Pregenerated sensors for CCNA1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027793Ensembl transcript IDs: ENSMUST00000029368.7, ENSMUST00000197238.5, ENSMUST00000198102.5, ENSMUST00000198320.5, ENSMUST00000199144.5, ENSMUST00000199352.2
Found 60 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CAACCTCCACCAGCCAGTCCACCAGGATGGCGCGCATGCCCTCCGTaGTGTCCGGCTGCTTCCTCATGTAGTGAGCCTTGGGTCTGTGTC | + |
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Preference number: 5 (lower is better) Translates to: QPPPASPPGWRACPP*CPAASSCSEPWVCV Trigger: GACACAGACCCAAGGCTCACTACATGAGGAAGCAGCCGGACATCACGGAGGGCATGCGCGCCATCCTGGTGGACTGGCTGGTGGAGGTTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000029368.7 ENSMUST00000197238.5 ENSMUST00000198102.5 ENSMUST00000198320.5 |
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| CDS TCA 90 bp | CTAGCACGGTTCTCTGTGGGGGATCCTGGCCAAGCTGAGCTCTGCTaGGCATTTGACAAGCATCAGGACCTTGGCCCACTGGAGGCAGAG | + |
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Preference number: 5 (lower is better) Translates to: LARFSVGDPGQAELC*AFDKHQDLGPLEAE Trigger: CTCTGCCTCCAGTGGGCCAAGGTCCTGATGCTTGTCAAATGCTCAGCAGAGCTCAGCTTGGCCAGGATCCCCCACAGAGAACCGTGCTAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000029368.7 ENSMUST00000197238.5 ENSMUST00000198320.5 ENSMUST00000199144.5 ENSMUST00000199352.2 |
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| CDS GCA 90 bp | CTCAGAGCAAGCCTGCTGATGTGGCCAATGAGCTTTGCCATTCACTaGAGGGGAAGAACTACAGGCGGCTCCATGAGGGACACGTGCAGG | + |
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Preference number: 5 (lower is better) Translates to: LRASLLMWPMSFAIH*RGRTTGGSMRDTCR Trigger: CCTGCACGTGTCCCTCATGGAGCCGCCTGTAGTTCTTCCCCTGCAGTGAATGGCAAAGCTCATTGGCCACATCAGCAGGCTTGCTCTGAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000198102.5 |
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| CDS GCA 90 bp | TCGCAGAAACCTCAGAGCAAGCCTGCTGATGTGGCCAATGAGCTTTaGCATTCACTGCAGGGGAAGAACTACAGGCGGCTCCATGAGGGA | + |
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Preference number: 5 (lower is better) Translates to: SQKPQSKPADVANEL*HSLQGKNYRRLHEG Trigger: TCCCTCATGGAGCCGCCTGTAGTTCTTCCCCTGCAGTGAATGGCAAAGCTCATTGGCCACATCAGCAGGCTTGCTCTGAGGTTTCTGCGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000198102.5 |
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| CDS GCA 90 bp | GAGGGACACGTGCAGGTACTTCGAAGCCTTGTACTTCTCCCTGATTaGTTGCTGCGGTCGATGGGGGATACTGAGGCATGCTTTATGCAG | + |
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Preference number: 5 (lower is better) Translates to: EGHVQVLRSLVLLPD*LLRSMGDTEACFMQ Trigger: CTGCATAAAGCATGCCTCAGTATCCCCCATCGACCGCAGCAAGCAATCAGGGAGAAGTACAAGGCTTCGAAGTACCTGCACGTGTCCCTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000029368.7 ENSMUST00000197238.5 ENSMUST00000198320.5 |
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| CDS CCA 90 bp | TTAGTTGGCCCCACTCGCAGAAACCTCAGAGCAAGCCTGCTGATGTaGCCAATGAGCTTTGCCATTCACTGCAGGGGAAGAACTACAGGC | + |
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Preference number: 5 (lower is better) Translates to: LVGPTRRNLRASLLM*PMSFAIHCRGRTTG Trigger: GCCTGTAGTTCTTCCCCTGCAGTGAATGGCAAAGCTCATTGGCCACATCAGCAGGCTTGCTCTGAGGTTTCTGCGAGTGGGGCCAACTAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000198102.5 |
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| CDS GCA 90 bp | ACGTGCAGGTACTTCGAAGCCTTGTACTTCTCCCTGATTGCTTGCTaGGGTCGATGGGGGATACTGAGGCATGCTTTATGCAGCTCACTC | + |
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Preference number: 5 (lower is better) Translates to: TCRYFEALYFSLIAC*GRWGILRHALCSSL Trigger: GAGTGAGCTGCATAAAGCATGCCTCAGTATCCCCCATCGACCGCAGCAAGCAATCAGGGAGAAGTACAAGGCTTCGAAGTACCTGCACGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000029368.7 ENSMUST00000197238.5 ENSMUST00000198320.5 |
