RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CCNA2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000027715

Ensembl transcript IDs: ENSMUST00000029270.10, ENSMUST00000147380.2, ENSMUST00000196316.2

Found 121 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TGTGACTGTGTAGAGAGCCAAGTGGAAGGCAGCTCCAGCAATGAGTaGAGGCAGGTACTTAAGGTACGGGTCAGCATCTATCAAACTCAG +
Preference number: 1 (lower is better)
Translates to: CDCVESQVEGSSSNE*RQVLKVRVSIYQTQ
Trigger: CTGAGTTTGATAGATGCTGACCCGTACCTTAAGTACCTGCCTTCACTCATTGCTGGAGCTGCCTTCCACTTGGCTCTCTACACAGTCACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147380.2
3UTR TCA 90 bp TCTTCAAACTTCGAAGCTAGCAGCATAGCAGCCGTGCCTACAAGCTaGAGCTTCCCTCTTAACACAGACATGGAGGAGAGGAATCTATCA +
Preference number: 1 (lower is better)
Translates to: SSNFEASSIAAVPTS*SFPLNTDMEERNLS
Trigger: TGATAGATTCCTCTCCTCCATGTCTGTGTTAAGAGGGAAGCTTCAGCTTGTAGGCACGGCTGCTATGCTGCTAGCTTCGAAGTTTGAAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147380.2
3UTR TCA 90 bp TTACAGTTTGCAGGCTGCAGGTGCAGGAAGTACTGGGTAAGGAACTaGTTTACTGTTGGTGCAGCCAAGTCAAAAGCAAGGACTTTCAAT +
Preference number: 1 (lower is better)
Translates to: LQFAGCRCRKYWVRN*FTVGAAKSKARTFN
Trigger: ATTGAAAGTCCTTGCTTTTGACTTGGCTGCACCAACAGTAAATCAGTTCCTTACCCAGTACTTCCTGCACCTGCAGCCTGCAAACTGTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147380.2
3UTR CCA 90 bp AGAAGTGATTGTGAAACTAAAACCCGACATAAAAACTGTACAGCATaGACTCCGAGCGACTCCTGTTTCAAACAAAGCCGGCAGTCTTTC +
Preference number: 1 (lower is better)
Translates to: RSDCETKTRHKNCTA*TPSDSCFKQSRQSF
Trigger: GAAAGACTGCCGGCTTTGTTTGAAACAGGAGTCGCTCGGAGTCCATGCTGTACAGTTTTTATGTCGGGTTTTAGTTTCACAATCACTTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029270.10
ENSMUST00000147380.2
ENSMUST00000196316.2
3UTR TCA 90 bp AAAGCCGGCAGTCTTTCACTCACACACTTAGTGTCTCTGGTGGGTTaGGAAGAGAAACACTGTGATATTTTGAATGCTTGTACTTTTCCC +
Preference number: 1 (lower is better)
Translates to: KAGSLSLTHLVSLVG*EEKHCDILNACTFP
Trigger: GGGAAAAGTACAAGCATTCAAAATATCACAGTGTTTCTCTTCTCAACCCACCAGAGACACTAAGTGTGTGAGTGAAAGACTGCCGGCTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000147380.2
3UTR CCA 90 bp TTTCTGGCCTCTTTCAAATATACATTAAAAGCTGGTTCTATAAAATaGGGCACCTTTCAGAGTCCCAGTGACCCAATCCAGGACAGATGG +
Preference number: 1 (lower is better)
Translates to: FLASFKYTLKAGSIK*GTFQSPSDPIQDRW
Trigger: CCATCTGTCCTGGATTGGGTCACTGGGACTCTGAAAGGTGCCCCATTTTATAGAACCAGCTTTTAATGTATATTTGAAAGAGGCCAGAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029270.10
3UTR CCA 90 bp GGAAAAGGAAGAAGAAGAAGAGAACTGCTAACTAAGCTAAAGTGGTaGATCTCTGTGTGTGTGTGTGTGTATACATACTCAGTGCTAACA +
Preference number: 1 (lower is better)
Translates to: GKGRRRRELLTKLKW*ISVCVCVYTYSVLT
Trigger: TGTTAGCACTGAGTATGTATACACACACACACACACAGAGATCCACCACTTTAGCTTAGTTAGCAGTTCTCTTCTTCTTCTTCCTTTTCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029270.10
3UTR-3UTR TCA 90 bp CAGGTGCAGGAAGTACTGGGTAAGGAACTGATTTACTGTTGGTGCAGCCAAGTCCTGGTCTCCATGCAGTaGTGTCATAGCAACCGCAGA +
Preference number: 2 (lower is better)
Translates to: QVQEVLGKELIYCWCSQVLVSMQ*CHSNRR
Trigger: TCTGCGGTTGCTATGACATCACTGCATGGAGACCAG...GACTTGGCTGCACCAACAGTAAATCAGTTCCTTACCCAGTACTTCCTGCACCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147380.2
3UTR-3UTR GCA 90 bp GTTTCAAACAAAGCCGGCAGTCTTTCACTCACACACTTAGTGTCTCTGGTGGGTTTTGCAGGCTGCAGGTaGAGGAAGTACTGGGTAAGG +
Preference number: 2 (lower is better)
Translates to: VSNKAGSLSLTHLVSLVGFAGCR*RKYWVR
Trigger: CCTTACCCAGTACTTCCTGCACCTGCAGCCTGCAAA...ACCCACCAGAGACACTAAGTGTGTGAGTGAAAGACTGCCGGCTTTGTTTGAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147380.2
3UTR-3UTR GCA 90 bp CGCTTTGAGGTAGGTCTGGTGAAGGTCCACAAGACAAGGCTTAAGACTCTCCAGTTCAACCTTACAGTTTaGAGGCTGCAGGTGCAGGAA +
Preference number: 2 (lower is better)
Translates to: RFEVGLVKVHKTRLKTLQFNLTV*RLQVQE
Trigger: TTCCTGCACCTGCAGCCTGCAAACTGTAAGGTTGAA...CTGGAGAGTCTTAAGCCTTGTCTTGTGGACCTTCACCAGACCTACCTCAAAGCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147380.2
3UTR-3UTR CCA 90 bp AGCCGGCAGTCTTTCACTCACACACTTAGTGTCTCTGGTGGGTTGAGAAGAGAAGCTGTTAGTGATGTCTaGCTGCCTCTTCATGTAACC +
Preference number: 2 (lower is better)
Translates to: SRQSFTHTLSVSGGLRREAVSDV*LPLHVT
Trigger: GGTTACATGAAGAGGCAGCCAGACATCACTAACAGC...TTCTCTTCTCAACCCACCAGAGACACTAAGTGTGTGAGTGAAAGACTGCCGGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147380.2
3UTR-3UTR GCA 90 bp GACTCCTGTTTCAAACAAAGCCGGCAGTCTTTCACTCACACACTTAGTGTCTCTTTACAGTTTGCAGGCTaGAGGTGCAGGAAGTACTGG +
Preference number: 2 (lower is better)
Translates to: DSCFKQSRQSFTHTLSVSLQFAG*RCRKYW
Trigger: CCAGTACTTCCTGCACCTGCAGCCTGCAAACTGTAA...AGAGACACTAAGTGTGTGAGTGAAAGACTGCCGGCTTTGTTTGAAACAGGAGTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147380.2
3UTR-3UTR TCA 90 bp CAGGTGCAGGAAGTACTGGGTAAGGAACTGATTTACTGTTGGTGCAGCCAAGTCTTATTCTCAATATCTTaGCAGTTGGCAGCACCAATG +
Preference number: 2 (lower is better)
Translates to: QVQEVLGKELIYCWCSQVLFSIS*QLAAPM
Trigger: CATTGGTGCTGCCAACTGTCAAGATATTGAGAATAA...GACTTGGCTGCACCAACAGTAAATCAGTTCCTTACCCAGTACTTCCTGCACCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147380.2
3UTR-3UTR TCA 90 bp TACAGCATGGACTCCGAGCGACTCCTGTTTCAAACAAAGCCGGCAGTCTTTCACACAGATGGGATACAGTaGGCTGTTATATTACTTCAT +
Preference number: 2 (lower is better)
Translates to: YSMDSERLLFQTKPAVFHTDGIQ*AVILLH
Trigger: ATGAAGTAATATAACAGCTCACTGTATCCCATCTGT...GTGAAAGACTGCCGGCTTTGTTTGAAACAGGAGTCGCTCGGAGTCCATGCTGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029270.10
3UTR-3UTR GCA 90 bp GACTCCTGTTTCAAACAAAGCCGGCAGTCTTTCACTCACACACTTAGTGTCTCTACTTTCAATACTAGGTaGTCCATTCTCAGAACCTGC +
Preference number: 2 (lower is better)
Translates to: DSCFKQSRQSFTHTLSVSTFNTR*SILRTC
