Pregenerated sensors for CCNA2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027715Ensembl transcript IDs: ENSMUST00000029270.10, ENSMUST00000147380.2, ENSMUST00000196316.2
Found 121 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TGTGACTGTGTAGAGAGCCAAGTGGAAGGCAGCTCCAGCAATGAGTaGAGGCAGGTACTTAAGGTACGGGTCAGCATCTATCAAACTCAG | + |
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Preference number: 1 (lower is better) Translates to: CDCVESQVEGSSSNE*RQVLKVRVSIYQTQ Trigger: CTGAGTTTGATAGATGCTGACCCGTACCTTAAGTACCTGCCTTCACTCATTGCTGGAGCTGCCTTCCACTTGGCTCTCTACACAGTCACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147380.2 |
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| 3UTR TCA 90 bp | TCTTCAAACTTCGAAGCTAGCAGCATAGCAGCCGTGCCTACAAGCTaGAGCTTCCCTCTTAACACAGACATGGAGGAGAGGAATCTATCA | + |
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Preference number: 1 (lower is better) Translates to: SSNFEASSIAAVPTS*SFPLNTDMEERNLS Trigger: TGATAGATTCCTCTCCTCCATGTCTGTGTTAAGAGGGAAGCTTCAGCTTGTAGGCACGGCTGCTATGCTGCTAGCTTCGAAGTTTGAAGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147380.2 |
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| 3UTR TCA 90 bp | TTACAGTTTGCAGGCTGCAGGTGCAGGAAGTACTGGGTAAGGAACTaGTTTACTGTTGGTGCAGCCAAGTCAAAAGCAAGGACTTTCAAT | + |
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Preference number: 1 (lower is better) Translates to: LQFAGCRCRKYWVRN*FTVGAAKSKARTFN Trigger: ATTGAAAGTCCTTGCTTTTGACTTGGCTGCACCAACAGTAAATCAGTTCCTTACCCAGTACTTCCTGCACCTGCAGCCTGCAAACTGTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147380.2 |
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| 3UTR CCA 90 bp | AGAAGTGATTGTGAAACTAAAACCCGACATAAAAACTGTACAGCATaGACTCCGAGCGACTCCTGTTTCAAACAAAGCCGGCAGTCTTTC | + |
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Preference number: 1 (lower is better) Translates to: RSDCETKTRHKNCTA*TPSDSCFKQSRQSF Trigger: GAAAGACTGCCGGCTTTGTTTGAAACAGGAGTCGCTCGGAGTCCATGCTGTACAGTTTTTATGTCGGGTTTTAGTTTCACAATCACTTCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000029270.10 ENSMUST00000147380.2 ENSMUST00000196316.2 |
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| 3UTR TCA 90 bp | AAAGCCGGCAGTCTTTCACTCACACACTTAGTGTCTCTGGTGGGTTaGGAAGAGAAACACTGTGATATTTTGAATGCTTGTACTTTTCCC | + |
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Preference number: 1 (lower is better) Translates to: KAGSLSLTHLVSLVG*EEKHCDILNACTFP Trigger: GGGAAAAGTACAAGCATTCAAAATATCACAGTGTTTCTCTTCTCAACCCACCAGAGACACTAAGTGTGTGAGTGAAAGACTGCCGGCTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000147380.2 |
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| 3UTR CCA 90 bp | TTTCTGGCCTCTTTCAAATATACATTAAAAGCTGGTTCTATAAAATaGGGCACCTTTCAGAGTCCCAGTGACCCAATCCAGGACAGATGG | + |
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Preference number: 1 (lower is better) Translates to: FLASFKYTLKAGSIK*GTFQSPSDPIQDRW Trigger: CCATCTGTCCTGGATTGGGTCACTGGGACTCTGAAAGGTGCCCCATTTTATAGAACCAGCTTTTAATGTATATTTGAAAGAGGCCAGAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029270.10 |
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| 3UTR CCA 90 bp | GGAAAAGGAAGAAGAAGAAGAGAACTGCTAACTAAGCTAAAGTGGTaGATCTCTGTGTGTGTGTGTGTGTATACATACTCAGTGCTAACA | + |
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Preference number: 1 (lower is better) Translates to: GKGRRRRELLTKLKW*ISVCVCVYTYSVLT Trigger: TGTTAGCACTGAGTATGTATACACACACACACACACAGAGATCCACCACTTTAGCTTAGTTAGCAGTTCTCTTCTTCTTCTTCCTTTTCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029270.10 |
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| 3UTR-3UTR TCA 90 bp | CAGGTGCAGGAAGTACTGGGTAAGGAACTGATTTACTGTTGGTGCAGCCAAGTCCTGGTCTCCATGCAGTaGTGTCATAGCAACCGCAGA | + |
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Preference number: 2 (lower is better) Translates to: QVQEVLGKELIYCWCSQVLVSMQ*CHSNRR Trigger: TCTGCGGTTGCTATGACATCACTGCATGGAGACCAG...GACTTGGCTGCACCAACAGTAAATCAGTTCCTTACCCAGTACTTCCTGCACCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147380.2 |
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| 3UTR-3UTR GCA 90 bp | GTTTCAAACAAAGCCGGCAGTCTTTCACTCACACACTTAGTGTCTCTGGTGGGTTTTGCAGGCTGCAGGTaGAGGAAGTACTGGGTAAGG | + |
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Preference number: 2 (lower is better) Translates to: VSNKAGSLSLTHLVSLVGFAGCR*RKYWVR Trigger: CCTTACCCAGTACTTCCTGCACCTGCAGCCTGCAAA...ACCCACCAGAGACACTAAGTGTGTGAGTGAAAGACTGCCGGCTTTGTTTGAAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147380.2 |
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| 3UTR-3UTR GCA 90 bp | CGCTTTGAGGTAGGTCTGGTGAAGGTCCACAAGACAAGGCTTAAGACTCTCCAGTTCAACCTTACAGTTTaGAGGCTGCAGGTGCAGGAA | + |
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Preference number: 2 (lower is better) Translates to: RFEVGLVKVHKTRLKTLQFNLTV*RLQVQE Trigger: TTCCTGCACCTGCAGCCTGCAAACTGTAAGGTTGAA...CTGGAGAGTCTTAAGCCTTGTCTTGTGGACCTTCACCAGACCTACCTCAAAGCG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147380.2 |
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| 3UTR-3UTR CCA 90 bp | AGCCGGCAGTCTTTCACTCACACACTTAGTGTCTCTGGTGGGTTGAGAAGAGAAGCTGTTAGTGATGTCTaGCTGCCTCTTCATGTAACC | + |
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Preference number: 2 (lower is better) Translates to: SRQSFTHTLSVSGGLRREAVSDV*LPLHVT Trigger: GGTTACATGAAGAGGCAGCCAGACATCACTAACAGC...TTCTCTTCTCAACCCACCAGAGACACTAAGTGTGTGAGTGAAAGACTGCCGGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147380.2 |
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| 3UTR-3UTR GCA 90 bp | GACTCCTGTTTCAAACAAAGCCGGCAGTCTTTCACTCACACACTTAGTGTCTCTTTACAGTTTGCAGGCTaGAGGTGCAGGAAGTACTGG | + |
|
Preference number: 2 (lower is better) Translates to: DSCFKQSRQSFTHTLSVSLQFAG*RCRKYW Trigger: CCAGTACTTCCTGCACCTGCAGCCTGCAAACTGTAA...AGAGACACTAAGTGTGTGAGTGAAAGACTGCCGGCTTTGTTTGAAACAGGAGTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147380.2 |
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| 3UTR-3UTR TCA 90 bp | CAGGTGCAGGAAGTACTGGGTAAGGAACTGATTTACTGTTGGTGCAGCCAAGTCTTATTCTCAATATCTTaGCAGTTGGCAGCACCAATG | + |
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Preference number: 2 (lower is better) Translates to: QVQEVLGKELIYCWCSQVLFSIS*QLAAPM Trigger: CATTGGTGCTGCCAACTGTCAAGATATTGAGAATAA...GACTTGGCTGCACCAACAGTAAATCAGTTCCTTACCCAGTACTTCCTGCACCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147380.2 |
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| 3UTR-3UTR TCA 90 bp | TACAGCATGGACTCCGAGCGACTCCTGTTTCAAACAAAGCCGGCAGTCTTTCACACAGATGGGATACAGTaGGCTGTTATATTACTTCAT | + |
