RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CCNB3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000051592

Ensembl transcript IDs: ENSMUST00000056725.8, ENSMUST00000115752.8

Found 92 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp ACTGCAGAGTTACTGAAGAAACGTCTTCTTTTAGGGAGCTGCTGCTaGTTCCTTAAAGGTGAGGGCTTCTTCAGGCAAGGGGCCTCGCCC +
Preference number: 5 (lower is better)
Translates to: TAELLKKRLLLGSCC*FLKGEGFFRQGASP
Trigger: GGGCGAGGCCCCTTGCCTGAAGAAGCCCTCACCTTTAAGGAAGCAGCAGCAGCTCCCTAAAAGAAGACGTTTCTTCAGTAACTCTGCAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS GCA 90 bp TGTACTGCAGAGTTACTGAAGAAACGTCTTCTTTTAGGGAGCTGCTaGTGCTTCCTTAAAGGTGAGGGCTTCTTCAGGCAAGGGGCCTCG +
Preference number: 5 (lower is better)
Translates to: CTAELLKKRLLLGSC*CFLKGEGFFRQGAS
Trigger: CGAGGCCCCTTGCCTGAAGAAGCCCTCACCTTTAAGGAAGCAGCAGCAGCTCCCTAAAAGAAGACGTTTCTTCAGTAACTCTGCAGTACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS GCA 90 bp TCTTGTACTGCAGAGTTACTGAAGAAACGTCTTCTTTTAGGGAGCTaGTGCTGCTTCCTTAAAGGTGAGGGCTTCTTCAGGCAAGGGGCC +
Preference number: 5 (lower is better)
Translates to: SCTAELLKKRLLLGS*CCFLKGEGFFRQGA
Trigger: GGCCCCTTGCCTGAAGAAGCCCTCACCTTTAAGGAAGCAGCAGCAGCTCCCTAAAAGAAGACGTTTCTTCAGTAACTCTGCAGTACAAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS GCA 90 bp CTTCTGTTTGGACAATTCCCCAGGACTGATATGCTTCTTTGGCAGTaGAGATGGCCACTGGGAAGGGGGATCTTTCTCAGTGGTAGACAT +
Preference number: 5 (lower is better)
Translates to: LLFGQFPRTDMLLWQ*RWPLGRGIFLSGRH
Trigger: ATGTCTACCACTGAGAAAGATCCCCCTTCCCAGTGGCCATCTGCACTGCCAAAGAAGCATATCAGTCCTGGGGAATTGTCCAAACAGAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS GCA 90 bp AGTGGGTTTCTCAAATGGAACCCTGTCTCTTTAGTAATAGCCTGCTaGATCTCTAACTTTAAAGGCGTATGGGTGGAGGCTGGCTCCTCC +
Preference number: 5 (lower is better)
Translates to: SGFLKWNPVSLVIAC*ISNFKGVWVEAGSS
Trigger: GGAGGAGCCAGCCTCCACCCATACGCCTTTAAAGTTAGAGATGCAGCAGGCTATTACTAAAGAGACAGGGTTCCATTTGAGAAACCCACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS CCA 90 bp TTTGGACAATTCCCCAGGACTGATATGCTTCTTTGGCAGTGCAGATaGCCACTGGGAAGGGGGATCTTTCTCAGTGGTAGACATCTTAAA +
Preference number: 5 (lower is better)
Translates to: FGQFPRTDMLLWQCR*PLGRGIFLSGRHLK
Trigger: TTTAAGATGTCTACCACTGAGAAAGATCCCCCTTCCCAGTGGCCATCTGCACTGCCAAAGAAGCATATCAGTCCTGGGGAATTGTCCAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS CCA 90 bp GTCTCTTTAGTAATAGCCTGCTGCATCTCTAACTTTAAAGGCGTATaGGTGGAGGCTGGCTCCTCCCTGCTGAGCTGTTTCTTAAAAGCT +
Preference number: 5 (lower is better)
Translates to: VSLVIACCISNFKGV*VEAGSSLLSCFLKA
Trigger: AGCTTTTAAGAAACAGCTCAGCAGGGAGGAGCCAGCCTCCACCCATACGCCTTTAAAGTTAGAGATGCAGCAGGCTATTACTAAAGAGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS GCA 90 bp CAACACTGTGAGTCCTCCTCCATGTTATGCTTTGGTGAGACATGCTaGTTCTTCTGTTTGGACAATTCCCCAGGACTGATATGCTTCTTT +
Preference number: 5 (lower is better)
Translates to: QHCESSSMLCFGETC*FFCLDNSPGLICFF
Trigger: AAAGAAGCATATCAGTCCTGGGGAATTGTCCAAACAGAAGAAGCAGCATGTCTCACCAAAGCATAACATGGAGGAGGACTCACAGTGTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS CCA 90 bp CACCCATCTCAGTGTCAGGCTTATGATCAAAGGATAAAGAGTCCATaGGGTTTGCCTTTTTATTGCTGGAATTCTCTTCCAAGGCCAATA +
Preference number: 5 (lower is better)
Translates to: HPSQCQAYDQRIKSP*GLPFYCWNSLPRPI
Trigger: TATTGGCCTTGGAAGAGAATTCCAGCAATAAAAAGGCAAACCCCATGGACTCTTTATCCTTTGATCATAAGCCTGACACTGAGATGGGTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS CCA 90 bp ATCTCACAGATGAAGCGGGATAAGGTTAGTGTCTTCATGCTAGCATaGATGCACGAAGCATATCTACGCAGAAAATTATATGCTGTGGGA +
Preference number: 5 (lower is better)
Translates to: ISQMKRDKVSVFMLA*MHEAYLRRKLYAVG
Trigger: TCCCACAGCATATAATTTTCTGCGTAGATATGCTTCGTGCATCCATGCTAGCATGAAGACACTAACCTTATCCCGCTTCATCTGTGAGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS CCA 90 bp TGGGATCGGAAGTTCAGCAAATGGTTTAACTTCCTGACCAAGATATaGAGTTCTGCCATCTTGTACCCAGTGAAATATTCCAGTGTAGGA +