Trigger: GCAGGTTCTGAGAATGGAGCACCTAGTATTGAAAGT...AGAGACACTAAGTGTGTGAGTGAAAGACTGCCGGCTTTGTTTGAAACAGGAGTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147380.2
3UTR-3UTR CCA 90 bp TACAGCATGGACTCCGAGCGACTCCTGTTTCAAACAAAGCCGGCAGTCTTTCACACCATAATTTGTCTGTaGCTATACCATCTACATTCA +
Preference number: 2 (lower is better)
Translates to: YSMDSERLLFQTKPAVFHTIICL*LYHLHS
Trigger: TGAATGTAGATGGTATAGCCACAGACAAATTATGGT...GTGAAAGACTGCCGGCTTTGTTTGAAACAGGAGTCGCTCGGAGTCCATGCTGTA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029270.10
ENSMUST00000147380.2
ENSMUST00000196316.2
3UTR-3UTR GCA 90 bp TGTCTGTGGCTATACCATCTACATTCAGAAGTGATTGTGAAACTAAAACCCGACTATCTCTGGTCTCCATaGAGTGATGTCATAGCAACC +
Preference number: 2 (lower is better)
Translates to: CLWLYHLHSEVIVKLKPDYLWSP*SDVIAT
Trigger: GGTTGCTATGACATCACTGCATGGAGACCAGAGATA...GTCGGGTTTTAGTTTCACAATCACTTCTGAATGTAGATGGTATAGCCACAGACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147380.2
3UTR-3UTR CCA 90 bp GGTAAGGAACTGATTTACTGTTGGTGCAGCCAAGTCAAAAGCAAGGACTTTCAACTCTTAACACAGACATaGAGGAGAGGAATCTATCAA +
Preference number: 2 (lower is better)
Translates to: GKELIYCWCSQVKSKDFQLLTQT*RRGIYQ
Trigger: TTGATAGATTCCTCTCCTCCATGTCTGTGTTAAGAG...TTGAAAGTCCTTGCTTTTGACTTGGCTGCACCAACAGTAAATCAGTTCCTTACC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147380.2
3UTR-3UTR CCA 90 bp TGGCTATACCATCTACATTCAGAAGTGATTGTGAAACTAAAACCCGACATAAAATCCCGTATTGACTGTTaGGCATGTTGTGGCGCTTTG +
Preference number: 2 (lower is better)
Translates to: WLYHLHSEVIVKLKPDIKSRIDC*ACCGAL
Trigger: CAAAGCGCCACAACATGCCCAACAGTCAATACGGGA...TTTTATGTCGGGTTTTAGTTTCACAATCACTTCTGAATGTAGATGGTATAGCCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000147380.2
3UTR-3UTR CCA 90 bp GATTGTGAAACTAAAACCCGACATAAAAACTGTACAGCATGGACTCCGAGCGACACCATAATTTGTCTGTaGCTATACCATCTACATTCA +
Preference number: 2 (lower is better)
Translates to: DCETKTRHKNCTAWTPSDTIICL*LYHLHS
Trigger: TGAATGTAGATGGTATAGCCACAGACAAATTATGGT...GTCGCTCGGAGTCCATGCTGTACAGTTTTTATGTCGGGTTTTAGTTTCACAATC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029270.10
ENSMUST00000147380.2
ENSMUST00000196316.2
3UTR-3UTR TCA 90 bp TGGCTATACCATCTACATTCAGAAGTGATTGTGAAACTAAAACCCGACATAAAATTATTCTCAATATCTTaGCAGTTGGCAGCACCAATG +
Preference number: 2 (lower is better)
Translates to: WLYHLHSEVIVKLKPDIKLFSIS*QLAAPM
Trigger: CATTGGTGCTGCCAACTGTCAAGATATTGAGAATAA...TTTTATGTCGGGTTTTAGTTTCACAATCACTTCTGAATGTAGATGGTATAGCCA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029270.10
ENSMUST00000147380.2
ENSMUST00000196316.2
3UTR-3UTR CCA 90 bp ACTGTAACATCTGAGAGCCGAATGAGTTCTGCTACATTGAAAACAGTTTGTCTAGTCAGCAGTTTGGTTTaGTTGCTTAGAATAATCAAT +
Preference number: 2 (lower is better)
Translates to: TVTSESRMSSATLKTVCLVSSLV*LLRIIN
Trigger: ATTGATTATTCTAAGCAACCAAACCAAACTGCTGAC...TAGACAAACTGTTTTCAATGTAGCAGAACTCATTCGGCTCTCAGATGTTACAGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029270.10
3UTR TCA 72 bp TTCGAAGCTAGCAGCATAGCAGCCGTGCCTACAAGCTaGAGCTTCCCTCTTAACACAGACATGGAGGAGAGG +
Preference number: 3 (lower is better)
Translates to: FEASSIAAVPTS*SFPLNTDMEER
Trigger: CCTCTCCTCCATGTCTGTGTTAAGAGGGAAGCTTCAGCTTGTAGGCACGGCTGCTATGCTGCTAGCTTCGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147380.2
3UTR-3UTR CAA 90 bp CTCCGGGCAGTAGAGCTTGGGAGCTCCCTTAGCCTGGAGATGGGAGCGTTAGGAAATGGATACCATAATTaGTCTGTGGCTATACCATCT +
Preference number: 3 (lower is better)
Translates to: LRAVELGSSLSLEMGALGNGYHN*SVAIPS
Trigger: AGATGGTATAGCCACAGACAAATTATGGTATCCATT...TCCTAACGCTCCCATCTCCAGGCTAAGGGAGCTCCCAAGCTCTACTGCCCGGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029270.10
3UTR TCA 72 bp GCAGGCTGCAGGTGCAGGAAGTACTGGGTAAGGAACTaGTTTACTGTTGGTGCAGCCAAGTCAAAAGCAAGG +
Preference number: 3 (lower is better)
Translates to: AGCRCRKYWVRN*FTVGAAKSKAR
Trigger: CCTTGCTTTTGACTTGGCTGCACCAACAGTAAATCAGTTCCTTACCCAGTACTTCCTGCACCTGCAGCCTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147380.2
3UTR TCA 72 bp TTTCCCGTATTGACTGTTGGGCATGTTGTGGCGCTTTaGGGTAGGTCTGGTGAAGGTCCACAAGACAAGGCT +
Preference number: 3 (lower is better)
Translates to: FPVLTVGHVVAL*GRSGEGPQDKA
Trigger: AGCCTTGTCTTGTGGACCTTCACCAGACCTACCTCAAAGCGCCACAACATGCCCAACAGTCAATACGGGAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147380.2
3UTR TCA 72 bp TGGTTCTATAAAATGGGGCACCTTTCAGAGTCCCAGTaGCCCAATCCAGGACAGATGGGATACAGTGAGCTG +
Preference number: 3 (lower is better)
Translates to: WFYKMGHLSESQ*PNPGQMGYSEL
Trigger: CAGCTCACTGTATCCCATCTGTCCTGGATTGGGTCACTGGGACTCTGAAAGGTGCCCCATTTTATAGAACCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029270.10
3UTR TCA 72 bp GTCCCAGTGACCCAATCCAGGACAGATGGGATACAGTaGGCTGTTATATTACTTCATTCACAGAGCTCAGAC +
Preference number: 3 (lower is better)
Translates to: VPVTQSRTDGIQ*AVILLHSQSSD
Trigger: GTCTGAGCTCTGTGAATGAAGTAATATAACAGCTCACTGTATCCCATCTGTCCTGGATTGGGTCACTGGGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029270.10
3UTR CCA 72 bp TCATGGGCAGTCCTGGTAGCAAGAATTAGAGCATTCTaGCCTACATGTCCTCTGGGGAAAAAGGAAAGAAAG +
Preference number: 3 (lower is better)
Translates to: SWAVLVARIRAF*PTCPLGKKERK
Trigger: CTTTCTTTCCTTTTTCCCCAGAGGACATGTAGGCCAGAATGCTCTAATTCTTGCTACCAGGACTGCCCATGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000029270.10
3UTR-3UTR CAA 90 bp CAGGTGCAGGAAGTACTGGGTAAGGAACTGATTTACTGTTGGTGCAGCCAAGTCTTAACGTTCACTGGCTaGTCTTCTAAGACAATAGAC +
Preference number: 3 (lower is better)
Translates to: QVQEVLGKELIYCWCSQVLTFTG*SSKTID
Trigger: GTCTATTGTCTTAGAAGACAAGCCAGTGAACGTTAA...GACTTGGCTGCACCAACAGTAAATCAGTTCCTTACCCAGTACTTCCTGCACCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147380.2
3UTR CCA 72 bp TGTGAAACTAAAACCCGACATAAAAACTGTACAGCATaGACTCCGAGCGACTCCTGTTTCAAACAAAGCCGG +
Preference number: 3 (lower is better)
