLITDYLQS*IECLDIFFQWM Trigger: CATCCACTGGAAGAAAATGTCAAGGCATTCAATCAAGCTTTGGAGATAATCAGTTATTAAGCATACAGCTGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120679.8 |
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| CDS-3UTR CCA 90 bp | CTTTGTCTGCTTTTGCAAAGTCTTAATCATCCACAAGAGCATTTGCAAAGAAAAAACTTTAGGTCCTTTTaGCGCTCTTTCAACAGATCT | + |
|
Preference number: 4 (lower is better) Translates to: LCLLLQSLNHPQEHLQRKNFRSF*RSFNRS Trigger: AGATCTGTTGAAAGAGCGCCAAAAGGACCTAAAGTT...TTTTCTTTGCAAATGCTCTTGTGGATGATTAAGACTTTGCAAAAGCAGACAAAG 37% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000065928.11 ENSMUST00000102997.8 |
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| 3UTR CAA 72 bp | CCACTTATAGCTGTTAGTACCAGTGTCTCTTTACAGTaGTCTAAACTTATTTCTTTCAGGTTTGAAGTCAAT | + |
|
Preference number: 4 (lower is better) Translates to: PLIAVSTSVSLQ*SKLISFRFEVN Trigger: ATTGACTTCAAACCTGAAAGAAATAAGTTTAGACAACTGTAAAGAGACACTGGTACTAACAGCTATAAGTGG 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120679.8 |
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| CDS-3UTR GCA 90 bp | CATTGGAAATTCTTGAGCAAGGAAAAATACCTGGATCAATCAACATACCATGTACTTACTAAGAATAGTTaGCATCTCTTTTCTCTCATC | + |
|
Preference number: 4 (lower is better) Translates to: HWKFLSKEKYLDQSTYHVLTKNS*HLFSLI Trigger: GATGAGAGAAAAGAGATGGCAACTATTCTTAGTAAG...TACATGGTATGTTGATTGATCCAGGTATTTTTCCTTGCTCAAGAATTTCCAATG 34% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000120679.8 |
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| CDS-3UTR CAA 90 bp | GCATCCAAGTGGAGTTCGGGGAGAGCCTGTTTGTTCCTCTGTTTGTTTGTTACTGCTCACCTTCACTGTTaGGAGGTGGTTTTGGTTTCG | + |
|
Preference number: 5 (lower is better) Translates to: ASKWSSGRACLFLCLFVTAHLHC*EVVLVS Trigger: CGAAACCAAAACCACCTCCAAACAGTGAAGGTGAGC...AGTAACAAACAAACAGAGGAACAAACAGGCTCTCCCCGAACTCCACTTGGATGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102997.8 |
||
| CDS-3UTR CAA 90 bp | AAGCTGAAAGTACCAGTAACTGTGACAATAGGAGATTGCCTTATCTTGTCCAGCTCAGGGAGCTTCTGTTaGGAGGTGGTTTTGGTTTCG | + |
|
Preference number: 5 (lower is better) Translates to: KLKVPVTVTIGDCLILSSSGSFC*EVVLVS Trigger: CGAAACCAAAACCACCTCCAAACAGAAGCTCCCTGA...GCTGGACAAGATAAGGCAATCTCCTATTGTCACAGTTACTGGTACTTTCAGCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108240.3 |
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| CDS-3UTR CAA 90 bp | GAGAGGTTAACCCTGAAATGTCTGTGTATGGCTATAGGTTCCTTTAGAGCCTTATCTAGCATCTTTCTGTaGTACGACACAGGCTACATG | + |
|
Preference number: 5 (lower is better) Translates to: ERLTLKCLCMAIGSFRALSSIFL*YDTGYM Trigger: CATGTAGCCTGTGTCGTACAACAGAAAGATGCTAGA...TAAGGCTCTAAAGGAACCTATAGCCATACACAGACATTTCAGGGTTAACCTCTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065928.11 ENSMUST00000102997.8 |