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| CDS GCA 90 bp | GACACGTGCAGGTACTTCGAAGCCTTGTACTTCTCCCTGATTGCTTaGTGCGGTCGATGGGGGATACTGAGGCATGCTTTATGCAGCTCA | + |
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Preference number: 5 (lower is better) Translates to: DTCRYFEALYFSLIA*CGRWGILRHALCSS Trigger: TGAGCTGCATAAAGCATGCCTCAGTATCCCCCATCGACCGCAGCAAGCAATCAGGGAGAAGTACAAGGCTTCGAAGTACCTGCACGTGTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000029368.7 ENSMUST00000197238.5 ENSMUST00000198320.5 |
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| CDS CCA 90 bp | TACTTCGAAGCCTTGTACTTCTCCCTGATTGCTTGCTGCGGTCGATaGGGGATACTGAGGCATGCTTTATGCAGCTCACTCAGGCAAGGC | + |
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Preference number: 5 (lower is better) Translates to: YFEALYFSLIACCGR*GILRHALCSSLRQG Trigger: GCCTTGCCTGAGTGAGCTGCATAAAGCATGCCTCAGTATCCCCCATCGACCGCAGCAAGCAATCAGGGAGAAGTACAAGGCTTCGAAGTA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029368.7 ENSMUST00000197238.5 ENSMUST00000198320.5 |
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| CDS GCA 90 bp | GTGGTTGGAACGGTCAGATCAAATGCCAGGACTTTGAGTAGCAGATaGTCCATCCTCAGTAGCTGTCGCTTTGTGTACGTATCGTCGGTG | + |
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Preference number: 5 (lower is better) Translates to: VVGTVRSNARTLSSR*SILSSCRFVYVSSV Trigger: CACCGACGATACGTACACAAAGCGACAGCTACTGAGGATGGAGCATCTGCTACTCAAAGTCCTGGCATTTGATCTGACCGTTCCAACCAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000029368.7 ENSMUST00000197238.5 ENSMUST00000198102.5 ENSMUST00000198320.5 |
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| CDS TCA 90 bp | GGAATTGGTTGGTGGTTGGAACGGTCAGATCAAATGCCAGGACTTTaGGTAGCAGATGCTCCATCCTCAGTAGCTGTCGCTTTGTGTACG | + |
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Preference number: 5 (lower is better) Translates to: GIGWWLERSDQMPGL*VADAPSSVAVALCT Trigger: CGTACACAAAGCGACAGCTACTGAGGATGGAGCATCTGCTACTCAAAGTCCTGGCATTTGATCTGACCGTTCCAACCACCAACCAATTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000029368.7 ENSMUST00000197238.5 ENSMUST00000198102.5 ENSMUST00000198320.5 |
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| CDS CCA 90 bp | CCCCTGTTCAGGATCATCCATATAGATATCAAACCCACGTTTGGCTaGTTCATTGACCCCATGGTCAGAGAGCACTTTCTTTCCAGCCGC | + |
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Preference number: 5 (lower is better) Translates to: PLFRIIHIDIKPTFG*FIDPMVREHFLSSR Trigger: GCGGCTGGAAAGAAAGTGCTCTCTGACCATGGGGTCAATGAACCAGCCAAACGTGGGTTTGATATCTATATGGATGATCCTGAACAGGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000029368.7 ENSMUST00000197238.5 ENSMUST00000198320.5 ENSMUST00000199144.5 |
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| CDS CCA 90 bp | GGGTCAACCAGCATTGGGGAAACTGTGTTGAAATCCAGCAGGAAGTaGAGATCTGACTTGAGCATGCTGGTGTCGACTTCATACACATCC | + |
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Preference number: 5 (lower is better) Translates to: GSTSIGETVLKSSRK*RSDLSMLVSTSYTS Trigger: GGATGTGTATGAAGTCGACACCAGCATGCTCAAGTCAGATCTCCACTTCCTGCTGGATTTCAACACAGTTTCCCCAATGCTGGTTGACCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029368.7 ENSMUST00000197238.5 ENSMUST00000198320.5 ENSMUST00000199144.5 |
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| CDS TCA 90 bp | CAGGATCATCCATATAGATATCAAACCCACGTTTGGCTGGTTCATTaGCCCCATGGTCAGAGAGCACTTTCTTTCCAGCCGCAGGGAAGA | + |
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Preference number: 5 (lower is better) Translates to: QDHPYRYQTHVWLVH*PHGQRALSFQPQGR Trigger: TCTTCCCTGCGGCTGGAAAGAAAGTGCTCTCTGACCATGGGGTCAATGAACCAGCCAAACGTGGGTTTGATATCTATATGGATGATCCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029368.7 ENSMUST00000197238.5 ENSMUST00000198320.5 ENSMUST00000199144.5 |