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Preference number: 2 (lower is better) Translates to: YSMDSERLLFQTKPAVFHTDGIQ*AVILLH Trigger: ATGAAGTAATATAACAGCTCACTGTATCCCATCTGT...GTGAAAGACTGCCGGCTTTGTTTGAAACAGGAGTCGCTCGGAGTCCATGCTGTA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029270.10 |
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| 3UTR-3UTR GCA 90 bp | GACTCCTGTTTCAAACAAAGCCGGCAGTCTTTCACTCACACACTTAGTGTCTCTACTTTCAATACTAGGTaGTCCATTCTCAGAACCTGC | + |
|
Preference number: 2 (lower is better) Translates to: DSCFKQSRQSFTHTLSVSTFNTR*SILRTC Trigger: GCAGGTTCTGAGAATGGAGCACCTAGTATTGAAAGT...AGAGACACTAAGTGTGTGAGTGAAAGACTGCCGGCTTTGTTTGAAACAGGAGTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147380.2 |
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| 3UTR-3UTR CCA 90 bp | TACAGCATGGACTCCGAGCGACTCCTGTTTCAAACAAAGCCGGCAGTCTTTCACACCATAATTTGTCTGTaGCTATACCATCTACATTCA | + |
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Preference number: 2 (lower is better) Translates to: YSMDSERLLFQTKPAVFHTIICL*LYHLHS Trigger: TGAATGTAGATGGTATAGCCACAGACAAATTATGGT...GTGAAAGACTGCCGGCTTTGTTTGAAACAGGAGTCGCTCGGAGTCCATGCTGTA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029270.10 ENSMUST00000147380.2 ENSMUST00000196316.2 |
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| 3UTR-3UTR GCA 90 bp | TGTCTGTGGCTATACCATCTACATTCAGAAGTGATTGTGAAACTAAAACCCGACTATCTCTGGTCTCCATaGAGTGATGTCATAGCAACC | + |
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Preference number: 2 (lower is better) Translates to: CLWLYHLHSEVIVKLKPDYLWSP*SDVIAT Trigger: GGTTGCTATGACATCACTGCATGGAGACCAGAGATA...GTCGGGTTTTAGTTTCACAATCACTTCTGAATGTAGATGGTATAGCCACAGACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147380.2 |
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| 3UTR-3UTR CCA 90 bp | GGTAAGGAACTGATTTACTGTTGGTGCAGCCAAGTCAAAAGCAAGGACTTTCAACTCTTAACACAGACATaGAGGAGAGGAATCTATCAA | + |
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Preference number: 2 (lower is better) Translates to: GKELIYCWCSQVKSKDFQLLTQT*RRGIYQ Trigger: TTGATAGATTCCTCTCCTCCATGTCTGTGTTAAGAG...TTGAAAGTCCTTGCTTTTGACTTGGCTGCACCAACAGTAAATCAGTTCCTTACC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147380.2 |
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| 3UTR-3UTR CCA 90 bp | TGGCTATACCATCTACATTCAGAAGTGATTGTGAAACTAAAACCCGACATAAAATCCCGTATTGACTGTTaGGCATGTTGTGGCGCTTTG | + |
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Preference number: 2 (lower is better) Translates to: WLYHLHSEVIVKLKPDIKSRIDC*ACCGAL Trigger: CAAAGCGCCACAACATGCCCAACAGTCAATACGGGA...TTTTATGTCGGGTTTTAGTTTCACAATCACTTCTGAATGTAGATGGTATAGCCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000147380.2 |
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| 3UTR-3UTR CCA 90 bp | GATTGTGAAACTAAAACCCGACATAAAAACTGTACAGCATGGACTCCGAGCGACACCATAATTTGTCTGTaGCTATACCATCTACATTCA | + |
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Preference number: 2 (lower is better) Translates to: DCETKTRHKNCTAWTPSDTIICL*LYHLHS Trigger: TGAATGTAGATGGTATAGCCACAGACAAATTATGGT...GTCGCTCGGAGTCCATGCTGTACAGTTTTTATGTCGGGTTTTAGTTTCACAATC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000029270.10 ENSMUST00000147380.2 ENSMUST00000196316.2 |
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| 3UTR-3UTR TCA 90 bp | TGGCTATACCATCTACATTCAGAAGTGATTGTGAAACTAAAACCCGACATAAAATTATTCTCAATATCTTaGCAGTTGGCAGCACCAATG | + |
|
Preference number: 2 (lower is better) Translates to: WLYHLHSEVIVKLKPDIKLFSIS*QLAAPM Trigger: CATTGGTGCTGCCAACTGTCAAGATATTGAGAATAA...TTTTATGTCGGGTTTTAGTTTCACAATCACTTCTGAATGTAGATGGTATAGCCA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000029270.10 ENSMUST00000147380.2 ENSMUST00000196316.2 |
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| 3UTR-3UTR CCA 90 bp | ACTGTAACATCTGAGAGCCGAATGAGTTCTGCTACATTGAAAACAGTTTGTCTAGTCAGCAGTTTGGTTTaGTTGCTTAGAATAATCAAT | + |
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Preference number: 2 (lower is better) Translates to: TVTSESRMSSATLKTVCLVSSLV*LLRIIN Trigger: ATTGATTATTCTAAGCAACCAAACCAAACTGCTGAC...TAGACAAACTGTTTTCAATGTAGCAGAACTCATTCGGCTCTCAGATGTTACAGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029270.10 |
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| 3UTR TCA 72 bp | TTCGAAGCTAGCAGCATAGCAGCCGTGCCTACAAGCTaGAGCTTCCCTCTTAACACAGACATGGAGGAGAGG | + |
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Preference number: 3 (lower is better) Translates to: FEASSIAAVPTS*SFPLNTDMEER Trigger: CCTCTCCTCCATGTCTGTGTTAAGAGGGAAGCTTCAGCTTGTAGGCACGGCTGCTATGCTGCTAGCTTCGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147380.2 |
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| 3UTR-3UTR CAA 90 bp | CTCCGGGCAGTAGAGCTTGGGAGCTCCCTTAGCCTGGAGATGGGAGCGTTAGGAAATGGATACCATAATTaGTCTGTGGCTATACCATCT | + |
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Preference number: 3 (lower is better) Translates to: LRAVELGSSLSLEMGALGNGYHN*SVAIPS Trigger: AGATGGTATAGCCACAGACAAATTATGGTATCCATT...TCCTAACGCTCCCATCTCCAGGCTAAGGGAGCTCCCAAGCTCTACTGCCCGGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029270.10 |
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| 3UTR TCA 72 bp | GCAGGCTGCAGGTGCAGGAAGTACTGGGTAAGGAACTaGTTTACTGTTGGTGCAGCCAAGTCAAAAGCAAGG | + |
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Preference number: 3 (lower is better) Translates to: AGCRCRKYWVRN*FTVGAAKSKAR Trigger: CCTTGCTTTTGACTTGGCTGCACCAACAGTAAATCAGTTCCTTACCCAGTACTTCCTGCACCTGCAGCCTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147380.2 |
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| 3UTR TCA 72 bp | TTTCCCGTATTGACTGTTGGGCATGTTGTGGCGCTTTaGGGTAGGTCTGGTGAAGGTCCACAAGACAAGGCT | + |
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Preference number: 3 (lower is better) Translates to: FPVLTVGHVVAL*GRSGEGPQDKA Trigger: AGCCTTGTCTTGTGGACCTTCACCAGACCTACCTCAAAGCGCCACAACATGCCCAACAGTCAATACGGGAAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147380.2 |
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| 3UTR TCA 72 bp | TGGTTCTATAAAATGGGGCACCTTTCAGAGTCCCAGTaGCCCAATCCAGGACAGATGGGATACAGTGAGCTG | + |
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Preference number: 3 (lower is better) Translates to: WFYKMGHLSESQ*PNPGQMGYSEL Trigger: CAGCTCACTGTATCCCATCTGTCCTGGATTGGGTCACTGGGACTCTGAAAGGTGCCCCATTTTATAGAACCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029270.10 |
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| 3UTR TCA 72 bp | GTCCCAGTGACCCAATCCAGGACAGATGGGATACAGTaGGCTGTTATATTACTTCATTCACAGAGCTCAGAC | + |