Preference number: 5 (lower is better)
Translates to: WDRKFSKWFNFLTKI*SSAILYPVKYSSVG
Trigger: TCCTACACTGGAATATTTCACTGGGTACAAGATGGCAGAACTCCATATCTTGGTCAGGAAGTTAAACCATTTGCTGAACTTCCGATCCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS TCA 90 bp ACTAGACACATATGGGTTGGAGTTCTCGACAGGATTGAATGCCTTTaGACTTGGCATGATAGCACTGGAATTGTCTGTTCTGGATTCAAA +
Preference number: 5 (lower is better)
Translates to: TRHIWVGVLDRIECL*TWHDSTGIVCSGFK
Trigger: TTTGAATCCAGAACAGACAATTCCAGTGCTATCATGCCAAGTTCAAAGGCATTCAATCCTGTCGAGAACTCCAACCCATATGTGTCTAGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS GCA 90 bp AGACATCTTAAAGAACAATGGCTTGCGAATGACTGTTTCTTGTACTaGAGAGTTACTGAAGAAACGTCTTCTTTTAGGGAGCTGCTGCTG +
Preference number: 5 (lower is better)
Translates to: RHLKEQWLANDCFLY*RVTEETSSFRELLL
Trigger: CAGCAGCAGCTCCCTAAAAGAAGACGTTTCTTCAGTAACTCTGCAGTACAAGAAACAGTCATTCGCAAGCCATTGTTCTTTAAGATGTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS TCA 90 bp GCATTAGTTACATCTTCAAACACTGATCTCCTCTTTACTGCGCCTTaGGTTGAAGATGAAGATGAAGATGCTGCATGGTTACTCTTTCCA +
Preference number: 5 (lower is better)
Translates to: ALVTSSNTDLLFTAP*VEDEDEDAAWLLFP
Trigger: TGGAAAGAGTAACCATGCAGCATCTTCATCTTCATCTTCAACTCAAGGCGCAGTAAAGAGGAGATCAGTGTTTGAAGATGTAACTAATGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS GCA 90 bp TTCAATGTATCTTCATCAGCAGAACTGAAAGGAGAAAATAGGTCCTaGGAGAAGAAGTTCTTGTCATCATTTGAAGCCACCGATTCCTTC +
Preference number: 5 (lower is better)
Translates to: FNVSSSAELKGENRS*EKKFLSSFEATDSF
Trigger: GAAGGAATCGGTGGCTTCAAATGATGACAAGAACTTCTTCTCGCAGGACCTATTTTCTCCTTTCAGTTCTGCTGATGAAGATACATTGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS GCA 90 bp CATGCTAGCATGGATGCACGAAGCATATCTACGCAGAAAATTATATaGTGTGGGAATATTGATGTCAAAGTTGAGAGTTTGCAGGATGCT +
Preference number: 5 (lower is better)
Translates to: HASMDARSISTQKII*CGNIDVKVESLQDA
Trigger: AGCATCCTGCAAACTCTCAACTTTGACATCAATATTCCCACAGCATATAATTTTCTGCGTAGATATGCTTCGTGCATCCATGCTAGCATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS CCA 90 bp ATTAGTGCCTTTTCCCTGAGGGTCAGGATTATTTTTAGAAGAGGATaGCTTCTTTGTATGGGTTGCTTCATTGGCACTATGTTTCCCTTT +
Preference number: 5 (lower is better)
Translates to: ISAFSLRVRIIFRRG*LLCMGCFIGTMFPF
Trigger: AAAGGGAAACATAGTGCCAATGAAGCAACCCATACAAAGAAGCCATCCTCTTCTAAAAATAATCCTGACCCTCAGGGAAAAGGCACTAAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS TCA 90 bp TTCTCTTGTAACACCTGTGGCTTCTTCAAGATGCTTGCATCTTCTTaGGTATTATATTTCTCTTCCAGTGATGGCTCCTGTAACAAAGAC +
Preference number: 5 (lower is better)
Translates to: FSCNTCGFFKMLASS*VLYFSSSDGSCNKD
Trigger: GTCTTTGTTACAGGAGCCATCACTGGAAGAGAAATATAATACTCAAGAAGATGCAAGCATCTTGAAGAAGCCACAGGTGTTACAAGAGAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS GCA 90 bp AGGGTCAGGATTATTTTTAGAAGAGGATGGCTTCTTTGTATGGGTTaGTTCATTGGCACTATGTTTCCCTTTAAAAGTAACTGGCTCTGT +
Preference number: 5 (lower is better)
Translates to: RVRIIFRRGWLLCMG*FIGTMFPFKSNWLC
Trigger: ACAGAGCCAGTTACTTTTAAAGGGAAACATAGTGCCAATGAAGCAACCCATACAAAGAAGCCATCCTCTTCTAAAAATAATCCTGACCCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS TCA 90 bp GTCATTTCCTGCCACTCTGACTGTGCTTGCTGTAAGGTTATTGTGTaGGTAGTACTCTTTCTTTTCAGTAAAGATGTATTTTGTTCCCTA +
Preference number: 5 (lower is better)
Translates to: VISCHSDCACCKVIV*VVLFLFSKDVFCSL
Trigger: TAGGGAACAAAATACATCTTTACTGAAAAGAAAGAGTACTACTCACACAATAACCTTACAGCAAGCACAGTCAGAGTGGCAGGAAATGAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS TCA 90 bp TGGCAATGGATTCTGAAGGAACTCAGGTATAGGTTCCTTCCTATGTaGTCCAGGCTTTATAGAAAACAAATTTCTGTCTTCATCTGTCAT +
Preference number: 5 (lower is better)
Translates to: WQWILKELRYRFLPM*SRLYRKQISVFICH