Translates to: CETKTRHKNCTA*TPSDSCFKQSR
Trigger: CCGGCTTTGTTTGAAACAGGAGTCGCTCGGAGTCCATGCTGTACAGTTTTTATGTCGGGTTTTAGTTTCACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029270.10
ENSMUST00000147380.2
ENSMUST00000196316.2
3UTR CCA 72 bp TGCCTACAAGCTGAAGCTTCCCTCTTAACACAGACATaGAGGAGAGGAATCTATCAATGTAGTTCACAGCCA +
Preference number: 3 (lower is better)
Translates to: CLQAEASLLTQT*RRGIYQCSSQP
Trigger: TGGCTGTGAACTACATTGATAGATTCCTCTCCTCCATGTCTGTGTTAAGAGGGAAGCTTCAGCTTGTAGGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147380.2
3UTR-3UTR CAA 90 bp GATTGTGAAACTAAAACCCGACATAAAAACTGTACAGCATGGACTCCGAGCGACGGAACTGATTTACTGTaGGTGCAGCCAAGTCAAAAG +
Preference number: 3 (lower is better)
Translates to: DCETKTRHKNCTAWTPSDGTDLL*VQPSQK
Trigger: CTTTTGACTTGGCTGCACCAACAGTAAATCAGTTCC...GTCGCTCGGAGTCCATGCTGTACAGTTTTTATGTCGGGTTTTAGTTTCACAATC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000147380.2
3UTR CCA 72 bp ACCTTTCAGAGTCCCAGTGACCCAATCCAGGACAGATaGGATACAGTGAGCTGTTATATTACTTCATTCACA +
Preference number: 3 (lower is better)
Translates to: TFQSPSDPIQDR*DTVSCYITSFT
Trigger: TGTGAATGAAGTAATATAACAGCTCACTGTATCCCATCTGTCCTGGATTGGGTCACTGGGACTCTGAAAGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029270.10
3UTR CCA 72 bp GTGCAGGAAGTACTGGGTAAGGAACTGATTTACTGTTaGTGCAGCCAAGTCAAAAGCAAGGACTTTCAATAC +
Preference number: 3 (lower is better)
Translates to: VQEVLGKELIYC*CSQVKSKDFQY
Trigger: GTATTGAAAGTCCTTGCTTTTGACTTGGCTGCACCAACAGTAAATCAGTTCCTTACCCAGTACTTCCTGCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147380.2
3UTR-3UTR CAA 90 bp ACTTACTTAGAACAGGGTAAGATTCGGAAAGAGTGTCAGCCTCCGGGCAGTAGAAATCAATGCCAGAATTaGAAGGTCTTTTTCCCTGAA +
Preference number: 3 (lower is better)
Translates to: TYLEQGKIRKECQPPGSRNQCQN*KVFFPE
Trigger: TTCAGGGAAAAAGACCTTCAAATTCTGGCATTGATT...TCTACTGCCCGGAGGCTGACACTCTTTCCGAATCTTACCCTGTTCTAAGTAAGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000029270.10
3UTR-3UTR CAA 90 bp GACTCCTGTTTCAAACAAAGCCGGCAGTCTTTCACTCACACACTTAGTGTCTCTGTTCTCCCAAAAACATaGCTAAGCTTTCAACCTTAC +
Preference number: 3 (lower is better)
Translates to: DSCFKQSRQSFTHTLSVSVLPKT*LSFQPY
Trigger: GTAAGGTTGAAAGCTTAGCAATGTTTTTGGGAGAAC...AGAGACACTAAGTGTGTGAGTGAAAGACTGCCGGCTTTGTTTGAAACAGGAGTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000147380.2
3UTR CCA 72 bp GGAAGAAGAAGAAGAGAACTGCTAACTAAGCTAAAGTaGTGGATCTCTGTGTGTGTGTGTGTGTATACATAC +
Preference number: 3 (lower is better)
Translates to: GRRRRELLTKLK*WISVCVCVYTY
Trigger: GTATGTATACACACACACACACACAGAGATCCACCACTTTAGCTTAGTTAGCAGTTCTCTTCTTCTTCTTCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029270.10
3UTR-3UTR CAA 90 bp GATTGTGAAACTAAAACCCGACATAAAAACTGTACAGCATGGACTCCGAGCGACAATGGATACCATAATTaGTCTGTGGCTATACCATCT +
Preference number: 3 (lower is better)
Translates to: DCETKTRHKNCTAWTPSDNGYHN*SVAIPS
Trigger: AGATGGTATAGCCACAGACAAATTATGGTATCCATT...GTCGCTCGGAGTCCATGCTGTACAGTTTTTATGTCGGGTTTTAGTTTCACAATC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029270.10
ENSMUST00000147380.2
ENSMUST00000196316.2
3UTR-3UTR CAA 90 bp AGCTGTTATATTACTTCATTCACAGAGCTCAGACCAGTGCAAACCAGAAGGCACTTTATTCTCAATATCTaGACAGTTGGCAGCACCAAT +
Preference number: 3 (lower is better)
Translates to: SCYITSFTELRPVQTRRHFILNI*TVGSTN
Trigger: ATTGGTGCTGCCAACTGTCAAGATATTGAGAATAAA...GTGCCTTCTGGTTTGCACTGGTCTGAGCTCTGTGAATGAAGTAATATAACAGCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029270.10
3UTR-3UTR CAA 90 bp AGGCAGGTACTTAAGGTACGGGTCAGCATCTATCAAACTCAGTTCTCCCAAAAATTTATTCTCAATATCTaGACAGTTGGCAGCACCAAT +
Preference number: 3 (lower is better)
Translates to: RQVLKVRVSIYQTQFSQKFILNI*TVGSTN
Trigger: ATTGGTGCTGCCAACTGTCAAGATATTGAGAATAAA...TTTTTGGGAGAACTGAGTTTGATAGATGCTGACCCGTACCTTAAGTACCTGCCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000147380.2
3UTR-3UTR CAA 90 bp CACTGTGATATTTTGAATGCTTGTACTTTTCCCGTATTGACTGTTGGGCATGTTCGTGTGAATGTCTTCTaGATAGTCAGGTACTTCATT +
Preference number: 3 (lower is better)
Translates to: HCDILNACTFPVLTVGHVRVNVF*IVRYFI
Trigger: AATGAAGTACCTGACTATCAAGAAGACATTCACACG...AACATGCCCAACAGTCAATACGGGAAAAGTACAAGCATTCAAAATATCACAGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000147380.2
3UTR-3UTR CAA 90 bp CACTGTGATATTTTGAATGCTTGTACTTTTCCCGTATTGACTGTTGGGCATGTTAATGGATACCATAATTaGTCTGTGGCTATACCATCT +
Preference number: 3 (lower is better)
Translates to: HCDILNACTFPVLTVGHVNGYHN*SVAIPS
Trigger: AGATGGTATAGCCACAGACAAATTATGGTATCCATT...AACATGCCCAACAGTCAATACGGGAAAAGTACAAGCATTCAAAATATCACAGTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000147380.2
CDS-3UTR GCA 90 bp GTGAAGGTCCACAAGACAAGGCTTAAGACTCTCCAGGGTATATCCAGTCTGTTGGCCTTCAGCACCGCCTaGGCCCGCGGCTGCTGGGCT +
Preference number: 4 (lower is better)
Translates to: VKVHKTRLKTLQGISSLLAFSTA*ARGCWA
Trigger: AGCCCAGCAGCCGCGGGCGCAGGCGGTGCTGAAGGC...CAACAGACTGGATATACCCTGGAGAGTCTTAAGCCTTGTCTTGTGGACCTTCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147380.2
CDS-3UTR TCA 90 bp CTCCGGGCAGTAGAGCTTGGGAGCTCCCTTAGCCTGGAGATGGGAGCGTTAGGACATGTTGTGGCGCTTTaGGGTAGGTCTGGTGAAGGT +
Preference number: 4 (lower is better)
Translates to: LRAVELGSSLSLEMGALGHVVAL*GRSGEG
Trigger: ACCTTCACCAGACCTACCTCAAAGCGCCACAACATG...TCCTAACGCTCCCATCTCCAGGCTAAGGGAGCTCCCAAGCTCTACTGCCCGGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029270.10
CDS-3UTR CCA 90 bp CAGGTGCAGGAAGTACTGGGTAAGGAACTGATTTACTGTTGGTGCAGCCAAGTCTGCGCCCGCGGCTGCTaGGCTGGCGCCAGTTTTTCG +
Preference number: 4 (lower is better)
Translates to: QVQEVLGKELIYCWCSQVCARGC*AGASFS
Trigger: CGAAAAACTGGCGCCAGCCCAGCAGCCGCGGGCGCA...GACTTGGCTGCACCAACAGTAAATCAGTTCCTTACCCAGTACTTCCTGCACCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000147380.2