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Preference number: 3 (lower is better) Translates to: VPVTQSRTDGIQ*AVILLHSQSSD Trigger: GTCTGAGCTCTGTGAATGAAGTAATATAACAGCTCACTGTATCCCATCTGTCCTGGATTGGGTCACTGGGAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029270.10 |
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| 3UTR CCA 72 bp | TCATGGGCAGTCCTGGTAGCAAGAATTAGAGCATTCTaGCCTACATGTCCTCTGGGGAAAAAGGAAAGAAAG | + |
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Preference number: 3 (lower is better) Translates to: SWAVLVARIRAF*PTCPLGKKERK Trigger: CTTTCTTTCCTTTTTCCCCAGAGGACATGTAGGCCAGAATGCTCTAATTCTTGCTACCAGGACTGCCCATGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029270.10 |
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| 3UTR-3UTR CAA 90 bp | CAGGTGCAGGAAGTACTGGGTAAGGAACTGATTTACTGTTGGTGCAGCCAAGTCTTAACGTTCACTGGCTaGTCTTCTAAGACAATAGAC | + |
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Preference number: 3 (lower is better) Translates to: QVQEVLGKELIYCWCSQVLTFTG*SSKTID Trigger: GTCTATTGTCTTAGAAGACAAGCCAGTGAACGTTAA...GACTTGGCTGCACCAACAGTAAATCAGTTCCTTACCCAGTACTTCCTGCACCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147380.2 |
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| 3UTR CCA 72 bp | TGTGAAACTAAAACCCGACATAAAAACTGTACAGCATaGACTCCGAGCGACTCCTGTTTCAAACAAAGCCGG | + |
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Preference number: 3 (lower is better) Translates to: CETKTRHKNCTA*TPSDSCFKQSR Trigger: CCGGCTTTGTTTGAAACAGGAGTCGCTCGGAGTCCATGCTGTACAGTTTTTATGTCGGGTTTTAGTTTCACA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000029270.10 ENSMUST00000147380.2 ENSMUST00000196316.2 |
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| 3UTR CCA 72 bp | TGCCTACAAGCTGAAGCTTCCCTCTTAACACAGACATaGAGGAGAGGAATCTATCAATGTAGTTCACAGCCA | + |
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Preference number: 3 (lower is better) Translates to: CLQAEASLLTQT*RRGIYQCSSQP Trigger: TGGCTGTGAACTACATTGATAGATTCCTCTCCTCCATGTCTGTGTTAAGAGGGAAGCTTCAGCTTGTAGGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147380.2 |
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| 3UTR-3UTR CAA 90 bp | GATTGTGAAACTAAAACCCGACATAAAAACTGTACAGCATGGACTCCGAGCGACGGAACTGATTTACTGTaGGTGCAGCCAAGTCAAAAG | + |
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Preference number: 3 (lower is better) Translates to: DCETKTRHKNCTAWTPSDGTDLL*VQPSQK Trigger: CTTTTGACTTGGCTGCACCAACAGTAAATCAGTTCC...GTCGCTCGGAGTCCATGCTGTACAGTTTTTATGTCGGGTTTTAGTTTCACAATC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000147380.2 |
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| 3UTR CCA 72 bp | ACCTTTCAGAGTCCCAGTGACCCAATCCAGGACAGATaGGATACAGTGAGCTGTTATATTACTTCATTCACA | + |
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Preference number: 3 (lower is better) Translates to: TFQSPSDPIQDR*DTVSCYITSFT Trigger: TGTGAATGAAGTAATATAACAGCTCACTGTATCCCATCTGTCCTGGATTGGGTCACTGGGACTCTGAAAGGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029270.10 |
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| 3UTR CCA 72 bp | GTGCAGGAAGTACTGGGTAAGGAACTGATTTACTGTTaGTGCAGCCAAGTCAAAAGCAAGGACTTTCAATAC | + |
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Preference number: 3 (lower is better) Translates to: VQEVLGKELIYC*CSQVKSKDFQY Trigger: GTATTGAAAGTCCTTGCTTTTGACTTGGCTGCACCAACAGTAAATCAGTTCCTTACCCAGTACTTCCTGCAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147380.2 |
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| 3UTR-3UTR CAA 90 bp | ACTTACTTAGAACAGGGTAAGATTCGGAAAGAGTGTCAGCCTCCGGGCAGTAGAAATCAATGCCAGAATTaGAAGGTCTTTTTCCCTGAA | + |
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Preference number: 3 (lower is better) Translates to: TYLEQGKIRKECQPPGSRNQCQN*KVFFPE Trigger: TTCAGGGAAAAAGACCTTCAAATTCTGGCATTGATT...TCTACTGCCCGGAGGCTGACACTCTTTCCGAATCTTACCCTGTTCTAAGTAAGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029270.10 |
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| 3UTR-3UTR CAA 90 bp | GACTCCTGTTTCAAACAAAGCCGGCAGTCTTTCACTCACACACTTAGTGTCTCTGTTCTCCCAAAAACATaGCTAAGCTTTCAACCTTAC | + |
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Preference number: 3 (lower is better) Translates to: DSCFKQSRQSFTHTLSVSVLPKT*LSFQPY Trigger: GTAAGGTTGAAAGCTTAGCAATGTTTTTGGGAGAAC...AGAGACACTAAGTGTGTGAGTGAAAGACTGCCGGCTTTGTTTGAAACAGGAGTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000147380.2 |
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| 3UTR CCA 72 bp | GGAAGAAGAAGAAGAGAACTGCTAACTAAGCTAAAGTaGTGGATCTCTGTGTGTGTGTGTGTGTATACATAC | + |
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Preference number: 3 (lower is better) Translates to: GRRRRELLTKLK*WISVCVCVYTY Trigger: GTATGTATACACACACACACACACAGAGATCCACCACTTTAGCTTAGTTAGCAGTTCTCTTCTTCTTCTTCC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029270.10 |
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| 3UTR-3UTR CAA 90 bp | GATTGTGAAACTAAAACCCGACATAAAAACTGTACAGCATGGACTCCGAGCGACAATGGATACCATAATTaGTCTGTGGCTATACCATCT | + |
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Preference number: 3 (lower is better) Translates to: DCETKTRHKNCTAWTPSDNGYHN*SVAIPS Trigger: AGATGGTATAGCCACAGACAAATTATGGTATCCATT...GTCGCTCGGAGTCCATGCTGTACAGTTTTTATGTCGGGTTTTAGTTTCACAATC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000029270.10 ENSMUST00000147380.2 ENSMUST00000196316.2 |
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| 3UTR-3UTR CAA 90 bp | AGCTGTTATATTACTTCATTCACAGAGCTCAGACCAGTGCAAACCAGAAGGCACTTTATTCTCAATATCTaGACAGTTGGCAGCACCAAT | + |
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Preference number: 3 (lower is better) Translates to: SCYITSFTELRPVQTRRHFILNI*TVGSTN Trigger: ATTGGTGCTGCCAACTGTCAAGATATTGAGAATAAA...GTGCCTTCTGGTTTGCACTGGTCTGAGCTCTGTGAATGAAGTAATATAACAGCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029270.10 |
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| 3UTR-3UTR CAA 90 bp | AGGCAGGTACTTAAGGTACGGGTCAGCATCTATCAAACTCAGTTCTCCCAAAAATTTATTCTCAATATCTaGACAGTTGGCAGCACCAAT | + |
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Preference number: 3 (lower is better) Translates to: RQVLKVRVSIYQTQFSQKFILNI*TVGSTN Trigger: ATTGGTGCTGCCAACTGTCAAGATATTGAGAATAAA...TTTTTGGGAGAACTGAGTTTGATAGATGCTGACCCGTACCTTAAGTACCTGCCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000147380.2 |
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| 3UTR-3UTR CAA 90 bp | CACTGTGATATTTTGAATGCTTGTACTTTTCCCGTATTGACTGTTGGGCATGTTCGTGTGAATGTCTTCTaGATAGTCAGGTACTTCATT | + |