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| CDS TCA 90 bp | GATGCTCCATCCTCAGTAGCTGTCGCTTTGTGTACGTATCGTCGGTaGTGTAGACAAACTCATCCACGTCGGGCGGATATATCTCTTCAT | + |
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Preference number: 5 (lower is better) Translates to: DAPSSVAVALCTYRR*CRQTHPRRADISLH Trigger: ATGAAGAGATATATCCGCCCGACGTGGATGAGTTTGTCTACATCACCGACGATACGTACACAAAGCGACAGCTACTGAGGATGGAGCATC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000029368.7 ENSMUST00000197238.5 ENSMUST00000198102.5 ENSMUST00000198320.5 |
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| CDS TCA 90 bp | CCAGAAGGCTCAGTTCTGCAACATACTTGGCCAAATTCTCAGTCCTaGTGCACACTCCTTGACGCCTTAGGTACTGAAGGAGGAATTGGT | + |
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Preference number: 5 (lower is better) Translates to: PEGSVLQHTWPNSQS*CTLLDALGTEGGIG Trigger: ACCAATTCCTCCTTCAGTACCTAAGGCGTCAAGGAGTGTGCATCAGGACTGAGAATTTGGCCAAGTATGTTGCAGAACTGAGCCTTCTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000029368.7 ENSMUST00000197238.5 ENSMUST00000198102.5 ENSMUST00000198320.5 |
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| CDS GCA 90 bp | TCTTCATATTTCGAAGCCAGGAGAATAGCTGCTGTCCCGACAAGCTaGAATTTCCCTCTCAGAACAGACATGCAGGAGAGAAACCTGTCC | + |
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Preference number: 5 (lower is better) Translates to: SSYFEARRIAAVPTS*NFPLRTDMQERNLS Trigger: GGACAGGTTTCTCTCCTGCATGTCTGTTCTGAGAGGGAAATTGCAGCTTGTCGGGACAGCAGCTATTCTCCTGGCTTCGAAATATGAAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000029368.7 ENSMUST00000197238.5 ENSMUST00000198102.5 ENSMUST00000198320.5 |
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| CDS GCA 90 bp | AGGGACACGTGCAGGTACCCAGAAGTGTCTGTTCACAATATAGTTTaGCAGGCAGTAAGCTGCTGCAGCAACCAAGGAAGGAAGATACTT | + |
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Preference number: 5 (lower is better) Translates to: RDTCRYPEVSVHNIV*QAVSCCSNQGRKIL Trigger: AAGTATCTTCCTTCCTTGGTTGCTGCAGCAGCTTACTGCCTGGCAAACTATATTGTGAACAGACACTTCTGGGTACCTGCACGTGTCCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000198102.5 |
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| CDS CCA 90 bp | GCAGTAAGCTGCTGCAGCAACCAAGGAAGGAAGATACTTCAAGAATaGGTCAGCTTCCAGAAGGCTCAGTTCTGCAACATACTTGGCCAA | + |
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Preference number: 5 (lower is better) Translates to: AVSCCSNQGRKILQE*VSFQKAQFCNILGQ Trigger: TTGGCCAAGTATGTTGCAGAACTGAGCCTTCTGGAAGCTGACCCATTCTTGAAGTATCTTCCTTCCTTGGTTGCTGCAGCAGCTTACTGC 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000029368.7 ENSMUST00000197238.5 ENSMUST00000198102.5 ENSMUST00000198320.5 |
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| CDS TCA 90 bp | ATGGTCAGAGAGCACTTTCTTTCCAGCCGCAGGGAAGACATTTTCTaGTCCAGAAAAACATCTGATTGCTGTGATCTCCTGGCCACAGGT | + |
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Preference number: 5 (lower is better) Translates to: MVREHFLSSRREDIF*SRKTSDCCDLLATG Trigger: ACCTGTGGCCAGGAGATCACAGCAATCAGATGTTTTTCTGGATCAGAAAATGTCTTCCCTGCGGCTGGAAAGAAAGTGCTCTCTGACCAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000029368.7 ENSMUST00000197238.5 ENSMUST00000198320.5 ENSMUST00000199144.5 ENSMUST00000199352.2 |
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| CDS GCA 90 bp | TGCAGCAAGTGTTTCTGGCCAGAAGTGTCTGTTCACAATATAGTTTaGCAGGCAGTAAGCTGCTGCAGCAACCAAGGAAGGAAGATACTT | + |
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Preference number: 5 (lower is better) Translates to: CSKCFWPEVSVHNIV*QAVSCCSNQGRKIL Trigger: AAGTATCTTCCTTCCTTGGTTGCTGCAGCAGCTTACTGCCTGGCAAACTATATTGTGAACAGACACTTCTGGCCAGAAACACTTGCTGCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029368.7 ENSMUST00000197238.5 ENSMUST00000198320.5 |
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| CDS TCA 90 bp | CAGCATTGGGGAAACTGTGTTGAAATCCAGCAGGAAGTGGAGATCTaGCTTGAGCATGCTGGTGTCGACTTCATACACATCCTCAAATAT | + |