CDS-3UTR TCA 90 bp AAGAGTGTCAGCCTCCGGGCAGTAGAGCTTGGGAGCTCCCTTAGCCTGGAGATGAGGCAGGCTGTTTACTaGCTGCTTTCCATGAAGGAC +
Preference number: 4 (lower is better)
Translates to: KSVSLRAVELGSSLSLEMRQAVY*LLSMKD
Trigger: GTCCTTCATGGAAAGCAGTCAGTAAACAGCCTGCCT...CATCTCCAGGCTAAGGGAGCTCCCAAGCTCTACTGCCCGGAGGCTGACACTCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029270.10
CDS-3UTR TCA 90 bp CTCCGGGCAGTAGAGCTTGGGAGCTCCCTTAGCCTGGAGATGGGAGCGTTAGGAAGCTCCAGCAATGAGTaGAGGCAGGTACTTAAGGTA +
Preference number: 4 (lower is better)
Translates to: LRAVELGSSLSLEMGALGSSSNE*RQVLKV
Trigger: TACCTTAAGTACCTGCCTTCACTCATTGCTGGAGCT...TCCTAACGCTCCCATCTCCAGGCTAAGGGAGCTCCCAAGCTCTACTGCCCGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029270.10
CDS-3UTR CCA 90 bp GCTGTTATATTACTTCATTCACAGAGCTCAGACCAGTGCAAACCAGAAGGCACCTGCGCCCGCGGCTGCTaGGCTGGCGCCAGTTTTTCG +
Preference number: 4 (lower is better)
Translates to: AVILLHSQSSDQCKPEGTCARGC*AGASFS
Trigger: CGAAAAACTGGCGCCAGCCCAGCAGCCGCGGGCGCA...GGTGCCTTCTGGTTTGCACTGGTCTGAGCTCTGTGAATGAAGTAATATAACAGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000029270.10
CDS-3UTR GCA 90 bp TGTCTGTGGCTATACCATCTACATTCAGAAGTGATTGTGAAACTAAAACCCGACGCCTTCAGCACCGCCTaGGCCCGCGGCTGCTGGGCT +
Preference number: 4 (lower is better)
Translates to: CLWLYHLHSEVIVKLKPDAFSTA*ARGCWA
Trigger: AGCCCAGCAGCCGCGGGCGCAGGCGGTGCTGAAGGC...GTCGGGTTTTAGTTTCACAATCACTTCTGAATGTAGATGGTATAGCCACAGACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029270.10
ENSMUST00000147380.2
CDS-3UTR TCA 90 bp TACAGCATGGACTCCGAGCGACTCCTGTTTCAAACAAAGCCGGCAGTCTTTCACAGTCTGTTGTGCCAATaGCTCAGGCCAGCTCTGTCC +
Preference number: 4 (lower is better)
Translates to: YSMDSERLLFQTKPAVFHSLLCQ*LRPALS
Trigger: GGACAGAGCTGGCCTGAGTCATTGGCACAACAGACT...GTGAAAGACTGCCGGCTTTGTTTGAAACAGGAGTCGCTCGGAGTCCATGCTGTA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029270.10
ENSMUST00000196316.2
CDS-3UTR TCA 90 bp TACAGCATGGACTCCGAGCGACTCCTGTTTCAAACAAAGCCGGCAGTCTTTCACCATGTTGTGGCGCTTTaGGGTAGGTCTGGTGAAGGT +
Preference number: 4 (lower is better)
Translates to: YSMDSERLLFQTKPAVFHHVVAL*GRSGEG
Trigger: ACCTTCACCAGACCTACCTCAAAGCGCCACAACATG...GTGAAAGACTGCCGGCTTTGTTTGAAACAGGAGTCGCTCGGAGTCCATGCTGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029270.10
ENSMUST00000196316.2
CDS-3UTR TCA 90 bp TACAGCATGGACTCCGAGCGACTCCTGTTTCAAACAAAGCCGGCAGTCTTTCACTACTGGGTAAGGAACTaGTTTACTGTTGGTGCAGCC +
Preference number: 4 (lower is better)
Translates to: YSMDSERLLFQTKPAVFHYWVRN*FTVGAA
Trigger: GGCTGCACCAACAGTAAATCAGTTCCTTACCCAGTA...GTGAAAGACTGCCGGCTTTGTTTGAAACAGGAGTCGCTCGGAGTCCATGCTGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029270.10
ENSMUST00000196316.2
CDS-3UTR GCA 90 bp AGATTTCCAAATCAGTTTATTCTCAATATCTTGACAGTTGGCAGCACCAATGTTGCCTGCGCCCGCGGCTaGTGGGCTGGCGCCAGTTTT +
Preference number: 4 (lower is better)
Translates to: RFPNQFILNILTVGSTNVACARG*WAGASF
Trigger: AAAACTGGCGCCAGCCCAGCAGCCGCGGGCGCAGGC...AACATTGGTGCTGCCAACTGTCAAGATATTGAGAATAAACTGATTTGGAAATCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029270.10
ENSMUST00000147380.2
CDS-3UTR GCA 90 bp TACCATAATTTGTCTGTGGCTATACCATCTACATTCAGAAGTGATTGTGAAACTGCCTGCGCCCGCGGCTaGTGGGCTGGCGCCAGTTTT +
Preference number: 4 (lower is better)
Translates to: YHNLSVAIPSTFRSDCETACARG*WAGASF
Trigger: AAAACTGGCGCCAGCCCAGCAGCCGCGGGCGCAGGC...AGTTTCACAATCACTTCTGAATGTAGATGGTATAGCCACAGACAAATTATGGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029270.10
ENSMUST00000147380.2
CDS-3UTR TCA 90 bp GAATGCTTGTACTTTTCCCGTATTGACTGTTGGGCATGTTGTGGCGCTTTGAGGACTGACTGCTTTCCATaGAGGACCAGCAGTGACATG +
Preference number: 4 (lower is better)
Translates to: ECLYFSRIDCWACCGALRTDCFP*RTSSDM
Trigger: CATGTCACTGCTGGTCCTTCATGGAAAGCAGTCAGT...CCTCAAAGCGCCACAACATGCCCAACAGTCAATACGGGAAAAGTACAAGCATTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147380.2
CDS-3UTR TCA 90 bp GCTGTTATATTACTTCATTCACAGAGCTCAGACCAGTGCAAACCAGAAGGCACCACTGACTGCTTTCCATaGAGGACCAGCAGTGACATG +
Preference number: 4 (lower is better)
Translates to: AVILLHSQSSDQCKPEGTTDCFP*RTSSDM
Trigger: CATGTCACTGCTGGTCCTTCATGGAAAGCAGTCAGT...GGTGCCTTCTGGTTTGCACTGGTCTGAGCTCTGTGAATGAAGTAATATAACAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029270.10
CDS-3UTR GCA 90 bp CGCTTTGAGGTAGGTCTGGTGAAGGTCCACAAGACAAGGCTTAAGACTCTCCAGCTTCTGAGTCTCTTCTaGTTCATCCACATGAATGGT +
Preference number: 4 (lower is better)
Translates to: RFEVGLVKVHKTRLKTLQLLSLF*FIHMNG
Trigger: ACCATTCATGTGGATGAAGCAGAAGAGACTCAGAAG...CTGGAGAGTCTTAAGCCTTGTCTTGTGGACCTTCACCAGACCTACCTCAAAGCG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147380.2
CDS-3UTR GCA 90 bp GTGATTGTGAAACTAAAACCCGACATAAAAACTGTACAGCATGGACTCCGAGCGTTTGCAGGCTGCAGGTaGAGGAAGTACTGGGTAAGG +
Preference number: 4 (lower is better)
Translates to: VIVKLKPDIKTVQHGLRAFAGCR*RKYWVR
Trigger: CCTTACCCAGTACTTCCTGCACCTGCAGCCTGCAAA...CGCTCGGAGTCCATGCTGTACAGTTTTTATGTCGGGTTTTAGTTTCACAATCAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029270.10
ENSMUST00000196316.2
CDS-3UTR GCA 90 bp AGTCCCAGTGACCCAATCCAGGACAGATGGGATACAGTGAGCTGTTATATTACTTTACAGTTTGCAGGCTaGAGGTGCAGGAAGTACTGG +
Preference number: 4 (lower is better)
Translates to: SPSDPIQDRWDTVSCYITLQFAG*RCRKYW
Trigger: CCAGTACTTCCTGCACCTGCAGCCTGCAAACTGTAA...AGTAATATAACAGCTCACTGTATCCCATCTGTCCTGGATTGGGTCACTGGGACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029270.10
CDS-3UTR GCA 90 bp ACTTACTTAGAACAGGGTAAGATTCGGAAAGAGTGTCAGCCTCCGGGCAGTAGATTCAACCTTACAGTTTaGAGGCTGCAGGTGCAGGAA +
Preference number: 4 (lower is better)
Translates to: TYLEQGKIRKECQPPGSRFNLTV*RLQVQE
Trigger: TTCCTGCACCTGCAGCCTGCAAACTGTAAGGTTGAA...TCTACTGCCCGGAGGCTGACACTCTTTCCGAATCTTACCCTGTTCTAAGTAAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029270.10