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Preference number: 3 (lower is better) Translates to: HCDILNACTFPVLTVGHVRVNVF*IVRYFI Trigger: AATGAAGTACCTGACTATCAAGAAGACATTCACACG...AACATGCCCAACAGTCAATACGGGAAAAGTACAAGCATTCAAAATATCACAGTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000147380.2 |
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| 3UTR-3UTR CAA 90 bp | CACTGTGATATTTTGAATGCTTGTACTTTTCCCGTATTGACTGTTGGGCATGTTAATGGATACCATAATTaGTCTGTGGCTATACCATCT | + |
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Preference number: 3 (lower is better) Translates to: HCDILNACTFPVLTVGHVNGYHN*SVAIPS Trigger: AGATGGTATAGCCACAGACAAATTATGGTATCCATT...AACATGCCCAACAGTCAATACGGGAAAAGTACAAGCATTCAAAATATCACAGTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000147380.2 |
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| CDS-3UTR GCA 90 bp | GTGAAGGTCCACAAGACAAGGCTTAAGACTCTCCAGGGTATATCCAGTCTGTTGGCCTTCAGCACCGCCTaGGCCCGCGGCTGCTGGGCT | + |
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Preference number: 4 (lower is better) Translates to: VKVHKTRLKTLQGISSLLAFSTA*ARGCWA Trigger: AGCCCAGCAGCCGCGGGCGCAGGCGGTGCTGAAGGC...CAACAGACTGGATATACCCTGGAGAGTCTTAAGCCTTGTCTTGTGGACCTTCAC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147380.2 |
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| CDS-3UTR TCA 90 bp | CTCCGGGCAGTAGAGCTTGGGAGCTCCCTTAGCCTGGAGATGGGAGCGTTAGGACATGTTGTGGCGCTTTaGGGTAGGTCTGGTGAAGGT | + |
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Preference number: 4 (lower is better) Translates to: LRAVELGSSLSLEMGALGHVVAL*GRSGEG Trigger: ACCTTCACCAGACCTACCTCAAAGCGCCACAACATG...TCCTAACGCTCCCATCTCCAGGCTAAGGGAGCTCCCAAGCTCTACTGCCCGGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029270.10 |
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| CDS-3UTR CCA 90 bp | CAGGTGCAGGAAGTACTGGGTAAGGAACTGATTTACTGTTGGTGCAGCCAAGTCTGCGCCCGCGGCTGCTaGGCTGGCGCCAGTTTTTCG | + |
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Preference number: 4 (lower is better) Translates to: QVQEVLGKELIYCWCSQVCARGC*AGASFS Trigger: CGAAAAACTGGCGCCAGCCCAGCAGCCGCGGGCGCA...GACTTGGCTGCACCAACAGTAAATCAGTTCCTTACCCAGTACTTCCTGCACCTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000147380.2 |
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| CDS-3UTR TCA 90 bp | AAGAGTGTCAGCCTCCGGGCAGTAGAGCTTGGGAGCTCCCTTAGCCTGGAGATGAGGCAGGCTGTTTACTaGCTGCTTTCCATGAAGGAC | + |
|
Preference number: 4 (lower is better) Translates to: KSVSLRAVELGSSLSLEMRQAVY*LLSMKD Trigger: GTCCTTCATGGAAAGCAGTCAGTAAACAGCCTGCCT...CATCTCCAGGCTAAGGGAGCTCCCAAGCTCTACTGCCCGGAGGCTGACACTCTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029270.10 |
||
| CDS-3UTR TCA 90 bp | CTCCGGGCAGTAGAGCTTGGGAGCTCCCTTAGCCTGGAGATGGGAGCGTTAGGAAGCTCCAGCAATGAGTaGAGGCAGGTACTTAAGGTA | + |
|
Preference number: 4 (lower is better) Translates to: LRAVELGSSLSLEMGALGSSSNE*RQVLKV Trigger: TACCTTAAGTACCTGCCTTCACTCATTGCTGGAGCT...TCCTAACGCTCCCATCTCCAGGCTAAGGGAGCTCCCAAGCTCTACTGCCCGGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029270.10 |
||
| CDS-3UTR CCA 90 bp | GCTGTTATATTACTTCATTCACAGAGCTCAGACCAGTGCAAACCAGAAGGCACCTGCGCCCGCGGCTGCTaGGCTGGCGCCAGTTTTTCG | + |
|
Preference number: 4 (lower is better) Translates to: AVILLHSQSSDQCKPEGTCARGC*AGASFS Trigger: CGAAAAACTGGCGCCAGCCCAGCAGCCGCGGGCGCA...GGTGCCTTCTGGTTTGCACTGGTCTGAGCTCTGTGAATGAAGTAATATAACAGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029270.10 |
||
| CDS-3UTR GCA 90 bp | TGTCTGTGGCTATACCATCTACATTCAGAAGTGATTGTGAAACTAAAACCCGACGCCTTCAGCACCGCCTaGGCCCGCGGCTGCTGGGCT | + |
|
Preference number: 4 (lower is better) Translates to: CLWLYHLHSEVIVKLKPDAFSTA*ARGCWA Trigger: AGCCCAGCAGCCGCGGGCGCAGGCGGTGCTGAAGGC...GTCGGGTTTTAGTTTCACAATCACTTCTGAATGTAGATGGTATAGCCACAGACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029270.10 ENSMUST00000147380.2 |
||
| CDS-3UTR TCA 90 bp | TACAGCATGGACTCCGAGCGACTCCTGTTTCAAACAAAGCCGGCAGTCTTTCACAGTCTGTTGTGCCAATaGCTCAGGCCAGCTCTGTCC | + |
|
Preference number: 4 (lower is better) Translates to: YSMDSERLLFQTKPAVFHSLLCQ*LRPALS Trigger: GGACAGAGCTGGCCTGAGTCATTGGCACAACAGACT...GTGAAAGACTGCCGGCTTTGTTTGAAACAGGAGTCGCTCGGAGTCCATGCTGTA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029270.10 ENSMUST00000196316.2 |
||
| CDS-3UTR TCA 90 bp | TACAGCATGGACTCCGAGCGACTCCTGTTTCAAACAAAGCCGGCAGTCTTTCACCATGTTGTGGCGCTTTaGGGTAGGTCTGGTGAAGGT | + |
|
Preference number: 4 (lower is better) Translates to: YSMDSERLLFQTKPAVFHHVVAL*GRSGEG Trigger: ACCTTCACCAGACCTACCTCAAAGCGCCACAACATG...GTGAAAGACTGCCGGCTTTGTTTGAAACAGGAGTCGCTCGGAGTCCATGCTGTA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029270.10 ENSMUST00000196316.2 |
||
| CDS-3UTR TCA 90 bp | TACAGCATGGACTCCGAGCGACTCCTGTTTCAAACAAAGCCGGCAGTCTTTCACTACTGGGTAAGGAACTaGTTTACTGTTGGTGCAGCC | + |
|
Preference number: 4 (lower is better) Translates to: YSMDSERLLFQTKPAVFHYWVRN*FTVGAA Trigger: GGCTGCACCAACAGTAAATCAGTTCCTTACCCAGTA...GTGAAAGACTGCCGGCTTTGTTTGAAACAGGAGTCGCTCGGAGTCCATGCTGTA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029270.10 ENSMUST00000196316.2 |
||
| CDS-3UTR GCA 90 bp | AGATTTCCAAATCAGTTTATTCTCAATATCTTGACAGTTGGCAGCACCAATGTTGCCTGCGCCCGCGGCTaGTGGGCTGGCGCCAGTTTT | + |
|
Preference number: 4 (lower is better) Translates to: RFPNQFILNILTVGSTNVACARG*WAGASF Trigger: AAAACTGGCGCCAGCCCAGCAGCCGCGGGCGCAGGC...AACATTGGTGCTGCCAACTGTCAAGATATTGAGAATAAACTGATTTGGAAATCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029270.10 ENSMUST00000147380.2 |
||
| CDS-3UTR GCA 90 bp | TACCATAATTTGTCTGTGGCTATACCATCTACATTCAGAAGTGATTGTGAAACTGCCTGCGCCCGCGGCTaGTGGGCTGGCGCCAGTTTT | + |
|
Preference number: 4 (lower is better) Translates to: YHNLSVAIPSTFRSDCETACARG*WAGASF Trigger: AAAACTGGCGCCAGCCCAGCAGCCGCGGGCGCAGGC...AGTTTCACAATCACTTCTGAATGTAGATGGTATAGCCACAGACAAATTATGGTA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029270.10 ENSMUST00000147380.2 |
||
| CDS-3UTR TCA 90 bp | GAATGCTTGTACTTTTCCCGTATTGACTGTTGGGCATGTTGTGGCGCTTTGAGGACTGACTGCTTTCCATaGAGGACCAGCAGTGACATG | + |
|
Preference number: 4 (lower is better) Translates to: ECLYFSRIDCWACCGALRTDCFP*RTSSDM Trigger: CATGTCACTGCTGGTCCTTCATGGAAAGCAGTCAGT...CCTCAAAGCGCCACAACATGCCCAACAGTCAATACGGGAAAAGTACAAGCATTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147380.2 |
||
| CDS-3UTR TCA 90 bp | GCTGTTATATTACTTCATTCACAGAGCTCAGACCAGTGCAAACCAGAAGGCACCACTGACTGCTTTCCATaGAGGACCAGCAGTGACATG | + |
|
Preference number: 4 (lower is better) Translates to: AVILLHSQSSDQCKPEGTTDCFP*RTSSDM Trigger: CATGTCACTGCTGGTCCTTCATGGAAAGCAGTCAGT...GGTGCCTTCTGGTTTGCACTGGTCTGAGCTCTGTGAATGAAGTAATATAACAGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029270.10 |
||
| CDS-3UTR GCA 90 bp | CGCTTTGAGGTAGGTCTGGTGAAGGTCCACAAGACAAGGCTTAAGACTCTCCAGCTTCTGAGTCTCTTCTaGTTCATCCACATGAATGGT | + |