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Preference number: 5 (lower is better) Translates to: QHWGNCVEIQQEVEI*LEHAGVDFIHILKY Trigger: ATATTTGAGGATGTGTATGAAGTCGACACCAGCATGCTCAAGTCAGATCTCCACTTCCTGCTGGATTTCAACACAGTTTCCCCAATGCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029368.7 ENSMUST00000197238.5 ENSMUST00000198320.5 ENSMUST00000199144.5 |
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| CDS TCA 72 bp | CCAGCCAGTCCACCAGGATGGCGCGCATGCCCTCCGTaGTGTCCGGCTGCTTCCTCATGTAGTGAGCCTTGG | + |
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Preference number: 6 (lower is better) Translates to: PASPPGWRACPP*CPAASSCSEPW Trigger: CCAAGGCTCACTACATGAGGAAGCAGCCGGACATCACGGAGGGCATGCGCGCCATCCTGGTGGACTGGCTGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000029368.7 ENSMUST00000197238.5 ENSMUST00000198102.5 ENSMUST00000198320.5 |
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| CDS CAA 90 bp | GGTTCTCTGTGGGGGATCCTGGCCAAGCTGAGCTCTGCTGAGCATTaGACAAGCATCAGGACCTTGGCCCACTGGAGGCAGAGCGACTCC | + |
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Preference number: 6 (lower is better) Translates to: GSLWGILAKLSSAEH*TSIRTLAHWRQSDS Trigger: GGAGTCGCTCTGCCTCCAGTGGGCCAAGGTCCTGATGCTTGTCAAATGCTCAGCAGAGCTCAGCTTGGCCAGGATCCCCCACAGAGAACC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000029368.7 ENSMUST00000197238.5 ENSMUST00000198320.5 ENSMUST00000199144.5 ENSMUST00000199352.2 |
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| CDS CCA 72 bp | GCTGAGCATTTGACAAGCATCAGGACCTTGGCCCACTaGAGGCAGAGCGACTCCACTCTTGGAGCTCTGGCG | + |
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Preference number: 6 (lower is better) Translates to: AEHLTSIRTLAH*RQSDSTLGALA Trigger: CGCCAGAGCTCCAAGAGTGGAGTCGCTCTGCCTCCAGTGGGCCAAGGTCCTGATGCTTGTCAAATGCTCAGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000029368.7 ENSMUST00000197238.5 ENSMUST00000198320.5 ENSMUST00000199144.5 ENSMUST00000199352.2 |
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| CDS GCA 72 bp | AGCCTGCTGATGTGGCCAATGAGCTTTGCCATTCACTaGAGGGGAAGAACTACAGGCGGCTCCATGAGGGAC | + |
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Preference number: 6 (lower is better) Translates to: SLLMWPMSFAIH*RGRTTGGSMRD Trigger: GTCCCTCATGGAGCCGCCTGTAGTTCTTCCCCTGCAGTGAATGGCAAAGCTCATTGGCCACATCAGCAGGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000198102.5 |
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| CDS GCA 72 bp | CCTCAGAGCAAGCCTGCTGATGTGGCCAATGAGCTTTaGCATTCACTGCAGGGGAAGAACTACAGGCGGCTC | + |
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Preference number: 6 (lower is better) Translates to: PQSKPADVANEL*HSLQGKNYRRL Trigger: GAGCCGCCTGTAGTTCTTCCCCTGCAGTGAATGGCAAAGCTCATTGGCCACATCAGCAGGCTTGCTCTGAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000198102.5 |
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| CDS CAA 72 bp | GGCTCCATGAGGGACACGTGCAGGTACTTCGAAGCCTaGTACTTCTCCCTGATTGCTTGCTGCGGTCGATGG | + |
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Preference number: 6 (lower is better) Translates to: GSMRDTCRYFEA*YFSLIACCGRW Trigger: CCATCGACCGCAGCAAGCAATCAGGGAGAAGTACAAGGCTTCGAAGTACCTGCACGTGTCCCTCATGGAGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029368.7 ENSMUST00000197238.5 ENSMUST00000198320.5 |
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| CDS GCA 72 bp | GTGCAGGTACTTCGAAGCCTTGTACTTCTCCCTGATTaGTTGCTGCGGTCGATGGGGGATACTGAGGCATGC | + |
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Preference number: 6 (lower is better) Translates to: VQVLRSLVLLPD*LLRSMGDTEAC Trigger: GCATGCCTCAGTATCCCCCATCGACCGCAGCAAGCAATCAGGGAGAAGTACAAGGCTTCGAAGTACCTGCAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000029368.7 ENSMUST00000197238.5 ENSMUST00000198320.5 |