Trigger: ATGACAGATGAAGACAGAAATTTGTTTTCTATAAAGCCTGGATCACATAGGAAGGAACCTATACCTGAGTTCCTTCAGAATCCATTGCCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS CCA 90 bp CATACAGGGTATCTATGTTGTACTCTTCATCAGTTAATACCATTCTaGCTATTTCACCCATCTCAGTGTCAGGCTTATGATCAAAGGATA +
Preference number: 5 (lower is better)
Translates to: HTGYLCCTLHQLIPF*LFHPSQCQAYDQRI
Trigger: TATCCTTTGATCATAAGCCTGACACTGAGATGGGTGAAATAGCCAGAATGGTATTAACTGATGAAGAGTACAACATAGATACCCTGTATG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS CCA 90 bp AATTCAAAAGATTCTCTAGATCTTGCTTGCTCAAAGGAGGGATTTTaGCGACTTCAAAGTAGGTCTCTTCAGAATACTTCTCAAACACAT +
Preference number: 5 (lower is better)
Translates to: NSKDSLDLACSKEGF*RLQSRSLQNTSQTH
Trigger: ATGTGTTTGAGAAGTATTCTGAAGAGACCTACTTTGAAGTCGCCAAAATCCCTCCTTTGAGCAAGCAAGATCTAGAGAATCTTTTGAATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS GCA 90 bp CTTTGTTATTTGTATTCTCTTGTAACACCTGTGGCTTCTTCAAGATaGTTGCATCTTCTTGAGTATTATATTTCTCTTCCAGTGATGGCT +
Preference number: 5 (lower is better)
Translates to: LCYLYSLVTPVASSR*LHLLEYYISLPVMA
Trigger: AGCCATCACTGGAAGAGAAATATAATACTCAAGAAGATGCAAGCATCTTGAAGAAGCCACAGGTGTTACAAGAGAATACAAATAACAAAG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS GCA 90 bp AGAAAATTATATGCTGTGGGAATATTGATGTCAAAGTTGAGAGTTTaGAGGATGCTGCTTTCCAAAGATACCATATCACTCTTTTCATAC +
Preference number: 5 (lower is better)
Translates to: RKLYAVGILMSKLRV*RMLLSKDTISLFSY
Trigger: GTATGAAAAGAGTGATATGGTATCTTTGGAAAGCAGCATCCTGCAAACTCTCAACTTTGACATCAATATTCCCACAGCATATAATTTTCT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS GCA 72 bp GGACAATTCCCCAGGACTGATATGCTTCTTTGGCAGTaGAGATGGCCACTGGGAAGGGGGATCTTTCTCAGT +
Preference number: 6 (lower is better)
Translates to: GQFPRTDMLLWQ*RWPLGRGIFLS
Trigger: ACTGAGAAAGATCCCCCTTCCCAGTGGCCATCTGCACTGCCAAAGAAGCATATCAGTCCTGGGGAATTGTCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS CCA 72 bp GTAATAGCCTGCTGCATCTCTAACTTTAAAGGCGTATaGGTGGAGGCTGGCTCCTCCCTGCTGAGCTGTTTC +
Preference number: 6 (lower is better)
Translates to: VIACCISNFKGV*VEAGSSLLSCF
Trigger: GAAACAGCTCAGCAGGGAGGAGCCAGCCTCCACCCATACGCCTTTAAAGTTAGAGATGCAGCAGGCTATTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS CCA 72 bp CTGTTTGGACAATTCCCCAGGACTGATATGCTTCTTTaGCAGTGCAGATGGCCACTGGGAAGGGGGATCTTT +
Preference number: 6 (lower is better)
Translates to: LFGQFPRTDMLL*QCRWPLGRGIF
Trigger: AAAGATCCCCCTTCCCAGTGGCCATCTGCACTGCCAAAGAAGCATATCAGTCCTGGGGAATTGTCCAAACAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS CCA 72 bp CACAGTGGACACCTCCATTTGAGGGCTATGCTTGTCTaGCAGTACAGATGGCCCATGGAAATGGGAATCTTT +
Preference number: 6 (lower is better)
Translates to: HSGHLHLRAMLV*QYRWPMEMGIF
Trigger: AAAGATTCCCATTTCCATGGGCCATCTGTACTGCCAGACAAGCATAGCCCTCAAATGGAGGTGTCCACTGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS GCA 72 bp GCAGAGTTACTGAAGAAACGTCTTCTTTTAGGGAGCTaGTGCTGCTTCCTTAAAGGTGAGGGCTTCTTCAGG +
Preference number: 6 (lower is better)
Translates to: AELLKKRLLLGS*CCFLKGEGFFR
Trigger: CCTGAAGAAGCCCTCACCTTTAAGGAAGCAGCAGCAGCTCCCTAAAAGAAGACGTTTCTTCAGTAACTCTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS CAA 90 bp TCCTCCTCCATGTTATGCTTTGGTGAGACATGCTGCTTCTTCTGTTaGGACAATTCCCCAGGACTGATATGCTTCTTTGGCAGTGCAGAT +
Preference number: 6 (lower is better)
Translates to: SSSMLCFGETCCFFC*DNSPGLICFFGSAD
Trigger: ATCTGCACTGCCAAAGAAGCATATCAGTCCTGGGGAATTGTCCAAACAGAAGAAGCAGCATGTCTCACCAAAGCATAACATGGAGGAGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS TCA 72 bp CTCAAGAGAGTCTCTACGTTATTAGATGGATTCTCCTaGAACGCTAAGGCCACCCTCTTCAGACTGGGATTC +
Preference number: 6 (lower is better)
Translates to: LKRVSTLLDGFS*NAKATLFRLGF
Trigger: GAATCCCAGTCTGAAGAGGGTGGCCTTAGCGTTTCAGGAGAATCCATCTAATAACGTAGAGACTCTCTTGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS GCA 72 bp GAGTTACTGAAGAAACGTCTTCTTTTAGGGAGCTGCTaGTGCTTCCTTAAAGGTGAGGGCTTCTTCAGGCAA +