|
Preference number: 4 (lower is better) Translates to: RFEVGLVKVHKTRLKTLQLLSLF*FIHMNG Trigger: ACCATTCATGTGGATGAAGCAGAAGAGACTCAGAAG...CTGGAGAGTCTTAAGCCTTGTCTTGTGGACCTTCACCAGACCTACCTCAAAGCG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147380.2 |
||
| CDS-3UTR GCA 90 bp | GTGATTGTGAAACTAAAACCCGACATAAAAACTGTACAGCATGGACTCCGAGCGTTTGCAGGCTGCAGGTaGAGGAAGTACTGGGTAAGG | + |
|
Preference number: 4 (lower is better) Translates to: VIVKLKPDIKTVQHGLRAFAGCR*RKYWVR Trigger: CCTTACCCAGTACTTCCTGCACCTGCAGCCTGCAAA...CGCTCGGAGTCCATGCTGTACAGTTTTTATGTCGGGTTTTAGTTTCACAATCAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029270.10 ENSMUST00000196316.2 |
||
| CDS-3UTR GCA 90 bp | AGTCCCAGTGACCCAATCCAGGACAGATGGGATACAGTGAGCTGTTATATTACTTTACAGTTTGCAGGCTaGAGGTGCAGGAAGTACTGG | + |
|
Preference number: 4 (lower is better) Translates to: SPSDPIQDRWDTVSCYITLQFAG*RCRKYW Trigger: CCAGTACTTCCTGCACCTGCAGCCTGCAAACTGTAA...AGTAATATAACAGCTCACTGTATCCCATCTGTCCTGGATTGGGTCACTGGGACT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029270.10 |
||
| CDS-3UTR GCA 90 bp | ACTTACTTAGAACAGGGTAAGATTCGGAAAGAGTGTCAGCCTCCGGGCAGTAGATTCAACCTTACAGTTTaGAGGCTGCAGGTGCAGGAA | + |
|
Preference number: 4 (lower is better) Translates to: TYLEQGKIRKECQPPGSRFNLTV*RLQVQE Trigger: TTCCTGCACCTGCAGCCTGCAAACTGTAAGGTTGAA...TCTACTGCCCGGAGGCTGACACTCTTTCCGAATCTTACCCTGTTCTAAGTAAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029270.10 |
||
| CDS-3UTR TCA 90 bp | GATTGTGAAACTAAAACCCGACATAAAAACTGTACAGCATGGACTCCGAGCGACAGGCAGGCTGTTTACTaGCTGCTTTCCATGAAGGAC | + |
|
Preference number: 4 (lower is better) Translates to: DCETKTRHKNCTAWTPSDRQAVY*LLSMKD Trigger: GTCCTTCATGGAAAGCAGTCAGTAAACAGCCTGCCT...GTCGCTCGGAGTCCATGCTGTACAGTTTTTATGTCGGGTTTTAGTTTCACAATC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029270.10 ENSMUST00000147380.2 |
||
| CDS-3UTR TCA 90 bp | TGTCTGTGGCTATACCATCTACATTCAGAAGTGATTGTGAAACTAAAACCCGACAGTCTGTTGTGCCAATaGCTCAGGCCAGCTCTGTCC | + |
|
Preference number: 4 (lower is better) Translates to: CLWLYHLHSEVIVKLKPDSLLCQ*LRPALS Trigger: GGACAGAGCTGGCCTGAGTCATTGGCACAACAGACT...GTCGGGTTTTAGTTTCACAATCACTTCTGAATGTAGATGGTATAGCCACAGACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029270.10 ENSMUST00000196316.2 |
||
| CDS-3UTR GCA 90 bp | GCTGTTATATTACTTCATTCACAGAGCTCAGACCAGTGCAAACCAGAAGGCACCGGACCAGCAGTGACATaGTCATCGTTTATAGGAAGG | + |
|
Preference number: 4 (lower is better) Translates to: AVILLHSQSSDQCKPEGTGPAVT*SSFIGR Trigger: CCTTCCTATAAACGATGAGCATGTCACTGCTGGTCC...GGTGCCTTCTGGTTTGCACTGGTCTGAGCTCTGTGAATGAAGTAATATAACAGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029270.10 |
||
| CDS-3UTR CCA 90 bp | GTGATTGTGAAACTAAAACCCGACATAAAAACTGTACAGCATGGACTCCGAGCGTCCCGTATTGACTGTTaGGCATGTTGTGGCGCTTTG | + |
|
Preference number: 4 (lower is better) Translates to: VIVKLKPDIKTVQHGLRASRIDC*ACCGAL Trigger: CAAAGCGCCACAACATGCCCAACAGTCAATACGGGA...CGCTCGGAGTCCATGCTGTACAGTTTTTATGTCGGGTTTTAGTTTCACAATCAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029270.10 ENSMUST00000196316.2 |
||
| CDS-3UTR TCA 90 bp | GATTGTGAAACTAAAACCCGACATAAAAACTGTACAGCATGGACTCCGAGCGACAGCTCCAGCAATGAGTaGAGGCAGGTACTTAAGGTA | + |
|
Preference number: 4 (lower is better) Translates to: DCETKTRHKNCTAWTPSDSSSNE*RQVLKV Trigger: TACCTTAAGTACCTGCCTTCACTCATTGCTGGAGCT...GTCGCTCGGAGTCCATGCTGTACAGTTTTTATGTCGGGTTTTAGTTTCACAATC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029270.10 ENSMUST00000196316.2 |
||
| CDS-3UTR GCA 90 bp | GCTGTTATATTACTTCATTCACAGAGCTCAGACCAGTGCAAACCAGAAGGCACCACTTTCAATACTAGGTaGTCCATTCTCAGAACCTGC | + |
|
Preference number: 4 (lower is better) Translates to: AVILLHSQSSDQCKPEGTTFNTR*SILRTC Trigger: GCAGGTTCTGAGAATGGAGCACCTAGTATTGAAAGT...GGTGCCTTCTGGTTTGCACTGGTCTGAGCTCTGTGAATGAAGTAATATAACAGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029270.10 |
||
| CDS-3UTR CCA 90 bp | AGTCCCAGTGACCCAATCCAGGACAGATGGGATACAGTGAGCTGTTATATTACTGAACTGATTTACTGTTaGTGCAGCCAAGTCAAAAGC | + |
|
Preference number: 4 (lower is better) Translates to: SPSDPIQDRWDTVSCYITELIYC*CSQVKS Trigger: GCTTTTGACTTGGCTGCACCAACAGTAAATCAGTTC...AGTAATATAACAGCTCACTGTATCCCATCTGTCCTGGATTGGGTCACTGGGACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029270.10 |
||
| CDS-3UTR TCA 90 bp | GACTTTTCCAAAGGTGCCCCTATAGTGCTATCAGATAGTGAAGAAGAAGAAATGGTGTCTCTGGTGGGTTaGGAAGAGAAACACTGTGAT | + |
|
Preference number: 4 (lower is better) Translates to: DFSKGAPIVLSDSEEEEMVSLVG*EEKHCD Trigger: ATCACAGTGTTTCTCTTCTCAACCCACCAGAGACAC...CATTTCTTCTTCTTCACTATCTGATAGCACTATAGGGGCACCTTTGGAAAAGTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029270.10 |
||
| CDS-3UTR GCA 90 bp | AGCAATGGATACCATAATTTGTCTGTGGCTATACCATCTACATTCAGAAGTGATTTTGCAGGCTGCAGGTaGAGGAAGTACTGGGTAAGG | + |
|
Preference number: 4 (lower is better) Translates to: SNGYHNLSVAIPSTFRSDFAGCR*RKYWVR Trigger: CCTTACCCAGTACTTCCTGCACCTGCAGCCTGCAAA...ATCACTTCTGAATGTAGATGGTATAGCCACAGACAAATTATGGTATCCATTGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029270.10 ENSMUST00000196316.2 |
||
| CDS-3UTR TCA 90 bp | TACCATAATTTGTCTGTGGCTATACCATCTACATTCAGAAGTGATTGTGAAACTTCAGCTGGCCTCTTCTaGGTCTCTTCTGCTTCATCC | + |
|
Preference number: 4 (lower is better) Translates to: YHNLSVAIPSTFRSDCETSAGLF*VSSASS Trigger: GGATGAAGCAGAAGAGACTCAGAAGAGGCCAGCTGA...AGTTTCACAATCACTTCTGAATGTAGATGGTATAGCCACAGACAAATTATGGTA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029270.10 ENSMUST00000147380.2 |
||
| CDS-3UTR CCA 90 bp | TGTCTGTGGCTATACCATCTACATTCAGAAGTGATTGTGAAACTAAAACCCGACTTCTTTAAGCTCAGCTaGCCTCTTCTGAGTCTCTTC | + |
|
Preference number: 4 (lower is better) Translates to: CLWLYHLHSEVIVKLKPDFFKLS*PLLSLF Trigger: GAAGAGACTCAGAAGAGGCCAGCTGAGCTTAAAGAA...GTCGGGTTTTAGTTTCACAATCACTTCTGAATGTAGATGGTATAGCCACAGACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029270.10 ENSMUST00000147380.2 |
||
| CDS-3UTR CCA 90 bp | AGCTGTTATATTACTTCATTCACAGAGCTCAGACCAGTGCAAACCAGAAGGCACCTCTTAACACAGACATaGAGGAGAGGAATCTATCAA | + |
|
Preference number: 4 (lower is better) Translates to: SCYITSFTELRPVQTRRHLLTQT*RRGIYQ Trigger: TTGATAGATTCCTCTCCTCCATGTCTGTGTTAAGAG...GTGCCTTCTGGTTTGCACTGGTCTGAGCTCTGTGAATGAAGTAATATAACAGCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029270.10 |
||
| CDS-3UTR CCA 90 bp | GTGATTGTGAAACTAAAACCCGACATAAAAACTGTACAGCATGGACTCCGAGCGCTCTTAACACAGACATaGAGGAGAGGAATCTATCAA | + |
|
Preference number: 4 (lower is better) Translates to: VIVKLKPDIKTVQHGLRALLTQT*RRGIYQ Trigger: TTGATAGATTCCTCTCCTCCATGTCTGTGTTAAGAG...CGCTCGGAGTCCATGCTGTACAGTTTTTATGTCGGGTTTTAGTTTCACAATCAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029270.10 ENSMUST00000196316.2 |
||