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| CDS CCA 72 bp | CCCACTCGCAGAAACCTCAGAGCAAGCCTGCTGATGTaGCCAATGAGCTTTGCCATTCACTGCAGGGGAAGA | + |
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Preference number: 6 (lower is better) Translates to: PTRRNLRASLLM*PMSFAIHCRGR Trigger: TCTTCCCCTGCAGTGAATGGCAAAGCTCATTGGCCACATCAGCAGGCTTGCTCTGAGGTTTCTGCGAGTGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000198102.5 |
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| CDS CAA 90 bp | GGACACGTGCAGGTACTTCGAAGCCTTGTACTTCTCCCTGATTGCTaGCTGCGGTCGATGGGGGATACTGAGGCATGCTTTATGCAGCTC | + |
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Preference number: 6 (lower is better) Translates to: GHVQVLRSLVLLPDC*LRSMGDTEACFMQL Trigger: GAGCTGCATAAAGCATGCCTCAGTATCCCCCATCGACCGCAGCAAGCAATCAGGGAGAAGTACAAGGCTTCGAAGTACCTGCACGTGTCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000029368.7 ENSMUST00000197238.5 ENSMUST00000198320.5 |
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| CDS GCA 72 bp | GATTGCTTGCTGCGGTCGATGGGGGATACTGAGGCATaGTTTATGCAGCTCACTCAGGCAAGGCACAATCTC | + |
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Preference number: 6 (lower is better) Translates to: DCLLRSMGDTEA*FMQLTQARHNL Trigger: GAGATTGTGCCTTGCCTGAGTGAGCTGCATAAAGCATGCCTCAGTATCCCCCATCGACCGCAGCAAGCAATC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000029368.7 ENSMUST00000197238.5 ENSMUST00000198320.5 |
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| CDS CCA 72 bp | GCCTTGTACTTCTCCCTGATTGCTTGCTGCGGTCGATaGGGGATACTGAGGCATGCTTTATGCAGCTCACTC | + |
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Preference number: 6 (lower is better) Translates to: ALYFSLIACCGR*GILRHALCSSL Trigger: GAGTGAGCTGCATAAAGCATGCCTCAGTATCCCCCATCGACCGCAGCAAGCAATCAGGGAGAAGTACAAGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029368.7 ENSMUST00000197238.5 ENSMUST00000198320.5 |
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| CDS GCA 72 bp | ATTGCTGTGATCTCCTGGCCACAGGTCCTCCTGTACTaGTCATTTTCAGTCAACACCCCTAGCACGGTTCTC | + |
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Preference number: 6 (lower is better) Translates to: IAVISWPQVLLY*SFSVNTPSTVL Trigger: GAGAACCGTGCTAGGGGTGTTGACTGAAAATGAGCAGTACAGGAGGACCTGTGGCCAGGAGATCACAGCAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000029368.7 ENSMUST00000197238.5 ENSMUST00000198320.5 ENSMUST00000199144.5 ENSMUST00000199352.2 |
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| CDS CAA 72 bp | CAGGTACTTCGAAGCCTTGTACTTCTCCCTGATTGCTaGCTGCGGTCGATGGGGGATACTGAGGCATGCTTT | + |
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Preference number: 6 (lower is better) Translates to: QVLRSLVLLPDC*LRSMGDTEACF Trigger: AAAGCATGCCTCAGTATCCCCCATCGACCGCAGCAAGCAATCAGGGAGAAGTACAAGGCTTCGAAGTACCTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000029368.7 ENSMUST00000197238.5 ENSMUST00000198320.5 |
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| CDS TCA 72 bp | TGGTGGTTGGAACGGTCAGATCAAATGCCAGGACTTTaGGTAGCAGATGCTCCATCCTCAGTAGCTGTCGCT | + |
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Preference number: 6 (lower is better) Translates to: WWLERSDQMPGL*VADAPSSVAVA Trigger: AGCGACAGCTACTGAGGATGGAGCATCTGCTACTCAAAGTCCTGGCATTTGATCTGACCGTTCCAACCACCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000029368.7 ENSMUST00000197238.5 ENSMUST00000198102.5 ENSMUST00000198320.5 |
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| CDS GCA 72 bp | TTCGAAGCCAGGAGAATAGCTGCTGTCCCGACAAGCTaGAATTTCCCTCTCAGAACAGACATGCAGGAGAGA | + |
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Preference number: 6 (lower is better) Translates to: FEARRIAAVPTS*NFPLRTDMQER Trigger: TCTCTCCTGCATGTCTGTTCTGAGAGGGAAATTGCAGCTTGTCGGGACAGCAGCTATTCTCCTGGCTTCGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000029368.7 ENSMUST00000197238.5 ENSMUST00000198102.5 ENSMUST00000198320.5 |