Preference number: 6 (lower is better)
Translates to: ELLKKRLLLGSC*CFLKGEGFFRQ
Trigger: TTGCCTGAAGAAGCCCTCACCTTTAAGGAAGCAGCAGCAGCTCCCTAAAAGAAGACGTTTCTTCAGTAACTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS TCA 72 bp GTGAAGATAAGGACTCCTTCAAAGTTGCCGCTTCATTaGTGCTGGTCTCTTCCAAGGACAAGGATTTCTCAG +
Preference number: 6 (lower is better)
Translates to: VKIRTPSKLPLH*CWSLPRTRISQ
Trigger: CTGAGAAATCCTTGTCCTTGGAAGAGACCAGCATCAATGAAGCGGCAACTTTGAAGGAGTCCTTATCTTCAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS GCA 72 bp TTTGGGGTAACATCTGTTTTAGTGCTAGGTTTCTCCTaGAGAGTAGATTCGTCAGCTGTAGAGTTCTCCACC +
Preference number: 6 (lower is better)
Translates to: FGVTSVLVLGFS*RVDSSAVEFST
Trigger: GGTGGAGAACTCTACAGCTGACGAATCTACTCTGCAGGAGAAACCTAGCACTAAAACAGATGTTACCCCAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS GCA 72 bp CAGAGTAGATTCGTCAGCTGTAGAGTTCTCCACCAATaGCAATACTTCCCTCAAGAGAGTCTCTACGTTATT +
Preference number: 6 (lower is better)
Translates to: QSRFVSCRVLHQ*QYFPQESLYVI
Trigger: AATAACGTAGAGACTCTCTTGAGGGAAGTATTGGCATTGGTGGAGAACTCTACAGCTGACGAATCTACTCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS CCA 72 bp AAGAGGAATTCCTGTTCCAGAGCAACAGTCCTCTCTTaGCTTAATTCTTCAGTAGAGGAGCATCTGTCCTTA +
Preference number: 6 (lower is better)
Translates to: KRNSCSRATVLS*LNSSVEEHLSL
Trigger: TAAGGACAGATGCTCCTCTACTGAAGAATTAAGCCAAGAGAGGACTGTTGCTCTGGAACAGGAATTCCTCTT
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS CCA 72 bp AGGATAAAGAGTCCATGGGGTTTGCCTTTTTATTGCTaGAATTCTCTTCCAAGGCCAATAGTTCCTTTGGGG +
Preference number: 6 (lower is better)
Translates to: RIKSPWGLPFYC*NSLPRPIVPLG
Trigger: CCCCAAAGGAACTATTGGCCTTGGAAGAGAATTCCAGCAATAAAAAGGCAAACCCCATGGACTCTTTATCCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS CAA 72 bp ATGTTATGCTTTGGTGAGACATGCTGCTTCTTCTGTTaGGACAATTCCCCAGGACTGATATGCTTCTTTGGC +
Preference number: 6 (lower is better)
Translates to: MLCFGETCCFFC*DNSPGLICFFG
Trigger: GCCAAAGAAGCATATCAGTCCTGGGGAATTGTCCAAACAGAAGAAGCAGCATGTCTCACCAAAGCATAACAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS CAA 72 bp TGTGAAGATAAGGACTCCTTCAAAGTTGCCGCTTCATaGATGCTGGTCTCTTCCAAGGACAAGGATTTCTCA +
Preference number: 6 (lower is better)
Translates to: CEDKDSFKVAAS*MLVSSKDKDFS
Trigger: TGAGAAATCCTTGTCCTTGGAAGAGACCAGCATCAATGAAGCGGCAACTTTGAAGGAGTCCTTATCTTCACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS CAA 72 bp GAACTAGACACATATGGGTTGGAGTTCTCGACAGGATaGAATGCCTTTGAACTTGGCATGATAGCACTGGAA +
Preference number: 6 (lower is better)
Translates to: ELDTYGLEFSTG*NAFELGMIALE
Trigger: TTCCAGTGCTATCATGCCAAGTTCAAAGGCATTCAATCCTGTCGAGAACTCCAACCCATATGTGTCTAGTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS CAA 90 bp TCAGCAGAACTGAAAGGAGAAAATAGGTCCTGCGAGAAGAAGTTCTaGTCATCATTTGAAGCCACCGATTCCTTCCTATGTGCTCTTTCT +
Preference number: 6 (lower is better)
Translates to: SAELKGENRSCEKKF*SSFEATDSFLCALS
Trigger: AGAAAGAGCACATAGGAAGGAATCGGTGGCTTCAAATGATGACAAGAACTTCTTCTCGCAGGACCTATTTTCTCCTTTCAGTTCTGCTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS TCA 72 bp ATATGGGTTGGAGTTCTCGACAGGATTGAATGCCTTTaGACTTGGCATGATAGCACTGGAATTGTCTGTTCT +
Preference number: 6 (lower is better)
Translates to: IWVGVLDRIECL*TWHDSTGIVCS
Trigger: AGAACAGACAATTCCAGTGCTATCATGCCAAGTTCAAAGGCATTCAATCCTGTCGAGAACTCCAACCCATAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS GCA 72 bp TCTTCATCAGCAGAACTGAAAGGAGAAAATAGGTCCTaGGAGAAGAAGTTCTTGTCATCATTTGAAGCCACC +
Preference number: 6 (lower is better)
Translates to: SSSAELKGENRS*EKKFLSSFEAT
Trigger: GGTGGCTTCAAATGATGACAAGAACTTCTTCTCGCAGGACCTATTTTCTCCTTTCAGTTCTGCTGATGAAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS CCA 72 bp CTATGCTTGTCTGGCAGTACAGATGGCCCATGGAAATaGGAATCTTTCTTCTTAGTAGTTGACTTCTTAGAG +
Preference number: 6 (lower is better)