| CDS-3UTR CCA 90 bp | GCTGTTATATTACTTCATTCACAGAGCTCAGACCAGTGCAAACCAGAAGGCACCAAACTCTGCTACTTCTaGGGGGTATATTTCTTCAAA | + |
|
Preference number: 4 (lower is better) Translates to: AVILLHSQSSDQCKPEGTKLCYF*GVYFFK Trigger: TTTGAAGAAATATACCCCCCAGAAGTAGCAGAGTTT...GGTGCCTTCTGGTTTGCACTGGTCTGAGCTCTGTGAATGAAGTAATATAACAGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029270.10 |
||
| CDS-3UTR CCA 90 bp | TATGCTTTGAATAAACTTTCTGGAAAACTTTTCTGTTGCACAAGCTTCCCAACTCTGTTGGGCATGTTGTaGCGCTTTGAGGTAGGTCTG | + |
|
Preference number: 4 (lower is better) Translates to: YALNKLSGKLFCCTSFPTLLGML*RFEVGL Trigger: CAGACCTACCTCAAAGCGCCACAACATGCCCAACAG...AGTTGGGAAGCTTGTGCAACAGAAAAGTTTTCCAGAAAGTTTATTCAAAGCATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029270.10 |
||
| CDS-3UTR CCA 90 bp | TGGCTATACCATCTACATTCAGAAGTGATTGTGAAACTAAAACCCGACATAAAACTGTTGGGCATGTTGTaGCGCTTTGAGGTAGGTCTG | + |
|
Preference number: 4 (lower is better) Translates to: WLYHLHSEVIVKLKPDIKLLGML*RFEVGL Trigger: CAGACCTACCTCAAAGCGCCACAACATGCCCAACAG...TTTTATGTCGGGTTTTAGTTTCACAATCACTTCTGAATGTAGATGGTATAGCCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029270.10 ENSMUST00000196316.2 |
||
| CDS-3UTR CCA 90 bp | GTGGCTATACCATCTACATTCAGAAGTGATTGTGAAACTAAAACCCGACATAAATCCCGTATTGACTGTTaGGCATGTTGTGGCGCTTTG | + |
|
Preference number: 4 (lower is better) Translates to: VAIPSTFRSDCETKTRHKSRIDC*ACCGAL Trigger: CAAAGCGCCACAACATGCCCAACAGTCAATACGGGA...TTTATGTCGGGTTTTAGTTTCACAATCACTTCTGAATGTAGATGGTATAGCCAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029270.10 ENSMUST00000196316.2 |
||
| CDS-3UTR TCA 90 bp | GTGGCTATACCATCTACATTCAGAAGTGATTGTGAAACTAAAACCCGACATAAATACTGGGTAAGGAACTaGTTTACTGTTGGTGCAGCC | + |
|
Preference number: 4 (lower is better) Translates to: VAIPSTFRSDCETKTRHKYWVRN*FTVGAA Trigger: GGCTGCACCAACAGTAAATCAGTTCCTTACCCAGTA...TTTATGTCGGGTTTTAGTTTCACAATCACTTCTGAATGTAGATGGTATAGCCAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029270.10 ENSMUST00000196316.2 |
||
| CDS-3UTR TCA 90 bp | GTGGCTATACCATCTACATTCAGAAGTGATTGTGAAACTAAAACCCGACATAAAGTGTCTCTGGTGGGTTaGGAAGAGAAACACTGTGAT | + |
|
Preference number: 4 (lower is better) Translates to: VAIPSTFRSDCETKTRHKVSLVG*EEKHCD Trigger: ATCACAGTGTTTCTCTTCTCAACCCACCAGAGACAC...TTTATGTCGGGTTTTAGTTTCACAATCACTTCTGAATGTAGATGGTATAGCCAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029270.10 ENSMUST00000196316.2 |
||
| CDS-3UTR TCA 90 bp | AAGATTTCCAAATCAGTTTATTCTCAATATCTTGACAGTTGGCAGCACCAATGTTGCCTTCCATGTGTCTaGCCTACAAGCAAAACTGCC | + |
|
Preference number: 4 (lower is better) Translates to: KISKSVYSQYLDSWQHQCCLPCV*PTSKTA Trigger: GGCAGTTTTGCTTGTAGGTCAGACACATGGAAGGCA...ACATTGGTGCTGCCAACTGTCAAGATATTGAGAATAAACTGATTTGGAAATCTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147380.2 |
||
| CDS-3UTR GCA 90 bp | AGATTTCCAAATCAGTTTATTCTCAATATCTTGACAGTTGGCAGCACCAATGTTTTACAGTTTGCAGGCTaGAGGTGCAGGAAGTACTGG | + |
|
Preference number: 4 (lower is better) Translates to: RFPNQFILNILTVGSTNVLQFAG*RCRKYW Trigger: CCAGTACTTCCTGCACCTGCAGCCTGCAAACTGTAA...AACATTGGTGCTGCCAACTGTCAAGATATTGAGAATAAACTGATTTGGAAATCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029270.10 ENSMUST00000196316.2 |
||
| CDS-3UTR GCA 90 bp | AGCAATGGATACCATAATTTGTCTGTGGCTATACCATCTACATTCAGAAGTGATTTCAACCTTACAGTTTaGAGGCTGCAGGTGCAGGAA | + |
|
Preference number: 4 (lower is better) Translates to: SNGYHNLSVAIPSTFRSDFNLTV*RLQVQE Trigger: TTCCTGCACCTGCAGCCTGCAAACTGTAAGGTTGAA...ATCACTTCTGAATGTAGATGGTATAGCCACAGACAAATTATGGTATCCATTGCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029270.10 ENSMUST00000196316.2 |
||
| CDS-3UTR CCA 90 bp | AATGGATACCATAATTTGTCTGTGGCTATACCATCTACATTCAGAAGTGATTGTGCTGTTAGTGATGTCTaGCTGCCTCTTCATGTAACC | + |
|
Preference number: 4 (lower is better) Translates to: NGYHNLSVAIPSTFRSDCAVSDV*LPLHVT Trigger: GGTTACATGAAGAGGCAGCCAGACATCACTAACAGC...ACAATCACTTCTGAATGTAGATGGTATAGCCACAGACAAATTATGGTATCCATT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029270.10 ENSMUST00000196316.2 |
||
| CDS-3UTR CCA 90 bp | TACCATAATTTGTCTGTGGCTATACCATCTACATTCAGAAGTGATTGTGAAACTGCTGTTAGTGATGTCTaGCTGCCTCTTCATGTAACC | + |
|
Preference number: 4 (lower is better) Translates to: YHNLSVAIPSTFRSDCETAVSDV*LPLHVT Trigger: GGTTACATGAAGAGGCAGCCAGACATCACTAACAGC...AGTTTCACAATCACTTCTGAATGTAGATGGTATAGCCACAGACAAATTATGGTA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029270.10 ENSMUST00000196316.2 |
||
| CDS-3UTR GCA 90 bp | GCAAAGATTTCCAAATCAGTTTATTCTCAATATCTTGACAGTTGGCAGCACCAACTTCTGAGTCTCTTCTaGTTCATCCACATGAATGGT | + |
|
Preference number: 4 (lower is better) Translates to: AKISKSVYSQYLDSWQHQLLSLF*FIHMNG Trigger: ACCATTCATGTGGATGAAGCAGAAGAGACTCAGAAG...TTGGTGCTGCCAACTGTCAAGATATTGAGAATAAACTGATTTGGAAATCTTTGC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029270.10 |
||
| CDS-3UTR GCA 90 bp | GTGGCTATACCATCTACATTCAGAAGTGATTGTGAAACTAAAACCCGACATAAACTGATTTACTGTTGGTaGAGCCAAGTCAAAAGCAAG | + |
|
Preference number: 4 (lower is better) Translates to: VAIPSTFRSDCETKTRHKLIYCW*SQVKSK Trigger: CTTGCTTTTGACTTGGCTGCACCAACAGTAAATCAG...TTTATGTCGGGTTTTAGTTTCACAATCACTTCTGAATGTAGATGGTATAGCCAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029270.10 ENSMUST00000196316.2 |
||
| CDS-3UTR CCA 90 bp | AATGGATACCATAATTTGTCTGTGGCTATACCATCTACATTCAGAAGTGATTGTTTCTTTAAGCTCAGCTaGCCTCTTCTGAGTCTCTTC | + |
|
Preference number: 4 (lower is better) Translates to: NGYHNLSVAIPSTFRSDCFFKLS*PLLSLF Trigger: GAAGAGACTCAGAAGAGGCCAGCTGAGCTTAAAGAA...ACAATCACTTCTGAATGTAGATGGTATAGCCACAGACAAATTATGGTATCCATT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029270.10 ENSMUST00000147380.2 |
||
| CDS-3UTR CCA 90 bp | GCAAAGATTTCCAAATCAGTTTATTCTCAATATCTTGACAGTTGGCAGCACCAAAAAACTGCCATCCATTaGATAGTCAAGAGGTGTCAG | + |
|
Preference number: 4 (lower is better) Translates to: AKISKSVYSQYLDSWQHQKTAIH*IVKRCQ Trigger: CTGACACCTCTTGACTATCCAATGGATGGCAGTTTT...TTGGTGCTGCCAACTGTCAAGATATTGAGAATAAACTGATTTGGAAATCTTTGC 39% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000029270.10 |
||
| CDS-3UTR GCA 90 bp | GCAAAGATTTCCAAATCAGTTTATTCTCAATATCTTGACAGTTGGCAGCACCAAGTGGTGATTCAAAACTaGCATCCATTGGATAGTCAA | + |
|
Preference number: 4 (lower is better) Translates to: AKISKSVYSQYLDSWQHQVVIQN*HPLDSQ Trigger: TTGACTATCCAATGGATGGCAGTTTTGAATCACCAC...TTGGTGCTGCCAACTGTCAAGATATTGAGAATAAACTGATTTGGAAATCTTTGC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029270.10 |
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| CDS-3UTR GCA 90 bp | TGGCTATACCATCTACATTCAGAAGTGATTGTGAAACTAAAACCCGACATAAAAACTTTCAATACTAGGTaGTCCATTCTCAGAACCTGC | + |
|
Preference number: 4 (lower is better) Translates to: WLYHLHSEVIVKLKPDIKTFNTR*SILRTC Trigger: GCAGGTTCTGAGAATGGAGCACCTAGTATTGAAAGT...TTTTATGTCGGGTTTTAGTTTCACAATCACTTCTGAATGTAGATGGTATAGCCA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029270.10 ENSMUST00000196316.2 |