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| CDS GCA 72 bp | AGGTACTTCGAAGCCTTGTACTTCTCCCTGATTGCTTaGTGCGGTCGATGGGGGATACTGAGGCATGCTTTA | + |
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Preference number: 6 (lower is better) Translates to: RYFEALYFSLIA*CGRWGILRHAL Trigger: TAAAGCATGCCTCAGTATCCCCCATCGACCGCAGCAAGCAATCAGGGAGAAGTACAAGGCTTCGAAGTACCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000029368.7 ENSMUST00000197238.5 ENSMUST00000198320.5 |
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| CDS GCA 72 bp | AGGGGAAGAACTACAGGCGGCTCCATGAGGGACACGTaGAGGTACCCAGAAGTGTCTGTTCACAATATAGTT | + |
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Preference number: 6 (lower is better) Translates to: RGRTTGGSMRDT*RYPEVSVHNIV Trigger: AACTATATTGTGAACAGACACTTCTGGGTACCTGCACGTGTCCCTCATGGAGCCGCCTGTAGTTCTTCCCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000198102.5 |
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| CDS CAA 72 bp | TTGGTGGTTGGAACGGTCAGATCAAATGCCAGGACTTaGAGTAGCAGATGCTCCATCCTCAGTAGCTGTCGC | + |
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Preference number: 6 (lower is better) Translates to: LVVGTVRSNART*SSRCSILSSCR Trigger: GCGACAGCTACTGAGGATGGAGCATCTGCTACTCAAAGTCCTGGCATTTGATCTGACCGTTCCAACCACCAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000029368.7 ENSMUST00000197238.5 ENSMUST00000198102.5 ENSMUST00000198320.5 |
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| CDS CAA 90 bp | GAGGGACACGTGCAGGTACCCAGAAGTGTCTGTTCACAATATAGTTaGCCAGGCAGTAAGCTGCTGCAGCAACCAAGGAAGGAAGATACT | + |
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Preference number: 6 (lower is better) Translates to: EGHVQVPRSVCSQYS*PGSKLLQQPRKEDT Trigger: AGTATCTTCCTTCCTTGGTTGCTGCAGCAGCTTACTGCCTGGCAAACTATATTGTGAACAGACACTTCTGGGTACCTGCACGTGTCCCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000198102.5 |
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| CDS TCA 72 bp | TCCTCAGTAGCTGTCGCTTTGTGTACGTATCGTCGGTaGTGTAGACAAACTCATCCACGTCGGGCGGATATA | + |
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Preference number: 6 (lower is better) Translates to: SSVAVALCTYRR*CRQTHPRRADI Trigger: TATATCCGCCCGACGTGGATGAGTTTGTCTACATCACCGACGATACGTACACAAAGCGACAGCTACTGAGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000029368.7 ENSMUST00000197238.5 ENSMUST00000198102.5 ENSMUST00000198320.5 |
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| CDS GCA 72 bp | TGCTGCGGTCGATGGGGGATACTGAGGCATGCTTTATaGAGCTCACTCAGGCAAGGCACAATCTCATTTAAT | + |
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Preference number: 6 (lower is better) Translates to: CCGRWGILRHAL*SSLRQGTISFN Trigger: ATTAAATGAGATTGTGCCTTGCCTGAGTGAGCTGCATAAAGCATGCCTCAGTATCCCCCATCGACCGCAGCA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000029368.7 ENSMUST00000197238.5 ENSMUST00000198320.5 |
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| CDS GCA 72 bp | TGCAGGTACCCAGAAGTGTCTGTTCACAATATAGTTTaGCAGGCAGTAAGCTGCTGCAGCAACCAAGGAAGG | + |
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Preference number: 6 (lower is better) Translates to: CRYPEVSVHNIV*QAVSCCSNQGR Trigger: CCTTCCTTGGTTGCTGCAGCAGCTTACTGCCTGGCAAACTATATTGTGAACAGACACTTCTGGGTACCTGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000198102.5 |
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| CDS CCA 72 bp | CTCCTTGACGCCTTAGGTACTGAAGGAGGAATTGGTTaGTGGTTGGAACGGTCAGATCAAATGCCAGGACTT | + |
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Preference number: 6 (lower is better) Translates to: LLDALGTEGGIG*WLERSDQMPGL Trigger: AAGTCCTGGCATTTGATCTGACCGTTCCAACCACCAACCAATTCCTCCTTCAGTACCTAAGGCGTCAAGGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000029368.7 ENSMUST00000197238.5 ENSMUST00000198102.5 ENSMUST00000198320.5 |