Translates to: LCLSGSTDGPWK*ESFFLVVDFLE
Trigger: CTCTAAGAAGTCAACTACTAAGAAGAAAGATTCCCATTTCCATGGGCCATCTGTACTGCCAGACAAGCATAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS CCA 72 bp GAAGTGACTGTTGGTAATACTAGTGGGTTTCTCAAATaGAACCCTGTCTCTTTAGTAATAGCCTGCTGCATC +
Preference number: 6 (lower is better)
Translates to: EVTVGNTSGFLK*NPVSLVIACCI
Trigger: GATGCAGCAGGCTATTACTAAAGAGACAGGGTTCCATTTGAGAAACCCACTAGTATTACCAACAGTCACTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS CAA 72 bp AGATGCTGCATGGTTACTCTTTCCAATCTTTTCAGATaGCTGCTCCTCTCTAGGTGTGATCTTGTTAGACTG +
Preference number: 6 (lower is better)
Translates to: RCCMVTLSNLFR*LLLSRCDLVRL
Trigger: CAGTCTAACAAGATCACACCTAGAGAGGAGCAGCAATCTGAAAAGATTGGAAAGAGTAACCATGCAGCATCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS CAA 72 bp CTTCAAACACTGATCTCCTCTTTACTGCGCCTTGAGTaGAAGATGAAGATGAAGATGCTGCATGGTTACTCT +
Preference number: 6 (lower is better)
Translates to: LQTLISSLLRLE*KMKMKMLHGYS
Trigger: AGAGTAACCATGCAGCATCTTCATCTTCATCTTCAACTCAAGGCGCAGTAAAGAGGAGATCAGTGTTTGAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS CAA 72 bp CTGAAAGGAGAAAATAGGTCCTGCGAGAAGAAGTTCTaGTCATCATTTGAAGCCACCGATTCCTTCCTATGT +
Preference number: 6 (lower is better)
Translates to: LKGENRSCEKKF*SSFEATDSFLC
Trigger: ACATAGGAAGGAATCGGTGGCTTCAAATGATGACAAGAACTTCTTCTCGCAGGACCTATTTTCTCCTTTCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS CAA 72 bp CAGGCTTATGATCAAAGGATAAAGAGTCCATGGGGTTaGCCTTTTTATTGCTGGAATTCTCTTCCAAGGCCA +
Preference number: 6 (lower is better)
Translates to: QAYDQRIKSPWG*PFYCWNSLPRP
Trigger: TGGCCTTGGAAGAGAATTCCAGCAATAAAAAGGCAAACCCCATGGACTCTTTATCCTTTGATCATAAGCCTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS CAA 90 bp TCTCAGTGTCAGGCTTATGATCAAAGGATAAAGAGTCCATGGGGTTaGCCTTTTTATTGCTGGAATTCTCTTCCAAGGCCAATAGTTCCT +
Preference number: 6 (lower is better)
Translates to: SQCQAYDQRIKSPWG*PFYCWNSLPRPIVP
Trigger: AGGAACTATTGGCCTTGGAAGAGAATTCCAGCAATAAAAAGGCAAACCCCATGGACTCTTTATCCTTTGATCATAAGCCTGACACTGAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS TCA 72 bp ACATCTTCAAACACTGATCTCCTCTTTACTGCGCCTTaGGTTGAAGATGAAGATGAAGATGCTGCATGGTTA +
Preference number: 6 (lower is better)
Translates to: TSSNTDLLFTAP*VEDEDEDAAWL
Trigger: TAACCATGCAGCATCTTCATCTTCATCTTCAACTCAAGGCGCAGTAAAGAGGAGATCAGTGTTTGAAGATGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS TCA 72 bp AACACCTGTGGCTTCTTCAAGATGCTTGCATCTTCTTaGGTATTATATTTCTCTTCCAGTGATGGCTCCTGT +
Preference number: 6 (lower is better)
Translates to: NTCGFFKMLASS*VLYFSSSDGSC
Trigger: ACAGGAGCCATCACTGGAAGAGAAATATAATACTCAAGAAGATGCAAGCATCTTGAAGAAGCCACAGGTGTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS CCA 72 bp TTTTCCCTGAGGGTCAGGATTATTTTTAGAAGAGGATaGCTTCTTTGTATGGGTTGCTTCATTGGCACTATG +
Preference number: 6 (lower is better)
Translates to: FSLRVRIIFRRG*LLCMGCFIGTM
Trigger: CATAGTGCCAATGAAGCAACCCATACAAAGAAGCCATCCTCTTCTAAAAATAATCCTGACCCTCAGGGAAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS CCA 72 bp TTTCAATTCTTTCCAGGCTGTCACTGTCATCCTGTATaGTTATCTCAGTTTCTTTTGCACCCAGAGTTGACT +
Preference number: 6 (lower is better)
Translates to: FQFFPGCHCHPV*LSQFLLHPELT
Trigger: AGTCAACTCTGGGTGCAAAAGAAACTGAGATAACCATACAGGATGACAGTGACAGCCTGGAAAGAATTGAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS CAA 72 bp AAAATAGGTCCTGCGAGAAGAAGTTCTTGTCATCATTaGAAGCCACCGATTCCTTCCTATGTGCTCTTTCTT +
Preference number: 6 (lower is better)
Translates to: KIGPARRSSCHH*KPPIPSYVLFL
Trigger: AAGAAAGAGCACATAGGAAGGAATCGGTGGCTTCAAATGATGACAAGAACTTCTTCTCGCAGGACCTATTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS CAA 72 bp TCAGTTTCTTTTGCACCCAGAGTTGACTTAAAGCTTTaGGAACTAGACACATATGGGTTGGAGTTCTCGACA +
Preference number: 6 (lower is better)
Translates to: SVSFAPRVDLKL*ELDTYGLEFST