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| CDS-3UTR GCA 90 bp | AAGATTTCCAAATCAGTTTATTCTCAATATCTTGACAGTTGGCAGCACCAATGTCTGATTTACTGTTGGTaGAGCCAAGTCAAAAGCAAG | + |
|
Preference number: 4 (lower is better) Translates to: KISKSVYSQYLDSWQHQCLIYCW*SQVKSK Trigger: CTTGCTTTTGACTTGGCTGCACCAACAGTAAATCAG...ACATTGGTGCTGCCAACTGTCAAGATATTGAGAATAAACTGATTTGGAAATCTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029270.10 ENSMUST00000196316.2 |
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| CDS-3UTR GCA 90 bp | GTGGCTATACCATCTACATTCAGAAGTGATTGTGAAACTAAAACCCGACATAAAACCTACAAGCAAAACTaGCATCCATTGGATAGTCAA | + |
|
Preference number: 4 (lower is better) Translates to: VAIPSTFRSDCETKTRHKTYKQN*HPLDSQ Trigger: TTGACTATCCAATGGATGGCAGTTTTGCTTGTAGGT...TTTATGTCGGGTTTTAGTTTCACAATCACTTCTGAATGTAGATGGTATAGCCAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000147380.2 |
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| CDS-3UTR CCA 90 bp | TACCATAATTTGTCTGTGGCTATACCATCTACATTCAGAAGTGATTGTGAAACTGAACTGATTTACTGTTaGTGCAGCCAAGTCAAAAGC | + |
|
Preference number: 4 (lower is better) Translates to: YHNLSVAIPSTFRSDCETELIYC*CSQVKS Trigger: GCTTTTGACTTGGCTGCACCAACAGTAAATCAGTTC...AGTTTCACAATCACTTCTGAATGTAGATGGTATAGCCACAGACAAATTATGGTA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029270.10 ENSMUST00000196316.2 |
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| CDS-3UTR CCA 90 bp | AGATTTCCAAATCAGTTTATTCTCAATATCTTGACAGTTGGCAGCACCAATGTTAAACTCTGCTACTTCTaGGGGGTATATTTCTTCAAA | + |
|
Preference number: 4 (lower is better) Translates to: RFPNQFILNILTVGSTNVKLCYF*GVYFFK Trigger: TTTGAAGAAATATACCCCCCAGAAGTAGCAGAGTTT...AACATTGGTGCTGCCAACTGTCAAGATATTGAGAATAAACTGATTTGGAAATCT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029270.10 ENSMUST00000196316.2 |
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| 3UTR CAA 72 bp | TGTCTACTTTTGGTTATTTATGAACAAGTCAGCAGTTaGGTTTGGTTGCTTAGAATAATCAATCAATGCCAG | + |
|
Preference number: 4 (lower is better) Translates to: CLLLVIYEQVSS*VWLLRIINQCQ Trigger: CTGGCATTGATTGATTATTCTAAGCAACCAAACCAAACTGCTGACTTGTTCATAAATAACCAAAAGTAGACA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029270.10 |
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| CDS GCA 90 bp | TGCTGCGGCGCGGGTCCACGCACGTTCCCGGCCTTCAGCACCGCCTaGGCCCGCGGCTGCTGGGCTGGCGCCAGTTTTTCGGGGTTGACA | + |
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Preference number: 5 (lower is better) Translates to: CCGAGPRTFPAFSTA*ARGCWAGASFSGLT Trigger: TGTCAACCCCGAAAAACTGGCGCCAGCCCAGCAGCCGCGGGCGCAGGCGGTGCTGAAGGCCGGGAACGTGCGTGGACCCGCGCCGCAGCA 72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029270.10 ENSMUST00000147380.2 |
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| CDS TCA 90 bp | CCGCCTGCGCCCGCGGCTGCTGGGCTGGCGCCAGTTTTTCGGGGTTaGCATTCTCTTGGTCTTCCTGATGCAGCGAGAGCAGGGCTGAGC | + |
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Preference number: 5 (lower is better) Translates to: PPAPAAAGLAPVFRG*HSLGLPDAARAGLS Trigger: GCTCAGCCCTGCTCTCGCTGCATCAGGAAGACCAAGAGAATGTCAACCCCGAAAAACTGGCGCCAGCCCAGCAGCCGCGGGCGCAGGCGG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029270.10 ENSMUST00000147380.2 |
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| CDS-3UTR CAA 90 bp | CTCCGGGCAGTAGAGCTTGGGAGCTCCCTTAGCCTGGAGATGGGAGCGTTAGGATTAACGTTCACTGGCTaGTCTTCTAAGACAATAGAC | + |
|
Preference number: 5 (lower is better) Translates to: LRAVELGSSLSLEMGALGLTFTG*SSKTID Trigger: GTCTATTGTCTTAGAAGACAAGCCAGTGAACGTTAA...TCCTAACGCTCCCATCTCCAGGCTAAGGGAGCTCCCAAGCTCTACTGCCCGGAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029270.10 |
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| CDS GCA 90 bp | GCAGGCTGTTTACTGACTGCTTTCCATGAAGGACCAGCAGTGACATaGTCATCGTTTATAGGAAGGTCCTTAAGAGGAGCAACCCGTCGA | + |
|
Preference number: 5 (lower is better) Translates to: AGCLLTAFHEGPAVT*SSFIGRSLRGATRR Trigger: TCGACGGGTTGCTCCTCTTAAGGACCTTCCTATAAACGATGAGCATGTCACTGCTGGTCCTTCATGGAAAGCAGTCAGTAAACAGCCTGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029270.10 ENSMUST00000147380.2 |
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| CDS-3UTR CAA 90 bp | ACTTACTTAGAACAGGGTAAGATTCGGAAAGAGTGTCAGCCTCCGGGCAGTAGATTTCAACCTTACAGTTaGCAGGCTGCAGGTGCAGGA | + |
|
Preference number: 5 (lower is better) Translates to: TYLEQGKIRKECQPPGSRFQPYS*QAAGAG Trigger: TCCTGCACCTGCAGCCTGCAAACTGTAAGGTTGAAA...TCTACTGCCCGGAGGCTGACACTCTTTCCGAATCTTACCCTGTTCTAAGTAAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029270.10 |
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| CDS GCA 90 bp | ACACTCTGTTTCTTTAAGCTCAGCTGGCCTCTTCTGAGTCTCTTCTaGTTCATCCACATGAATGGTGAAGGCAGGCTGTTTACTGACTGC | + |
|
Preference number: 5 (lower is better) Translates to: TLCFFKLSWPLLSLF*FIHMNGEGRLFTDC Trigger: GCAGTCAGTAAACAGCCTGCCTTCACCATTCATGTGGATGAAGCAGAAGAGACTCAGAAGAGGCCAGCTGAGCTTAAAGAAACAGAGTGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029270.10 ENSMUST00000147380.2 |
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| CDS TCA 90 bp | ATCCACATGAATGGTGAAGGCAGGCTGTTTACTGACTGCTTTCCATaGAGGACCAGCAGTGACATGCTCATCGTTTATAGGAAGGTCCTT | + |
|
Preference number: 5 (lower is better) Translates to: IHMNGEGRLFTDCFP*RTSSDMLIVYRKVL Trigger: AAGGACCTTCCTATAAACGATGAGCATGTCACTGCTGGTCCTTCATGGAAAGCAGTCAGTAAACAGCCTGCCTTCACCATTCATGTGGAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029270.10 ENSMUST00000147380.2 |
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| CDS CCA 90 bp | ATTAAAAGCCAGGGCATCTTCACACTCTGTTTCTTTAAGCTCAGCTaGCCTCTTCTGAGTCTCTTCTGCTTCATCCACATGAATGGTGAA | + |
|
Preference number: 5 (lower is better) Translates to: IKSQGIFTLCFFKLS*PLLSLFCFIHMNGE Trigger: TTCACCATTCATGTGGATGAAGCAGAAGAGACTCAGAAGAGGCCAGCTGAGCTTAAAGAAACAGAGTGTGAAGATGCCCTGGCTTTTAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029270.10 ENSMUST00000147380.2 |
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| CDS-3UTR CAA 90 bp | TGTCTGTGGCTATACCATCTACATTCAGAAGTGATTGTGAAACTAAAACCCGACTTTCAACCTTACAGTTaGCAGGCTGCAGGTGCAGGA | + |
|
Preference number: 5 (lower is better) Translates to: CLWLYHLHSEVIVKLKPDFQPYS*QAAGAG Trigger: TCCTGCACCTGCAGCCTGCAAACTGTAAGGTTGAAA...GTCGGGTTTTAGTTTCACAATCACTTCTGAATGTAGATGGTATAGCCACAGACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029270.10 ENSMUST00000196316.2 |
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| CDS-3UTR CAA 90 bp | TGTCTGTGGCTATACCATCTACATTCAGAAGTGATTGTGAAACTAAAACCCGACCAAAACTGCCATCCATaGGATAGTCAAGAGGTGTCA | + |
|