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| CDS CAA 72 bp | GTGCAGGTACCCAGAAGTGTCTGTTCACAATATAGTTaGCCAGGCAGTAAGCTGCTGCAGCAACCAAGGAAG | + |
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Preference number: 6 (lower is better) Translates to: VQVPRSVCSQYS*PGSKLLQQPRK Trigger: CTTCCTTGGTTGCTGCAGCAGCTTACTGCCTGGCAAACTATATTGTGAACAGACACTTCTGGGTACCTGCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000198102.5 |
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| CDS CAA 90 bp | AGGAATTGGTTGGTGGTTGGAACGGTCAGATCAAATGCCAGGACTTaGAGTAGCAGATGCTCCATCCTCAGTAGCTGTCGCTTTGTGTAC | + |
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Preference number: 6 (lower is better) Translates to: RNWLVVGTVRSNART*SSRCSILSSCRFVY Trigger: GTACACAAAGCGACAGCTACTGAGGATGGAGCATCTGCTACTCAAAGTCCTGGCATTTGATCTGACCGTTCCAACCACCAACCAATTCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000029368.7 ENSMUST00000197238.5 ENSMUST00000198102.5 ENSMUST00000198320.5 |
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| CDS TCA 72 bp | CCATATAGATATCAAACCCACGTTTGGCTGGTTCATTaGCCCCATGGTCAGAGAGCACTTTCTTTCCAGCCG | + |
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Preference number: 6 (lower is better) Translates to: PYRYQTHVWLVH*PHGQRALSFQP Trigger: CGGCTGGAAAGAAAGTGCTCTCTGACCATGGGGTCAATGAACCAGCCAAACGTGGGTTTGATATCTATATGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029368.7 ENSMUST00000197238.5 ENSMUST00000198320.5 ENSMUST00000199144.5 |
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| CDS GCA 72 bp | ACGGTCAGATCAAATGCCAGGACTTTGAGTAGCAGATaGTCCATCCTCAGTAGCTGTCGCTTTGTGTACGTA | + |
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Preference number: 6 (lower is better) Translates to: TVRSNARTLSSR*SILSSCRFVYV Trigger: TACGTACACAAAGCGACAGCTACTGAGGATGGAGCATCTGCTACTCAAAGTCCTGGCATTTGATCTGACCGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000029368.7 ENSMUST00000197238.5 ENSMUST00000198102.5 ENSMUST00000198320.5 |
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| CDS GCA 72 bp | TGTTTCTGGCCAGAAGTGTCTGTTCACAATATAGTTTaGCAGGCAGTAAGCTGCTGCAGCAACCAAGGAAGG | + |
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Preference number: 6 (lower is better) Translates to: CFWPEVSVHNIV*QAVSCCSNQGR Trigger: CCTTCCTTGGTTGCTGCAGCAGCTTACTGCCTGGCAAACTATATTGTGAACAGACACTTCTGGCCAGAAACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029368.7 ENSMUST00000197238.5 ENSMUST00000198320.5 |
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| CDS CCA 72 bp | AGCATTGGGGAAACTGTGTTGAAATCCAGCAGGAAGTaGAGATCTGACTTGAGCATGCTGGTGTCGACTTCA | + |
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Preference number: 6 (lower is better) Translates to: SIGETVLKSSRK*RSDLSMLVSTS Trigger: TGAAGTCGACACCAGCATGCTCAAGTCAGATCTCCACTTCCTGCTGGATTTCAACACAGTTTCCCCAATGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029368.7 ENSMUST00000197238.5 ENSMUST00000198320.5 ENSMUST00000199144.5 |
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| CDS CAA 72 bp | GTGTTTCTGGCCAGAAGTGTCTGTTCACAATATAGTTaGCCAGGCAGTAAGCTGCTGCAGCAACCAAGGAAG | + |
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Preference number: 6 (lower is better) Translates to: VFLARSVCSQYS*PGSKLLQQPRK Trigger: CTTCCTTGGTTGCTGCAGCAGCTTACTGCCTGGCAAACTATATTGTGAACAGACACTTCTGGCCAGAAACAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029368.7 ENSMUST00000197238.5 ENSMUST00000198320.5 |
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| CDS CAA 90 bp | ATGCAGCAAGTGTTTCTGGCCAGAAGTGTCTGTTCACAATATAGTTaGCCAGGCAGTAAGCTGCTGCAGCAACCAAGGAAGGAAGATACT | + |