Trigger: TGTCGAGAACTCCAACCCATATGTGTCTAGTTCCAAAAGCTTTAAGTCAACTCTGGGTGCAAAAGAAACTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS CAA 90 bp AGTGGTAGACATCTTAAAGAACAATGGCTTGCGAATGACTGTTTCTaGTACTGCAGAGTTACTGAAGAAACGTCTTCTTTTAGGGAGCTG +
Preference number: 6 (lower is better)
Translates to: SGRHLKEQWLANDCF*YCRVTEETSSFREL
Trigger: CAGCTCCCTAAAAGAAGACGTTTCTTCAGTAACTCTGCAGTACAAGAAACAGTCATTCGCAAGCCATTGTTCTTTAAGATGTCTACCACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS CAA 90 bp AGCAAATGGTTTAACTTCCTGACCAAGATATGGAGTTCTGCCATCTaGTACCCAGTGAAATATTCCAGTGTAGGAACACAATTGCTGAGA +
Preference number: 6 (lower is better)
Translates to: SKWFNFLTKIWSSAI*YPVKYSSVGTQLLR
Trigger: TCTCAGCAATTGTGTTCCTACACTGGAATATTTCACTGGGTACAAGATGGCAGAACTCCATATCTTGGTCAGGAAGTTAAACCATTTGCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS TCA 72 bp TGGCCCATGGAAATGGGAATCTTTCTTCTTAGTAGTTaGCTTCTTAGAGGACATTGGCTCATTTTCATAGGT +
Preference number: 6 (lower is better)
Translates to: WPMEMGIFLLSS*LLRGHWLIFIG
Trigger: ACCTATGAAAATGAGCCAATGTCCTCTAAGAAGTCAACTACTAAGAAGAAAGATTCCCATTTCCATGGGCCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS TCA 72 bp AGTAGGTCTCTTCAGAATACTTCTCAAACACATTCTTaGGGATACTATGGGATCGGAAGTTCAGCAAATGGT +
Preference number: 6 (lower is better)
Translates to: SRSLQNTSQTHS*GYYGIGSSANG
Trigger: ACCATTTGCTGAACTTCCGATCCCATAGTATCCTCAAGAATGTGTTTGAGAAGTATTCTGAAGAGACCTACT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS GCA 72 bp AAAGAACAATGGCTTGCGAATGACTGTTTCTTGTACTaGAGAGTTACTGAAGAAACGTCTTCTTTTAGGGAG +
Preference number: 6 (lower is better)
Translates to: KEQWLANDCFLY*RVTEETSSFRE
Trigger: CTCCCTAAAAGAAGACGTTTCTTCAGTAACTCTGCAGTACAAGAAACAGTCATTCGCAAGCCATTGTTCTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS GCA 72 bp TATGCTGTGGGAATATTGATGTCAAAGTTGAGAGTTTaGAGGATGCTGCTTTCCAAAGATACCATATCACTC +
Preference number: 6 (lower is better)
Translates to: YAVGILMSKLRV*RMLLSKDTISL
Trigger: GAGTGATATGGTATCTTTGGAAAGCAGCATCCTGCAAACTCTCAACTTTGACATCAATATTCCCACAGCATA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS CCA 72 bp ATGAAGCGGGATAAGGTTAGTGTCTTCATGCTAGCATaGATGCACGAAGCATATCTACGCAGAAAATTATAT +
Preference number: 6 (lower is better)
Translates to: MKRDKVSVFMLA*MHEAYLRRKLY
Trigger: ATATAATTTTCTGCGTAGATATGCTTCGTGCATCCATGCTAGCATGAAGACACTAACCTTATCCCGCTTCAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS CCA 72 bp AAGTTCAGCAAATGGTTTAACTTCCTGACCAAGATATaGAGTTCTGCCATCTTGTACCCAGTGAAATATTCC +
Preference number: 6 (lower is better)
Translates to: KFSKWFNFLTKI*SSAILYPVKYS
Trigger: GGAATATTTCACTGGGTACAAGATGGCAGAACTCCATATCTTGGTCAGGAAGTTAAACCATTTGCTGAACTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS CAA 72 bp TCAAAGGATAAAGAGTCCATGGGGTTTGCCTTTTTATaGCTGGAATTCTCTTCCAAGGCCAATAGTTCCTTT +
Preference number: 6 (lower is better)
Translates to: SKDKESMGFAFL*LEFSSKANSSF
Trigger: AAAGGAACTATTGGCCTTGGAAGAGAATTCCAGCAATAAAAAGGCAAACCCCATGGACTCTTTATCCTTTGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS CAA 72 bp TTGAATGCCTTTGAACTTGGCATGATAGCACTGGAATaGTCTGTTCTGGATTCAAAAGCATTGCTGGACATA +
Preference number: 6 (lower is better)
Translates to: LNAFELGMIALE*SVLDSKALLDI
Trigger: TATGTCCAGCAATGCTTTTGAATCCAGAACAGACAATTCCAGTGCTATCATGCCAAGTTCAAAGGCATTCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS CAA 72 bp GTTGACTTAAAGCTTTTGGAACTAGACACATATGGGTaGGAGTTCTCGACAGGATTGAATGCCTTTGAACTT +
Preference number: 6 (lower is better)
Translates to: VDLKLLELDTYG*EFSTGLNAFEL
Trigger: AAGTTCAAAGGCATTCAATCCTGTCGAGAACTCCAACCCATATGTGTCTAGTTCCAAAAGCTTTAAGTCAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS CAA 72 bp TTTAACTTCCTGACCAAGATATGGAGTTCTGCCATCTaGTACCCAGTGAAATATTCCAGTGTAGGAACACAA +
Preference number: 6 (lower is better)
Translates to: FNFLTKIWSSAI*YPVKYSSVGTQ