CDS-3UTR TCA 90 bp GATTGTGAAACTAAAACCCGACATAAAAACTGTACAGCATGGACTCCGAGCGACAGGCAGGCTGTTTACTaGCTGCTTTCCATGAAGGAC +
Preference number: 4 (lower is better)
Translates to: DCETKTRHKNCTAWTPSDRQAVY*LLSMKD
Trigger: GTCCTTCATGGAAAGCAGTCAGTAAACAGCCTGCCT...GTCGCTCGGAGTCCATGCTGTACAGTTTTTATGTCGGGTTTTAGTTTCACAATC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029270.10
ENSMUST00000147380.2
CDS-3UTR TCA 90 bp TGTCTGTGGCTATACCATCTACATTCAGAAGTGATTGTGAAACTAAAACCCGACAGTCTGTTGTGCCAATaGCTCAGGCCAGCTCTGTCC +
Preference number: 4 (lower is better)
Translates to: CLWLYHLHSEVIVKLKPDSLLCQ*LRPALS
Trigger: GGACAGAGCTGGCCTGAGTCATTGGCACAACAGACT...GTCGGGTTTTAGTTTCACAATCACTTCTGAATGTAGATGGTATAGCCACAGACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029270.10
ENSMUST00000196316.2
CDS-3UTR GCA 90 bp GCTGTTATATTACTTCATTCACAGAGCTCAGACCAGTGCAAACCAGAAGGCACCGGACCAGCAGTGACATaGTCATCGTTTATAGGAAGG +
Preference number: 4 (lower is better)
Translates to: AVILLHSQSSDQCKPEGTGPAVT*SSFIGR
Trigger: CCTTCCTATAAACGATGAGCATGTCACTGCTGGTCC...GGTGCCTTCTGGTTTGCACTGGTCTGAGCTCTGTGAATGAAGTAATATAACAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029270.10
CDS-3UTR CCA 90 bp GTGATTGTGAAACTAAAACCCGACATAAAAACTGTACAGCATGGACTCCGAGCGTCCCGTATTGACTGTTaGGCATGTTGTGGCGCTTTG +
Preference number: 4 (lower is better)
Translates to: VIVKLKPDIKTVQHGLRASRIDC*ACCGAL
Trigger: CAAAGCGCCACAACATGCCCAACAGTCAATACGGGA...CGCTCGGAGTCCATGCTGTACAGTTTTTATGTCGGGTTTTAGTTTCACAATCAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029270.10
ENSMUST00000196316.2
CDS-3UTR TCA 90 bp GATTGTGAAACTAAAACCCGACATAAAAACTGTACAGCATGGACTCCGAGCGACAGCTCCAGCAATGAGTaGAGGCAGGTACTTAAGGTA +
Preference number: 4 (lower is better)
Translates to: DCETKTRHKNCTAWTPSDSSSNE*RQVLKV
Trigger: TACCTTAAGTACCTGCCTTCACTCATTGCTGGAGCT...GTCGCTCGGAGTCCATGCTGTACAGTTTTTATGTCGGGTTTTAGTTTCACAATC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029270.10
ENSMUST00000196316.2
CDS-3UTR GCA 90 bp GCTGTTATATTACTTCATTCACAGAGCTCAGACCAGTGCAAACCAGAAGGCACCACTTTCAATACTAGGTaGTCCATTCTCAGAACCTGC +
Preference number: 4 (lower is better)
Translates to: AVILLHSQSSDQCKPEGTTFNTR*SILRTC
Trigger: GCAGGTTCTGAGAATGGAGCACCTAGTATTGAAAGT...GGTGCCTTCTGGTTTGCACTGGTCTGAGCTCTGTGAATGAAGTAATATAACAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029270.10
CDS-3UTR CCA 90 bp AGTCCCAGTGACCCAATCCAGGACAGATGGGATACAGTGAGCTGTTATATTACTGAACTGATTTACTGTTaGTGCAGCCAAGTCAAAAGC +
Preference number: 4 (lower is better)
Translates to: SPSDPIQDRWDTVSCYITELIYC*CSQVKS
Trigger: GCTTTTGACTTGGCTGCACCAACAGTAAATCAGTTC...AGTAATATAACAGCTCACTGTATCCCATCTGTCCTGGATTGGGTCACTGGGACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029270.10
CDS-3UTR TCA 90 bp GACTTTTCCAAAGGTGCCCCTATAGTGCTATCAGATAGTGAAGAAGAAGAAATGGTGTCTCTGGTGGGTTaGGAAGAGAAACACTGTGAT +
Preference number: 4 (lower is better)
Translates to: DFSKGAPIVLSDSEEEEMVSLVG*EEKHCD
Trigger: ATCACAGTGTTTCTCTTCTCAACCCACCAGAGACAC...CATTTCTTCTTCTTCACTATCTGATAGCACTATAGGGGCACCTTTGGAAAAGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029270.10
CDS-3UTR GCA 90 bp AGCAATGGATACCATAATTTGTCTGTGGCTATACCATCTACATTCAGAAGTGATTTTGCAGGCTGCAGGTaGAGGAAGTACTGGGTAAGG +
Preference number: 4 (lower is better)
Translates to: SNGYHNLSVAIPSTFRSDFAGCR*RKYWVR
Trigger: CCTTACCCAGTACTTCCTGCACCTGCAGCCTGCAAA...ATCACTTCTGAATGTAGATGGTATAGCCACAGACAAATTATGGTATCCATTGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029270.10
ENSMUST00000196316.2
CDS-3UTR TCA 90 bp TACCATAATTTGTCTGTGGCTATACCATCTACATTCAGAAGTGATTGTGAAACTTCAGCTGGCCTCTTCTaGGTCTCTTCTGCTTCATCC +
Preference number: 4 (lower is better)
Translates to: YHNLSVAIPSTFRSDCETSAGLF*VSSASS
Trigger: GGATGAAGCAGAAGAGACTCAGAAGAGGCCAGCTGA...AGTTTCACAATCACTTCTGAATGTAGATGGTATAGCCACAGACAAATTATGGTA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029270.10
ENSMUST00000147380.2
CDS-3UTR CCA 90 bp TGTCTGTGGCTATACCATCTACATTCAGAAGTGATTGTGAAACTAAAACCCGACTTCTTTAAGCTCAGCTaGCCTCTTCTGAGTCTCTTC +
Preference number: 4 (lower is better)
Translates to: CLWLYHLHSEVIVKLKPDFFKLS*PLLSLF
Trigger: GAAGAGACTCAGAAGAGGCCAGCTGAGCTTAAAGAA...GTCGGGTTTTAGTTTCACAATCACTTCTGAATGTAGATGGTATAGCCACAGACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029270.10
ENSMUST00000147380.2
CDS-3UTR CCA 90 bp AGCTGTTATATTACTTCATTCACAGAGCTCAGACCAGTGCAAACCAGAAGGCACCTCTTAACACAGACATaGAGGAGAGGAATCTATCAA +
Preference number: 4 (lower is better)
Translates to: SCYITSFTELRPVQTRRHLLTQT*RRGIYQ
Trigger: TTGATAGATTCCTCTCCTCCATGTCTGTGTTAAGAG...GTGCCTTCTGGTTTGCACTGGTCTGAGCTCTGTGAATGAAGTAATATAACAGCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029270.10
CDS-3UTR CCA 90 bp GTGATTGTGAAACTAAAACCCGACATAAAAACTGTACAGCATGGACTCCGAGCGCTCTTAACACAGACATaGAGGAGAGGAATCTATCAA +
Preference number: 4 (lower is better)
Translates to: VIVKLKPDIKTVQHGLRALLTQT*RRGIYQ
Trigger: TTGATAGATTCCTCTCCTCCATGTCTGTGTTAAGAG...CGCTCGGAGTCCATGCTGTACAGTTTTTATGTCGGGTTTTAGTTTCACAATCAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029270.10
ENSMUST00000196316.2
CDS-3UTR CCA 90 bp GCTGTTATATTACTTCATTCACAGAGCTCAGACCAGTGCAAACCAGAAGGCACCAAACTCTGCTACTTCTaGGGGGTATATTTCTTCAAA +
Preference number: 4 (lower is better)
Translates to: AVILLHSQSSDQCKPEGTKLCYF*GVYFFK
Trigger: TTTGAAGAAATATACCCCCCAGAAGTAGCAGAGTTT...GGTGCCTTCTGGTTTGCACTGGTCTGAGCTCTGTGAATGAAGTAATATAACAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000029270.10
CDS-3UTR CCA 90 bp TATGCTTTGAATAAACTTTCTGGAAAACTTTTCTGTTGCACAAGCTTCCCAACTCTGTTGGGCATGTTGTaGCGCTTTGAGGTAGGTCTG +
Preference number: 4 (lower is better)
Translates to: YALNKLSGKLFCCTSFPTLLGML*RFEVGL
Trigger: CAGACCTACCTCAAAGCGCCACAACATGCCCAACAG...AGTTGGGAAGCTTGTGCAACAGAAAAGTTTTCCAGAAAGTTTATTCAAAGCATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029270.10