Preference number: 5 (lower is better) Translates to: CLWLYHLHSEVIVKLKPDQNCHP*DSQEVS Trigger: TGACACCTCTTGACTATCCAATGGATGGCAGTTTTG...GTCGGGTTTTAGTTTCACAATCACTTCTGAATGTAGATGGTATAGCCACAGACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029270.10 ENSMUST00000147380.2 |
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| CDS-3UTR CAA 90 bp | AGATTTCCAAATCAGTTTATTCTCAATATCTTGACAGTTGGCAGCACCAATGTTCAAAACTGCCATCCATaGGATAGTCAAGAGGTGTCA | + |
|
Preference number: 5 (lower is better) Translates to: RFPNQFILNILTVGSTNVQNCHP*DSQEVS Trigger: TGACACCTCTTGACTATCCAATGGATGGCAGTTTTG...AACATTGGTGCTGCCAACTGTCAAGATATTGAGAATAAACTGATTTGGAAATCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029270.10 ENSMUST00000147380.2 |
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| CDS-3UTR CAA 90 bp | TACCATAATTTGTCTGTGGCTATACCATCTACATTCAGAAGTGATTGTGAAACTGGAACTGATTTACTGTaGGTGCAGCCAAGTCAAAAG | + |
|
Preference number: 5 (lower is better) Translates to: YHNLSVAIPSTFRSDCETGTDLL*VQPSQK Trigger: CTTTTGACTTGGCTGCACCAACAGTAAATCAGTTCC...AGTTTCACAATCACTTCTGAATGTAGATGGTATAGCCACAGACAAATTATGGTA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029270.10 ENSMUST00000196316.2 |
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| CDS-3UTR CAA 90 bp | AAGATTTCCAAATCAGTTTATTCTCAATATCTTGACAGTTGGCAGCACCAATGTGGAACTGATTTACTGTaGGTGCAGCCAAGTCAAAAG | + |
|
Preference number: 5 (lower is better) Translates to: KISKSVYSQYLDSWQHQCGTDLL*VQPSQK Trigger: CTTTTGACTTGGCTGCACCAACAGTAAATCAGTTCC...ACATTGGTGCTGCCAACTGTCAAGATATTGAGAATAAACTGATTTGGAAATCTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029270.10 ENSMUST00000196316.2 |
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| CDS-3UTR CAA 90 bp | AAGATTTCCAAATCAGTTTATTCTCAATATCTTGACAGTTGGCAGCACCAATGTTTAACGTTCACTGGCTaGTCTTCTAAGACAATAGAC | + |
|
Preference number: 5 (lower is better) Translates to: KISKSVYSQYLDSWQHQCLTFTG*SSKTID Trigger: GTCTATTGTCTTAGAAGACAAGCCAGTGAACGTTAA...ACATTGGTGCTGCCAACTGTCAAGATATTGAGAATAAACTGATTTGGAAATCTT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029270.10 ENSMUST00000196316.2 |
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| CDS-3UTR CAA 90 bp | AATGGATACCATAATTTGTCTGTGGCTATACCATCTACATTCAGAAGTGATTGTCGTGTGAATGTCTTCTaGATAGTCAGGTACTTCATT | + |
|
Preference number: 5 (lower is better) Translates to: NGYHNLSVAIPSTFRSDCRVNVF*IVRYFI Trigger: AATGAAGTACCTGACTATCAAGAAGACATTCACACG...ACAATCACTTCTGAATGTAGATGGTATAGCCACAGACAAATTATGGTATCCATT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029270.10 ENSMUST00000196316.2 |
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| CDS-3UTR CAA 90 bp | TATGCTTTGAATAAACTTTCTGGAAAACTTTTCTGTTGCACAAGCTTCCCAACTGTTCTCCCAAAAACATaGCTAAGCTTTCAACCTTAC | + |
|
Preference number: 5 (lower is better) Translates to: YALNKLSGKLFCCTSFPTVLPKT*LSFQPY Trigger: GTAAGGTTGAAAGCTTAGCAATGTTTTTGGGAGAAC...AGTTGGGAAGCTTGTGCAACAGAAAAGTTTTCCAGAAAGTTTATTCAAAGCATA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000029270.10 |
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| CDS-3UTR CAA 90 bp | AGATTTCCAAATCAGTTTATTCTCAATATCTTGACAGTTGGCAGCACCAATGTTGTTCTCCCAAAAACATaGCTAAGCTTTCAACCTTAC | + |
|
Preference number: 5 (lower is better) Translates to: RFPNQFILNILTVGSTNVVLPKT*LSFQPY Trigger: GTAAGGTTGAAAGCTTAGCAATGTTTTTGGGAGAAC...AACATTGGTGCTGCCAACTGTCAAGATATTGAGAATAAACTGATTTGGAAATCT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029270.10 ENSMUST00000196316.2 |
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| CDS GCA 72 bp | GCGGGTCCACGCACGTTCCCGGCCTTCAGCACCGCCTaGGCCCGCGGCTGCTGGGCTGGCGCCAGTTTTTCG | + |
|
Preference number: 6 (lower is better) Translates to: AGPRTFPAFSTA*ARGCWAGASFS Trigger: CGAAAAACTGGCGCCAGCCCAGCAGCCGCGGGCGCAGGCGGTGCTGAAGGCCGGGAACGTGCGTGGACCCGC 74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029270.10 ENSMUST00000147380.2 |
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| CDS GCA 72 bp | ACGTTCCCGGCCTTCAGCACCGCCTGCGCCCGCGGCTaGTGGGCTGGCGCCAGTTTTTCGGGGTTGACATTC | + |
|
Preference number: 6 (lower is better) Translates to: TFPAFSTACARG*WAGASFSGLTF Trigger: GAATGTCAACCCCGAAAAACTGGCGCCAGCCCAGCAGCCGCGGGCGCAGGCGGTGCTGAAGGCCGGGAACGT 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029270.10 ENSMUST00000147380.2 |
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| CDS TCA 72 bp | ATTCTCTTGGTCTTCCTGATGCAGCGAGAGCAGGGCTaGGCCCGCATCGCGACCCGAATGCCTCGAGGTGCC | + |
|
Preference number: 6 (lower is better) Translates to: ILLVFLMQREQG*ARIATRMPRGA Trigger: GGCACCTCGAGGCATTCGGGTCGCGATGCGGGCTCAGCCCTGCTCTCGCTGCATCAGGAAGACCAAGAGAAT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029270.10 ENSMUST00000147380.2 |
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| CDS TCA 72 bp | CCCGCGGCTGCTGGGCTGGCGCCAGTTTTTCGGGGTTaGCATTCTCTTGGTCTTCCTGATGCAGCGAGAGCA | + |
|
Preference number: 6 (lower is better) Translates to: PAAAGLAPVFRG*HSLGLPDAARA Trigger: TGCTCTCGCTGCATCAGGAAGACCAAGAGAATGTCAACCCCGAAAAACTGGCGCCAGCCCAGCAGCCGCGGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029270.10 ENSMUST00000147380.2 |
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| CDS TCA 72 bp | GCCAGTTTTTCGGGGTTGACATTCTCTTGGTCTTCCTaGTGCAGCGAGAGCAGGGCTGAGCCCGCATCGCGA | + |
|
Preference number: 6 (lower is better) Translates to: ASFSGLTFSWSS*CSESRAEPASR Trigger: TCGCGATGCGGGCTCAGCCCTGCTCTCGCTGCATCAGGAAGACCAAGAGAATGTCAACCCCGAAAAACTGGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029270.10 ENSMUST00000147380.2 |
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| CDS TCA 72 bp | AATGGTGAAGGCAGGCTGTTTACTGACTGCTTTCCATaGAGGACCAGCAGTGACATGCTCATCGTTTATAGG | + |
|
Preference number: 6 (lower is better) Translates to: NGEGRLFTDCFP*RTSSDMLIVYR Trigger: CCTATAAACGATGAGCATGTCACTGCTGGTCCTTCATGGAAAGCAGTCAGTAAACAGCCTGCCTTCACCATT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029270.10 ENSMUST00000147380.2 |
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| CDS CAA 72 bp | TCCATGTGTCTGACCTACAAGCAAAACTGCCATCCATaGGATAGTCAAGAGGTGTCAGTGGTTTTCTTGCTC | + |
|
Preference number: 6 (lower is better) Translates to: SMCLTYKQNCHP*DSQEVSVVFLL Trigger: GAGCAAGAAAACCACTGACACCTCTTGACTATCCAATGGATGGCAGTTTTGCTTGTAGGTCAGACACATGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000147380.2 |
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| CDS GCA 72 bp | ATTTTGCCTTCCATGTGTCTGACCTACAAGCAAAACTaGCATCCATTGGATAGTCAAGAGGTGTCAGTGGTT | + |
|
Preference number: 6 (lower is better) Translates to: ILPSMCLTYKQN*HPLDSQEVSVV Trigger: AACCACTGACACCTCTTGACTATCCAATGGATGGCAGTTTTGCTTGTAGGTCAGACACATGGAAGGCAAAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000147380.2 |
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