Trigger: TTGTGTTCCTACACTGGAATATTTCACTGGGTACAAGATGGCAGAACTCCATATCTTGGTCAGGAAGTTAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS CAA 90 bp TATGTGCTCTTTCTTGACTGGTGGTCTTCTGTGAGGCAAATGGCATaGAGTGGGATAGTTTTTGTGAAATTAAGCAATTTTCATTTGGTG +
Preference number: 6 (lower is better)
Translates to: YVLFLDWWSSVRQMA*SGIVFVKLSNFHLV
Trigger: CACCAAATGAAAATTGCTTAATTTCACAAAAACTATCCCACTCAATGCCATTTGCCTCACAGAAGACCACCAGTCAAGAAAGAGCACATA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS CAA 90 bp ATGCACGAAGCATATCTACGCAGAAAATTATATGCTGTGGGAATATaGATGTCAAAGTTGAGAGTTTGCAGGATGCTGCTTTCCAAAGAT +
Preference number: 6 (lower is better)
Translates to: MHEAYLRRKLYAVGI*MSKLRVCRMLLSKD
Trigger: ATCTTTGGAAAGCAGCATCCTGCAAACTCTCAACTTTGACATCAATATTCCCACAGCATATAATTTTCTGCGTAGATATGCTTCGTGCAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS GCA 72 bp ATAGAAAACAAATTTCTGTCTTCATCTGTCATTTCCTaGCACTCTGACTGTGCTTGCTGTAAGGTTATTGTG +
Preference number: 6 (lower is better)
Translates to: IENKFLSSSVIS*HSDCACCKVIV
Trigger: CACAATAACCTTACAGCAAGCACAGTCAGAGTGGCAGGAAATGACAGATGAAGACAGAAATTTGTTTTCTAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS GCA 72 bp ATAATGCACAATTCAAAAGATTCTCTAGATCTTGCTTaGTCAAAGGAGGGATTTTGGCGACTTCAAAGTAGG +
Preference number: 6 (lower is better)
Translates to: IMHNSKDSLDLA*SKEGFWRLQSR
Trigger: CCTACTTTGAAGTCGCCAAAATCCCTCCTTTGAGCAAGCAAGATCTAGAGAATCTTTTGAATTGTGCATTAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS GCA 72 bp TGGAATAATGCACAATTCAAAAGATTCTCTAGATCTTaGTTGCTCAAAGGAGGGATTTTGGCGACTTCAAAG +
Preference number: 6 (lower is better)
Translates to: WNNAQFKRFSRS*LLKGGILATSK
Trigger: CTTTGAAGTCGCCAAAATCCCTCCTTTGAGCAAGCAAGATCTAGAGAATCTTTTGAATTGTGCATTATTCCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS CAA 72 bp ATATGCTGTGGGAATATTGATGTCAAAGTTGAGAGTTaGCAGGATGCTGCTTTCCAAAGATACCATATCACT +
Preference number: 6 (lower is better)
Translates to: ICCGNIDVKVES*QDAAFQRYHIT
Trigger: AGTGATATGGTATCTTTGGAAAGCAGCATCCTGCAAACTCTCAACTTTGACATCAATATTCCCACAGCATAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS CAA 72 bp GCATATCTACGCAGAAAATTATATGCTGTGGGAATATaGATGTCAAAGTTGAGAGTTTGCAGGATGCTGCTT +
Preference number: 6 (lower is better)
Translates to: AYLRRKLYAVGI*MSKLRVCRMLL
Trigger: AAGCAGCATCCTGCAAACTCTCAACTTTGACATCAATATTCCCACAGCATATAATTTTCTGCGTAGATATGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS CAA 90 bp TGTTATTTGTATTCTCTTGTAACACCTGTGGCTTCTTCAAGATGCTaGCATCTTCTTGAGTATTATATTTCTCTTCCAGTGATGGCTCCT +
Preference number: 6 (lower is better)
Translates to: CYLYSLVTPVASSRC*HLLEYYISLPVMAP
Trigger: AGGAGCCATCACTGGAAGAGAAATATAATACTCAAGAAGATGCAAGCATCTTGAAGAAGCCACAGGTGTTACAAGAGAATACAAATAACA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS CAA 90 bp CTTGGCATGATAGCACTGGAATTGTCTGTTCTGGATTCAAAAGCATaGCTGGACATATTAGGGCTATTCTTATTTTCAAAGACAAGGAAT +
Preference number: 6 (lower is better)
Translates to: LGMIALELSVLDSKA*LDILGLFLFSKTRN
Trigger: ATTCCTTGTCTTTGAAAATAAGAATAGCCCTAATATGTCCAGCAATGCTTTTGAATCCAGAACAGACAATTCCAGTGCTATCATGCCAAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS CAA 90 bp TATCTACGCAGAAAATTATATGCTGTGGGAATATTGATGTCAAAGTaGAGAGTTTGCAGGATGCTGCTTTCCAAAGATACCATATCACTC +
Preference number: 6 (lower is better)
Translates to: YLRRKLYAVGILMSK*RVCRMLLSKDTISL
Trigger: GAGTGATATGGTATCTTTGGAAAGCAGCATCCTGCAAACTCTCAACTTTGACATCAATATTCCCACAGCATATAATTTTCTGCGTAGATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS TCA 72 bp GGAAACATGGCTTTTAAGCTCTATATTGTCTTCCTTTaGCTGGACACATTGACTATGAGATGCATTAGTTAC +
Preference number: 6 (lower is better)
Translates to: GNMAFKLYIVFL*LDTLTMRCISY
Trigger: GTAACTAATGCATCTCATAGTCAATGTGTCCAGTCAAAGGAAGACAATATAGAGCTTAAAAGCCATGTTTCC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS TCA 72 bp TGCCACTCTGACTGTGCTTGCTGTAAGGTTATTGTGTaGGTAGTACTCTTTCTTTTCAGTAAAGATGTATTT +