CDS-3UTR CCA 90 bp TGGCTATACCATCTACATTCAGAAGTGATTGTGAAACTAAAACCCGACATAAAACTGTTGGGCATGTTGTaGCGCTTTGAGGTAGGTCTG +
Preference number: 4 (lower is better)
Translates to: WLYHLHSEVIVKLKPDIKLLGML*RFEVGL
Trigger: CAGACCTACCTCAAAGCGCCACAACATGCCCAACAG...TTTTATGTCGGGTTTTAGTTTCACAATCACTTCTGAATGTAGATGGTATAGCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029270.10
ENSMUST00000196316.2
CDS-3UTR CCA 90 bp GTGGCTATACCATCTACATTCAGAAGTGATTGTGAAACTAAAACCCGACATAAATCCCGTATTGACTGTTaGGCATGTTGTGGCGCTTTG +
Preference number: 4 (lower is better)
Translates to: VAIPSTFRSDCETKTRHKSRIDC*ACCGAL
Trigger: CAAAGCGCCACAACATGCCCAACAGTCAATACGGGA...TTTATGTCGGGTTTTAGTTTCACAATCACTTCTGAATGTAGATGGTATAGCCAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029270.10
ENSMUST00000196316.2
CDS-3UTR TCA 90 bp GTGGCTATACCATCTACATTCAGAAGTGATTGTGAAACTAAAACCCGACATAAATACTGGGTAAGGAACTaGTTTACTGTTGGTGCAGCC +
Preference number: 4 (lower is better)
Translates to: VAIPSTFRSDCETKTRHKYWVRN*FTVGAA
Trigger: GGCTGCACCAACAGTAAATCAGTTCCTTACCCAGTA...TTTATGTCGGGTTTTAGTTTCACAATCACTTCTGAATGTAGATGGTATAGCCAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029270.10
ENSMUST00000196316.2
CDS-3UTR TCA 90 bp GTGGCTATACCATCTACATTCAGAAGTGATTGTGAAACTAAAACCCGACATAAAGTGTCTCTGGTGGGTTaGGAAGAGAAACACTGTGAT +
Preference number: 4 (lower is better)
Translates to: VAIPSTFRSDCETKTRHKVSLVG*EEKHCD
Trigger: ATCACAGTGTTTCTCTTCTCAACCCACCAGAGACAC...TTTATGTCGGGTTTTAGTTTCACAATCACTTCTGAATGTAGATGGTATAGCCAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029270.10
ENSMUST00000196316.2
CDS-3UTR TCA 90 bp AAGATTTCCAAATCAGTTTATTCTCAATATCTTGACAGTTGGCAGCACCAATGTTGCCTTCCATGTGTCTaGCCTACAAGCAAAACTGCC +
Preference number: 4 (lower is better)
Translates to: KISKSVYSQYLDSWQHQCCLPCV*PTSKTA
Trigger: GGCAGTTTTGCTTGTAGGTCAGACACATGGAAGGCA...ACATTGGTGCTGCCAACTGTCAAGATATTGAGAATAAACTGATTTGGAAATCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147380.2
CDS-3UTR GCA 90 bp AGATTTCCAAATCAGTTTATTCTCAATATCTTGACAGTTGGCAGCACCAATGTTTTACAGTTTGCAGGCTaGAGGTGCAGGAAGTACTGG +
Preference number: 4 (lower is better)
Translates to: RFPNQFILNILTVGSTNVLQFAG*RCRKYW
Trigger: CCAGTACTTCCTGCACCTGCAGCCTGCAAACTGTAA...AACATTGGTGCTGCCAACTGTCAAGATATTGAGAATAAACTGATTTGGAAATCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029270.10
ENSMUST00000196316.2
CDS-3UTR GCA 90 bp AGCAATGGATACCATAATTTGTCTGTGGCTATACCATCTACATTCAGAAGTGATTTCAACCTTACAGTTTaGAGGCTGCAGGTGCAGGAA +
Preference number: 4 (lower is better)
Translates to: SNGYHNLSVAIPSTFRSDFNLTV*RLQVQE
Trigger: TTCCTGCACCTGCAGCCTGCAAACTGTAAGGTTGAA...ATCACTTCTGAATGTAGATGGTATAGCCACAGACAAATTATGGTATCCATTGCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029270.10
ENSMUST00000196316.2
CDS-3UTR CCA 90 bp AATGGATACCATAATTTGTCTGTGGCTATACCATCTACATTCAGAAGTGATTGTGCTGTTAGTGATGTCTaGCTGCCTCTTCATGTAACC +
Preference number: 4 (lower is better)
Translates to: NGYHNLSVAIPSTFRSDCAVSDV*LPLHVT
Trigger: GGTTACATGAAGAGGCAGCCAGACATCACTAACAGC...ACAATCACTTCTGAATGTAGATGGTATAGCCACAGACAAATTATGGTATCCATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029270.10
ENSMUST00000196316.2
CDS-3UTR CCA 90 bp TACCATAATTTGTCTGTGGCTATACCATCTACATTCAGAAGTGATTGTGAAACTGCTGTTAGTGATGTCTaGCTGCCTCTTCATGTAACC +
Preference number: 4 (lower is better)
Translates to: YHNLSVAIPSTFRSDCETAVSDV*LPLHVT
Trigger: GGTTACATGAAGAGGCAGCCAGACATCACTAACAGC...AGTTTCACAATCACTTCTGAATGTAGATGGTATAGCCACAGACAAATTATGGTA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029270.10
ENSMUST00000196316.2
CDS-3UTR GCA 90 bp GCAAAGATTTCCAAATCAGTTTATTCTCAATATCTTGACAGTTGGCAGCACCAACTTCTGAGTCTCTTCTaGTTCATCCACATGAATGGT +
Preference number: 4 (lower is better)
Translates to: AKISKSVYSQYLDSWQHQLLSLF*FIHMNG
Trigger: ACCATTCATGTGGATGAAGCAGAAGAGACTCAGAAG...TTGGTGCTGCCAACTGTCAAGATATTGAGAATAAACTGATTTGGAAATCTTTGC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029270.10
CDS-3UTR GCA 90 bp GTGGCTATACCATCTACATTCAGAAGTGATTGTGAAACTAAAACCCGACATAAACTGATTTACTGTTGGTaGAGCCAAGTCAAAAGCAAG +
Preference number: 4 (lower is better)
Translates to: VAIPSTFRSDCETKTRHKLIYCW*SQVKSK
Trigger: CTTGCTTTTGACTTGGCTGCACCAACAGTAAATCAG...TTTATGTCGGGTTTTAGTTTCACAATCACTTCTGAATGTAGATGGTATAGCCAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029270.10
ENSMUST00000196316.2
CDS-3UTR CCA 90 bp AATGGATACCATAATTTGTCTGTGGCTATACCATCTACATTCAGAAGTGATTGTTTCTTTAAGCTCAGCTaGCCTCTTCTGAGTCTCTTC +
Preference number: 4 (lower is better)
Translates to: NGYHNLSVAIPSTFRSDCFFKLS*PLLSLF
Trigger: GAAGAGACTCAGAAGAGGCCAGCTGAGCTTAAAGAA...ACAATCACTTCTGAATGTAGATGGTATAGCCACAGACAAATTATGGTATCCATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029270.10
ENSMUST00000147380.2
CDS-3UTR CCA 90 bp GCAAAGATTTCCAAATCAGTTTATTCTCAATATCTTGACAGTTGGCAGCACCAAAAAACTGCCATCCATTaGATAGTCAAGAGGTGTCAG +
Preference number: 4 (lower is better)
Translates to: AKISKSVYSQYLDSWQHQKTAIH*IVKRCQ
Trigger: CTGACACCTCTTGACTATCCAATGGATGGCAGTTTT...TTGGTGCTGCCAACTGTCAAGATATTGAGAATAAACTGATTTGGAAATCTTTGC
39% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000029270.10
CDS-3UTR GCA 90 bp GCAAAGATTTCCAAATCAGTTTATTCTCAATATCTTGACAGTTGGCAGCACCAAGTGGTGATTCAAAACTaGCATCCATTGGATAGTCAA +
Preference number: 4 (lower is better)
Translates to: AKISKSVYSQYLDSWQHQVVIQN*HPLDSQ
Trigger: TTGACTATCCAATGGATGGCAGTTTTGAATCACCAC...TTGGTGCTGCCAACTGTCAAGATATTGAGAATAAACTGATTTGGAAATCTTTGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029270.10
CDS-3UTR GCA 90 bp TGGCTATACCATCTACATTCAGAAGTGATTGTGAAACTAAAACCCGACATAAAAACTTTCAATACTAGGTaGTCCATTCTCAGAACCTGC +
Preference number: 4 (lower is better)