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| CDS-3UTR CAA 90 bp | TTAACACGCACAAAGATTCTCAGAGAACCTAAGTCAAACTTAGCAACAGGAATTAGTTCTGACTTCCATTaGGACCCTGCTCACCTTCAC | + |
|
Preference number: 5 (lower is better) Translates to: LTRTKILREPKSNLATGISSDFH*DPAHLH Trigger: GTGAAGGTGAGCAGGGTCCAAATGGAAGTCAGAACT...AATTCCTGTTGCTAAGTTTGACTTAGGTTCTCTGAGAATCTTTGTGCGTGTTAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102997.8 |
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| CDS-3UTR CAA 90 bp | TACGGGATTCTTCAGGGTGTTTTAAGATTGGCTGTAGCTAGAGTTCTGACTTCCCTCTTTCAACAGATCTaGTTTATCCAAAATCCACTG | + |
|
Preference number: 5 (lower is better) Translates to: YGILQGVLRLAVARVLTSLFQQI*FIQNPL Trigger: CAGTGGATTTTGGATAAACAAGATCTGTTGAAAGAG...GGAAGTCAGAACTCTAGCTACAGCCAATCTTAAAACACCCTGAAGAATCCCGTA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065928.11 |
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| CDS-3UTR CAA 90 bp | CTTTGTCTGCTTTTGCAAAGTCTTAATCATCCACAAGAGCATTTGCAAAGAAAATCAGGGAGCTTCTGTTaGGAGGTGGTTTTGGTTTCG | + |
|
Preference number: 5 (lower is better) Translates to: LCLLLQSLNHPQEHLQRKSGSFC*EVVLVS Trigger: CGAAACCAAAACCACCTCCAAACAGAAGCTCCCTGA...TTTTCTTTGCAAATGCTCTTGTGGATGATTAAGACTTTGCAAAAGCAGACAAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000065928.11 |
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| CDS-3UTR CAA 90 bp | GAGAGGTTAACCCTGAAATGTCTGTGTATGGCTATAGGTTCCTTTAGAGCCTTACTCTTTCAACAGATCTaGTTTATCCAAAATCCACTG | + |
|
Preference number: 5 (lower is better) Translates to: ERLTLKCLCMAIGSFRALLFQQI*FIQNPL Trigger: CAGTGGATTTTGGATAAACAAGATCTGTTGAAAGAG...TAAGGCTCTAAAGGAACCTATAGCCATACACAGACATTTCAGGGTTAACCTCTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065928.11 ENSMUST00000102997.8 |
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| CDS-3UTR CAA 90 bp | TTGAAGTCAATATGGAGATGCAGCCAAGCATTTTGTTCTACTCCTAAGGGTGTGCTCTTTCAACAGATCTaGTTTATCCAAAATCCACTG | + |
|
Preference number: 5 (lower is better) Translates to: LKSIWRCSQAFCSTPKGVLFQQI*FIQNPL Trigger: CAGTGGATTTTGGATAAACAAGATCTGTTGAAAGAG...CACACCCTTAGGAGTAGAACAAAATGCTTGGCTGCATCTCCATATTGACTTCAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120679.8 |
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| CDS CCA 90 bp | TGTAACTTCCAATACTCCTCTTCTGAGAGAAACTTTAGGTCCTTTTaGCGCTCTTTCAACAGATCTTGTTTATCCAAAATCCACTGCAAA | + |
|
Preference number: 5 (lower is better) Translates to: CNFQYSSSERNFRSF*RSFNRSCLSKIHCK Trigger: TTTGCAGTGGATTTTGGATAAACAAGATCTGTTGAAAGAGCGCCAAAAGGACCTAAAGTTTCTCTCAGAAGAGGAGTATTGGAAGTTACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000065928.11 ENSMUST00000102997.8 ENSMUST00000108240.3 ENSMUST00000120679.8 |