Preference number: 6 (lower is better)
Translates to: CHSDCACCKVIV*VVLFLFSKDVF
Trigger: AAATACATCTTTACTGAAAAGAAAGAGTACTACTCACACAATAACCTTACAGCAAGCACAGTCAGAGTGGCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS TCA 72 bp GAAATTAAGCAATTTTCATTTGGTGGCAATGGATTCTaGAGGAACTCAGGTATAGGTTCCTTCCTATGTGAT +
Preference number: 6 (lower is better)
Translates to: EIKQFSFGGNGF*RNSGIGSFLCD
Trigger: ATCACATAGGAAGGAACCTATACCTGAGTTCCTTCAGAATCCATTGCCACCAAATGAAAATTGCTTAATTTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS GCA 72 bp ATGGATGCACGAAGCATATCTACGCAGAAAATTATATaGTGTGGGAATATTGATGTCAAAGTTGAGAGTTTG +
Preference number: 6 (lower is better)
Translates to: MDARSISTQKII*CGNIDVKVESL
Trigger: CAAACTCTCAACTTTGACATCAATATTCCCACAGCATATAATTTTCTGCGTAGATATGCTTCGTGCATCCAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS CCA 72 bp TATCTATGTTGTACTCTTCATCAGTTAATACCATTCTaGCTATTTCACCCATCTCAGTGTCAGGCTTATGAT +
Preference number: 6 (lower is better)
Translates to: YLCCTLHQLIPF*LFHPSQCQAYD
Trigger: ATCATAAGCCTGACACTGAGATGGGTGAAATAGCCAGAATGGTATTAACTGATGAAGAGTACAACATAGATA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS CAA 72 bp ACAGATGGTTCCTCAGTAGTTAGTGTTTTAGGCTTGTaGGGTATATCCAGAATAAACTCTTTCTCCATGTTT +
Preference number: 6 (lower is better)
Translates to: TDGSSVVSVLGL*GISRINSFSMF
Trigger: AAACATGGAGAAAGAGTTTATTCTGGATATACCCAACAAGCCTAAAACACTAACTACTGAGGAACCATCTGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS CAA 72 bp CATCTTAAAGAACAATGGCTTGCGAATGACTGTTTCTaGTACTGCAGAGTTACTGAAGAAACGTCTTCTTTT +
Preference number: 6 (lower is better)
Translates to: HLKEQWLANDCF*YCRVTEETSSF
Trigger: AAAAGAAGACGTTTCTTCAGTAACTCTGCAGTACAAGAAACAGTCATTCGCAAGCCATTGTTCTTTAAGATG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS CAA 72 bp TTTCTTGACTGGTGGTCTTCTGTGAGGCAAATGGCATaGAGTGGGATAGTTTTTGTGAAATTAAGCAATTTT +
Preference number: 6 (lower is better)
Translates to: FLDWWSSVRQMA*SGIVFVKLSNF
Trigger: AAAATTGCTTAATTTCACAAAAACTATCCCACTCAATGCCATTTGCCTCACAGAAGACCACCAGTCAAGAAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS CAA 90 bp CTATGTTTCCCTTTAAAAGTAACTGGCTCTGTTAAAGTAGCATCTTaGTTATTTGTATTCTCTTGTAACACCTGTGGCTTCTTCAAGATG +
Preference number: 6 (lower is better)
Translates to: LCFPLKVTGSVKVAS*LFVFSCNTCGFFKM
Trigger: CATCTTGAAGAAGCCACAGGTGTTACAAGAGAATACAAATAACAAAGATGCTACTTTAACAGAGCCAGTTACTTTTAAAGGGAAACATAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS CAA 90 bp CAGAAAATTATATGCTGTGGGAATATTGATGTCAAAGTTGAGAGTTaGCAGGATGCTGCTTTCCAAAGATACCATATCACTCTTTTCATA +
Preference number: 6 (lower is better)
Translates to: QKIICCGNIDVKVES*QDAAFQRYHITLFI
Trigger: TATGAAAAGAGTGATATGGTATCTTTGGAAAGCAGCATCCTGCAAACTCTCAACTTTGACATCAATATTCCCACAGCATATAATTTTCTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS GCA 72 bp TTGTATTCTCTTGTAACACCTGTGGCTTCTTCAAGATaGTTGCATCTTCTTGAGTATTATATTTCTCTTCCA +
Preference number: 6 (lower is better)
Translates to: LYSLVTPVASSR*LHLLEYYISLP
Trigger: TGGAAGAGAAATATAATACTCAAGAAGATGCAAGCATCTTGAAGAAGCCACAGGTGTTACAAGAGAATACAA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS CCA 72 bp AGACTTCTTCAAATCAGTCATCTCCTCAATGATGGTTaGATCTTCAGGTTTATCCTTCTTTTTAGAAGTCAT +
Preference number: 6 (lower is better)
Translates to: RLLQISHLLNDG*IFRFILLFRSH
Trigger: ATGACTTCTAAAAAGAAGGATAAACCTGAAGATCCAACCATCATTGAGGAGATGACTGATTTGAAGAAGTCT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8
CDS CAA 72 bp ATAGCACTGGAATTGTCTGTTCTGGATTCAAAAGCATaGCTGGACATATTAGGGCTATTCTTATTTTCAAAG +
Preference number: 6 (lower is better)
Translates to: IALELSVLDSKA*LDILGLFLFSK
Trigger: CTTTGAAAATAAGAATAGCCCTAATATGTCCAGCAATGCTTTTGAATCCAGAACAGACAATTCCAGTGCTAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056725.8
ENSMUST00000115752.8