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Preference number: 6 (lower is better) Translates to: MQQVFLARSVCSQYS*PGSKLLQQPRKEDT Trigger: AGTATCTTCCTTCCTTGGTTGCTGCAGCAGCTTACTGCCTGGCAAACTATATTGTGAACAGACACTTCTGGCCAGAAACACTTGCTGCAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029368.7 ENSMUST00000197238.5 ENSMUST00000198320.5 |
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| CDS TCA 72 bp | GGAAACTGTGTTGAAATCCAGCAGGAAGTGGAGATCTaGCTTGAGCATGCTGGTGTCGACTTCATACACATC | + |
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Preference number: 6 (lower is better) Translates to: GNCVEIQQEVEI*LEHAGVDFIHI Trigger: GATGTGTATGAAGTCGACACCAGCATGCTCAAGTCAGATCTCCACTTCCTGCTGGATTTCAACACAGTTTCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000029368.7 ENSMUST00000197238.5 ENSMUST00000198320.5 ENSMUST00000199144.5 |
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| CDS TCA 72 bp | TCAGTTCTGCAACATACTTGGCCAAATTCTCAGTCCTaGTGCACACTCCTTGACGCCTTAGGTACTGAAGGA | + |
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Preference number: 6 (lower is better) Translates to: SVLQHTWPNSQS*CTLLDALGTEG Trigger: TCCTTCAGTACCTAAGGCGTCAAGGAGTGTGCATCAGGACTGAGAATTTGGCCAAGTATGTTGCAGAACTGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000029368.7 ENSMUST00000197238.5 ENSMUST00000198102.5 ENSMUST00000198320.5 |
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| CDS TCA 72 bp | GAGCACTTTCTTTCCAGCCGCAGGGAAGACATTTTCTaGTCCAGAAAAACATCTGATTGCTGTGATCTCCTG | + |
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Preference number: 6 (lower is better) Translates to: EHFLSSRREDIF*SRKTSDCCDLL Trigger: CAGGAGATCACAGCAATCAGATGTTTTTCTGGATCAGAAAATGTCTTCCCTGCGGCTGGAAAGAAAGTGCTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000029368.7 ENSMUST00000197238.5 ENSMUST00000198320.5 ENSMUST00000199144.5 ENSMUST00000199352.2 |
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| CDS CAA 90 bp | ATTGGGGAAACTGTGTTGAAATCCAGCAGGAAGTGGAGATCTGACTaGAGCATGCTGGTGTCGACTTCATACACATCCTCAAATATGATG | + |
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Preference number: 6 (lower is better) Translates to: IGETVLKSSRKWRSD*SMLVSTSYTSSNMM Trigger: CATCATATTTGAGGATGTGTATGAAGTCGACACCAGCATGCTCAAGTCAGATCTCCACTTCCTGCTGGATTTCAACACAGTTTCCCCAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029368.7 ENSMUST00000197238.5 ENSMUST00000198320.5 ENSMUST00000199144.5 |
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| CDS GCA 72 bp | ATATATCTCTTCATATTTCGAAGCCAGGAGAATAGCTaGTGTCCCGACAAGCTGCAATTTCCCTCTCAGAAC | + |
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Preference number: 6 (lower is better) Translates to: IYLFIFRSQENS*CPDKLQFPSQN Trigger: GTTCTGAGAGGGAAATTGCAGCTTGTCGGGACAGCAGCTATTCTCCTGGCTTCGAAATATGAAGAGATATAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000029368.7 ENSMUST00000197238.5 ENSMUST00000198102.5 ENSMUST00000198320.5 |
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| CDS GCA 72 bp | GTGTCTGTTCACAATATAGTTTGCCAGGCAGTAAGCTaGTGCAGCAACCAAGGAAGGAAGATACTTCAAGAA | + |
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Preference number: 6 (lower is better) Translates to: VSVHNIVCQAVS*CSNQGRKILQE Trigger: TTCTTGAAGTATCTTCCTTCCTTGGTTGCTGCAGCAGCTTACTGCCTGGCAAACTATATTGTGAACAGACAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000029368.7 ENSMUST00000197238.5 ENSMUST00000198102.5 ENSMUST00000198320.5 |
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| CDS CCA 72 bp | AGGATCATCCATATAGATATCAAACCCACGTTTGGCTaGTTCATTGACCCCATGGTCAGAGAGCACTTTCTT | + |
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Preference number: 6 (lower is better) Translates to: RIIHIDIKPTFG*FIDPMVREHFL Trigger: AAGAAAGTGCTCTCTGACCATGGGGTCAATGAACCAGCCAAACGTGGGTTTGATATCTATATGGATGATCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029368.7 ENSMUST00000197238.5 ENSMUST00000198320.5 ENSMUST00000199144.5 |
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