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| CDS-3UTR CAA 90 bp | TTTTTATTCTTCTGTAGCTTGAGGCCCTCATACATAACAAGCAGTCTGGAAGTTCTCTTTCAACAGATCTaGTTTATCCAAAATCCACTG | + |
|
Preference number: 5 (lower is better) Translates to: FLFFCSLRPSYITSSLEVLFQQI*FIQNPL Trigger: CAGTGGATTTTGGATAAACAAGATCTGTTGAAAGAG...AACTTCCAGACTGCTTGTTATGTATGAGGGCCTCAAGCTACAGAAGAATAAAAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000108240.3 |
||
| CDS TCA 72 bp | CGACACAGGCTACATGTAGGCAAGCTAAAGCGATCATaGACGGAGGGTACAGCAGACAGAGATCCGTCCTGT | + |
|
Preference number: 6 (lower is better) Translates to: RHRLHVGKLKRS*TEGTADRDPSC Trigger: ACAGGACGGATCTCTGTCTGCTGTACCCTCCGTTCATGATCGCTTTAGCTTGCCTACATGTAGCCTGTGTCG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000065928.11 ENSMUST00000102997.8 ENSMUST00000108240.3 ENSMUST00000120679.8 |
||
| CDS CCA 72 bp | TGGACCCTGCTCACCTTCACTGTTTGGAGGTGGTTTTaGTTTCGGCATCTTACTAAGAATAGTTGCCATCTC | + |
|
Preference number: 6 (lower is better) Translates to: WTLLTFTVWRWF*FRHLTKNSCHL Trigger: GAGATGGCAACTATTCTTAGTAAGATGCCGAAACCAAAACCACCTCCAAACAGTGAAGGTGAGCAGGGTCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102997.8 |
||
| CDS CCA 72 bp | AGAGTCACTCAGGGAGCTTCTGTTTGGAGGTGGTTTTaGTTTCGGCATCTTACTAAGAATAGTTGCCATCTC | + |
|
Preference number: 6 (lower is better) Translates to: RVTQGASVWRWF*FRHLTKNSCHL Trigger: GAGATGGCAACTATTCTTAGTAAGATGCCGAAACCAAAACCACCTCCAAACAGAAGCTCCCTGAGTGACTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065928.11 ENSMUST00000108240.3 |
||
| CDS CCA 72 bp | TTAAGATTGGCTGTAGCTAGAGTTCTGACTTCCATTTaGACCCTGCTCACCTTCACTGTTTGGAGGTGGTTT | + |
|
Preference number: 6 (lower is better) Translates to: LRLAVARVLTSI*TLLTFTVWRWF Trigger: AAACCACCTCCAAACAGTGAAGGTGAGCAGGGTCCAAATGGAAGTCAGAACTCTAGCTACAGCCAATCTTAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102997.8 |
||
| CDS GCA 72 bp | TATTTCCAAAATCTTCTCCATATCCACAGAAAGTTCTaGAAACCACTGTCTAGCATCTTTCTGTTGTACGAC | + |
|
Preference number: 6 (lower is better) Translates to: YFQNLLHIHRKF*KPLSSIFLLYD Trigger: GTCGTACAACAGAAAGATGCTAGACAGTGGTTTGCAGAACTTTCTGTGGATATGGAGAAGATTTTGGAAATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000065928.11 ENSMUST00000102997.8 ENSMUST00000108240.3 ENSMUST00000120679.8 |
||
| CDS CCA 72 bp | CAATACTCCTCTTCTGAGAGAAACTTTAGGTCCTTTTaGCGCTCTTTCAACAGATCTTGTTTATCCAAAATC | + |
|
Preference number: 6 (lower is better) Translates to: QYSSSERNFRSF*RSFNRSCLSKI Trigger: GATTTTGGATAAACAAGATCTGTTGAAAGAGCGCCAAAAGGACCTAAAGTTTCTCTCAGAAGAGGAGTATTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000065928.11 ENSMUST00000102997.8 ENSMUST00000108240.3 ENSMUST00000120679.8 |
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