Translates to: WLYHLHSEVIVKLKPDIKTFNTR*SILRTC
Trigger: GCAGGTTCTGAGAATGGAGCACCTAGTATTGAAAGT...TTTTATGTCGGGTTTTAGTTTCACAATCACTTCTGAATGTAGATGGTATAGCCA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029270.10
ENSMUST00000196316.2
CDS-3UTR GCA 90 bp AAGATTTCCAAATCAGTTTATTCTCAATATCTTGACAGTTGGCAGCACCAATGTCTGATTTACTGTTGGTaGAGCCAAGTCAAAAGCAAG +
Preference number: 4 (lower is better)
Translates to: KISKSVYSQYLDSWQHQCLIYCW*SQVKSK
Trigger: CTTGCTTTTGACTTGGCTGCACCAACAGTAAATCAG...ACATTGGTGCTGCCAACTGTCAAGATATTGAGAATAAACTGATTTGGAAATCTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029270.10
ENSMUST00000196316.2
CDS-3UTR GCA 90 bp GTGGCTATACCATCTACATTCAGAAGTGATTGTGAAACTAAAACCCGACATAAAACCTACAAGCAAAACTaGCATCCATTGGATAGTCAA +
Preference number: 4 (lower is better)
Translates to: VAIPSTFRSDCETKTRHKTYKQN*HPLDSQ
Trigger: TTGACTATCCAATGGATGGCAGTTTTGCTTGTAGGT...TTTATGTCGGGTTTTAGTTTCACAATCACTTCTGAATGTAGATGGTATAGCCAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000147380.2
CDS-3UTR CCA 90 bp TACCATAATTTGTCTGTGGCTATACCATCTACATTCAGAAGTGATTGTGAAACTGAACTGATTTACTGTTaGTGCAGCCAAGTCAAAAGC +
Preference number: 4 (lower is better)
Translates to: YHNLSVAIPSTFRSDCETELIYC*CSQVKS
Trigger: GCTTTTGACTTGGCTGCACCAACAGTAAATCAGTTC...AGTTTCACAATCACTTCTGAATGTAGATGGTATAGCCACAGACAAATTATGGTA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029270.10
ENSMUST00000196316.2
CDS-3UTR CCA 90 bp AGATTTCCAAATCAGTTTATTCTCAATATCTTGACAGTTGGCAGCACCAATGTTAAACTCTGCTACTTCTaGGGGGTATATTTCTTCAAA +
Preference number: 4 (lower is better)
Translates to: RFPNQFILNILTVGSTNVKLCYF*GVYFFK
Trigger: TTTGAAGAAATATACCCCCCAGAAGTAGCAGAGTTT...AACATTGGTGCTGCCAACTGTCAAGATATTGAGAATAAACTGATTTGGAAATCT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029270.10
ENSMUST00000196316.2
3UTR CAA 72 bp TGTCTACTTTTGGTTATTTATGAACAAGTCAGCAGTTaGGTTTGGTTGCTTAGAATAATCAATCAATGCCAG +
Preference number: 4 (lower is better)
Translates to: CLLLVIYEQVSS*VWLLRIINQCQ
Trigger: CTGGCATTGATTGATTATTCTAAGCAACCAAACCAAACTGCTGACTTGTTCATAAATAACCAAAAGTAGACA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029270.10
CDS GCA 90 bp TGCTGCGGCGCGGGTCCACGCACGTTCCCGGCCTTCAGCACCGCCTaGGCCCGCGGCTGCTGGGCTGGCGCCAGTTTTTCGGGGTTGACA +
Preference number: 5 (lower is better)
Translates to: CCGAGPRTFPAFSTA*ARGCWAGASFSGLT
Trigger: TGTCAACCCCGAAAAACTGGCGCCAGCCCAGCAGCCGCGGGCGCAGGCGGTGCTGAAGGCCGGGAACGTGCGTGGACCCGCGCCGCAGCA
72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029270.10
ENSMUST00000147380.2
CDS TCA 90 bp CCGCCTGCGCCCGCGGCTGCTGGGCTGGCGCCAGTTTTTCGGGGTTaGCATTCTCTTGGTCTTCCTGATGCAGCGAGAGCAGGGCTGAGC +
Preference number: 5 (lower is better)
Translates to: PPAPAAAGLAPVFRG*HSLGLPDAARAGLS
Trigger: GCTCAGCCCTGCTCTCGCTGCATCAGGAAGACCAAGAGAATGTCAACCCCGAAAAACTGGCGCCAGCCCAGCAGCCGCGGGCGCAGGCGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029270.10
ENSMUST00000147380.2
CDS-3UTR CAA 90 bp CTCCGGGCAGTAGAGCTTGGGAGCTCCCTTAGCCTGGAGATGGGAGCGTTAGGATTAACGTTCACTGGCTaGTCTTCTAAGACAATAGAC +
Preference number: 5 (lower is better)
Translates to: LRAVELGSSLSLEMGALGLTFTG*SSKTID
Trigger: GTCTATTGTCTTAGAAGACAAGCCAGTGAACGTTAA...TCCTAACGCTCCCATCTCCAGGCTAAGGGAGCTCCCAAGCTCTACTGCCCGGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029270.10
CDS GCA 90 bp GCAGGCTGTTTACTGACTGCTTTCCATGAAGGACCAGCAGTGACATaGTCATCGTTTATAGGAAGGTCCTTAAGAGGAGCAACCCGTCGA +
Preference number: 5 (lower is better)
Translates to: AGCLLTAFHEGPAVT*SSFIGRSLRGATRR
Trigger: TCGACGGGTTGCTCCTCTTAAGGACCTTCCTATAAACGATGAGCATGTCACTGCTGGTCCTTCATGGAAAGCAGTCAGTAAACAGCCTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029270.10
ENSMUST00000147380.2
CDS-3UTR CAA 90 bp ACTTACTTAGAACAGGGTAAGATTCGGAAAGAGTGTCAGCCTCCGGGCAGTAGATTTCAACCTTACAGTTaGCAGGCTGCAGGTGCAGGA +
Preference number: 5 (lower is better)
Translates to: TYLEQGKIRKECQPPGSRFQPYS*QAAGAG
Trigger: TCCTGCACCTGCAGCCTGCAAACTGTAAGGTTGAAA...TCTACTGCCCGGAGGCTGACACTCTTTCCGAATCTTACCCTGTTCTAAGTAAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029270.10
CDS GCA 90 bp ACACTCTGTTTCTTTAAGCTCAGCTGGCCTCTTCTGAGTCTCTTCTaGTTCATCCACATGAATGGTGAAGGCAGGCTGTTTACTGACTGC +
Preference number: 5 (lower is better)
Translates to: TLCFFKLSWPLLSLF*FIHMNGEGRLFTDC
Trigger: GCAGTCAGTAAACAGCCTGCCTTCACCATTCATGTGGATGAAGCAGAAGAGACTCAGAAGAGGCCAGCTGAGCTTAAAGAAACAGAGTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029270.10
ENSMUST00000147380.2
CDS TCA 90 bp ATCCACATGAATGGTGAAGGCAGGCTGTTTACTGACTGCTTTCCATaGAGGACCAGCAGTGACATGCTCATCGTTTATAGGAAGGTCCTT +
Preference number: 5 (lower is better)
Translates to: IHMNGEGRLFTDCFP*RTSSDMLIVYRKVL
Trigger: AAGGACCTTCCTATAAACGATGAGCATGTCACTGCTGGTCCTTCATGGAAAGCAGTCAGTAAACAGCCTGCCTTCACCATTCATGTGGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029270.10
ENSMUST00000147380.2
CDS CCA 90 bp ATTAAAAGCCAGGGCATCTTCACACTCTGTTTCTTTAAGCTCAGCTaGCCTCTTCTGAGTCTCTTCTGCTTCATCCACATGAATGGTGAA +
Preference number: 5 (lower is better)
Translates to: IKSQGIFTLCFFKLS*PLLSLFCFIHMNGE
Trigger: TTCACCATTCATGTGGATGAAGCAGAAGAGACTCAGAAGAGGCCAGCTGAGCTTAAAGAAACAGAGTGTGAAGATGCCCTGGCTTTTAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029270.10
ENSMUST00000147380.2
CDS-3UTR CAA 90 bp TGTCTGTGGCTATACCATCTACATTCAGAAGTGATTGTGAAACTAAAACCCGACTTTCAACCTTACAGTTaGCAGGCTGCAGGTGCAGGA +
Preference number: 5 (lower is better)
Translates to: CLWLYHLHSEVIVKLKPDFQPYS*QAAGAG
Trigger: TCCTGCACCTGCAGCCTGCAAACTGTAAGGTTGAAA...GTCGGGTTTTAGTTTCACAATCACTTCTGAATGTAGATGGTATAGCCACAGACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029270.10
ENSMUST00000196316.2
CDS-3UTR CAA 90 bp TGTCTGTGGCTATACCATCTACATTCAGAAGTGATTGTGAAACTAAAACCCGACCAAAACTGCCATCCATaGGATAGTCAAGAGGTGTCA +
Preference number: 5 (lower is better)
Translates to: CLWLYHLHSEVIVKLKPDQNCHP*DSQEVS
Trigger: TGACACCTCTTGACTATCCAATGGATGGCAGTTTTG...GTCGGGTTTTAGTTTCACAATCACTTCTGAATGTAGATGGTATAGCCACAGACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029270.10
ENSMUST00000147380.2
CDS-3UTR CAA 90 bp AGATTTCCAAATCAGTTTATTCTCAATATCTTGACAGTTGGCAGCACCAATGTTCAAAACTGCCATCCATaGGATAGTCAAGAGGTGTCA +
Preference number: 5 (lower is better)
Translates to: RFPNQFILNILTVGSTNVQNCHP*DSQEVS
Trigger: TGACACCTCTTGACTATCCAATGGATGGCAGTTTTG...AACATTGGTGCTGCCAACTGTCAAGATATTGAGAATAAACTGATTTGGAAATCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029270.10
ENSMUST00000147380.2
CDS-3UTR CAA 90 bp TACCATAATTTGTCTGTGGCTATACCATCTACATTCAGAAGTGATTGTGAAACTGGAACTGATTTACTGTaGGTGCAGCCAAGTCAAAAG +
Preference number: 5 (lower is better)
Translates to: YHNLSVAIPSTFRSDCETGTDLL*VQPSQK
Trigger: CTTTTGACTTGGCTGCACCAACAGTAAATCAGTTCC...AGTTTCACAATCACTTCTGAATGTAGATGGTATAGCCACAGACAAATTATGGTA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029270.10
ENSMUST00000196316.2
CDS-3UTR CAA 90 bp AAGATTTCCAAATCAGTTTATTCTCAATATCTTGACAGTTGGCAGCACCAATGTGGAACTGATTTACTGTaGGTGCAGCCAAGTCAAAAG +
Preference number: 5 (lower is better)
Translates to: KISKSVYSQYLDSWQHQCGTDLL*VQPSQK
Trigger: CTTTTGACTTGGCTGCACCAACAGTAAATCAGTTCC...ACATTGGTGCTGCCAACTGTCAAGATATTGAGAATAAACTGATTTGGAAATCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029270.10
ENSMUST00000196316.2
CDS-3UTR CAA 90 bp AAGATTTCCAAATCAGTTTATTCTCAATATCTTGACAGTTGGCAGCACCAATGTTTAACGTTCACTGGCTaGTCTTCTAAGACAATAGAC +
Preference number: 5 (lower is better)
Translates to: KISKSVYSQYLDSWQHQCLTFTG*SSKTID
Trigger: GTCTATTGTCTTAGAAGACAAGCCAGTGAACGTTAA...ACATTGGTGCTGCCAACTGTCAAGATATTGAGAATAAACTGATTTGGAAATCTT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029270.10
ENSMUST00000196316.2
CDS-3UTR CAA 90 bp AATGGATACCATAATTTGTCTGTGGCTATACCATCTACATTCAGAAGTGATTGTCGTGTGAATGTCTTCTaGATAGTCAGGTACTTCATT +
Preference number: 5 (lower is better)
Translates to: NGYHNLSVAIPSTFRSDCRVNVF*IVRYFI
Trigger: AATGAAGTACCTGACTATCAAGAAGACATTCACACG...ACAATCACTTCTGAATGTAGATGGTATAGCCACAGACAAATTATGGTATCCATT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029270.10
ENSMUST00000196316.2
CDS-3UTR CAA 90 bp TATGCTTTGAATAAACTTTCTGGAAAACTTTTCTGTTGCACAAGCTTCCCAACTGTTCTCCCAAAAACATaGCTAAGCTTTCAACCTTAC +
Preference number: 5 (lower is better)
Translates to: YALNKLSGKLFCCTSFPTVLPKT*LSFQPY
Trigger: GTAAGGTTGAAAGCTTAGCAATGTTTTTGGGAGAAC...AGTTGGGAAGCTTGTGCAACAGAAAAGTTTTCCAGAAAGTTTATTCAAAGCATA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000029270.10
CDS-3UTR CAA 90 bp AGATTTCCAAATCAGTTTATTCTCAATATCTTGACAGTTGGCAGCACCAATGTTGTTCTCCCAAAAACATaGCTAAGCTTTCAACCTTAC +
Preference number: 5 (lower is better)
Translates to: RFPNQFILNILTVGSTNVVLPKT*LSFQPY
Trigger: GTAAGGTTGAAAGCTTAGCAATGTTTTTGGGAGAAC...AACATTGGTGCTGCCAACTGTCAAGATATTGAGAATAAACTGATTTGGAAATCT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029270.10
ENSMUST00000196316.2
CDS GCA 72 bp GCGGGTCCACGCACGTTCCCGGCCTTCAGCACCGCCTaGGCCCGCGGCTGCTGGGCTGGCGCCAGTTTTTCG +
Preference number: 6 (lower is better)
Translates to: AGPRTFPAFSTA*ARGCWAGASFS
Trigger: CGAAAAACTGGCGCCAGCCCAGCAGCCGCGGGCGCAGGCGGTGCTGAAGGCCGGGAACGTGCGTGGACCCGC
74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029270.10
ENSMUST00000147380.2
CDS GCA 72 bp ACGTTCCCGGCCTTCAGCACCGCCTGCGCCCGCGGCTaGTGGGCTGGCGCCAGTTTTTCGGGGTTGACATTC +
Preference number: 6 (lower is better)
Translates to: TFPAFSTACARG*WAGASFSGLTF
Trigger: GAATGTCAACCCCGAAAAACTGGCGCCAGCCCAGCAGCCGCGGGCGCAGGCGGTGCTGAAGGCCGGGAACGT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029270.10
ENSMUST00000147380.2
CDS TCA 72 bp ATTCTCTTGGTCTTCCTGATGCAGCGAGAGCAGGGCTaGGCCCGCATCGCGACCCGAATGCCTCGAGGTGCC +
Preference number: 6 (lower is better)
Translates to: ILLVFLMQREQG*ARIATRMPRGA
Trigger: GGCACCTCGAGGCATTCGGGTCGCGATGCGGGCTCAGCCCTGCTCTCGCTGCATCAGGAAGACCAAGAGAAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029270.10
ENSMUST00000147380.2
CDS TCA 72 bp CCCGCGGCTGCTGGGCTGGCGCCAGTTTTTCGGGGTTaGCATTCTCTTGGTCTTCCTGATGCAGCGAGAGCA +
Preference number: 6 (lower is better)
Translates to: PAAAGLAPVFRG*HSLGLPDAARA
Trigger: TGCTCTCGCTGCATCAGGAAGACCAAGAGAATGTCAACCCCGAAAAACTGGCGCCAGCCCAGCAGCCGCGGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029270.10
ENSMUST00000147380.2
CDS TCA 72 bp GCCAGTTTTTCGGGGTTGACATTCTCTTGGTCTTCCTaGTGCAGCGAGAGCAGGGCTGAGCCCGCATCGCGA +
Preference number: 6 (lower is better)
Translates to: ASFSGLTFSWSS*CSESRAEPASR
Trigger: TCGCGATGCGGGCTCAGCCCTGCTCTCGCTGCATCAGGAAGACCAAGAGAATGTCAACCCCGAAAAACTGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029270.10
ENSMUST00000147380.2
CDS TCA 72 bp AATGGTGAAGGCAGGCTGTTTACTGACTGCTTTCCATaGAGGACCAGCAGTGACATGCTCATCGTTTATAGG +
Preference number: 6 (lower is better)
Translates to: NGEGRLFTDCFP*RTSSDMLIVYR
Trigger: CCTATAAACGATGAGCATGTCACTGCTGGTCCTTCATGGAAAGCAGTCAGTAAACAGCCTGCCTTCACCATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029270.10
ENSMUST00000147380.2
CDS CAA 72 bp TCCATGTGTCTGACCTACAAGCAAAACTGCCATCCATaGGATAGTCAAGAGGTGTCAGTGGTTTTCTTGCTC +
Preference number: 6 (lower is better)
Translates to: SMCLTYKQNCHP*DSQEVSVVFLL
Trigger: GAGCAAGAAAACCACTGACACCTCTTGACTATCCAATGGATGGCAGTTTTGCTTGTAGGTCAGACACATGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000147380.2
CDS GCA 72 bp ATTTTGCCTTCCATGTGTCTGACCTACAAGCAAAACTaGCATCCATTGGATAGTCAAGAGGTGTCAGTGGTT +
Preference number: 6 (lower is better)
Translates to: ILPSMCLTYKQN*HPLDSQEVSVV
Trigger: AACCACTGACACCTCTTGACTATCCAATGGATGGCAGTTTTGCTTGTAGGTCAGACACATGGAAGGCAAAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000147380.2